Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39483.t1 | KEH31034.1 | 84.2 | 297 | 24 | 2 | 1 | 297 | 1 | 274 | 1.50E-120 | 442.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39483.t1 | Q1PFR7 | 36.1 | 166 | 95 | 3 | 45 | 199 | 100 | 265 | 8.1e-19 | 95.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39483.t1 | A0A072UMM3 | 84.2 | 297 | 24 | 2 | 1 | 297 | 1 | 274 | 1.1e-120 | 442.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene39483.t1 | TF | B3 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39483.t1 | MTR_4g088605 | 83.838 | 297 | 25 | 2 | 1 | 297 | 1 | 274 | 1.78e-170 | 473 |
MS.gene39483.t1 | MTR_7g083700 | 34.503 | 171 | 97 | 6 | 98 | 265 | 119 | 277 | 5.39e-19 | 85.9 |
MS.gene39483.t1 | MTR_7g059330 | 42.105 | 95 | 54 | 1 | 100 | 193 | 618 | 712 | 9.88e-19 | 86.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39483.t1 | AT1G28300 | 46.667 | 105 | 55 | 1 | 98 | 201 | 163 | 267 | 7.59e-25 | 102 |
MS.gene39483.t1 | AT3G24650 | 35.625 | 160 | 92 | 4 | 100 | 255 | 566 | 718 | 1.72e-19 | 89.0 |
MS.gene39483.t1 | AT3G26790 | 36.134 | 119 | 74 | 2 | 98 | 214 | 84 | 202 | 2.01e-19 | 87.0 |
Find 59 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATTCAGTCGACTAATAATT+TGG | 0.175655 | 4.2:-22466338 | MS.gene39483:CDS |
TTCCATAGGTATTGGATTAA+TGG | 0.179633 | 4.2:-22467080 | MS.gene39483:intron |
AGGTGACATTGCAGTATTAT+TGG | 0.262098 | 4.2:+22466279 | None:intergenic |
TACTGCAATGTCACCTATAT+TGG | 0.265257 | 4.2:-22466272 | MS.gene39483:CDS |
TTGCAGTATTATTGGTTTCT+TGG | 0.266997 | 4.2:+22466287 | None:intergenic |
AAACATGTGGAGTTCTTTCT+TGG | 0.273984 | 4.2:+22467890 | None:intergenic |
TGCAGTATTATTGGTTTCTT+GGG | 0.347184 | 4.2:+22466288 | None:intergenic |
TGGTTTCTTGGGCGACTGAT+TGG | 0.387076 | 4.2:+22466299 | None:intergenic |
TATATTGGACCATACCGTTT+TGG | 0.393571 | 4.2:-22466257 | MS.gene39483:CDS |
TATTAGTCGACTGAATTTGT+TGG | 0.408347 | 4.2:+22466344 | None:intergenic |
TAAAACTAGAATGTATATTC+TGG | 0.416222 | 4.2:-22467057 | MS.gene39483:CDS |
ATCCCTTCTTTGCTAGGGGC+TGG | 0.418097 | 4.2:+22467258 | None:intergenic |
AAAACGGTATGGTCCAATAT+AGG | 0.420315 | 4.2:+22466259 | None:intergenic |
CTTCAATCCCTTCTTTGCTA+GGG | 0.422481 | 4.2:+22467253 | None:intergenic |
AACATGTGGAGTTCTTTCTT+GGG | 0.423807 | 4.2:+22467891 | None:intergenic |
CTTCCAGCCCCTAGCAAAGA+AGG | 0.423970 | 4.2:-22467261 | MS.gene39483:CDS |
