AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39543


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39543.t1 MTR_4g088070 72.093 387 86 6 1 380 1 372 4.88e-179 504
MS.gene39543.t1 MTR_4g088080 84.326 319 42 4 1 314 1 316 1.26e-177 497
MS.gene39543.t1 MTR_7g025010 57.729 414 138 9 4 386 3 410 3.82e-143 419
MS.gene39543.t1 MTR_2g015000 36.591 440 184 17 1 380 1 405 3.72e-58 196
MS.gene39543.t1 MTR_3g462480 69.118 68 21 0 313 380 22 89 3.07e-26 101
MS.gene39543.t1 MTR_4g088065 50.505 99 47 2 52 148 134 232 5.53e-20 89.0
MS.gene39543.t1 MTR_6g027390 60.000 60 24 0 35 94 24 83 1.69e-19 88.6
MS.gene39543.t1 MTR_7g086940 55.714 70 28 1 23 92 11 77 1.14e-17 82.8
MS.gene39543.t1 MTR_4g084550 38.750 80 49 0 24 103 45 124 1.62e-14 71.6
MS.gene39543.t1 MTR_5g081990 33.813 139 71 4 18 138 11 146 2.61e-13 68.2
MS.gene39543.t1 MTR_8g107210 40.000 80 44 1 43 122 96 171 2.43e-12 68.2
MS.gene39543.t1 MTR_1g019130 31.757 148 85 2 2 143 59 196 1.23e-11 64.3
MS.gene39543.t1 MTR_5g021930 31.206 141 68 3 43 154 30 170 1.31e-11 65.5
MS.gene39543.t1 MTR_1g115315 43.333 60 34 0 41 100 83 142 1.63e-11 64.7
MS.gene39543.t1 MTR_1g115315 43.333 60 34 0 41 100 83 142 1.68e-11 64.7
MS.gene39543.t1 MTR_0777s0020 56.364 55 23 1 76 129 50 104 7.62e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39543.t1 AT2G33880 55.435 92 41 0 9 100 21 112 1.18e-28 115
MS.gene39543.t1 AT2G33880 55.435 92 41 0 9 100 21 112 1.22e-28 115
MS.gene39543.t1 AT5G45980 65.152 66 23 0 35 100 47 112 2.73e-24 102
MS.gene39543.t1 AT5G17810 62.963 54 20 0 41 94 19 72 4.54e-18 84.0
MS.gene39543.t1 AT5G17810 62.963 54 20 0 41 94 19 72 4.57e-18 84.0
MS.gene39543.t1 AT5G17810 62.963 54 20 0 41 94 19 72 4.57e-18 84.0
MS.gene39543.t1 AT3G03660 61.111 54 21 0 41 94 31 84 1.08e-17 82.8
MS.gene39543.t1 AT3G03660 61.111 54 21 0 41 94 31 84 1.71e-17 82.8
MS.gene39543.t1 AT3G03660 61.111 54 21 0 41 94 31 84 2.46e-17 82.4
MS.gene39543.t1 AT3G03660 61.111 54 21 0 41 94 31 84 3.58e-17 82.0
MS.gene39543.t1 AT2G17950 41.975 81 45 2 43 122 38 117 1.14e-12 68.6
MS.gene39543.t1 AT5G05770 37.333 75 42 1 43 112 29 103 9.87e-12 62.4
MS.gene39543.t1 AT3G18010 42.623 61 35 0 43 103 76 136 1.16e-11 65.9
MS.gene39543.t1 AT1G20700 45.000 60 33 0 41 100 31 90 1.18e-11 62.8
MS.gene39543.t1 AT1G20700 42.857 63 36 0 41 103 93 155 2.07e-11 63.5
MS.gene39543.t1 AT1G20700 42.857 63 36 0 41 103 93 155 2.18e-11 63.2
MS.gene39543.t1 AT4G35550 41.270 63 37 0 41 103 97 159 8.52e-11 62.4

Find 117 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGACCCACAACTTAATTT+TGG 0.181827 4.2:-23224764 MS.gene39543:CDS
TGTTTCCTGTTTCTTGTTAT+AGG 0.203606 4.2:+23225249 None:intergenic
CGTGGACAATTAGAAGAATT+TGG 0.217411 4.2:-23225343 MS.gene39543:CDS
GGTAGGGATTGACTCATATT+TGG 0.224718 4.2:+23224917 None:intergenic
AAGAATTTACGAACGTTAAA+AGG 0.235477 4.2:+23224178 None:intergenic
TCATCTTCCTCTAACAATAT+TGG 0.243443 4.2:-23225160 MS.gene39543:CDS
GTTTCCTGTTTCTTGTTATA+GGG 0.246182 4.2:+23225250 None:intergenic
CCATGGGGCTGATTATTTCC+TGG 0.287811 4.2:-23224074 MS.gene39543:intron
GATAAGTACCACCTTGGTTT+TGG 0.292529 4.2:+23225077 None:intergenic
TTTAACGTTCGTAAATTCTT+TGG 0.298436 4.2:-23224175 MS.gene39543:CDS
AGAGAGATTGCAGGTGAATT+AGG 0.299501 4.2:+23225103 None:intergenic
CACCGTCCCATCATTAATAT+TGG 0.306396 4.2:+23225132 None:intergenic
TGCGGATTTGCTCAGGCTTT+GGG 0.317008 4.2:+23225428 None:intergenic
ATGCGGATTTGCTCAGGCTT+TGG 0.318582 4.2:+23225427 None:intergenic
TCAGGCTTTGGGATCCATCT+TGG 0.322557 4.2:+23225439 None:intergenic
