Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39543.t1 | KEH30946.1 | 71.1 | 387 | 90 | 5 | 1 | 380 | 1 | 372 | 6.20E-135 | 490.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39543.t1 | Q6X7J4 | 34.0 | 382 | 217 | 10 | 9 | 380 | 21 | 377 | 8.4e-24 | 112.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39543.t1 | A0A072UNJ4 | 71.1 | 387 | 90 | 5 | 1 | 380 | 1 | 372 | 4.4e-135 | 490.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene39543.t1 | TF | HB-WOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39543.t1 | MTR_4g088070 | 72.093 | 387 | 86 | 6 | 1 | 380 | 1 | 372 | 4.88e-179 | 504 |
MS.gene39543.t1 | MTR_4g088080 | 84.326 | 319 | 42 | 4 | 1 | 314 | 1 | 316 | 1.26e-177 | 497 |
MS.gene39543.t1 | MTR_7g025010 | 57.729 | 414 | 138 | 9 | 4 | 386 | 3 | 410 | 3.82e-143 | 419 |
MS.gene39543.t1 | MTR_2g015000 | 36.591 | 440 | 184 | 17 | 1 | 380 | 1 | 405 | 3.72e-58 | 196 |
MS.gene39543.t1 | MTR_3g462480 | 69.118 | 68 | 21 | 0 | 313 | 380 | 22 | 89 | 3.07e-26 | 101 |
MS.gene39543.t1 | MTR_4g088065 | 50.505 | 99 | 47 | 2 | 52 | 148 | 134 | 232 | 5.53e-20 | 89.0 |
MS.gene39543.t1 | MTR_6g027390 | 60.000 | 60 | 24 | 0 | 35 | 94 | 24 | 83 | 1.69e-19 | 88.6 |
MS.gene39543.t1 | MTR_7g086940 | 55.714 | 70 | 28 | 1 | 23 | 92 | 11 | 77 | 1.14e-17 | 82.8 |
MS.gene39543.t1 | MTR_4g084550 | 38.750 | 80 | 49 | 0 | 24 | 103 | 45 | 124 | 1.62e-14 | 71.6 |
MS.gene39543.t1 | MTR_5g081990 | 33.813 | 139 | 71 | 4 | 18 | 138 | 11 | 146 | 2.61e-13 | 68.2 |
MS.gene39543.t1 | MTR_8g107210 | 40.000 | 80 | 44 | 1 | 43 | 122 | 96 | 171 | 2.43e-12 | 68.2 |
MS.gene39543.t1 | MTR_1g019130 | 31.757 | 148 | 85 | 2 | 2 | 143 | 59 | 196 | 1.23e-11 | 64.3 |
MS.gene39543.t1 | MTR_5g021930 | 31.206 | 141 | 68 | 3 | 43 | 154 | 30 | 170 | 1.31e-11 | 65.5 |
MS.gene39543.t1 | MTR_1g115315 | 43.333 | 60 | 34 | 0 | 41 | 100 | 83 | 142 | 1.63e-11 | 64.7 |
MS.gene39543.t1 | MTR_1g115315 | 43.333 | 60 | 34 | 0 | 41 | 100 | 83 | 142 | 1.68e-11 | 64.7 |
MS.gene39543.t1 | MTR_0777s0020 | 56.364 | 55 | 23 | 1 | 76 | 129 | 50 | 104 | 7.62e-11 | 60.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39543.t1 | AT2G33880 | 55.435 | 92 | 41 | 0 | 9 | 100 | 21 | 112 | 1.18e-28 | 115 |
MS.gene39543.t1 | AT2G33880 | 55.435 | 92 | 41 | 0 | 9 | 100 | 21 | 112 | 1.22e-28 | 115 |
MS.gene39543.t1 | AT5G45980 | 65.152 | 66 | 23 | 0 | 35 | 100 | 47 | 112 | 2.73e-24 | 102 |
MS.gene39543.t1 | AT5G17810 | 62.963 | 54 | 20 | 0 | 41 | 94 | 19 | 72 | 4.54e-18 | 84.0 |
MS.gene39543.t1 | AT5G17810 | 62.963 | 54 | 20 | 0 | 41 | 94 | 19 | 72 | 4.57e-18 | 84.0 |
MS.gene39543.t1 | AT5G17810 | 62.963 | 54 | 20 | 0 | 41 | 94 | 19 | 72 | 4.57e-18 | 84.0 |
MS.gene39543.t1 | AT3G03660 | 61.111 | 54 | 21 | 0 | 41 | 94 | 31 | 84 | 1.08e-17 | 82.8 |
MS.gene39543.t1 | AT3G03660 | 61.111 | 54 | 21 | 0 | 41 | 94 | 31 | 84 | 1.71e-17 | 82.8 |
MS.gene39543.t1 | AT3G03660 | 61.111 | 54 | 21 | 0 | 41 | 94 | 31 | 84 | 2.46e-17 | 82.4 |
MS.gene39543.t1 | AT3G03660 | 61.111 | 54 | 21 | 0 | 41 | 94 | 31 | 84 | 3.58e-17 | 82.0 |
MS.gene39543.t1 | AT2G17950 | 41.975 | 81 | 45 | 2 | 43 | 122 | 38 | 117 | 1.14e-12 | 68.6 |
MS.gene39543.t1 | AT5G05770 | 37.333 | 75 | 42 | 1 | 43 | 112 | 29 | 103 | 9.87e-12 | 62.4 |
MS.gene39543.t1 | AT3G18010 | 42.623 | 61 | 35 | 0 | 43 | 103 | 76 | 136 | 1.16e-11 | 65.9 |
MS.gene39543.t1 | AT1G20700 | 45.000 | 60 | 33 | 0 | 41 | 100 | 31 | 90 | 1.18e-11 | 62.8 |
MS.gene39543.t1 | AT1G20700 | 42.857 | 63 | 36 | 0 | 41 | 103 | 93 | 155 | 2.07e-11 | 63.5 |
MS.gene39543.t1 | AT1G20700 | 42.857 | 63 | 36 | 0 | 41 | 103 | 93 | 155 | 2.18e-11 | 63.2 |
MS.gene39543.t1 | AT4G35550 | 41.270 | 63 | 37 | 0 | 41 | 103 | 97 | 159 | 8.52e-11 | 62.4 |