CTCCCATGCATAGTTTGTAA+TGG | 0.426934 | 4.2:+22466918 | None:intergenic |
TCTTGGGCGACTGATTGGTT+TGG | 0.430360 | 4.2:+22466304 | None:intergenic |
CTATGCATGGGAGATTATCT+AGG | 0.431047 | 4.2:-22466908 | MS.gene39483:CDS |
ACTTCAATCCCTTCTTTGCT+AGG | 0.433841 | 4.2:+22467252 | None:intergenic |
AAGAGCGATGTTAAGAACTA+TGG | 0.459102 | 4.2:-22467721 | MS.gene39483:CDS |
ACTTTATTCCTCTTCTCTGA+TGG | 0.466086 | 4.2:-22468112 | MS.gene39483:CDS |
GTCATTACCGTCTACCAAAA+CGG | 0.474492 | 4.2:+22466243 | None:intergenic |
ATATATATTCTGGTCGTGAA+TGG | 0.483145 | 4.2:-22467218 | MS.gene39483:CDS |
ATGTATATTCTGGAGGATAC+AGG | 0.488201 | 4.2:-22467047 | MS.gene39483:intron |
TCCTCAACTTGGAGTTGAAA+GGG | 0.488533 | 4.2:-22468055 | MS.gene39483:CDS |
TGGGCGACTGATTGGTTTGG+TGG | 0.491784 | 4.2:+22466307 | None:intergenic |
CTTTATTCCTCTTCTCTGAT+GGG | 0.493478 | 4.2:-22468111 | MS.gene39483:CDS |
AGATTATCTAGGCCTTTATG+AGG | 0.503786 | 4.2:-22466897 | MS.gene39483:CDS |
AAACCATTACAAACTATGCA+TGG | 0.506884 | 4.2:-22466921 | MS.gene39483:CDS |
TTCAATCCCTTCTTTGCTAG+GGG | 0.508172 | 4.2:+22467254 | None:intergenic |
TTACAATCACCTTTCCATCT+CGG | 0.512982 | 4.2:+22467860 | None:intergenic |
CATCGAGGAAATTGTATGCA+TGG | 0.513461 | 4.2:+22468149 | None:intergenic |
TCCTTGCCTTGGTCTGCACA+AGG | 0.515897 | 4.2:+22466391 | None:intergenic |
CTCCTCAACTTGGAGTTGAA+AGG | 0.517571 | 4.2:-22468056 | MS.gene39483:CDS |
ATCGAGGAAATTGTATGCAT+GGG | 0.519150 | 4.2:+22468150 | None:intergenic |
GGAGTAGTTTGAATTATGAA+AGG | 0.529192 | 4.2:+22468075 | None:intergenic |
ATTCAAACTACTCCTCAACT+TGG | 0.533290 | 4.2:-22468066 | MS.gene39483:CDS |
TGTTGGTTGGCCAAGTCTGA+TGG | 0.537691 | 4.2:+22466361 | None:intergenic |
TCCCTTTCAACTCCAAGTTG+AGG | 0.546205 | 4.2:+22468054 | None:intergenic |
CGATGAACAACAAAGCAGCT+TGG | 0.554733 | 4.2:-22466203 | MS.gene39483:CDS |
AAAATTCAAATAGAGGGAGG+TGG | 0.561158 | 4.2:-22467292 | MS.gene39483:intron |
ACTTGGAGTTGAAAGGGAAG+AGG | 0.563033 | 4.2:-22468049 | MS.gene39483:CDS |
GAAGAGGAATAAAGTTCATG+AGG | 0.578069 | 4.2:+22468120 | None:intergenic |
AACCATTACAAACTATGCAT+GGG | 0.584630 | 4.2:-22466920 | MS.gene39483:CDS |
AGTCGACTGAATTTGTTGGT+TGG | 0.588883 | 4.2:+22466348 | None:intergenic |
ACTTTGTCCCATCAGAGAAG+AGG | 0.602953 | 4.2:+22468104 | None:intergenic |
TACCGTCTACCAAAACGGTA+TGG | 0.606216 | 4.2:+22466248 | None:intergenic |
AACTAGAATGTATATTCTGG+AGG | 0.612428 | 4.2:-22467054 | MS.gene39483:CDS |
