AlfalfaGEDB | MS.gene39494

M. sativa cultivar XinJiangDaYe / MS.gene39494

KEGG: -
GO: -
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39494.t1	XP_024642224.1	66.4	447	17	1	9	322	38	484	2.80E-157	564.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39494.t1	Q9SZL8	25.4	453	196	5	11	322	79	530	6.5e-38	159.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39494.t1	A0A2Z6M8U9	55.0	447	64	2	9	322	36	478	4.5e-125	457.2

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene39494.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39494.t1	MTR_0856s0010	93.496	123	8	0	9	131	38	160	5.21e-81	243
MS.gene39494.t1	MTR_7g115320	56.410	78	29	2	87	164	3	75	8.62e-22	88.2
MS.gene39494.t1	MTR_4g035820	26.557	305	205	11	11	300	81	381	1.37e-18	87.0
MS.gene39494.t1	MTR_1g008290	33.333	135	87	1	64	198	13	144	3.64e-17	77.4
MS.gene39494.t1	MTR_7g446060	39.785	93	53	2	80	171	1	91	5.46e-17	76.6
MS.gene39494.t1	MTR_1g083640	24.034	233	152	5	5	213	51	282	1.15e-13	70.5
MS.gene39494.t1	MTR_0558s0020	23.176	233	154	5	5	213	36	267	2.74e-13	69.7
MS.gene39494.t1	MTR_6g051425	26.056	142	104	1	75	215	94	235	3.39e-13	69.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39494.t1	AT4G38180	43.846	130	72	1	193	322	402	530	2.62e-30	121
MS.gene39494.t1	AT4G38180	29.858	211	140	4	11	214	79	288	9.56e-21	93.6
MS.gene39494.t1	AT4G15090	33.000	200	130	4	20	215	66	265	9.21e-25	105
MS.gene39494.t1	AT4G15090	34.752	141	85	1	182	322	373	506	1.35e-21	95.9
MS.gene39494.t1	AT4G15090	33.000	200	130	4	20	215	66	265	9.21e-25	105
MS.gene39494.t1	AT4G15090	34.752	141	85	1	182	322	373	506	1.35e-21	95.9
MS.gene39494.t1	AT4G15090	33.000	200	130	4	20	215	66	265	9.21e-25	105
MS.gene39494.t1	AT4G15090	34.752	141	85	1	182	322	373	506	1.35e-21	95.9
MS.gene39494.t1	AT4G15090	33.000	200	130	4	20	215	66	265	9.21e-25	105
MS.gene39494.t1	AT4G15090	34.752	141	85	1	182	322	373	506	1.35e-21	95.9

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Find 48 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGGAACGACTTGCAAT+TGG	0.415503	4.2:-22631207	MS.gene39494:CDS
AACTTGATACAAATCTTAGC+AGG	0.547189	4.2:+22631468	None:intergenic
AAGATTAGAACATCGAGAAA+AGG	0.501177	4.2:-22631600	MS.gene39494:CDS
ACATCGAGAAAAGGAAATGA+TGG	0.450797	4.2:-22631591	MS.gene39494:CDS
AGAGAATATGCTTTGAGAAA+GGG	0.433857	4.2:-22631633	MS.gene39494:CDS
AGTATACACGCTTTCTTTGA+TGG	0.331302	4.2:-22630499	MS.gene39494:CDS
AGTTGAATGCATATGGATTG+TGG	0.657596	4.2:-22631449	MS.gene39494:CDS
ATACCAGCCCTAGAAAGGCA+AGG	0.674438	4.2:-22631392	MS.gene39494:CDS
ATATAGACTTGCATGTAAAG+AGG	0.546836	4.2:-22631350	MS.gene39494:CDS
ATCGAGAAAAGGAAATGATG+GGG	0.649742	4.2:-22631589	MS.gene39494:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGCTGAAAAACTCAG+CGG	-	chr4.2:22631305-22631324	MS.gene39494:CDS	30.0%
AACTTGATACAAATCTTAGC+AGG	+	chr4.2:22630582-22630601	None:intergenic	30.0%
AAGATTAGAACATCGAGAAA+AGG	-	chr4.2:22630447-22630466	MS.gene39494:CDS	30.0%
AATCAACATTACTTGGATGT+GGG	-	chr4.2:22631105-22631124	MS.gene39494:CDS	30.0%
ATATAGACTTGCATGTAAAG+AGG	-	chr4.2:22630697-22630716	MS.gene39494:intron	30.0%
ATGAATACCACAATTTCTTG+CGG	-	chr4.2:22631671-22631690	MS.gene39494:CDS	30.0%
CATTTAATGAAAGAGATGTG+AGG	-	chr4.2:22630808-22630827	MS.gene39494:intron	30.0%
CTCACATCTCTTTCATTAAA+TGG	+	chr4.2:22630810-22630829	None:intergenic	30.0%
GTATAACGAACGTCATAAAT+GGG	-	chr4.2:22631466-22631485	MS.gene39494:CDS	30.0%
TGTATAACGAACGTCATAAA+TGG	-	chr4.2:22631465-22631484	MS.gene39494:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	22630351	22631718	22630351	ID=MS.gene39494
chr4.2	mRNA	22630351	22631718	22630351	ID=MS.gene39494.t1;Parent=MS.gene39494
chr4.2	exon	22631076	22631718	22631076	ID=MS.gene39494.t1.exon1;Parent=MS.gene39494.t1
chr4.2	CDS	22631076	22631718	22631076	ID=cds.MS.gene39494.t1;Parent=MS.gene39494.t1
chr4.2	exon	22630351	22630676	22630351	ID=MS.gene39494.t1.exon2;Parent=MS.gene39494.t1
chr4.2	CDS	22630351	22630676	22630351	ID=cds.MS.gene39494.t1;Parent=MS.gene39494.t1