Find 117 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAGACCCACAACTTAATTT+TGG | 0.181827 | 4.2:-23224764 | MS.gene39543:CDS |
TGTTTCCTGTTTCTTGTTAT+AGG | 0.203606 | 4.2:+23225249 | None:intergenic |
CGTGGACAATTAGAAGAATT+TGG | 0.217411 | 4.2:-23225343 | MS.gene39543:CDS |
GGTAGGGATTGACTCATATT+TGG | 0.224718 | 4.2:+23224917 | None:intergenic |
AAGAATTTACGAACGTTAAA+AGG | 0.235477 | 4.2:+23224178 | None:intergenic |
TCATCTTCCTCTAACAATAT+TGG | 0.243443 | 4.2:-23225160 | MS.gene39543:CDS |
GTTTCCTGTTTCTTGTTATA+GGG | 0.246182 | 4.2:+23225250 | None:intergenic |
CCATGGGGCTGATTATTTCC+TGG | 0.287811 | 4.2:-23224074 | MS.gene39543:intron |
GATAAGTACCACCTTGGTTT+TGG | 0.292529 | 4.2:+23225077 | None:intergenic |
TTTAACGTTCGTAAATTCTT+TGG | 0.298436 | 4.2:-23224175 | MS.gene39543:CDS |
AGAGAGATTGCAGGTGAATT+AGG | 0.299501 | 4.2:+23225103 | None:intergenic |
CACCGTCCCATCATTAATAT+TGG | 0.306396 | 4.2:+23225132 | None:intergenic |
TGCGGATTTGCTCAGGCTTT+GGG | 0.317008 | 4.2:+23225428 | None:intergenic |
ATGCGGATTTGCTCAGGCTT+TGG | 0.318582 | 4.2:+23225427 | None:intergenic |
TCAGGCTTTGGGATCCATCT+TGG | 0.322557 | 4.2:+23225439 | None:intergenic |
TTTGGGATCCATCTTGGCCT+TGG | 0.327019 | 4.2:+23225445 | None:intergenic |
CTCAAAGCCATCTATAACTC+AGG | 0.355199 | 4.2:-23225403 | MS.gene39543:CDS |
GGAGATTCCAATATTGTTAG+AGG | 0.358018 | 4.2:+23225153 | None:intergenic |
CTTGTTATAGGGTACTTTGT+TGG | 0.367143 | 4.2:+23225261 | None:intergenic |
CGTCATCCCTGAGTTATAGA+TGG | 0.384216 | 4.2:+23225396 | None:intergenic |
TCATTAATATGATTCTCAAC+CGG | 0.390844 | 4.2:+23224998 | None:intergenic |
AGTGGTGGTGTGGTGATTTG+TGG | 0.396224 | 4.2:+23225196 | None:intergenic |
TTTACTGACGATCAATTTCA+AGG | 0.398214 | 4.2:-23224644 | MS.gene39543:intron |
CCCCACTCATCGGTTAGAAC+CGG | 0.406777 | 4.2:+23224118 | None:intergenic |
AACATCATGACCTATGGAAA+TGG | 0.408768 | 4.2:-23224863 | MS.gene39543:CDS |
CCCTCAACTCACTCCACCAT+GGG | 0.416100 | 4.2:-23224090 | MS.gene39543:CDS |
ATGCAGAAGATTCTGATTGT+TGG | 0.417189 | 4.2:+23226071 | None:intergenic |
ATCCATCTTGGCCTTGGTCC+AGG | 0.421536 | 4.2:+23225451 | None:intergenic |
CATTAATATGATTCTCAACC+GGG | 0.432827 | 4.2:+23224999 | None:intergenic |
GGAATCTCCAATATTAATGA+TGG | 0.434654 | 4.2:-23225139 | MS.gene39543:CDS |
AATTAAGTTGTGGGTCTTGT+TGG | 0.440039 | 4.2:+23224768 | None:intergenic |
TTGAGAATGCGGATTTGCTC+AGG | 0.441470 | 4.2:+23225421 | None:intergenic |
GTGGTGGTGTGGTGATTTGT+GGG | 0.445822 | 4.2:+23225197 | None:intergenic |
CCTCACACCCTCACTGGAAC+CGG | 0.457199 | 4.2:-23225055 | MS.gene39543:CDS |
CTGTATTAAGGAGCTGAAGC+TGG | 0.458747 | 4.2:-23223611 | MS.gene39543:intron |
GATGATGAAGAAAGAACTCC+TGG | 0.460723 | 4.2:-23225469 | MS.gene39543:CDS |
ACTTGACTCCTCCGGTGTCC+CGG | 0.468788 | 4.2:-23224137 | MS.gene39543:CDS |
AGTACCCTATAACAAGAAAC+AGG | 0.472976 | 4.2:-23225254 | MS.gene39543:CDS |
TATGATAACATCATGACCTA+TGG | 0.476880 | 4.2:-23224869 | MS.gene39543:CDS |
CCCGGTTCTAACCGATGAGT+GGG | 0.480119 | 4.2:-23224119 | MS.gene39543:CDS |
TTAGAAGAATTTGGACCGAT+TGG | 0.480912 | 4.2:-23225334 | MS.gene39543:CDS |
TTGTCAATGGCCGGAGGGAG+AGG | 0.492827 | 4.2:+23224695 | None:intergenic |
GAAATTGATCGTCAGTAAAG+AGG | 0.493564 | 4.2:+23224648 | None:intergenic |
ATGATTCTCAACCGGGAAAG+AGG | 0.494066 | 4.2:+23225006 | None:intergenic |
ATTTGTGGGAGAGAGCTGTC+TGG | 0.494275 | 4.2:+23225211 | None:intergenic |
ACTTATCCTCACACCCTCAC+TGG | 0.497083 | 4.2:-23225061 | MS.gene39543:CDS |
CTCCTGGACCAAGGCCAAGA+TGG | 0.498721 | 4.2:-23225453 | MS.gene39543:CDS |
GTTCGTAAATTCTTTGGCGA+TGG | 0.502140 | 4.2:-23224169 | MS.gene39543:CDS |
TAGTGCTTAATGACATGATA+AGG | 0.507658 | 4.2:-23224970 | MS.gene39543:CDS |
TGAGAATCATATTAATGAAA+GGG | 0.508209 | 4.2:-23224993 | MS.gene39543:CDS |