TTTGGGATCCATCTTGGCCT+TGG 0.327019 4.2:+23225445 None:intergenic
CTCAAAGCCATCTATAACTC+AGG 0.355199 4.2:-23225403 MS.gene39543:CDS
GGAGATTCCAATATTGTTAG+AGG 0.358018 4.2:+23225153 None:intergenic
CTTGTTATAGGGTACTTTGT+TGG 0.367143 4.2:+23225261 None:intergenic
CGTCATCCCTGAGTTATAGA+TGG 0.384216 4.2:+23225396 None:intergenic
TCATTAATATGATTCTCAAC+CGG 0.390844 4.2:+23224998 None:intergenic
AGTGGTGGTGTGGTGATTTG+TGG 0.396224 4.2:+23225196 None:intergenic
TTTACTGACGATCAATTTCA+AGG 0.398214 4.2:-23224644 MS.gene39543:intron
CCCCACTCATCGGTTAGAAC+CGG 0.406777 4.2:+23224118 None:intergenic
AACATCATGACCTATGGAAA+TGG 0.408768 4.2:-23224863 MS.gene39543:CDS
CCCTCAACTCACTCCACCAT+GGG 0.416100 4.2:-23224090 MS.gene39543:CDS
ATGCAGAAGATTCTGATTGT+TGG 0.417189 4.2:+23226071 None:intergenic
ATCCATCTTGGCCTTGGTCC+AGG 0.421536 4.2:+23225451 None:intergenic
CATTAATATGATTCTCAACC+GGG 0.432827 4.2:+23224999 None:intergenic
GGAATCTCCAATATTAATGA+TGG 0.434654 4.2:-23225139 MS.gene39543:CDS
AATTAAGTTGTGGGTCTTGT+TGG 0.440039 4.2:+23224768 None:intergenic
TTGAGAATGCGGATTTGCTC+AGG 0.441470 4.2:+23225421 None:intergenic
GTGGTGGTGTGGTGATTTGT+GGG 0.445822 4.2:+23225197 None:intergenic
CCTCACACCCTCACTGGAAC+CGG 0.457199 4.2:-23225055 MS.gene39543:CDS
CTGTATTAAGGAGCTGAAGC+TGG 0.458747 4.2:-23223611 MS.gene39543:intron
GATGATGAAGAAAGAACTCC+TGG 0.460723 4.2:-23225469 MS.gene39543:CDS
ACTTGACTCCTCCGGTGTCC+CGG 0.468788 4.2:-23224137 MS.gene39543:CDS
AGTACCCTATAACAAGAAAC+AGG 0.472976 4.2:-23225254 MS.gene39543:CDS
TATGATAACATCATGACCTA+TGG 0.476880 4.2:-23224869 MS.gene39543:CDS
CCCGGTTCTAACCGATGAGT+GGG 0.480119 4.2:-23224119 MS.gene39543:CDS
TTAGAAGAATTTGGACCGAT+TGG 0.480912 4.2:-23225334 MS.gene39543:CDS
TTGTCAATGGCCGGAGGGAG+AGG 0.492827 4.2:+23224695 None:intergenic
GAAATTGATCGTCAGTAAAG+AGG 0.493564 4.2:+23224648 None:intergenic
ATGATTCTCAACCGGGAAAG+AGG 0.494066 4.2:+23225006 None:intergenic
ATTTGTGGGAGAGAGCTGTC+TGG 0.494275 4.2:+23225211 None:intergenic
ACTTATCCTCACACCCTCAC+TGG 0.497083 4.2:-23225061 MS.gene39543:CDS
CTCCTGGACCAAGGCCAAGA+TGG 0.498721 4.2:-23225453 MS.gene39543:CDS
GTTCGTAAATTCTTTGGCGA+TGG 0.502140 4.2:-23224169 MS.gene39543:CDS
TAGTGCTTAATGACATGATA+AGG 0.507658 4.2:-23224970 MS.gene39543:CDS
TGAGAATCATATTAATGAAA+GGG 0.508209 4.2:-23224993 MS.gene39543:CDS
CCCCATGGTGGAGTGAGTTG+AGG 0.511520 4.2:+23224089 None:intergenic
AGCTGAAGCTGGAACGGCTA+GGG 0.512827 4.2:-23223600 MS.gene39543:CDS
ACGATGGTACAGCAAAATGT+AGG 0.522895 4.2:-23224240 MS.gene39543:CDS
TAAAGAGGAATGGAACATCA+TGG 0.526169 4.2:+23224663 None:intergenic
GGTACATTCAAAGTTAATGC+AGG 0.526348 4.2:-23224202 MS.gene39543:CDS
TTGAGAATCATATTAATGAA+AGG 0.528238 4.2:-23224994 MS.gene39543:CDS
TGACCAATGTACTTTCTTCG+AGG 0.532182 4.2:+23226128 None:intergenic
CCCATGGTGGAGTGAGTTGA+GGG 0.532190 4.2:+23224090 None:intergenic
TGAGCAGTTTCCATTTCCAT+AGG 0.532338 4.2:+23224853 None:intergenic
GAGAAGTAATTAAACCCCTC+TGG 0.532494 4.2:+23224947 None:intergenic
TGACACCAAAATTAAGTTGT+GGG 0.534770 4.2:+23224759 None:intergenic
AGAAAGTACATTGGTCAGAC+AGG 0.539026 4.2:-23226122 MS.gene39543:CDS
AAAGAGGAATGGAACATCAT+GGG 0.539927 4.2:+23224664 None:intergenic
ATGGGGTGCACTATTGTCAA+TGG 0.543487 4.2:+23224682 None:intergenic
TTGTAGACCGGTTCCAGTGA+GGG 0.546990 4.2:+23225048 None:intergenic
TGATCGTCAGTAAAGAGGAA+TGG 0.555879 4.2:+23224653 None:intergenic
TCCCGGTTCTAACCGATGAG+TGG 0.562878 4.2:-23224120 MS.gene39543:CDS
CTCCAATATTAATGATGGGA+CGG 0.566336 4.2:-23225134 MS.gene39543:CDS
TTAAGGAGCTGAAGCTGGAA+CGG 0.567945 4.2:-23223606 MS.gene39543:intron
