AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39494

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39494.t1 MTR_0856s0010 93.496 123 8 0 9 131 38 160 5.21e-81 243
MS.gene39494.t1 MTR_7g115320 56.410 78 29 2 87 164 3 75 8.62e-22 88.2
MS.gene39494.t1 MTR_4g035820 26.557 305 205 11 11 300 81 381 1.37e-18 87.0
MS.gene39494.t1 MTR_1g008290 33.333 135 87 1 64 198 13 144 3.64e-17 77.4
MS.gene39494.t1 MTR_7g446060 39.785 93 53 2 80 171 1 91 5.46e-17 76.6
MS.gene39494.t1 MTR_1g083640 24.034 233 152 5 5 213 51 282 1.15e-13 70.5
MS.gene39494.t1 MTR_0558s0020 23.176 233 154 5 5 213 36 267 2.74e-13 69.7
MS.gene39494.t1 MTR_6g051425 26.056 142 104 1 75 215 94 235 3.39e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39494.t1 AT4G38180 43.846 130 72 1 193 322 402 530 2.62e-30 121
MS.gene39494.t1 AT4G38180 29.858 211 140 4 11 214 79 288 9.56e-21 93.6
MS.gene39494.t1 AT4G15090 33.000 200 130 4 20 215 66 265 9.21e-25 105
MS.gene39494.t1 AT4G15090 34.752 141 85 1 182 322 373 506 1.35e-21 95.9
MS.gene39494.t1 AT4G15090 33.000 200 130 4 20 215 66 265 9.21e-25 105
MS.gene39494.t1 AT4G15090 34.752 141 85 1 182 322 373 506 1.35e-21 95.9
MS.gene39494.t1 AT4G15090 33.000 200 130 4 20 215 66 265 9.21e-25 105
MS.gene39494.t1 AT4G15090 34.752 141 85 1 182 322 373 506 1.35e-21 95.9
MS.gene39494.t1 AT4G15090 33.000 200 130 4 20 215 66 265 9.21e-25 105
MS.gene39494.t1 AT4G15090 34.752 141 85 1 182 322 373 506 1.35e-21 95.9
MS.gene39494.t1 AT4G15090 33.000 200 130 4 20 215 66 265 9.21e-25 105
MS.gene39494.t1 AT4G15090 34.752 141 85 1 182 322 373 506 1.35e-21 95.9
MS.gene39494.t1 AT3G22170 42.056 107 62 0 216 322 409 515 4.00e-21 94.7
MS.gene39494.t1 AT3G22170 27.273 231 130 5 1 215 66 274 8.98e-15 75.5
MS.gene39494.t1 AT3G22170 42.056 107 62 0 216 322 409 515 4.00e-21 94.7
MS.gene39494.t1 AT3G22170 27.273 231 130 5 1 215 66 274 8.98e-15 75.5
MS.gene39494.t1 AT1G76320 27.928 222 153 3 9 229 1 216 2.44e-20 92.0
MS.gene39494.t1 AT1G76320 37.273 110 69 0 213 322 334 443 4.39e-18 85.5
MS.gene39494.t1 AT1G76320 27.928 222 153 3 9 229 1 216 2.60e-20 92.0
MS.gene39494.t1 AT1G76320 37.273 110 69 0 213 322 334 443 4.48e-18 85.5
MS.gene39494.t1 AT1G76320 27.928 222 153 3 9 229 1 216 2.60e-20 92.0
MS.gene39494.t1 AT1G76320 37.273 110 69 0 213 322 334 443 4.48e-18 85.5
MS.gene39494.t1 AT1G76320 27.928 222 153 3 9 229 1 216 3.14e-20 91.7
MS.gene39494.t1 AT1G76320 37.273 110 69 0 213 322 334 443 3.74e-18 85.5