CCCCATGGTGGAGTGAGTTG+AGG | 0.511520 | 4.2:+23224089 | None:intergenic |
AGCTGAAGCTGGAACGGCTA+GGG | 0.512827 | 4.2:-23223600 | MS.gene39543:CDS |
ACGATGGTACAGCAAAATGT+AGG | 0.522895 | 4.2:-23224240 | MS.gene39543:CDS |
TAAAGAGGAATGGAACATCA+TGG | 0.526169 | 4.2:+23224663 | None:intergenic |
GGTACATTCAAAGTTAATGC+AGG | 0.526348 | 4.2:-23224202 | MS.gene39543:CDS |
TTGAGAATCATATTAATGAA+AGG | 0.528238 | 4.2:-23224994 | MS.gene39543:CDS |
TGACCAATGTACTTTCTTCG+AGG | 0.532182 | 4.2:+23226128 | None:intergenic |
CCCATGGTGGAGTGAGTTGA+GGG | 0.532190 | 4.2:+23224090 | None:intergenic |
TGAGCAGTTTCCATTTCCAT+AGG | 0.532338 | 4.2:+23224853 | None:intergenic |
GAGAAGTAATTAAACCCCTC+TGG | 0.532494 | 4.2:+23224947 | None:intergenic |
TGACACCAAAATTAAGTTGT+GGG | 0.534770 | 4.2:+23224759 | None:intergenic |
AGAAAGTACATTGGTCAGAC+AGG | 0.539026 | 4.2:-23226122 | MS.gene39543:CDS |
AAAGAGGAATGGAACATCAT+GGG | 0.539927 | 4.2:+23224664 | None:intergenic |
ATGGGGTGCACTATTGTCAA+TGG | 0.543487 | 4.2:+23224682 | None:intergenic |
TTGTAGACCGGTTCCAGTGA+GGG | 0.546990 | 4.2:+23225048 | None:intergenic |
TGATCGTCAGTAAAGAGGAA+TGG | 0.555879 | 4.2:+23224653 | None:intergenic |
TCCCGGTTCTAACCGATGAG+TGG | 0.562878 | 4.2:-23224120 | MS.gene39543:CDS |
CTCCAATATTAATGATGGGA+CGG | 0.566336 | 4.2:-23225134 | MS.gene39543:CDS |
TTAAGGAGCTGAAGCTGGAA+CGG | 0.567945 | 4.2:-23223606 | MS.gene39543:intron |
CCCACTCATCGGTTAGAACC+GGG | 0.569151 | 4.2:+23224119 | None:intergenic |
TATAGATGGCTTTGAGAATG+CGG | 0.572647 | 4.2:+23225410 | None:intergenic |
ATCGGTTAGAACCGGGACAC+CGG | 0.573165 | 4.2:+23224126 | None:intergenic |
ACCCTCAACTCACTCCACCA+TGG | 0.573606 | 4.2:-23224091 | MS.gene39543:CDS |
GAATCTCCAATATTAATGAT+GGG | 0.575519 | 4.2:-23225138 | MS.gene39543:CDS |
CGATGGTACAGCAAAATGTA+GGG | 0.576909 | 4.2:-23224239 | MS.gene39543:CDS |
GCAGTTCTACTTGACTCCTC+CGG | 0.578536 | 4.2:-23224145 | MS.gene39543:CDS |
TTGAAACCAATAAAAGACGC+TGG | 0.582551 | 4.2:+23225306 | None:intergenic |
TGATCTTGCTCCTCTCCCTC+CGG | 0.584114 | 4.2:-23224705 | MS.gene39543:CDS |
CCGGTTCCAGTGAGGGTGTG+AGG | 0.585988 | 4.2:+23225055 | None:intergenic |
CACTATTGTCAATGGCCGGA+GGG | 0.589288 | 4.2:+23224690 | None:intergenic |
GAGCTGAAGCTGGAACGGCT+AGG | 0.596169 | 4.2:-23223601 | MS.gene39543:CDS |
GAGGGTGACACCCCACTCAT+CGG | 0.597239 | 4.2:+23224108 | None:intergenic |
GACCAATGTACTTTCTTCGA+GGG | 0.597684 | 4.2:+23226129 | None:intergenic |
AAGACGCTGGAATCACCAAT+CGG | 0.600408 | 4.2:+23225319 | None:intergenic |
TTATCAAGAGAATATTCAAG+AGG | 0.601533 | 4.2:-23224816 | MS.gene39543:CDS |
GGGTGTAGGTAGTTGTAGAC+CGG | 0.604786 | 4.2:+23225036 | None:intergenic |
AACAATCAGAATCTTCTGCA+TGG | 0.607678 | 4.2:-23226069 | MS.gene39543:intron |
TCAAAGCCATCTATAACTCA+GGG | 0.608140 | 4.2:-23225402 | MS.gene39543:CDS |
GGTGCACTATTGTCAATGGC+CGG | 0.610163 | 4.2:+23224686 | None:intergenic |
GTGACACCAAAATTAAGTTG+TGG | 0.611199 | 4.2:+23224758 | None:intergenic |
AAAGAGGAAAACGAGGGTGT+AGG | 0.613264 | 4.2:+23225022 | None:intergenic |
TGTAGGGTGATTACTATCAA+CGG | 0.630138 | 4.2:-23224223 | MS.gene39543:CDS |
TGTGAGGATAAGTACCACCT+TGG | 0.631687 | 4.2:+23225071 | None:intergenic |
GCACTATTGTCAATGGCCGG+AGG | 0.634089 | 4.2:+23224689 | None:intergenic |
GGAAATAATCAGCCCCATGG+TGG | 0.634153 | 4.2:+23224077 | None:intergenic |
GTACATTCAAAGTTAATGCA+GGG | 0.634787 | 4.2:-23224201 | MS.gene39543:CDS |
GTTGTAGACCGGTTCCAGTG+AGG | 0.637143 | 4.2:+23225047 | None:intergenic |
ATCTCTCTGAGCCAAAACCA+AGG | 0.639915 | 4.2:-23225088 | MS.gene39543:CDS |
TATTAATGATGGGACGGTGA+TGG | 0.642433 | 4.2:-23225128 | MS.gene39543:CDS |
AAGAAAGAACTCCTGGACCA+AGG | 0.644218 | 4.2:-23225462 | MS.gene39543:CDS |