CCCACTCATCGGTTAGAACC+GGG 0.569151 4.2:+23224119 None:intergenic
TATAGATGGCTTTGAGAATG+CGG 0.572647 4.2:+23225410 None:intergenic
ATCGGTTAGAACCGGGACAC+CGG 0.573165 4.2:+23224126 None:intergenic
ACCCTCAACTCACTCCACCA+TGG 0.573606 4.2:-23224091 MS.gene39543:CDS
GAATCTCCAATATTAATGAT+GGG 0.575519 4.2:-23225138 MS.gene39543:CDS
CGATGGTACAGCAAAATGTA+GGG 0.576909 4.2:-23224239 MS.gene39543:CDS
GCAGTTCTACTTGACTCCTC+CGG 0.578536 4.2:-23224145 MS.gene39543:CDS
TTGAAACCAATAAAAGACGC+TGG 0.582551 4.2:+23225306 None:intergenic
TGATCTTGCTCCTCTCCCTC+CGG 0.584114 4.2:-23224705 MS.gene39543:CDS
CCGGTTCCAGTGAGGGTGTG+AGG 0.585988 4.2:+23225055 None:intergenic
CACTATTGTCAATGGCCGGA+GGG 0.589288 4.2:+23224690 None:intergenic
GAGCTGAAGCTGGAACGGCT+AGG 0.596169 4.2:-23223601 MS.gene39543:CDS
GAGGGTGACACCCCACTCAT+CGG 0.597239 4.2:+23224108 None:intergenic
GACCAATGTACTTTCTTCGA+GGG 0.597684 4.2:+23226129 None:intergenic
AAGACGCTGGAATCACCAAT+CGG 0.600408 4.2:+23225319 None:intergenic
TTATCAAGAGAATATTCAAG+AGG 0.601533 4.2:-23224816 MS.gene39543:CDS
GGGTGTAGGTAGTTGTAGAC+CGG 0.604786 4.2:+23225036 None:intergenic
AACAATCAGAATCTTCTGCA+TGG 0.607678 4.2:-23226069 MS.gene39543:intron
TCAAAGCCATCTATAACTCA+GGG 0.608140 4.2:-23225402 MS.gene39543:CDS
GGTGCACTATTGTCAATGGC+CGG 0.610163 4.2:+23224686 None:intergenic
GTGACACCAAAATTAAGTTG+TGG 0.611199 4.2:+23224758 None:intergenic
AAAGAGGAAAACGAGGGTGT+AGG 0.613264 4.2:+23225022 None:intergenic
TGTAGGGTGATTACTATCAA+CGG 0.630138 4.2:-23224223 MS.gene39543:CDS
TGTGAGGATAAGTACCACCT+TGG 0.631687 4.2:+23225071 None:intergenic
GCACTATTGTCAATGGCCGG+AGG 0.634089 4.2:+23224689 None:intergenic
GGAAATAATCAGCCCCATGG+TGG 0.634153 4.2:+23224077 None:intergenic
GTACATTCAAAGTTAATGCA+GGG 0.634787 4.2:-23224201 MS.gene39543:CDS
GTTGTAGACCGGTTCCAGTG+AGG 0.637143 4.2:+23225047 None:intergenic
ATCTCTCTGAGCCAAAACCA+AGG 0.639915 4.2:-23225088 MS.gene39543:CDS
TATTAATGATGGGACGGTGA+TGG 0.642433 4.2:-23225128 MS.gene39543:CDS
AAGAAAGAACTCCTGGACCA+AGG 0.644218 4.2:-23225462 MS.gene39543:CDS
AAGAGGAATGGAACATCATG+GGG 0.652109 4.2:+23224665 None:intergenic
CTCCCTCGAAGAAAGTACAT+TGG 0.654219 4.2:-23226131 MS.gene39543:CDS
AGATGAGTTGAGTGGTGGTG+TGG 0.655150 4.2:+23225186 None:intergenic
CCAGGAAATAATCAGCCCCA+TGG 0.655999 4.2:+23224074 None:intergenic
TAATGACATGATAAGGCCAG+AGG 0.662717 4.2:-23224963 MS.gene39543:CDS
GGTTAGAACCGGGACACCGG+AGG 0.663701 4.2:+23224129 None:intergenic
TTCTTAATCTCATCTCTACG+TGG 0.679677 4.2:+23225370 None:intergenic
AATGACATGATAAGGCCAGA+GGG 0.681201 4.2:-23224962 MS.gene39543:CDS
ACCGGGAAAGAGGAAAACGA+GGG 0.684423 4.2:+23225016 None:intergenic
CCGGTTCTAACCGATGAGTG+GGG 0.684812 4.2:-23224118 MS.gene39543:CDS
AACCGGGAAAGAGGAAAACG+AGG 0.685255 4.2:+23225015 None:intergenic
ATGACATGATAAGGCCAGAG+GGG 0.698753 4.2:-23224961 MS.gene39543:CDS
GATGATGAAGATGAGTTGAG+TGG 0.699555 4.2:+23225178 None:intergenic
CCTCAACTCACTCCACCATG+GGG 0.702965 4.2:-23224089 MS.gene39543:CDS
GATGAGATTAAGAAGATACG+TGG 0.711435 4.2:-23225361 MS.gene39543:CDS
GATGAAGATGAGTTGAGTGG+TGG 0.726884 4.2:+23225181 None:intergenic
TCTCTGAGCCAAAACCAAGG+TGG 0.727096 4.2:-23225085 MS.gene39543:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATAATTATGGATTTAA+TGG - chr4.2:23225846-23225865 MS.gene39543:intron 10.0%
!! ATTAAATCCATAATTATATA+TGG + chr4.2:23225847-23225866 None:intergenic 10.0%
!!! TTATTTTCCATATATAATTA+TGG - chr4.2:23225837-23225856 MS.gene39543:intron 10.0%
!!! TTCTATAACTAATTTTTTAT+GGG + chr4.2:23224117-23224136 None:intergenic 10.0%
!!! TTTCTATAACTAATTTTTTA+TGG + chr4.2:23224118-23224137 None:intergenic 10.0%