MS.gene39494.t1 AT4G38170 34.579 107 70 0 216 322 189 295 8.29e-20 90.5
MS.gene39494.t1 AT2G27110 38.679 106 63 1 216 321 226 329 8.22e-19 87.4
MS.gene39494.t1 AT2G27110 38.679 106 63 1 216 321 371 474 9.05e-19 87.4
MS.gene39494.t1 AT2G27110 28.910 211 119 8 9 215 53 236 3.97e-13 70.5
MS.gene39494.t1 AT2G27110 38.679 106 63 1 216 321 371 474 9.05e-19 87.4
MS.gene39494.t1 AT2G27110 28.910 211 119 8 9 215 53 236 3.97e-13 70.5
MS.gene39494.t1 AT1G52520 29.185 233 148 7 9 238 89 307 3.18e-18 85.9
MS.gene39494.t1 AT1G52520 32.653 98 64 1 216 311 420 517 1.48e-13 71.6
MS.gene39494.t1 AT1G80010 27.778 216 142 5 9 214 99 310 2.18e-14 74.3
MS.gene39494.t1 AT2G32250 33.628 113 73 1 210 322 299 409 4.89e-13 70.1
MS.gene39494.t1 AT2G32250 33.628 113 73 1 210 322 299 409 4.90e-13 70.1
MS.gene39494.t1 AT2G32250 33.628 113 73 1 210 322 340 450 5.11e-13 70.1
MS.gene39494.t1 AT2G32250 33.628 113 73 1 210 322 340 450 5.22e-13 70.1
MS.gene39494.t1 AT2G32250 33.628 113 73 1 210 322 340 450 5.22e-13 70.1
MS.gene39494.t1 AT2G32250 33.628 113 73 1 210 322 340 450 5.22e-13 70.1
MS.gene39494.t1 AT4G19990 35.443 79 51 0 216 294 348 426 5.33e-13 70.1
MS.gene39494.t1 AT4G19990 35.443 79 51 0 216 294 348 426 5.33e-13 70.1
MS.gene39494.t1 AT4G19990 35.443 79 51 0 216 294 348 426 5.72e-13 70.1
MS.gene39494.t1 AT2G32250 33.628 113 73 1 210 322 340 450 5.82e-13 70.1
MS.gene39494.t1 AT2G32250 33.628 113 73 1 210 322 340 450 5.82e-13 70.1
MS.gene39494.t1 AT4G19990 35.443 79 51 0 216 294 362 440 5.82e-13 70.1
MS.gene39494.t1 AT4G19990 35.443 79 51 0 216 294 291 369 5.91e-13 70.1
MS.gene39494.t1 AT4G19990 35.443 79 51 0 216 294 348 426 6.95e-13 69.7
MS.gene39494.t1 AT4G19990 35.443 79 51 0 216 294 348 426 6.95e-13 69.7
MS.gene39494.t1 AT3G06250 36.170 94 57 1 216 309 497 587 7.41e-12 66.6
MS.gene39494.t1 AT3G06250 36.170 94 57 1 216 309 497 587 7.41e-12 66.6
MS.gene39494.t1 AT3G06250 36.170 94 57 1 216 309 497 587 7.41e-12 66.6
MS.gene39494.t1 AT5G18960 31.776 107 70 1 216 322 521 624 1.44e-11 65.9
MS.gene39494.t1 AT5G18960 31.776 107 70 1 216 322 521 624 1.44e-11 65.9

Find 48 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTATTTCATAGAAGAAATT+TGG 0.144552 4.2:+22631126 None:intergenic
CTCACATCTCTTTCATTAAA+TGG 0.147918 4.2:+22631240 None:intergenic
TTGAACAACCTTGCCTTTCT+AGG 0.207197 4.2:+22631384 None:intergenic
TGTATAACGAACGTCATAAA+TGG 0.226594 4.2:-22630582 MS.gene39494:CDS
TTCATGTAAGGAATGTCTTT+TGG 0.251842 4.2:-22631089 MS.gene39494:CDS