AAGAGGAATGGAACATCATG+GGG | 0.652109 | 4.2:+23224665 | None:intergenic |
CTCCCTCGAAGAAAGTACAT+TGG | 0.654219 | 4.2:-23226131 | MS.gene39543:CDS |
AGATGAGTTGAGTGGTGGTG+TGG | 0.655150 | 4.2:+23225186 | None:intergenic |
CCAGGAAATAATCAGCCCCA+TGG | 0.655999 | 4.2:+23224074 | None:intergenic |
TAATGACATGATAAGGCCAG+AGG | 0.662717 | 4.2:-23224963 | MS.gene39543:CDS |
GGTTAGAACCGGGACACCGG+AGG | 0.663701 | 4.2:+23224129 | None:intergenic |
TTCTTAATCTCATCTCTACG+TGG | 0.679677 | 4.2:+23225370 | None:intergenic |
AATGACATGATAAGGCCAGA+GGG | 0.681201 | 4.2:-23224962 | MS.gene39543:CDS |
ACCGGGAAAGAGGAAAACGA+GGG | 0.684423 | 4.2:+23225016 | None:intergenic |
CCGGTTCTAACCGATGAGTG+GGG | 0.684812 | 4.2:-23224118 | MS.gene39543:CDS |
AACCGGGAAAGAGGAAAACG+AGG | 0.685255 | 4.2:+23225015 | None:intergenic |
ATGACATGATAAGGCCAGAG+GGG | 0.698753 | 4.2:-23224961 | MS.gene39543:CDS |
GATGATGAAGATGAGTTGAG+TGG | 0.699555 | 4.2:+23225178 | None:intergenic |
CCTCAACTCACTCCACCATG+GGG | 0.702965 | 4.2:-23224089 | MS.gene39543:CDS |
GATGAGATTAAGAAGATACG+TGG | 0.711435 | 4.2:-23225361 | MS.gene39543:CDS |
GATGAAGATGAGTTGAGTGG+TGG | 0.726884 | 4.2:+23225181 | None:intergenic |
TCTCTGAGCCAAAACCAAGG+TGG | 0.727096 | 4.2:-23225085 | MS.gene39543:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATAATTATGGATTTAA+TGG | - | chr4.2:23225846-23225865 | MS.gene39543:intron | 10.0% |
!! | ATTAAATCCATAATTATATA+TGG | + | chr4.2:23225847-23225866 | None:intergenic | 10.0% |
!!! | TTATTTTCCATATATAATTA+TGG | - | chr4.2:23225837-23225856 | MS.gene39543:intron | 10.0% |
!!! | TTCTATAACTAATTTTTTAT+GGG | + | chr4.2:23224117-23224136 | None:intergenic | 10.0% |
!!! | TTTCTATAACTAATTTTTTA+TGG | + | chr4.2:23224118-23224137 | None:intergenic | 10.0% |
!! | ATTATGATTTATATATCTCA+TGG | - | chr4.2:23225361-23225380 | MS.gene39543:CDS | 15.0% |
!!! | AAACAAATTATATATCGATT+TGG | - | chr4.2:23223814-23223833 | MS.gene39543:intron | 15.0% |
!!! | AACAAATCTTTTTTATTGAA+TGG | - | chr4.2:23223877-23223896 | MS.gene39543:intron | 15.0% |
!!! | ATCAAAGTTATTTTTTTTGT+TGG | - | chr4.2:23226002-23226021 | MS.gene39543:intron | 15.0% |
!! | ATATAAATCATAATCATACC+CGG | + | chr4.2:23225355-23225374 | None:intergenic | 20.0% |
!! | TGAGAATCATATTAATGAAA+GGG | - | chr4.2:23224730-23224749 | MS.gene39543:CDS | 20.0% |
!! | TTCAAATATTCATCCTTAAT+TGG | + | chr4.2:23225155-23225174 | None:intergenic | 20.0% |
!! | TTGAGAATCATATTAATGAA+AGG | - | chr4.2:23224729-23224748 | MS.gene39543:CDS | 20.0% |
!!! | AATAGTTGATGTTTAGATTT+AGG | + | chr4.2:23223994-23224013 | None:intergenic | 20.0% |
!!! | GATATATAATTTGTTTCGAT+TGG | + | chr4.2:23223810-23223829 | None:intergenic | 20.0% |
!!! | TAGTAAAGATCAAATTTGTT+TGG | + | chr4.2:23223907-23223926 | None:intergenic | 20.0% |
! | AAAAAATATTTACACCCACA+AGG | + | chr4.2:23225876-23225895 | None:intergenic | 25.0% |
! | AAAAATTAGAAGGAGTTGTT+TGG | + | chr4.2:23223710-23223729 | None:intergenic | 25.0% |
! | AAAAATTGTTCAAACTAGCT+AGG | + | chr4.2:23225195-23225214 | None:intergenic | 25.0% |
! | AAGAATTTACGAACGTTAAA+AGG | + | chr4.2:23225548-23225567 | None:intergenic | 25.0% |
! | ATCAGAATATTAATACTCCA+TGG | - | chr4.2:23224139-23224158 | MS.gene39543:CDS | 25.0% |
! | GAATCTCCAATATTAATGAT+GGG | - | chr4.2:23224585-23224604 | MS.gene39543:intron | 25.0% |
! | GTGCTAAATAATTCCAATTA+AGG | - | chr4.2:23225139-23225158 | MS.gene39543:CDS | 25.0% |
! | TCATTAATATGATTCTCAAC+CGG | + | chr4.2:23224728-23224747 | None:intergenic | 25.0% |
! | TTATCAAGAGAATATTCAAG+AGG | - | chr4.2:23224907-23224926 | MS.gene39543:CDS | 25.0% |
! | TTATTTCGAAAATCACGTAT+AGG | - | chr4.2:23225933-23225952 | MS.gene39543:intron | 25.0% |
! | TTGCTTGACAATGTAAATTT+AGG | - | chr4.2:23224041-23224060 | MS.gene39543:intron | 25.0% |