TTCCAGCCCCTAGCAAAGAA+GGG | 0.619594 | 4.2:-22467260 | MS.gene39483:CDS |
GCAAAATTGCTAGAGAACAA+AGG | 0.622012 | 4.2:-22467999 | MS.gene39483:CDS |
ACCTTGTGCAGACCAAGGCA+AGG | 0.622413 | 4.2:-22466392 | MS.gene39483:CDS |
CTCTTACCTTGTGCAGACCA+AGG | 0.626902 | 4.2:-22466397 | MS.gene39483:CDS |
TGGTCGCATTGTCCTCCCAA+AGG | 0.635548 | 4.2:-22467701 | MS.gene39483:intron |
GGCTTGTGATCTATCGACAG+TGG | 0.662909 | 4.2:-22466422 | MS.gene39483:CDS |
TTGGTAGACGGTAATGACGG+TGG | 0.669570 | 4.2:-22466238 | MS.gene39483:CDS |
TTCATGAGGTTGATTCATCG+AGG | 0.675142 | 4.2:+22468134 | None:intergenic |
AAGAAGCCCTCACCTTTGGG+AGG | 0.679981 | 4.2:+22467689 | None:intergenic |
GTAGACGGTAATGACGGTGG+TGG | 0.704774 | 4.2:-22466235 | MS.gene39483:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TATTTTTATTTTTGTTCTTT+TGG | - | chr4.2:22466957-22466976 | MS.gene39483:intron | 10.0% |
!!! | TTTTTTATAAATCATAACAA+CGG | + | chr4.2:22466728-22466747 | None:intergenic | 10.0% |
!!! | TACAATCATTTTTTTCATTT+GGG | + | chr4.2:22467633-22467652 | None:intergenic | 15.0% |
!!! | TTTTTATAAATCATAACAAC+GGG | + | chr4.2:22466727-22466746 | None:intergenic | 15.0% |
!! | TAAAACTAGAATGTATATTC+TGG | - | chr4.2:22467249-22467268 | MS.gene39483:CDS | 20.0% |
!!! | ATTTTCAAGGATATATATTC+TGG | - | chr4.2:22467078-22467097 | MS.gene39483:intron | 20.0% |
!!! | CTACAATCATTTTTTTCATT+TGG | + | chr4.2:22467634-22467653 | None:intergenic | 20.0% |
! | AAACATCAAAAATATCGTCA+AGG | + | chr4.2:22468145-22468164 | None:intergenic | 25.0% |
! | AATTCAGTCGACTAATAATT+TGG | - | chr4.2:22467968-22467987 | MS.gene39483:CDS | 25.0% |
! | AGAAAAAAATTGAAGCAAAG+AGG | - | chr4.2:22466283-22466302 | MS.gene39483:CDS | 25.0% |
!! | ATTTTCTCTCTTAATGTAAC+AGG | - | chr4.2:22467353-22467372 | MS.gene39483:intron | 25.0% |
!! | TGTGGTATTTATTACTCTTT+TGG | - | chr4.2:22466489-22466508 | MS.gene39483:intron | 25.0% |
!! | TTTTCTCTCTTAATGTAACA+GGG | - | chr4.2:22467354-22467373 | MS.gene39483:intron | 25.0% |
!!! | TATTGTTTTACAACTCACAA+TGG | + | chr4.2:22467796-22467815 | None:intergenic | 25.0% |
AAACCATTACAAACTATGCA+TGG | - | chr4.2:22467385-22467404 | MS.gene39483:intron | 30.0% | |
AAATTAGCAACACTAAGAAG+TGG | + | chr4.2:22467292-22467311 | None:intergenic | 30.0% | |
AACCATTACAAACTATGCAT+GGG | - | chr4.2:22467386-22467405 | MS.gene39483:intron | 30.0% | |
AACTAGAATGTATATTCTGG+AGG | - | chr4.2:22467252-22467271 | MS.gene39483:CDS | 30.0% | |