!! ATTATGATTTATATATCTCA+TGG - chr4.2:23225361-23225380 MS.gene39543:CDS 15.0%
!!! AAACAAATTATATATCGATT+TGG - chr4.2:23223814-23223833 MS.gene39543:intron 15.0%
!!! AACAAATCTTTTTTATTGAA+TGG - chr4.2:23223877-23223896 MS.gene39543:intron 15.0%
!!! ATCAAAGTTATTTTTTTTGT+TGG - chr4.2:23226002-23226021 MS.gene39543:intron 15.0%
!! ATATAAATCATAATCATACC+CGG + chr4.2:23225355-23225374 None:intergenic 20.0%
!! TGAGAATCATATTAATGAAA+GGG - chr4.2:23224730-23224749 MS.gene39543:CDS 20.0%
!! TTCAAATATTCATCCTTAAT+TGG + chr4.2:23225155-23225174 None:intergenic 20.0%
!! TTGAGAATCATATTAATGAA+AGG - chr4.2:23224729-23224748 MS.gene39543:CDS 20.0%
!!! AATAGTTGATGTTTAGATTT+AGG + chr4.2:23223994-23224013 None:intergenic 20.0%
!!! GATATATAATTTGTTTCGAT+TGG + chr4.2:23223810-23223829 None:intergenic 20.0%
!!! TAGTAAAGATCAAATTTGTT+TGG + chr4.2:23223907-23223926 None:intergenic 20.0%
! AAAAAATATTTACACCCACA+AGG + chr4.2:23225876-23225895 None:intergenic 25.0%
! AAAAATTAGAAGGAGTTGTT+TGG + chr4.2:23223710-23223729 None:intergenic 25.0%
! AAAAATTGTTCAAACTAGCT+AGG + chr4.2:23225195-23225214 None:intergenic 25.0%
! AAGAATTTACGAACGTTAAA+AGG + chr4.2:23225548-23225567 None:intergenic 25.0%
! ATCAGAATATTAATACTCCA+TGG - chr4.2:23224139-23224158 MS.gene39543:CDS 25.0%
! GAATCTCCAATATTAATGAT+GGG - chr4.2:23224585-23224604 MS.gene39543:intron 25.0%
! GTGCTAAATAATTCCAATTA+AGG - chr4.2:23225139-23225158 MS.gene39543:CDS 25.0%
! TCATTAATATGATTCTCAAC+CGG + chr4.2:23224728-23224747 None:intergenic 25.0%
! TTATCAAGAGAATATTCAAG+AGG - chr4.2:23224907-23224926 MS.gene39543:CDS 25.0%
! TTATTTCGAAAATCACGTAT+AGG - chr4.2:23225933-23225952 MS.gene39543:intron 25.0%
! TTGCTTGACAATGTAAATTT+AGG - chr4.2:23224041-23224060 MS.gene39543:intron 25.0%
! TTTAACGTTCGTAAATTCTT+TGG - chr4.2:23225548-23225567 MS.gene39543:intron 25.0%
! TTTACATTGTCAAGCAAATA+TGG + chr4.2:23224038-23224057 None:intergenic 25.0%
!! AACTATTTGATCTTTTCCAA+TGG - chr4.2:23224007-23224026 MS.gene39543:intron 25.0%
!!! ATTTGGTTTTTTTCCTTGTT+GGG - chr4.2:23223831-23223850 MS.gene39543:intron 25.0%
!!! GCTTACGACAAATATTTTTT+AGG - chr4.2:23224227-23224246 MS.gene39543:CDS 25.0%
!!! TACGACAAATATTTTTTAGG+TGG - chr4.2:23224230-23224249 MS.gene39543:CDS 25.0%
!!! TTTCTTTTTCAGCTGTATTA+AGG - chr4.2:23226100-23226119 MS.gene39543:CDS 25.0%
ATAAGAAAAAATTGCAGACC+AGG + chr4.2:23225670-23225689 None:intergenic 30.0%
CATTAATATGATTCTCAACC+GGG + chr4.2:23224727-23224746 None:intergenic 30.0%
CTAAACTTTGCATGTTTGAT+TGG - chr4.2:23224205-23224224 MS.gene39543:CDS 30.0%
GATTTAATGGTATACCTTGT+GGG - chr4.2:23225859-23225878 MS.gene39543:intron 30.0%
GGAATCTCCAATATTAATGA+TGG - chr4.2:23224584-23224603 MS.gene39543:intron 30.0%
GTACATTCAAAGTTAATGCA+GGG - chr4.2:23225522-23225541 MS.gene39543:intron 30.0%
TAGTGCTTAATGACATGATA+AGG - chr4.2:23224753-23224772 MS.gene39543:CDS 30.0%
TATGATAACATCATGACCTA+TGG - chr4.2:23224854-23224873 MS.gene39543:CDS 30.0%
TCATCTTCCTCTAACAATAT+TGG - chr4.2:23224563-23224582 MS.gene39543:intron 30.0%
TTGCTTGAATGTGTGAATTT+AGG + chr4.2:23224088-23224107 None:intergenic 30.0%
TTTACTGACGATCAATTTCA+AGG - chr4.2:23225079-23225098 MS.gene39543:CDS 30.0%
! ATCAACATTTTCTTGAGGTA+GGG + chr4.2:23224825-23224844 None:intergenic 30.0%
! GTTTCCTGTTTCTTGTTATA+GGG + chr4.2:23224476-23224495 None:intergenic 30.0%
! TGACACCAAAATTAAGTTGT+GGG + chr4.2:23224967-23224986 None:intergenic 30.0%
! TGTTTCCTGTTTCTTGTTAT+AGG + chr4.2:23224477-23224496 None:intergenic 30.0%