! | TTTAACGTTCGTAAATTCTT+TGG | - | chr4.2:23225548-23225567 | MS.gene39543:intron | 25.0% |
! | TTTACATTGTCAAGCAAATA+TGG | + | chr4.2:23224038-23224057 | None:intergenic | 25.0% |
!! | AACTATTTGATCTTTTCCAA+TGG | - | chr4.2:23224007-23224026 | MS.gene39543:intron | 25.0% |
!!! | ATTTGGTTTTTTTCCTTGTT+GGG | - | chr4.2:23223831-23223850 | MS.gene39543:intron | 25.0% |
!!! | GCTTACGACAAATATTTTTT+AGG | - | chr4.2:23224227-23224246 | MS.gene39543:CDS | 25.0% |
!!! | TACGACAAATATTTTTTAGG+TGG | - | chr4.2:23224230-23224249 | MS.gene39543:CDS | 25.0% |
!!! | TTTCTTTTTCAGCTGTATTA+AGG | - | chr4.2:23226100-23226119 | MS.gene39543:CDS | 25.0% |
ATAAGAAAAAATTGCAGACC+AGG | + | chr4.2:23225670-23225689 | None:intergenic | 30.0% | |
CATTAATATGATTCTCAACC+GGG | + | chr4.2:23224727-23224746 | None:intergenic | 30.0% | |
CTAAACTTTGCATGTTTGAT+TGG | - | chr4.2:23224205-23224224 | MS.gene39543:CDS | 30.0% | |
GATTTAATGGTATACCTTGT+GGG | - | chr4.2:23225859-23225878 | MS.gene39543:intron | 30.0% | |
GGAATCTCCAATATTAATGA+TGG | - | chr4.2:23224584-23224603 | MS.gene39543:intron | 30.0% | |
GTACATTCAAAGTTAATGCA+GGG | - | chr4.2:23225522-23225541 | MS.gene39543:intron | 30.0% | |
TAGTGCTTAATGACATGATA+AGG | - | chr4.2:23224753-23224772 | MS.gene39543:CDS | 30.0% | |
TATGATAACATCATGACCTA+TGG | - | chr4.2:23224854-23224873 | MS.gene39543:CDS | 30.0% | |
TCATCTTCCTCTAACAATAT+TGG | - | chr4.2:23224563-23224582 | MS.gene39543:intron | 30.0% | |
TTGCTTGAATGTGTGAATTT+AGG | + | chr4.2:23224088-23224107 | None:intergenic | 30.0% | |
TTTACTGACGATCAATTTCA+AGG | - | chr4.2:23225079-23225098 | MS.gene39543:CDS | 30.0% | |
! | ATCAACATTTTCTTGAGGTA+GGG | + | chr4.2:23224825-23224844 | None:intergenic | 30.0% |
! | GTTTCCTGTTTCTTGTTATA+GGG | + | chr4.2:23224476-23224495 | None:intergenic | 30.0% |
! | TGACACCAAAATTAAGTTGT+GGG | + | chr4.2:23224967-23224986 | None:intergenic | 30.0% |
! | TGTTTCCTGTTTCTTGTTAT+AGG | + | chr4.2:23224477-23224496 | None:intergenic | 30.0% |
!!! | GATTTGGTTTTTTTCCTTGT+TGG | - | chr4.2:23223830-23223849 | MS.gene39543:intron | 30.0% |
!!! | TTTGGTTTTTTTCCTTGTTG+GGG | - | chr4.2:23223832-23223851 | MS.gene39543:intron | 30.0% |
AAACCATTGAAGAGAGAAGA+GGG | + | chr4.2:23223687-23223706 | None:intergenic | 35.0% | |
AAAGAGGAATGGAACATCAT+GGG | + | chr4.2:23225062-23225081 | None:intergenic | 35.0% | |
AACAATCAGAATCTTCTGCA+TGG | - | chr4.2:23223654-23223673 | MS.gene39543:intron | 35.0% | |
AACATCATGACCTATGGAAA+TGG | - | chr4.2:23224860-23224879 | MS.gene39543:CDS | 35.0% | |
AATTGTTGTGTGTGTTTCTC+AGG | - | chr4.2:23225449-23225468 | MS.gene39543:CDS | 35.0% | |
AGTACCCTATAACAAGAAAC+AGG | - | chr4.2:23224469-23224488 | MS.gene39543:intron | 35.0% | |
ATGCAGAAGATTCTGATTGT+TGG | + | chr4.2:23223655-23223674 | None:intergenic | 35.0% | |
CGTGGACAATTAGAAGAATT+TGG | - | chr4.2:23224380-23224399 | MS.gene39543:intron | 35.0% | |
GAAATTGATCGTCAGTAAAG+AGG | + | chr4.2:23225078-23225097 | None:intergenic | 35.0% | |
GATGAGATTAAGAAGATACG+TGG | - | chr4.2:23224362-23224381 | MS.gene39543:intron | 35.0% | |
GGAGATTCCAATATTGTTAG+AGG | + | chr4.2:23224573-23224592 | None:intergenic | 35.0% | |
GGATTTAATGGTATACCTTG+TGG | - | chr4.2:23225858-23225877 | MS.gene39543:intron | 35.0% | |
GGTACATTCAAAGTTAATGC+AGG | - | chr4.2:23225521-23225540 | MS.gene39543:intron | 35.0% | |
TAAAGAGGAATGGAACATCA+TGG | + | chr4.2:23225063-23225082 | None:intergenic | 35.0% | |
TCAAAGCCATCTATAACTCA+GGG | - | chr4.2:23224321-23224340 | MS.gene39543:intron | 35.0% | |
TCATTACACTGTATGAACCA+TGG | + | chr4.2:23224159-23224178 | None:intergenic | 35.0% | |
TGTAGGGTGATTACTATCAA+CGG | - | chr4.2:23225500-23225519 | MS.gene39543:intron | 35.0% | |