AGTTTATACCCATTAGAGTT+TGG | + | chr4.2:22467201-22467220 | None:intergenic | 30.0% | |
ATAAGAGAAGTCTGTAAACA+TGG | + | chr4.2:22467693-22467712 | None:intergenic | 30.0% | |
ATATATATTCTGGTCGTGAA+TGG | - | chr4.2:22467088-22467107 | MS.gene39483:intron | 30.0% | |
GGAGTAGTTTGAATTATGAA+AGG | + | chr4.2:22466234-22466253 | None:intergenic | 30.0% | |
GTATAAACTGGAAATTCCAT+AGG | - | chr4.2:22467212-22467231 | MS.gene39483:CDS | 30.0% | |
TACCATTAATCCAATACCTA+TGG | + | chr4.2:22467231-22467250 | None:intergenic | 30.0% | |
TATTAGTCGACTGAATTTGT+TGG | + | chr4.2:22467965-22467984 | None:intergenic | 30.0% | |
TGAGGACGAACTTAAAAATT+TGG | - | chr4.2:22467427-22467446 | MS.gene39483:intron | 30.0% | |
! | AAACTCTAATGGGTATAAAC+TGG | - | chr4.2:22467200-22467219 | MS.gene39483:intron | 30.0% |
! | GTTTCAGTTCTCATGATTTT+GGG | - | chr4.2:22467317-22467336 | MS.gene39483:intron | 30.0% |
! | TGTTTCAGTTCTCATGATTT+TGG | - | chr4.2:22467316-22467335 | MS.gene39483:intron | 30.0% |
!! | TGCAGTATTATTGGTTTCTT+GGG | + | chr4.2:22468021-22468040 | None:intergenic | 30.0% |
!! | TTCCATAGGTATTGGATTAA+TGG | - | chr4.2:22467226-22467245 | MS.gene39483:CDS | 30.0% |
!! | TTGCAGTATTATTGGTTTCT+TGG | + | chr4.2:22468022-22468041 | None:intergenic | 30.0% |
!!! | TTTTAAGTTCGTCCTCATAA+AGG | + | chr4.2:22467424-22467443 | None:intergenic | 30.0% |
AAAACGGTATGGTCCAATAT+AGG | + | chr4.2:22468050-22468069 | None:intergenic | 35.0% | |
AAAATTCAAATAGAGGGAGG+TGG | - | chr4.2:22467014-22467033 | MS.gene39483:intron | 35.0% | |
AAACATGTGGAGTTCTTTCT+TGG | + | chr4.2:22466419-22466438 | None:intergenic | 35.0% | |
AACATGTGGAGTTCTTTCTT+GGG | + | chr4.2:22466418-22466437 | None:intergenic | 35.0% | |
AAGAGCGATGTTAAGAACTA+TGG | - | chr4.2:22466585-22466604 | MS.gene39483:intron | 35.0% | |
ACTGGAAATTCCATAGGTAT+TGG | - | chr4.2:22467218-22467237 | MS.gene39483:CDS | 35.0% | |
ACTTTATTCCTCTTCTCTGA+TGG | - | chr4.2:22466194-22466213 | MS.gene39483:CDS | 35.0% | |
AGATTATCTAGGCCTTTATG+AGG | - | chr4.2:22467409-22467428 | MS.gene39483:intron | 35.0% | |
AGGTGACATTGCAGTATTAT+TGG | + | chr4.2:22468030-22468049 | None:intergenic | 35.0% | |
ATTCAAACTACTCCTCAACT+TGG | - | chr4.2:22466240-22466259 | MS.gene39483:CDS | 35.0% | |
CCTCCCAAAATTCAAATAGA+GGG | - | chr4.2:22467008-22467027 | MS.gene39483:intron | 35.0% | |
CTTTATTCCTCTTCTCTGAT+GGG | - | chr4.2:22466195-22466214 | MS.gene39483:CDS | 35.0% | |