!!! GATTTGGTTTTTTTCCTTGT+TGG - chr4.2:23223830-23223849 MS.gene39543:intron 30.0%
!!! TTTGGTTTTTTTCCTTGTTG+GGG - chr4.2:23223832-23223851 MS.gene39543:intron 30.0%
AAACCATTGAAGAGAGAAGA+GGG + chr4.2:23223687-23223706 None:intergenic 35.0%
AAAGAGGAATGGAACATCAT+GGG + chr4.2:23225062-23225081 None:intergenic 35.0%
AACAATCAGAATCTTCTGCA+TGG - chr4.2:23223654-23223673 MS.gene39543:intron 35.0%
AACATCATGACCTATGGAAA+TGG - chr4.2:23224860-23224879 MS.gene39543:CDS 35.0%
AATTGTTGTGTGTGTTTCTC+AGG - chr4.2:23225449-23225468 MS.gene39543:CDS 35.0%
AGTACCCTATAACAAGAAAC+AGG - chr4.2:23224469-23224488 MS.gene39543:intron 35.0%
ATGCAGAAGATTCTGATTGT+TGG + chr4.2:23223655-23223674 None:intergenic 35.0%
CGTGGACAATTAGAAGAATT+TGG - chr4.2:23224380-23224399 MS.gene39543:intron 35.0%
GAAATTGATCGTCAGTAAAG+AGG + chr4.2:23225078-23225097 None:intergenic 35.0%
GATGAGATTAAGAAGATACG+TGG - chr4.2:23224362-23224381 MS.gene39543:intron 35.0%
GGAGATTCCAATATTGTTAG+AGG + chr4.2:23224573-23224592 None:intergenic 35.0%
GGATTTAATGGTATACCTTG+TGG - chr4.2:23225858-23225877 MS.gene39543:intron 35.0%
GGTACATTCAAAGTTAATGC+AGG - chr4.2:23225521-23225540 MS.gene39543:intron 35.0%
TAAAGAGGAATGGAACATCA+TGG + chr4.2:23225063-23225082 None:intergenic 35.0%
TCAAAGCCATCTATAACTCA+GGG - chr4.2:23224321-23224340 MS.gene39543:intron 35.0%
TCATTACACTGTATGAACCA+TGG + chr4.2:23224159-23224178 None:intergenic 35.0%
TGTAGGGTGATTACTATCAA+CGG - chr4.2:23225500-23225519 MS.gene39543:intron 35.0%
TTAGAAGAATTTGGACCGAT+TGG - chr4.2:23224389-23224408 MS.gene39543:intron 35.0%
TTCTTAATCTCATCTCTACG+TGG + chr4.2:23224356-23224375 None:intergenic 35.0%
TTGAAACCAATAAAAGACGC+TGG + chr4.2:23224420-23224439 None:intergenic 35.0%
! AATTAAGTTGTGGGTCTTGT+TGG + chr4.2:23224958-23224977 None:intergenic 35.0%
! AGCAGATCAACATTTTCTTG+AGG + chr4.2:23224830-23224849 None:intergenic 35.0%
! ATACCCGGTGCTTTATATTT+TGG + chr4.2:23225340-23225359 None:intergenic 35.0%
! CAAGACCCACAACTTAATTT+TGG - chr4.2:23224959-23224978 MS.gene39543:CDS 35.0%
! CTCCAATATTAATGATGGGA+CGG - chr4.2:23224589-23224608 MS.gene39543:intron 35.0%
! CTTGTTATAGGGTACTTTGT+TGG + chr4.2:23224465-23224484 None:intergenic 35.0%
! GATCAACATTTTCTTGAGGT+AGG + chr4.2:23224826-23224845 None:intergenic 35.0%
! GTGACACCAAAATTAAGTTG+TGG + chr4.2:23224968-23224987 None:intergenic 35.0%
! TACCCGGTGCTTTATATTTT+GGG + chr4.2:23225339-23225358 None:intergenic 35.0%
!! TATAGATGGCTTTGAGAATG+CGG + chr4.2:23224316-23224335 None:intergenic 35.0%
!!! TTGGTTTTTTTCCTTGTTGG+GGG - chr4.2:23223833-23223852 MS.gene39543:intron 35.0%
AACCATTGAAGAGAGAAGAG+GGG + chr4.2:23223686-23223705 None:intergenic 40.0%
AAGAGGAATGGAACATCATG+GGG + chr4.2:23225061-23225080 None:intergenic 40.0%
AATGACATGATAAGGCCAGA+GGG - chr4.2:23224761-23224780 MS.gene39543:CDS 40.0%
ACGATGGTACAGCAAAATGT+AGG - chr4.2:23225483-23225502 MS.gene39543:intron 40.0%
AGAGAGATTGCAGGTGAATT+AGG + chr4.2:23224623-23224642 None:intergenic 40.0%
AGCAAATATGGTCAGACCAT+TGG + chr4.2:23224026-23224045 None:intergenic 40.0%
CACCGTCCCATCATTAATAT+TGG + chr4.2:23224594-23224613 None:intergenic 40.0%
CGATGGTACAGCAAAATGTA+GGG - chr4.2:23225484-23225503 MS.gene39543:intron 40.0%
CTCAAAGCCATCTATAACTC+AGG - chr4.2:23224320-23224339 MS.gene39543:intron 40.0%
CTCTCTTTCAAAGTGTAGAG+TGG - chr4.2:23225796-23225815 MS.gene39543:intron 40.0%
GAAACCATTGAAGAGAGAAG+AGG + chr4.2:23223688-23223707 None:intergenic 40.0%
GACCAATGTACTTTCTTCGA+GGG + chr4.2:23223597-23223616 None:intergenic 40.0%
GAGAAGTAATTAAACCCCTC+TGG + chr4.2:23224779-23224798 None:intergenic 40.0%