TTAGAAGAATTTGGACCGAT+TGG | - | chr4.2:23224389-23224408 | MS.gene39543:intron | 35.0% | |
TTCTTAATCTCATCTCTACG+TGG | + | chr4.2:23224356-23224375 | None:intergenic | 35.0% | |
TTGAAACCAATAAAAGACGC+TGG | + | chr4.2:23224420-23224439 | None:intergenic | 35.0% | |
! | AATTAAGTTGTGGGTCTTGT+TGG | + | chr4.2:23224958-23224977 | None:intergenic | 35.0% |
! | AGCAGATCAACATTTTCTTG+AGG | + | chr4.2:23224830-23224849 | None:intergenic | 35.0% |
! | ATACCCGGTGCTTTATATTT+TGG | + | chr4.2:23225340-23225359 | None:intergenic | 35.0% |
! | CAAGACCCACAACTTAATTT+TGG | - | chr4.2:23224959-23224978 | MS.gene39543:CDS | 35.0% |
! | CTCCAATATTAATGATGGGA+CGG | - | chr4.2:23224589-23224608 | MS.gene39543:intron | 35.0% |
! | CTTGTTATAGGGTACTTTGT+TGG | + | chr4.2:23224465-23224484 | None:intergenic | 35.0% |
! | GATCAACATTTTCTTGAGGT+AGG | + | chr4.2:23224826-23224845 | None:intergenic | 35.0% |
! | GTGACACCAAAATTAAGTTG+TGG | + | chr4.2:23224968-23224987 | None:intergenic | 35.0% |
! | TACCCGGTGCTTTATATTTT+GGG | + | chr4.2:23225339-23225358 | None:intergenic | 35.0% |
!! | TATAGATGGCTTTGAGAATG+CGG | + | chr4.2:23224316-23224335 | None:intergenic | 35.0% |
!!! | TTGGTTTTTTTCCTTGTTGG+GGG | - | chr4.2:23223833-23223852 | MS.gene39543:intron | 35.0% |
AACCATTGAAGAGAGAAGAG+GGG | + | chr4.2:23223686-23223705 | None:intergenic | 40.0% | |
AAGAGGAATGGAACATCATG+GGG | + | chr4.2:23225061-23225080 | None:intergenic | 40.0% | |
AATGACATGATAAGGCCAGA+GGG | - | chr4.2:23224761-23224780 | MS.gene39543:CDS | 40.0% | |
ACGATGGTACAGCAAAATGT+AGG | - | chr4.2:23225483-23225502 | MS.gene39543:intron | 40.0% | |
AGAGAGATTGCAGGTGAATT+AGG | + | chr4.2:23224623-23224642 | None:intergenic | 40.0% | |
AGCAAATATGGTCAGACCAT+TGG | + | chr4.2:23224026-23224045 | None:intergenic | 40.0% | |
CACCGTCCCATCATTAATAT+TGG | + | chr4.2:23224594-23224613 | None:intergenic | 40.0% | |
CGATGGTACAGCAAAATGTA+GGG | - | chr4.2:23225484-23225503 | MS.gene39543:intron | 40.0% | |
CTCAAAGCCATCTATAACTC+AGG | - | chr4.2:23224320-23224339 | MS.gene39543:intron | 40.0% | |
CTCTCTTTCAAAGTGTAGAG+TGG | - | chr4.2:23225796-23225815 | MS.gene39543:intron | 40.0% | |
GAAACCATTGAAGAGAGAAG+AGG | + | chr4.2:23223688-23223707 | None:intergenic | 40.0% | |
GACCAATGTACTTTCTTCGA+GGG | + | chr4.2:23223597-23223616 | None:intergenic | 40.0% | |
GAGAAGTAATTAAACCCCTC+TGG | + | chr4.2:23224779-23224798 | None:intergenic | 40.0% | |
GATGATGAAGAAAGAACTCC+TGG | - | chr4.2:23224254-23224273 | MS.gene39543:CDS | 40.0% | |
GCTAGTCACTTCCTGAAAAA+CGG | - | chr4.2:23225255-23225274 | MS.gene39543:CDS | 40.0% | |
GTTCGTAAATTCTTTGGCGA+TGG | - | chr4.2:23225554-23225573 | MS.gene39543:intron | 40.0% | |
TAATGACATGATAAGGCCAG+AGG | - | chr4.2:23224760-23224779 | MS.gene39543:CDS | 40.0% | |
TGACCAATGTACTTTCTTCG+AGG | + | chr4.2:23223598-23223617 | None:intergenic | 40.0% | |
TGAGCAGTTTCCATTTCCAT+AGG | + | chr4.2:23224873-23224892 | None:intergenic | 40.0% | |
TGATCGTCAGTAAAGAGGAA+TGG | + | chr4.2:23225073-23225092 | None:intergenic | 40.0% | |
! | ACCCGGTGCTTTATATTTTG+GGG | + | chr4.2:23225338-23225357 | None:intergenic | 40.0% |
! | AGAAAGTACATTGGTCAGAC+AGG | - | chr4.2:23223601-23223620 | MS.gene39543:CDS | 40.0% |
! | GATAAGTACCACCTTGGTTT+TGG | + | chr4.2:23224649-23224668 | None:intergenic | 40.0% |
! | GATGATGAAGATGAGTTGAG+TGG | + | chr4.2:23224548-23224567 | None:intergenic | 40.0% |
! | GGTAGGGATTGACTCATATT+TGG | + | chr4.2:23224809-23224828 | None:intergenic | 40.0% |
! | GTGATTCCAGCGTCTTTTAT+TGG | - | chr4.2:23224411-23224430 | MS.gene39543:intron | 40.0% |
! | TATTAATGATGGGACGGTGA+TGG | - | chr4.2:23224595-23224614 | MS.gene39543:intron | 40.0% |
! | TGTGTGTGTTTCTCAGGTTT+TGG | - | chr4.2:23225455-23225474 | MS.gene39543:CDS | 40.0% |