GAAGAGGAATAAAGTTCATG+AGG | + | chr4.2:22466189-22466208 | None:intergenic | 35.0% | |
GAAGTCTGTAAACATGGTAA+TGG | + | chr4.2:22467687-22467706 | None:intergenic | 35.0% | |
GCAAAATTGCTAGAGAACAA+AGG | - | chr4.2:22466307-22466326 | MS.gene39483:CDS | 35.0% | |
TACTGCAATGTCACCTATAT+TGG | - | chr4.2:22468034-22468053 | MS.gene39483:CDS | 35.0% | |
TATACCCATTAGAGTTTGGA+AGG | + | chr4.2:22467197-22467216 | None:intergenic | 35.0% | |
TCCTCCCAAAATTCAAATAG+AGG | - | chr4.2:22467007-22467026 | MS.gene39483:intron | 35.0% | |
TTACAATCACCTTTCCATCT+CGG | + | chr4.2:22466449-22466468 | None:intergenic | 35.0% | |
! | ACCTCCCTCTATTTGAATTT+TGG | + | chr4.2:22467015-22467034 | None:intergenic | 35.0% |
! | ATGTATATTCTGGAGGATAC+AGG | - | chr4.2:22467259-22467278 | MS.gene39483:CDS | 35.0% |
! | CCTCCCTCTATTTGAATTTT+GGG | + | chr4.2:22467014-22467033 | None:intergenic | 35.0% |
! | TATATTGGACCATACCGTTT+TGG | - | chr4.2:22468049-22468068 | MS.gene39483:CDS | 35.0% |
!! | AGGGATTGAAGTCATTTTCA+AGG | - | chr4.2:22467065-22467084 | MS.gene39483:CDS | 35.0% |
!! | TGTGTCACTGTATTTTCGAA+AGG | + | chr4.2:22466881-22466900 | None:intergenic | 35.0% |
ACTTCAATCCCTTCTTTGCT+AGG | + | chr4.2:22467057-22467076 | None:intergenic | 40.0% | |
CCCAAAATTCAAATAGAGGG+AGG | - | chr4.2:22467011-22467030 | MS.gene39483:intron | 40.0% | |
CTATGCATGGGAGATTATCT+AGG | - | chr4.2:22467398-22467417 | MS.gene39483:intron | 40.0% | |
CTTCAATCCCTTCTTTGCTA+GGG | + | chr4.2:22467056-22467075 | None:intergenic | 40.0% | |
GCAGTATGTGTGCACAAAAA+AGG | - | chr4.2:22467863-22467882 | MS.gene39483:intron | 40.0% | |
GGAAAAAGAACCATCAGACT+TGG | - | chr4.2:22467935-22467954 | MS.gene39483:CDS | 40.0% | |
GTCATTACCGTCTACCAAAA+CGG | + | chr4.2:22468066-22468085 | None:intergenic | 40.0% | |
TCCTCAACTTGGAGTTGAAA+GGG | - | chr4.2:22466251-22466270 | MS.gene39483:CDS | 40.0% | |
TCTCGGCTGTAAAAAACATG+TGG | + | chr4.2:22466432-22466451 | None:intergenic | 40.0% | |
TTCAATCCCTTCTTTGCTAG+GGG | + | chr4.2:22467055-22467074 | None:intergenic | 40.0% | |
! | ATGGTTCTTTTTCCTTGCCT+TGG | + | chr4.2:22467929-22467948 | None:intergenic | 40.0% |
! | CCCTCTATTTGAATTTTGGG+AGG | + | chr4.2:22467011-22467030 | None:intergenic | 40.0% |
! | CTCCCATGCATAGTTTGTAA+TGG | + | chr4.2:22467391-22467410 | None:intergenic | 40.0% |
! | TTCATGAGGTTGATTCATCG+AGG | + | chr4.2:22466175-22466194 | None:intergenic | 40.0% |