GATGATGAAGAAAGAACTCC+TGG - chr4.2:23224254-23224273 MS.gene39543:CDS 40.0%
GCTAGTCACTTCCTGAAAAA+CGG - chr4.2:23225255-23225274 MS.gene39543:CDS 40.0%
GTTCGTAAATTCTTTGGCGA+TGG - chr4.2:23225554-23225573 MS.gene39543:intron 40.0%
TAATGACATGATAAGGCCAG+AGG - chr4.2:23224760-23224779 MS.gene39543:CDS 40.0%
TGACCAATGTACTTTCTTCG+AGG + chr4.2:23223598-23223617 None:intergenic 40.0%
TGAGCAGTTTCCATTTCCAT+AGG + chr4.2:23224873-23224892 None:intergenic 40.0%
TGATCGTCAGTAAAGAGGAA+TGG + chr4.2:23225073-23225092 None:intergenic 40.0%
! ACCCGGTGCTTTATATTTTG+GGG + chr4.2:23225338-23225357 None:intergenic 40.0%
! AGAAAGTACATTGGTCAGAC+AGG - chr4.2:23223601-23223620 MS.gene39543:CDS 40.0%
! GATAAGTACCACCTTGGTTT+TGG + chr4.2:23224649-23224668 None:intergenic 40.0%
! GATGATGAAGATGAGTTGAG+TGG + chr4.2:23224548-23224567 None:intergenic 40.0%
! GGTAGGGATTGACTCATATT+TGG + chr4.2:23224809-23224828 None:intergenic 40.0%
! GTGATTCCAGCGTCTTTTAT+TGG - chr4.2:23224411-23224430 MS.gene39543:intron 40.0%
! TATTAATGATGGGACGGTGA+TGG - chr4.2:23224595-23224614 MS.gene39543:intron 40.0%
! TGTGTGTGTTTCTCAGGTTT+TGG - chr4.2:23225455-23225474 MS.gene39543:CDS 40.0%
!! GTCTAAACCTTCCGTTTTTC+AGG + chr4.2:23225269-23225288 None:intergenic 40.0%
!! TTTTCAGGAAGTGACTAGCT+AGG + chr4.2:23225254-23225273 None:intergenic 40.0%
AAGAAAGAACTCCTGGACCA+AGG - chr4.2:23224261-23224280 MS.gene39543:intron 45.0%
AAGACGCTGGAATCACCAAT+CGG + chr4.2:23224407-23224426 None:intergenic 45.0%
ATCTCTCTGAGCCAAAACCA+AGG - chr4.2:23224635-23224654 MS.gene39543:intron 45.0%
ATGACATGATAAGGCCAGAG+GGG - chr4.2:23224762-23224781 MS.gene39543:CDS 45.0%
ATGATTCTCAACCGGGAAAG+AGG + chr4.2:23224720-23224739 None:intergenic 45.0%
ATGGGGTGCACTATTGTCAA+TGG + chr4.2:23225044-23225063 None:intergenic 45.0%
CCCCCCAAAATATAAAGCAC+CGG - chr4.2:23225333-23225352 MS.gene39543:CDS 45.0%
CGTCATCCCTGAGTTATAGA+TGG + chr4.2:23224330-23224349 None:intergenic 45.0%
CGTTTATATGACCCCCAACA+AGG + chr4.2:23223847-23223866 None:intergenic 45.0%
CTGTATTAAGGAGCTGAAGC+TGG - chr4.2:23226112-23226131 MS.gene39543:CDS 45.0%
GTCACTTCCTGAAAAACGGA+AGG - chr4.2:23225259-23225278 MS.gene39543:CDS 45.0%
TGTGAGGATAAGTACCACCT+TGG + chr4.2:23224655-23224674 None:intergenic 45.0%
TTAAGGAGCTGAAGCTGGAA+CGG - chr4.2:23226117-23226136 MS.gene39543:CDS 45.0%
! AAAGAGGAAAACGAGGGTGT+AGG + chr4.2:23224704-23224723 None:intergenic 45.0%
! CCCCCAAAATATAAAGCACC+GGG - chr4.2:23225334-23225353 MS.gene39543:CDS 45.0%
! CTCCCTCGAAGAAAGTACAT+TGG - chr4.2:23223592-23223611 MS.gene39543:CDS 45.0%
! GATGAAGATGAGTTGAGTGG+TGG + chr4.2:23224545-23224564 None:intergenic 45.0%
! TTGAGAATGCGGATTTGCTC+AGG + chr4.2:23224305-23224324 None:intergenic 45.0%
!! CCCGGTGCTTTATATTTTGG+GGG + chr4.2:23225337-23225356 None:intergenic 45.0%
!! CCGGTGCTTTATATTTTGGG+GGG + chr4.2:23225336-23225355 None:intergenic 45.0%
!! GTGTTTCTCAGGTTTTGGTG+AGG - chr4.2:23225460-23225479 MS.gene39543:CDS 45.0%
!!! TTTTGGCTCAGAGAGATTGC+AGG + chr4.2:23224632-23224651 None:intergenic 45.0%
!! TAATAATAATAAAAATTAGA+AGG + chr4.2:23223720-23223739 None:intergenic 5.0%
AACCGGGAAAGAGGAAAACG+AGG + chr4.2:23224711-23224730 None:intergenic 50.0%
ACCGGGAAAGAGGAAAACGA+GGG + chr4.2:23224710-23224729 None:intergenic 50.0%
ACTTATCCTCACACCCTCAC+TGG - chr4.2:23224662-23224681 MS.gene39543:CDS 50.0%
ATTTGTGGGAGAGAGCTGTC+TGG + chr4.2:23224515-23224534 None:intergenic 50.0%
CACTATTGTCAATGGCCGGA+GGG + chr4.2:23225036-23225055 None:intergenic 50.0%
CCAGGAAATAATCAGCCCCA+TGG + chr4.2:23225652-23225671 None:intergenic 50.0%