Gene Sequence

>MS.gene39494

ATGCATGGTGGGAGCCTAAAACAGATGTGTTTTTCTAGCATAGATGATGTTAAATCATTTTATAGAGAATATGCTTTGAGAAAGGGTTTTGATTGGAAGATTAGAACATCGAGAAAAGGAAATGATGGGGAGGTATGCTACTTAATTCTTGCATGCACAAGAGATCGGGCTGAAGTGACGAAAAGTGTATCTACATTGAAGTCACGTCCGACAATGGGAAAAAGTTGTCCTGCTAAGATTTGTATCAAGTTGAATGCATATGGATTGTGGTACATTAAGAAATTTGAGCCTAATCATTCTCATCATACCAGCCCTAGAAAGGCAAGGTTGTTCAAGGCTAACAAGAATATAGACTTGCATGTAAAGAGGACAATTCAAATCAATGATGATGCAGATGTGAGGATCAACAAGACCTTTCAATCTCTTGTTAAAGATGCAGGCGGGCATGAAAATGTACCATTTAATGAAAGAGATGTGAGGAATTATGTTAACAAGGAACGACTTGCAATTGGAAAAGAAGGTGATGACAAGGCCTTGATAAACTATTTTTGTCAAATGAGGGAACAAAATCCAAATTTCTTCTATGAAATAGATTTGGATGACGATTTTCATGTAAGGAATGTCTTTTGGGCTGATGCAAGAAGTAGGGTTGCTTATGAGTATTTTGGAGATCTTGTAACTTTCGACACAACATATTTGACCAACAAATATGATATGCCTTTTGCTGTTTTTGTTGGTGTGAATCACCATGGTCAATCAACATTACTTGGATGTGGGTTGCTATCGGAAGAAGACAAAGAGTCGTTTGTATGGCTTTTTAATTCATGGCTTCGTTATATGCTAGGAAAGCCCCCTGTTGGTATTGTGACTGACCAATGTAAGGCAATGCAAAATGCAATCGAGGAAGTTTTCCCTACAACTCGCCACAGGTGGTGTTTATGGCATATAATGAAAAAAATTGCTGAAAAACTCAGCGGGTATGGTGATTATAAAAGGATTAAGTTTGCAATGAAAGAAGCTGTTTATGATACGTTCACAATAGATGATTTTGAAGAGAAATGGTGTTCCTTCATCGAAAAATTTGAGCTTCAACAAAATCATTGGTTGAGTGGATTGTATAACGAACGTCATAAATGGGTACCAACCTTCTTAAGAAAATATTTTTGGGCCAGTATGTCAACAACTCAACGAAGTGAGAGTATACACGCTTTCTTTGATGGTTATATCAATTCAACGACAAGTCTAAATCAATTTGTGAAACAATATGATAATGCTCTCCGAAGTCGAGCAGAAAAAGAATTTGAAGCAGATTTTAATTCGATGAATACCACAATTTCTTGCGGGTCAAACTCGTCAATTGAAAAGTAA

Protein sequence

>MS.gene39494.t1

MHGGSLKQMCFSSIDDVKSFYREYALRKGFDWKIRTSRKGNDGEVCYLILACTRDRAEVTKSVSTLKSRPTMGKSCPAKICIKLNAYGLWYIKKFEPNHSHHTSPRKARLFKANKNIDLHVKRTIQINDDADVRINKTFQSLVKDAGGHENVPFNERDVRNYVNKERLAIGKEGDDKALINYFCQMREQNPNFFYEIDLDDDFHVRNVFWADARNDFEEKWCSFIEKFELQQNHWLSGLYNERHKWVPTFLRKYFWASMSTTQRSESIHAFFDGYINSTTSLNQFVKQYDNALRSRAEKEFEADFNSMNTTISCGSNSSIEK