TTTCTTCTATGAAATAGATT+TGG 0.305934 4.2:-22631121 MS.gene39494:CDS
AGTATACACGCTTTCTTTGA+TGG 0.331302 4.2:-22630499 MS.gene39494:CDS
TGTATCAAGTTGAATGCATA+TGG 0.341145 4.2:-22631456 MS.gene39494:CDS
TTGAGCTTCAACAAAATCAT+TGG 0.360559 4.2:-22630615 MS.gene39494:CDS
AACAAGGAACGACTTGCAAT+TGG 0.415503 4.2:-22631207 MS.gene39494:CDS
TGAATACCACAATTTCTTGC+GGG 0.415845 4.2:-22630375 MS.gene39494:CDS
TAGAGAATATGCTTTGAGAA+AGG 0.418901 4.2:-22631634 MS.gene39494:CDS
CAATCTCTTGTTAAAGATGC+AGG 0.428368 4.2:-22631279 MS.gene39494:CDS
AGAGAATATGCTTTGAGAAA+GGG 0.433857 4.2:-22631633 MS.gene39494:CDS
TGAACAACCTTGCCTTTCTA+GGG 0.439320 4.2:+22631385 None:intergenic
ACATCGAGAAAAGGAAATGA+TGG 0.450797 4.2:-22631591 MS.gene39494:CDS
TCGTTGAGTTGTTGACATAC+TGG 0.457690 4.2:+22630528 None:intergenic
CTGGTATGATGAGAATGATT+AGG 0.463235 4.2:+22631408 None:intergenic
GTATAACGAACGTCATAAAT+GGG 0.470238 4.2:-22630581 MS.gene39494:CDS
CAACCTTGCCTTTCTAGGGC+TGG 0.475224 4.2:+22631389 None:intergenic
TAGAAAGGCAAGGTTGTTCA+AGG 0.476356 4.2:-22631382 MS.gene39494:CDS
CAACAAAATCATTGGTTGAG+TGG 0.477407 4.2:-22630607 MS.gene39494:CDS
TTGAAGTCACGTCCGACAAT+GGG 0.482433 4.2:-22631501 MS.gene39494:CDS
TCTTGCATGCACAAGAGATC+GGG 0.494449 4.2:-22631550 MS.gene39494:CDS
TTCTTGCATGCACAAGAGAT+CGG 0.495746 4.2:-22631551 MS.gene39494:CDS
TCATCATACCAGCCCTAGAA+AGG 0.496553 4.2:-22631397 MS.gene39494:CDS
AAGATTAGAACATCGAGAAA+AGG 0.501177 4.2:-22631600 MS.gene39494:CDS
CGACTTGCAATTGGAAAAGA+AGG 0.505598 4.2:-22631198 MS.gene39494:CDS
ATCTTTAACAAGAGATTGAA+AGG 0.541832 4.2:+22631284 None:intergenic
ATATAGACTTGCATGTAAAG+AGG 0.546836 4.2:-22631350 MS.gene39494:CDS
AACTTGATACAAATCTTAGC+AGG 0.547189 4.2:+22631468 None:intergenic
ATTGAAGTCACGTCCGACAA+TGG 0.552348 4.2:-22631502 MS.gene39494:CDS
CATCGAGAAAAGGAAATGAT+GGG 0.554779 4.2:-22631590 MS.gene39494:CDS
GTTTGACCCGCAAGAAATTG+TGG 0.569261 4.2:+22630369 None:intergenic
ATGAATACCACAATTTCTTG+CGG 0.580755 4.2:-22630376 MS.gene39494:CDS
CTCTTGTTAAAGATGCAGGC+GGG 0.627598 4.2:-22631275 MS.gene39494:CDS
TGAAGATGAAAATGCATGGT+GGG 0.636182 4.2:-22631707 None:intergenic
TGTGAGGAATTATGTTAACA+AGG 0.648059 4.2:-22631223 MS.gene39494:CDS
TGGAAAAGAAGGTGATGACA+AGG 0.649670 4.2:-22631187 MS.gene39494:CDS
ATCGAGAAAAGGAAATGATG+GGG 0.649742 4.2:-22631589 MS.gene39494:CDS
TCTCTTGTTAAAGATGCAGG+CGG 0.654412 4.2:-22631276 MS.gene39494:CDS
AGTTGAATGCATATGGATTG+TGG 0.657596 4.2:-22631449 MS.gene39494:CDS
ATGTTGAAGATGAAAATGCA+TGG 0.668402 4.2:-22631711 None:intergenic