CCATGGGGCTGATTATTTCC+TGG - chr4.2:23225649-23225668 MS.gene39543:intron 50.0%
CTCCCCTCTTCTCTCTTCAA+TGG - chr4.2:23223681-23223700 MS.gene39543:intron 50.0%
GCAGTTCTACTTGACTCCTC+CGG - chr4.2:23225578-23225597 MS.gene39543:intron 50.0%
GGAAATAATCAGCCCCATGG+TGG + chr4.2:23225649-23225668 None:intergenic 50.0%
GGGTGTAGGTAGTTGTAGAC+CGG + chr4.2:23224690-23224709 None:intergenic 50.0%
GGTGCACTATTGTCAATGGC+CGG + chr4.2:23225040-23225059 None:intergenic 50.0%
TCTCTGAGCCAAAACCAAGG+TGG - chr4.2:23224638-23224657 MS.gene39543:intron 50.0%
! ACCCTCGTTTTCCTCTTTCC+CGG - chr4.2:23224706-23224725 MS.gene39543:CDS 50.0%
! AGATGAGTTGAGTGGTGGTG+TGG + chr4.2:23224540-23224559 None:intergenic 50.0%
! AGTGGTGGTGTGGTGATTTG+TGG + chr4.2:23224530-23224549 None:intergenic 50.0%
! ATGCGGATTTGCTCAGGCTT+TGG + chr4.2:23224299-23224318 None:intergenic 50.0%
! GTGGTGGTGTGGTGATTTGT+GGG + chr4.2:23224529-23224548 None:intergenic 50.0%
! TGCGGATTTGCTCAGGCTTT+GGG + chr4.2:23224298-23224317 None:intergenic 50.0%
! TTGTAGACCGGTTCCAGTGA+GGG + chr4.2:23224678-23224697 None:intergenic 50.0%
! TTTGGGATCCATCTTGGCCT+TGG + chr4.2:23224281-23224300 None:intergenic 50.0%
!! TCAGGCTTTGGGATCCATCT+TGG + chr4.2:23224287-23224306 None:intergenic 50.0%
!! TCAGGTTTTGGTGAGGACGA+TGG - chr4.2:23225467-23225486 MS.gene39543:CDS 50.0%
ACCCTCAACTCACTCCACCA+TGG - chr4.2:23225632-23225651 MS.gene39543:intron 55.0%
AGCTGAAGCTGGAACGGCTA+GGG - chr4.2:23226123-23226142 MS.gene39543:CDS 55.0%
ATCGGTTAGAACCGGGACAC+CGG + chr4.2:23225600-23225619 None:intergenic 55.0%
CCCTCAACTCACTCCACCAT+GGG - chr4.2:23225633-23225652 MS.gene39543:intron 55.0%
CCTCAACTCACTCCACCATG+GGG - chr4.2:23225634-23225653 MS.gene39543:intron 55.0%
GCACTATTGTCAATGGCCGG+AGG + chr4.2:23225037-23225056 None:intergenic 55.0%
TGATCTTGCTCCTCTCCCTC+CGG - chr4.2:23225018-23225037 MS.gene39543:CDS 55.0%
! CCCACTCATCGGTTAGAACC+GGG + chr4.2:23225607-23225626 None:intergenic 55.0%
! CCCATGGTGGAGTGAGTTGA+GGG + chr4.2:23225636-23225655 None:intergenic 55.0%
! CCCCACTCATCGGTTAGAAC+CGG + chr4.2:23225608-23225627 None:intergenic 55.0%
! CCCGGTTCTAACCGATGAGT+GGG - chr4.2:23225604-23225623 MS.gene39543:intron 55.0%
! CCGGTTCTAACCGATGAGTG+GGG - chr4.2:23225605-23225624 MS.gene39543:intron 55.0%
! GTTGTAGACCGGTTCCAGTG+AGG + chr4.2:23224679-23224698 None:intergenic 55.0%
! TCCCGGTTCTAACCGATGAG+TGG - chr4.2:23225603-23225622 MS.gene39543:intron 55.0%
!! ATCCATCTTGGCCTTGGTCC+AGG + chr4.2:23224275-23224294 None:intergenic 55.0%
ACTTGACTCCTCCGGTGTCC+CGG - chr4.2:23225586-23225605 MS.gene39543:intron 60.0%
CCTCACACCCTCACTGGAAC+CGG - chr4.2:23224668-23224687 MS.gene39543:CDS 60.0%
CTCCTGGACCAAGGCCAAGA+TGG - chr4.2:23224270-23224289 MS.gene39543:intron 60.0%
GAGCTGAAGCTGGAACGGCT+AGG - chr4.2:23226122-23226141 MS.gene39543:CDS 60.0%
GAGGGTGACACCCCACTCAT+CGG + chr4.2:23225618-23225637 None:intergenic 60.0%
TTGTCAATGGCCGGAGGGAG+AGG + chr4.2:23225031-23225050 None:intergenic 60.0%
! CCCCATGGTGGAGTGAGTTG+AGG + chr4.2:23225637-23225656 None:intergenic 60.0%
GGTTAGAACCGGGACACCGG+AGG + chr4.2:23225597-23225616 None:intergenic 65.0%
! CCGGTTCCAGTGAGGGTGTG+AGG + chr4.2:23224671-23224690 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 23223588 23226157 23223588 ID=MS.gene39543
chr4.2 mRNA 23223588 23226157 23223588 ID=MS.gene39543.t1;Parent=MS.gene39543
chr4.2 exon 23226070 23226157 23226070 ID=MS.gene39543.t1.exon1;Parent=MS.gene39543.t1
chr4.2 CDS 23226070 23226157 23226070 ID=cds.MS.gene39543.t1;Parent=MS.gene39543.t1
chr4.2 exon 23224645 23225496 23224645 ID=MS.gene39543.t1.exon2;Parent=MS.gene39543.t1