! | TTTTTACAGCCGAGATGGAA+AGG | - | chr4.2:22466437-22466456 | MS.gene39483:CDS | 40.0% |
!! | AGTCGACTGAATTTGTTGGT+TGG | + | chr4.2:22467961-22467980 | None:intergenic | 40.0% |
!! | GTTTTGGTAGACGGTAATGA+CGG | - | chr4.2:22468065-22468084 | MS.gene39483:CDS | 40.0% |
!!! | CATGTTTTTTACAGCCGAGA+TGG | - | chr4.2:22466432-22466451 | MS.gene39483:CDS | 40.0% |
ACTTGGAGTTGAAAGGGAAG+AGG | - | chr4.2:22466257-22466276 | MS.gene39483:CDS | 45.0% | |
ACTTTGTCCCATCAGAGAAG+AGG | + | chr4.2:22466205-22466224 | None:intergenic | 45.0% | |
ATGAAGAAGCCCTCACCTTT+GGG | + | chr4.2:22466623-22466642 | None:intergenic | 45.0% | |
CATGAACTCTTCTTTGTGCG+AGG | - | chr4.2:22467838-22467857 | MS.gene39483:intron | 45.0% | |
CGATGAACAACAAAGCAGCT+TGG | - | chr4.2:22468103-22468122 | MS.gene39483:CDS | 45.0% | |
CTCCTCAACTTGGAGTTGAA+AGG | - | chr4.2:22466250-22466269 | MS.gene39483:CDS | 45.0% | |
GTCGCCTTCCAAACTCTAAT+GGG | - | chr4.2:22467190-22467209 | MS.gene39483:intron | 45.0% | |
GTGAGGGCTTCTTCATCAAA+GGG | - | chr4.2:22466627-22466646 | MS.gene39483:intron | 45.0% | |
TACCGTCTACCAAAACGGTA+TGG | + | chr4.2:22468061-22468080 | None:intergenic | 45.0% | |
TCCCTTTCAACTCCAAGTTG+AGG | + | chr4.2:22466255-22466274 | None:intergenic | 45.0% | |
TGTCGCCTTCCAAACTCTAA+TGG | - | chr4.2:22467189-22467208 | MS.gene39483:intron | 45.0% | |
! | TTTGGGAAGTGTGCATTGAC+TGG | + | chr4.2:22467616-22467635 | None:intergenic | 45.0% |
!! | GACCATACCGTTTTGGTAGA+CGG | - | chr4.2:22468056-22468075 | MS.gene39483:CDS | 45.0% |
!! | TTTAATTAATTATATTTATG+TGG | - | chr4.2:22466471-22466490 | MS.gene39483:intron | 5.0% |
!!! | AATATTAATAACTTTTATAA+AGG | + | chr4.2:22467465-22467484 | None:intergenic | 5.0% |
CATTGTCCTCCCAAAGGTGA+GGG | - | chr4.2:22466611-22466630 | MS.gene39483:intron | 50.0% | |
CTCTTACCTTGTGCAGACCA+AGG | - | chr4.2:22467909-22467928 | MS.gene39483:CDS | 50.0% | |
GATGAAGAAGCCCTCACCTT+TGG | + | chr4.2:22466624-22466643 | None:intergenic | 50.0% | |
GGCTTGTGATCTATCGACAG+TGG | - | chr4.2:22467884-22467903 | MS.gene39483:CDS | 50.0% | |
GGTGAGGGCTTCTTCATCAA+AGG | - | chr4.2:22466626-22466645 | MS.gene39483:intron | 50.0% | |
TGGTTTCTTGGGCGACTGAT+TGG | + | chr4.2:22468010-22468029 | None:intergenic | 50.0% | |
TTCCAGCCCCTAGCAAAGAA+GGG | - | chr4.2:22467046-22467065 | MS.gene39483:intron | 50.0% | |
TTGGTAGACGGTAATGACGG+TGG | - | chr4.2:22468068-22468087 | MS.gene39483:CDS | 50.0% | |