!! | GTCTAAACCTTCCGTTTTTC+AGG | + | chr4.2:23225269-23225288 | None:intergenic | 40.0% |
!! | TTTTCAGGAAGTGACTAGCT+AGG | + | chr4.2:23225254-23225273 | None:intergenic | 40.0% |
AAGAAAGAACTCCTGGACCA+AGG | - | chr4.2:23224261-23224280 | MS.gene39543:intron | 45.0% | |
AAGACGCTGGAATCACCAAT+CGG | + | chr4.2:23224407-23224426 | None:intergenic | 45.0% | |
ATCTCTCTGAGCCAAAACCA+AGG | - | chr4.2:23224635-23224654 | MS.gene39543:intron | 45.0% | |
ATGACATGATAAGGCCAGAG+GGG | - | chr4.2:23224762-23224781 | MS.gene39543:CDS | 45.0% | |
ATGATTCTCAACCGGGAAAG+AGG | + | chr4.2:23224720-23224739 | None:intergenic | 45.0% | |
ATGGGGTGCACTATTGTCAA+TGG | + | chr4.2:23225044-23225063 | None:intergenic | 45.0% | |
CCCCCCAAAATATAAAGCAC+CGG | - | chr4.2:23225333-23225352 | MS.gene39543:CDS | 45.0% | |
CGTCATCCCTGAGTTATAGA+TGG | + | chr4.2:23224330-23224349 | None:intergenic | 45.0% | |
CGTTTATATGACCCCCAACA+AGG | + | chr4.2:23223847-23223866 | None:intergenic | 45.0% | |
CTGTATTAAGGAGCTGAAGC+TGG | - | chr4.2:23226112-23226131 | MS.gene39543:CDS | 45.0% | |
GTCACTTCCTGAAAAACGGA+AGG | - | chr4.2:23225259-23225278 | MS.gene39543:CDS | 45.0% | |
TGTGAGGATAAGTACCACCT+TGG | + | chr4.2:23224655-23224674 | None:intergenic | 45.0% | |
TTAAGGAGCTGAAGCTGGAA+CGG | - | chr4.2:23226117-23226136 | MS.gene39543:CDS | 45.0% | |
! | AAAGAGGAAAACGAGGGTGT+AGG | + | chr4.2:23224704-23224723 | None:intergenic | 45.0% |
! | CCCCCAAAATATAAAGCACC+GGG | - | chr4.2:23225334-23225353 | MS.gene39543:CDS | 45.0% |
! | CTCCCTCGAAGAAAGTACAT+TGG | - | chr4.2:23223592-23223611 | MS.gene39543:CDS | 45.0% |
! | GATGAAGATGAGTTGAGTGG+TGG | + | chr4.2:23224545-23224564 | None:intergenic | 45.0% |
! | TTGAGAATGCGGATTTGCTC+AGG | + | chr4.2:23224305-23224324 | None:intergenic | 45.0% |
!! | CCCGGTGCTTTATATTTTGG+GGG | + | chr4.2:23225337-23225356 | None:intergenic | 45.0% |
!! | CCGGTGCTTTATATTTTGGG+GGG | + | chr4.2:23225336-23225355 | None:intergenic | 45.0% |
!! | GTGTTTCTCAGGTTTTGGTG+AGG | - | chr4.2:23225460-23225479 | MS.gene39543:CDS | 45.0% |
!!! | TTTTGGCTCAGAGAGATTGC+AGG | + | chr4.2:23224632-23224651 | None:intergenic | 45.0% |
!! | TAATAATAATAAAAATTAGA+AGG | + | chr4.2:23223720-23223739 | None:intergenic | 5.0% |
AACCGGGAAAGAGGAAAACG+AGG | + | chr4.2:23224711-23224730 | None:intergenic | 50.0% | |
ACCGGGAAAGAGGAAAACGA+GGG | + | chr4.2:23224710-23224729 | None:intergenic | 50.0% | |
ACTTATCCTCACACCCTCAC+TGG | - | chr4.2:23224662-23224681 | MS.gene39543:CDS | 50.0% | |
ATTTGTGGGAGAGAGCTGTC+TGG | + | chr4.2:23224515-23224534 | None:intergenic | 50.0% | |
CACTATTGTCAATGGCCGGA+GGG | + | chr4.2:23225036-23225055 | None:intergenic | 50.0% | |
CCAGGAAATAATCAGCCCCA+TGG | + | chr4.2:23225652-23225671 | None:intergenic | 50.0% | |
CCATGGGGCTGATTATTTCC+TGG | - | chr4.2:23225649-23225668 | MS.gene39543:intron | 50.0% | |
CTCCCCTCTTCTCTCTTCAA+TGG | - | chr4.2:23223681-23223700 | MS.gene39543:intron | 50.0% | |
GCAGTTCTACTTGACTCCTC+CGG | - | chr4.2:23225578-23225597 | MS.gene39543:intron | 50.0% | |
GGAAATAATCAGCCCCATGG+TGG | + | chr4.2:23225649-23225668 | None:intergenic | 50.0% | |
GGGTGTAGGTAGTTGTAGAC+CGG | + | chr4.2:23224690-23224709 | None:intergenic | 50.0% | |
GGTGCACTATTGTCAATGGC+CGG | + | chr4.2:23225040-23225059 | None:intergenic | 50.0% | |
TCTCTGAGCCAAAACCAAGG+TGG | - | chr4.2:23224638-23224657 | MS.gene39543:intron | 50.0% | |
! | ACCCTCGTTTTCCTCTTTCC+CGG | - | chr4.2:23224706-23224725 | MS.gene39543:CDS | 50.0% |
! | AGATGAGTTGAGTGGTGGTG+TGG | + | chr4.2:23224540-23224559 | None:intergenic | 50.0% |
! | AGTGGTGGTGTGGTGATTTG+TGG | + | chr4.2:23224530-23224549 | None:intergenic | 50.0% |
! | ATGCGGATTTGCTCAGGCTT+TGG | + | chr4.2:23224299-23224318 | None:intergenic | 50.0% |