chr4.2 CDS 23224645 23225496 23224645 ID=cds.MS.gene39543.t1;Parent=MS.gene39543.t1
chr4.2 exon 23224075 23224274 23224075 ID=MS.gene39543.t1.exon3;Parent=MS.gene39543.t1
chr4.2 CDS 23224075 23224274 23224075 ID=cds.MS.gene39543.t1;Parent=MS.gene39543.t1
chr4.2 exon 23223588 23223623 23223588 ID=MS.gene39543.t1.exon4;Parent=MS.gene39543.t1
chr4.2 CDS 23223588 23223623 23223588 ID=cds.MS.gene39543.t1;Parent=MS.gene39543.t1
Gene Sequence

>MS.gene39543

ATGGCTCCCTCGAAGAAAGTACATTGGTCAGACAGGTTCAAAAAATCGACAAAATCGTCGAAGTCCAACAATCAGAATCTTCTGCATGGTGATCTCCCCTCTTCTCTCTTCAATGGTTTCCAAACAACTCCTTCTAATTTTTATTATTATTATTTAATCAAACTGACATGTATGTTTGTATGAAAGATCAAAATCAATGACTATACAAACTAAAAAAGTCCAATCGAAACAAATTATATATCGATTTGGTTTTTTTCCTTGTTGGGGGTCATATAAACGAATCAAACTAAACAAATCTTTTTTATTGAATGGCAAACCAAACAAATTTGATCTTTACTATTTGATCTTAGCTTTAAAAAGATTTTTTTTTTTTGAAAGATTAGCTTTAAAAAAAAATTAAAAGCCTAAATCTAAACATCAACTATTTGATCTTTTCCAATGGTCTGACCATATTTGCTTGACAATGTAAATTTAGGATTTGAATGCAAGTAAAGTTTCCTAAATTCACACATTCAAGCAAATCTAACCCATAAAAAATTAGTTATAGAAATATCAGAATATTAATACTCCATGGTTCATACAGTGTAATGAATATCTTTCAGTCAAATTTATAATTTCTAAACTTTGCATGTTTGATTGGCTTACGACAAATATTTTTTAGGTGGAGATGATGAAGAAAGAACTCCTGGACCAAGGCCAAGATGGATCCCAAAGCCTGAGCAAATCCGCATTCTCAAAGCCATCTATAACTCAGGGATGACGAATCCACGTAGAGATGAGATTAAGAAGATACGTGGACAATTAGAAGAATTTGGACCGATTGGTGATTCCAGCGTCTTTTATTGGTTTCAAAATCGCAAGTACAGAAGCAAAACCAACAAAGTACCCTATAACAAGAAACAGGAAACACAACAAAACGCAGCTCCAGACAGCTCTCTCCCACAAATCACCACACCACCACTCAACTCATCTTCATCATCTTCCTCTAACAATATTGGAATCTCCAATATTAATGATGGGACGGTGATGGTGCCTAATTCACCTGCAATCTCTCTGAGCCAAAACCAAGGTGGTACTTATCCTCACACCCTCACTGGAACCGGTCTACAACTACCTACACCCTCGTTTTCCTCTTTCCCGGTTGAGAATCATATTAATGAAAGGGTAGTGCTTAATGACATGATAAGGCCAGAGGGGTTTAATTACTTCTCTGATTTTCCAAATATGAGTCAATCCCTACCTCAAGAAAATGTTGATCTGCTTAATTATGATAACATCATGACCTATGGAAATGGAAACTGCTCAATCGATGACGTTTTTTATCAAGAGAATATTCAAGAGGAGTCGATTAATATGATGCATATGCACCAACAAGACCCACAACTTAATTTTGGTGTCACGACAGCTTCAAGTAATGATGATCATTCAACTGATCTTGCTCCTCTCCCTCCGGCCATTGACAATAGTGCACCCCATGATGTTCCATTCCTCTTTACTGACGATCAATTTCAAGGTAATGAATATTAATTTTTACTAAGTGATTAAACTCAAGTGCTAAATAATTCCAATTAAGGATGAATATTTGAAAACAAACTGATTCAAATCCTAGCTAGTTTGAACAATTTTTTTATCAAACTTTACTTATGTGTCAAACTCTAAATAACCTAGCTAGTCACTTCCTGAAAAACGGAAGGTTTAGACAAAATATATATCAATATTTATATGTGTGTGTGCGCACACGCGCGCCCCCCAAAATATAAAGCACCGGGTATGATTATGATTTATATATCTCATGGACATGTGCAATGTGTATAGCTTCATTTAGTTGATGTTTGTGTTTTCGAGTTGCATATGACTCGTAAATTGTTGTGTGTGTTTCTCAGGTTTTGGTGAGGACGATGGTACAGCAAAATGTAGGGTGATTACTATCAACGGTACATTCAAAGTTAATGCAGGGCCTTTTAACGTTCGTAAATTCTTTGGCGATGGAGCAGTTCTACTTGACTCCTCCGGTGTCCCGGTTCTAACCGATGAGTGGGGTGTCACCCTCAACTCACTCCACCATGGGGCTGATTATTTCCTGGTCTGCAATTTTTTCTTATAGCATAAGCTTTGTTCATAAACGTTTTTACTAATATATATAATGAGTGATCAACACTTTCTATCATGCATCACTATTTATCACATTATCACTCTCTCTATAACACACTCTCTTTCAAAGTGTAGAGTGGTATTTGTGTGTCTATAGATTATTTTCCATATATAATTATGGATTTAATGGTATACCTTGTGGGTGTAAATATTTTTTTTTTTTTACAGATAAATAAAACTGTTAGTTCATTAAATTATTTCGAAAATCACGTATAGGAATAACTGTGATGATTTTATAGTGTAAAAGTTTTTGTTTGAAGTTAATCAAAGTTATTTTTTTTGTTGGTAGAATAATCAAAATTAAATTAATATGAATAAGTGAAGCATATACATTTTAATGCTATTAATCATTTTTTGCAATTTTCTTTTTCAGCTGTATTAAGGAGCTGAAGCTGGAACGGCTAGGGATGCGAGATTGA

Protein sequence

>MS.gene39543.t1

MAPSKKVHWSDRFKKSTKSSKSNNQNLLHGGDDEERTPGPRPRWIPKPEQIRILKAIYNSGMTNPRRDEIKKIRGQLEEFGPIGDSSVFYWFQNRKYRSKTNKVPYNKKQETQQNAAPDSSLPQITTPPLNSSSSSSSNNIGISNINDGTVMVPNSPAISLSQNQGGTYPHTLTGTGLQLPTPSFSSFPVENHINERVVLNDMIRPEGFNYFSDFPNMSQSLPQENVDLLNYDNIMTYGNGNCSIDDVFYQENIQEESINMMHMHQQDPQLNFGVTTASSNDDHSTDLAPLPPAIDNSAPHDVPFLFTDDQFQGFGEDDGTAKCRVITINGTFKVNAGPFNVRKFFGDGAVLLDSSGVPVLTDEWGVTLNSLHHGADYFLELKLERLGMRD