ATACCAGCCCTAGAAAGGCA+AGG 0.674438 4.2:-22631392 MS.gene39494:CDS
GAGAAAAGGAAATGATGGGG+AGG 0.686066 4.2:-22631586 MS.gene39494:CDS
TTGAAGATGAAAATGCATGG+TGG 0.702217 4.2:-22631708 None:intergenic
TCAATGATGATGCAGATGTG+AGG 0.702535 4.2:-22631317 MS.gene39494:CDS
CATTTAATGAAAGAGATGTG+AGG 0.724148 4.2:-22631239 MS.gene39494:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTCTTAAGAAAATATTTTT+GGG - chr4.2:22631496-22631515 MS.gene39494:CDS 15.0%
!! TCTATTTCATAGAAGAAATT+TGG + chr4.2:22630924-22630943 None:intergenic 20.0%
!! TTGACAAAAATAGTTTATCA+AGG + chr4.2:22630886-22630905 None:intergenic 20.0%
!! TTTCTTCTATGAAATAGATT+TGG - chr4.2:22630926-22630945 MS.gene39494:intron 20.0%
!!! AAACTATTTTTGTCAAATGA+GGG - chr4.2:22630890-22630909 MS.gene39494:intron 20.0%
!!! AAATATTTTCTTAAGAAGGT+TGG + chr4.2:22631494-22631513 None:intergenic 20.0%
!!! CCAAAAATATTTTCTTAAGA+AGG + chr4.2:22631498-22631517 None:intergenic 20.0%
!!! CCTTCTTAAGAAAATATTTT+TGG - chr4.2:22631495-22631514 MS.gene39494:CDS 20.0%
!!! TAAACTATTTTTGTCAAATG+AGG - chr4.2:22630889-22630908 MS.gene39494:intron 20.0%
! ATCTTTAACAAGAGATTGAA+AGG + chr4.2:22630766-22630785 None:intergenic 25.0%
!! AAAAGGCATATCATATTTGT+TGG + chr4.2:22631054-22631073 None:intergenic 25.0%
!! TAGAAAAACACATCTGTTTT+AGG + chr4.2:22630368-22630387 None:intergenic 25.0%
!!! TAGATGATTTTGAAGAGAAA+TGG - chr4.2:22631390-22631409 MS.gene39494:CDS 25.0%
!!! TTGTATGGCTTTTTAATTCA+TGG - chr4.2:22631156-22631175 MS.gene39494:CDS 25.0%
AAAATTGCTGAAAAACTCAG+CGG - chr4.2:22631305-22631324 MS.gene39494:CDS 30.0%
AACTTGATACAAATCTTAGC+AGG + chr4.2:22630582-22630601 None:intergenic 30.0%
AAGATTAGAACATCGAGAAA+AGG - chr4.2:22630447-22630466 MS.gene39494:CDS 30.0%
AATCAACATTACTTGGATGT+GGG - chr4.2:22631105-22631124 MS.gene39494:CDS 30.0%
ATATAGACTTGCATGTAAAG+AGG - chr4.2:22630697-22630716 MS.gene39494:intron 30.0%
ATGAATACCACAATTTCTTG+CGG - chr4.2:22631671-22631690 MS.gene39494:CDS 30.0%
CATTTAATGAAAGAGATGTG+AGG - chr4.2:22630808-22630827 MS.gene39494:intron 30.0%
CTCACATCTCTTTCATTAAA+TGG + chr4.2:22630810-22630829 None:intergenic 30.0%
GTATAACGAACGTCATAAAT+GGG - chr4.2:22631466-22631485 MS.gene39494:CDS 30.0%
TGTATAACGAACGTCATAAA+TGG - chr4.2:22631465-22631484 MS.gene39494:CDS 30.0%
TGTGAGGAATTATGTTAACA+AGG - chr4.2:22630824-22630843 MS.gene39494:intron 30.0%
TTGAGCTTCAACAAAATCAT+TGG - chr4.2:22631432-22631451 MS.gene39494:CDS 30.0%
! TCATGTAAGGAATGTCTTTT+GGG - chr4.2:22630959-22630978 MS.gene39494:intron 30.0%