! | GTGGTGGTGTGGTGATTTGT+GGG | + | chr4.2:23224529-23224548 | None:intergenic | 50.0% |
! | TGCGGATTTGCTCAGGCTTT+GGG | + | chr4.2:23224298-23224317 | None:intergenic | 50.0% |
! | TTGTAGACCGGTTCCAGTGA+GGG | + | chr4.2:23224678-23224697 | None:intergenic | 50.0% |
! | TTTGGGATCCATCTTGGCCT+TGG | + | chr4.2:23224281-23224300 | None:intergenic | 50.0% |
!! | TCAGGCTTTGGGATCCATCT+TGG | + | chr4.2:23224287-23224306 | None:intergenic | 50.0% |
!! | TCAGGTTTTGGTGAGGACGA+TGG | - | chr4.2:23225467-23225486 | MS.gene39543:CDS | 50.0% |
ACCCTCAACTCACTCCACCA+TGG | - | chr4.2:23225632-23225651 | MS.gene39543:intron | 55.0% | |
AGCTGAAGCTGGAACGGCTA+GGG | - | chr4.2:23226123-23226142 | MS.gene39543:CDS | 55.0% | |
ATCGGTTAGAACCGGGACAC+CGG | + | chr4.2:23225600-23225619 | None:intergenic | 55.0% | |
CCCTCAACTCACTCCACCAT+GGG | - | chr4.2:23225633-23225652 | MS.gene39543:intron | 55.0% | |
CCTCAACTCACTCCACCATG+GGG | - | chr4.2:23225634-23225653 | MS.gene39543:intron | 55.0% | |
GCACTATTGTCAATGGCCGG+AGG | + | chr4.2:23225037-23225056 | None:intergenic | 55.0% | |
TGATCTTGCTCCTCTCCCTC+CGG | - | chr4.2:23225018-23225037 | MS.gene39543:CDS | 55.0% | |
! | CCCACTCATCGGTTAGAACC+GGG | + | chr4.2:23225607-23225626 | None:intergenic | 55.0% |
! | CCCATGGTGGAGTGAGTTGA+GGG | + | chr4.2:23225636-23225655 | None:intergenic | 55.0% |
! | CCCCACTCATCGGTTAGAAC+CGG | + | chr4.2:23225608-23225627 | None:intergenic | 55.0% |
! | CCCGGTTCTAACCGATGAGT+GGG | - | chr4.2:23225604-23225623 | MS.gene39543:intron | 55.0% |
! | CCGGTTCTAACCGATGAGTG+GGG | - | chr4.2:23225605-23225624 | MS.gene39543:intron | 55.0% |
! | GTTGTAGACCGGTTCCAGTG+AGG | + | chr4.2:23224679-23224698 | None:intergenic | 55.0% |
! | TCCCGGTTCTAACCGATGAG+TGG | - | chr4.2:23225603-23225622 | MS.gene39543:intron | 55.0% |
!! | ATCCATCTTGGCCTTGGTCC+AGG | + | chr4.2:23224275-23224294 | None:intergenic | 55.0% |
ACTTGACTCCTCCGGTGTCC+CGG | - | chr4.2:23225586-23225605 | MS.gene39543:intron | 60.0% | |
CCTCACACCCTCACTGGAAC+CGG | - | chr4.2:23224668-23224687 | MS.gene39543:CDS | 60.0% | |
CTCCTGGACCAAGGCCAAGA+TGG | - | chr4.2:23224270-23224289 | MS.gene39543:intron | 60.0% | |
GAGCTGAAGCTGGAACGGCT+AGG | - | chr4.2:23226122-23226141 | MS.gene39543:CDS | 60.0% | |
GAGGGTGACACCCCACTCAT+CGG | + | chr4.2:23225618-23225637 | None:intergenic | 60.0% | |
TTGTCAATGGCCGGAGGGAG+AGG | + | chr4.2:23225031-23225050 | None:intergenic | 60.0% | |
! | CCCCATGGTGGAGTGAGTTG+AGG | + | chr4.2:23225637-23225656 | None:intergenic | 60.0% |
GGTTAGAACCGGGACACCGG+AGG | + | chr4.2:23225597-23225616 | None:intergenic | 65.0% | |
! | CCGGTTCCAGTGAGGGTGTG+AGG | + | chr4.2:23224671-23224690 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.2 | gene | 23223588 | 23226157 | 23223588 | ID=MS.gene39543 |
chr4.2 | mRNA | 23223588 | 23226157 | 23223588 | ID=MS.gene39543.t1;Parent=MS.gene39543 |
chr4.2 | exon | 23226070 | 23226157 | 23226070 | ID=MS.gene39543.t1.exon1;Parent=MS.gene39543.t1 |
chr4.2 | CDS | 23226070 | 23226157 | 23226070 | ID=cds.MS.gene39543.t1;Parent=MS.gene39543.t1 |
chr4.2 | exon | 23224645 | 23225496 | 23224645 | ID=MS.gene39543.t1.exon2;Parent=MS.gene39543.t1 |
chr4.2 | CDS | 23224645 | 23225496 | 23224645 | ID=cds.MS.gene39543.t1;Parent=MS.gene39543.t1 |
chr4.2 | exon | 23224075 | 23224274 | 23224075 | ID=MS.gene39543.t1.exon3;Parent=MS.gene39543.t1 |
chr4.2 | CDS | 23224075 | 23224274 | 23224075 | ID=cds.MS.gene39543.t1;Parent=MS.gene39543.t1 |
chr4.2 | exon | 23223588 | 23223623 | 23223588 | ID=MS.gene39543.t1.exon4;Parent=MS.gene39543.t1 |
chr4.2 | CDS | 23223588 | 23223623 | 23223588 | ID=cds.MS.gene39543.t1;Parent=MS.gene39543.t1 |
Gene Sequence |
Protein sequence |