! | TCTTGGGCGACTGATTGGTT+TGG | + | chr4.2:22468005-22468024 | None:intergenic | 50.0% |
! | TGTTGGTTGGCCAAGTCTGA+TGG | + | chr4.2:22467948-22467967 | None:intergenic | 50.0% |
AAGAAGCCCTCACCTTTGGG+AGG | + | chr4.2:22466620-22466639 | None:intergenic | 55.0% | |
ACCTTGTGCAGACCAAGGCA+AGG | - | chr4.2:22467914-22467933 | MS.gene39483:CDS | 55.0% | |
ATCCCTTCTTTGCTAGGGGC+TGG | + | chr4.2:22467051-22467070 | None:intergenic | 55.0% | |
CTTCCAGCCCCTAGCAAAGA+AGG | - | chr4.2:22467045-22467064 | MS.gene39483:intron | 55.0% | |
GCATTGTCCTCCCAAAGGTG+AGG | - | chr4.2:22466610-22466629 | MS.gene39483:intron | 55.0% | |
GTAGACGGTAATGACGGTGG+TGG | - | chr4.2:22468071-22468090 | MS.gene39483:CDS | 55.0% | |
TCCTTGCCTTGGTCTGCACA+AGG | + | chr4.2:22467918-22467937 | None:intergenic | 55.0% | |
TGGTCGCATTGTCCTCCCAA+AGG | - | chr4.2:22466605-22466624 | MS.gene39483:intron | 55.0% | |
!! | TGGGCGACTGATTGGTTTGG+TGG | + | chr4.2:22468002-22468021 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 22466159 | 22468169 | 22466159 | ID=MS.gene39483 |
chr4.2 | mRNA | 22466159 | 22468169 | 22466159 | ID=MS.gene39483.t1;Parent=MS.gene39483 |
chr4.2 | exon | 22467870 | 22468169 | 22467870 | ID=MS.gene39483.t1.exon1;Parent=MS.gene39483.t1 |
chr4.2 | CDS | 22467870 | 22468169 | 22467870 | ID=cds.MS.gene39483.t1;Parent=MS.gene39483.t1 |
chr4.2 | exon | 22467702 | 22467776 | 22467702 | ID=MS.gene39483.t1.exon2;Parent=MS.gene39483.t1 |
chr4.2 | CDS | 22467702 | 22467776 | 22467702 | ID=cds.MS.gene39483.t1;Parent=MS.gene39483.t1 |
chr4.2 | exon | 22467204 | 22467301 | 22467204 | ID=MS.gene39483.t1.exon3;Parent=MS.gene39483.t1 |
chr4.2 | CDS | 22467204 | 22467301 | 22467204 | ID=cds.MS.gene39483.t1;Parent=MS.gene39483.t1 |
chr4.2 | exon | 22467048 | 22467094 | 22467048 | ID=MS.gene39483.t1.exon4;Parent=MS.gene39483.t1 |
chr4.2 | CDS | 22467048 | 22467094 | 22467048 | ID=cds.MS.gene39483.t1;Parent=MS.gene39483.t1 |
chr4.2 | exon | 22466880 | 22466953 | 22466880 | ID=MS.gene39483.t1.exon5;Parent=MS.gene39483.t1 |
chr4.2 | CDS | 22466880 | 22466953 | 22466880 | ID=cds.MS.gene39483.t1;Parent=MS.gene39483.t1 |
chr4.2 | exon | 22466159 | 22466461 | 22466159 | ID=MS.gene39483.t1.exon6;Parent=MS.gene39483.t1 |
chr4.2 | CDS | 22466159 | 22466461 | 22466159 | ID=cds.MS.gene39483.t1;Parent=MS.gene39483.t1 |
Gene Sequence |
Protein sequence |