! TTCATGTAAGGAATGTCTTT+TGG - chr4.2:22630958-22630977 MS.gene39494:intron 30.0%
!! AAGCTCAAATTTTTCGATGA+AGG + chr4.2:22631420-22631439 None:intergenic 30.0%
!! AGAGAATATGCTTTGAGAAA+GGG - chr4.2:22630414-22630433 MS.gene39494:CDS 30.0%
!! TAGAGAATATGCTTTGAGAA+AGG - chr4.2:22630413-22630432 MS.gene39494:CDS 30.0%
!! TGTATCAAGTTGAATGCATA+TGG - chr4.2:22630591-22630610 MS.gene39494:CDS 30.0%
AAATTGCTGAAAAACTCAGC+GGG - chr4.2:22631306-22631325 MS.gene39494:CDS 35.0%
AAGACAAAGAGTCGTTTGTA+TGG - chr4.2:22631141-22631160 MS.gene39494:CDS 35.0%
ACACCAACAAAAACAGCAAA+AGG + chr4.2:22631071-22631090 None:intergenic 35.0%
ACATCGAGAAAAGGAAATGA+TGG - chr4.2:22630456-22630475 MS.gene39494:CDS 35.0%
AGTATACACGCTTTCTTTGA+TGG - chr4.2:22631548-22631567 MS.gene39494:CDS 35.0%
ATCGAGAAAAGGAAATGATG+GGG - chr4.2:22630458-22630477 MS.gene39494:CDS 35.0%
CAATCAACATTACTTGGATG+TGG - chr4.2:22631104-22631123 MS.gene39494:CDS 35.0%
CAATCTCTTGTTAAAGATGC+AGG - chr4.2:22630768-22630787 MS.gene39494:intron 35.0%
CATCGAGAAAAGGAAATGAT+GGG - chr4.2:22630457-22630476 MS.gene39494:CDS 35.0%
CATGGTCAATCAACATTACT+TGG - chr4.2:22631098-22631117 MS.gene39494:CDS 35.0%
CTGGTATGATGAGAATGATT+AGG + chr4.2:22630642-22630661 None:intergenic 35.0%
TATTGTGACTGACCAATGTA+AGG - chr4.2:22631211-22631230 MS.gene39494:CDS 35.0%
TGAATACCACAATTTCTTGC+GGG - chr4.2:22631672-22631691 MS.gene39494:CDS 35.0%
! AGGGTTGCTTATGAGTATTT+TGG - chr4.2:22630996-22631015 MS.gene39494:intron 35.0%
! AGTTGAATGCATATGGATTG+TGG - chr4.2:22630598-22630617 MS.gene39494:CDS 35.0%
! ATTCTTTTTCTGCTCGACTT+CGG + chr4.2:22631631-22631650 None:intergenic 35.0%
! CAACAAAATCATTGGTTGAG+TGG - chr4.2:22631440-22631459 MS.gene39494:CDS 35.0%
! CAAGTAATGTTGATTGACCA+TGG + chr4.2:22631100-22631119 None:intergenic 35.0%
! CATTTTGCATTGCCTTACAT+TGG + chr4.2:22631226-22631245 None:intergenic 35.0%
! TGGATGACGATTTTCATGTA+AGG - chr4.2:22630946-22630965 MS.gene39494:intron 35.0%
!! CTTTGAGAAAGGGTTTTGAT+TGG - chr4.2:22630424-22630443 MS.gene39494:CDS 35.0%
!!! ATGCCTTTTGCTGTTTTTGT+TGG - chr4.2:22631065-22631084 MS.gene39494:intron 35.0%
AACAAGGAACGACTTGCAAT+TGG - chr4.2:22630840-22630859 MS.gene39494:intron 40.0%
CGACTTGCAATTGGAAAAGA+AGG - chr4.2:22630849-22630868 MS.gene39494:intron 40.0%
GCGGGTATGGTGATTATAAA+AGG - chr4.2:22631324-22631343 MS.gene39494:CDS 40.0%
TAGAAAGGCAAGGTTGTTCA+AGG - chr4.2:22630665-22630684 MS.gene39494:intron 40.0%
TCATGGCTTCGTTATATGCT+AGG - chr4.2:22631173-22631192 MS.gene39494:CDS 40.0%
TCTCTTGTTAAAGATGCAGG+CGG - chr4.2:22630771-22630790 MS.gene39494:intron 40.0%
TGAACAACCTTGCCTTTCTA+GGG + chr4.2:22630665-22630684 None:intergenic 40.0%
TGGAAAAGAAGGTGATGACA+AGG - chr4.2:22630860-22630879 MS.gene39494:intron 40.0%
TTCTTGCATGCACAAGAGAT+CGG - chr4.2:22630496-22630515 MS.gene39494:CDS 40.0%
TTGAACAACCTTGCCTTTCT+AGG + chr4.2:22630666-22630685 None:intergenic 40.0%
TTTGTTGGTGTGAATCACCA+TGG - chr4.2:22631080-22631099 MS.gene39494:CDS 40.0%
! TCAATGATGATGCAGATGTG+AGG - chr4.2:22630730-22630749 MS.gene39494:intron 40.0%
! TCGTTGAGTTGTTGACATAC+TGG + chr4.2:22631522-22631541 None:intergenic 40.0%
!! GGACAACTTTTTCCCATTGT+CGG + chr4.2:22630561-22630580 None:intergenic 40.0%
ATTGAAGTCACGTCCGACAA+TGG - chr4.2:22630545-22630564 MS.gene39494:CDS 45.0%
CTCTTGTTAAAGATGCAGGC+GGG - chr4.2:22630772-22630791 MS.gene39494:intron 45.0%
GGCAATGCAAAATGCAATCG+AGG - chr4.2:22631232-22631251 MS.gene39494:CDS 45.0%
GGTCAGTCACAATACCAACA+GGG + chr4.2:22631205-22631224 None:intergenic 45.0%
GTCAGTCACAATACCAACAG+GGG + chr4.2:22631204-22631223 None:intergenic 45.0%
GTTTGACCCGCAAGAAATTG+TGG + chr4.2:22631681-22631700 None:intergenic 45.0%
TATGCCATAAACACCACCTG+TGG + chr4.2:22631277-22631296 None:intergenic 45.0%
TCAGTCACAATACCAACAGG+GGG + chr4.2:22631203-22631222 None:intergenic 45.0%
TCATCATACCAGCCCTAGAA+AGG - chr4.2:22630650-22630669 MS.gene39494:CDS 45.0%
TCTTGCATGCACAAGAGATC+GGG - chr4.2:22630497-22630516 MS.gene39494:CDS 45.0%
TGGTCAGTCACAATACCAAC+AGG + chr4.2:22631206-22631225 None:intergenic 45.0%
TTGAAGTCACGTCCGACAAT+GGG - chr4.2:22630546-22630565 MS.gene39494:CDS 45.0%
TTGGGCTGATGCAAGAAGTA+GGG - chr4.2:22630977-22630996 MS.gene39494:intron 45.0%
TTTGGGCTGATGCAAGAAGT+AGG - chr4.2:22630976-22630995 MS.gene39494:intron 45.0%
! ACTTGGATGTGGGTTGCTAT+CGG - chr4.2:22631115-22631134 MS.gene39494:CDS 45.0%
! GAGAAAAGGAAATGATGGGG+AGG - chr4.2:22630461-22630480 MS.gene39494:CDS 45.0%
ATACCAGCCCTAGAAAGGCA+AGG - chr4.2:22630655-22630674 MS.gene39494:CDS 50.0%
GCTGAAAAACTCAGCGGGTA+TGG - chr4.2:22631311-22631330 MS.gene39494:CDS 50.0%
! TTTTCCCTACAACTCGCCAC+AGG - chr4.2:22631258-22631277 MS.gene39494:CDS 50.0%
ACCACCTGTGGCGAGTTGTA+GGG + chr4.2:22631265-22631284 None:intergenic 55.0%
ATGCTAGGAAAGCCCCCTGT+TGG - chr4.2:22631188-22631207 MS.gene39494:CDS 55.0%
CTCGCCACAGGTGGTGTTTA+TGG - chr4.2:22631270-22631289 MS.gene39494:CDS 55.0%
!! CAACCTTGCCTTTCTAGGGC+TGG + chr4.2:22630661-22630680 None:intergenic 55.0%
CACCACCTGTGGCGAGTTGT+AGG + chr4.2:22631266-22631285 None:intergenic 60.0%
TCCCTACAACTCGCCACAGG+TGG - chr4.2:22631261-22631280 MS.gene39494:CDS 60.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 22630351 22631718 22630351 ID=MS.gene39494
chr4.2 mRNA 22630351 22631718 22630351 ID=MS.gene39494.t1;Parent=MS.gene39494
chr4.2 exon 22631076 22631718 22631076 ID=MS.gene39494.t1.exon1;Parent=MS.gene39494.t1
chr4.2 CDS 22631076 22631718 22631076 ID=cds.MS.gene39494.t1;Parent=MS.gene39494.t1
chr4.2 exon 22630351 22630676 22630351 ID=MS.gene39494.t1.exon2;Parent=MS.gene39494.t1
chr4.2 CDS 22630351 22630676 22630351 ID=cds.MS.gene39494.t1;Parent=MS.gene39494.t1
Gene Sequence

>MS.gene39494

ATGCATGGTGGGAGCCTAAAACAGATGTGTTTTTCTAGCATAGATGATGTTAAATCATTTTATAGAGAATATGCTTTGAGAAAGGGTTTTGATTGGAAGATTAGAACATCGAGAAAAGGAAATGATGGGGAGGTATGCTACTTAATTCTTGCATGCACAAGAGATCGGGCTGAAGTGACGAAAAGTGTATCTACATTGAAGTCACGTCCGACAATGGGAAAAAGTTGTCCTGCTAAGATTTGTATCAAGTTGAATGCATATGGATTGTGGTACATTAAGAAATTTGAGCCTAATCATTCTCATCATACCAGCCCTAGAAAGGCAAGGTTGTTCAAGGCTAACAAGAATATAGACTTGCATGTAAAGAGGACAATTCAAATCAATGATGATGCAGATGTGAGGATCAACAAGACCTTTCAATCTCTTGTTAAAGATGCAGGCGGGCATGAAAATGTACCATTTAATGAAAGAGATGTGAGGAATTATGTTAACAAGGAACGACTTGCAATTGGAAAAGAAGGTGATGACAAGGCCTTGATAAACTATTTTTGTCAAATGAGGGAACAAAATCCAAATTTCTTCTATGAAATAGATTTGGATGACGATTTTCATGTAAGGAATGTCTTTTGGGCTGATGCAAGAAGTAGGGTTGCTTATGAGTATTTTGGAGATCTTGTAACTTTCGACACAACATATTTGACCAACAAATATGATATGCCTTTTGCTGTTTTTGTTGGTGTGAATCACCATGGTCAATCAACATTACTTGGATGTGGGTTGCTATCGGAAGAAGACAAAGAGTCGTTTGTATGGCTTTTTAATTCATGGCTTCGTTATATGCTAGGAAAGCCCCCTGTTGGTATTGTGACTGACCAATGTAAGGCAATGCAAAATGCAATCGAGGAAGTTTTCCCTACAACTCGCCACAGGTGGTGTTTATGGCATATAATGAAAAAAATTGCTGAAAAACTCAGCGGGTATGGTGATTATAAAAGGATTAAGTTTGCAATGAAAGAAGCTGTTTATGATACGTTCACAATAGATGATTTTGAAGAGAAATGGTGTTCCTTCATCGAAAAATTTGAGCTTCAACAAAATCATTGGTTGAGTGGATTGTATAACGAACGTCATAAATGGGTACCAACCTTCTTAAGAAAATATTTTTGGGCCAGTATGTCAACAACTCAACGAAGTGAGAGTATACACGCTTTCTTTGATGGTTATATCAATTCAACGACAAGTCTAAATCAATTTGTGAAACAATATGATAATGCTCTCCGAAGTCGAGCAGAAAAAGAATTTGAAGCAGATTTTAATTCGATGAATACCACAATTTCTTGCGGGTCAAACTCGTCAATTGAAAAGTAA
Protein sequence

>MS.gene39494.t1

MHGGSLKQMCFSSIDDVKSFYREYALRKGFDWKIRTSRKGNDGEVCYLILACTRDRAEVTKSVSTLKSRPTMGKSCPAKICIKLNAYGLWYIKKFEPNHSHHTSPRKARLFKANKNIDLHVKRTIQINDDADVRINKTFQSLVKDAGGHENVPFNERDVRNYVNKERLAIGKEGDDKALINYFCQMREQNPNFFYEIDLDDDFHVRNVFWADARNDFEEKWCSFIEKFELQQNHWLSGLYNERHKWVPTFLRKYFWASMSTTQRSESIHAFFDGYINSTTSLNQFVKQYDNALRSRAEKEFEADFNSMNTTISCGSNSSIEK