Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39735.t1 | XP_003613438.2 | 94.8 | 115 | 6 | 0 | 17 | 131 | 74 | 188 | 4.50E-56 | 227.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39735.t1 | O48686 | 70.4 | 115 | 34 | 0 | 17 | 131 | 45 | 159 | 8.6e-40 | 164.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39735.t1 | G7K6W4 | 94.8 | 115 | 6 | 0 | 17 | 131 | 74 | 188 | 3.2e-56 | 227.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene39735.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39735.t1 | MTR_5g036670 | 94.783 | 115 | 6 | 0 | 17 | 131 | 74 | 188 | 4.50e-70 | 228 |
| MS.gene39735.t1 | MTR_8g062700 | 69.565 | 115 | 35 | 0 | 17 | 131 | 73 | 187 | 1.36e-48 | 167 |
| MS.gene39735.t1 | MTR_8g062700 | 69.565 | 115 | 35 | 0 | 17 | 131 | 73 | 187 | 1.39e-48 | 167 |
| MS.gene39735.t1 | MTR_6g008970 | 64.602 | 113 | 40 | 0 | 17 | 129 | 94 | 206 | 1.61e-42 | 149 |
| MS.gene39735.t1 | MTR_6g008995 | 63.717 | 113 | 39 | 2 | 17 | 129 | 11 | 121 | 3.43e-40 | 139 |
| MS.gene39735.t1 | MTR_6g008995 | 63.717 | 113 | 39 | 2 | 17 | 129 | 68 | 178 | 8.32e-40 | 139 |
| MS.gene39735.t1 | MTR_1g023820 | 50.926 | 108 | 11 | 2 | 17 | 124 | 18 | 83 | 7.51e-25 | 92.0 |
| MS.gene39735.t1 | MTR_7g013410 | 40.517 | 116 | 62 | 2 | 19 | 133 | 31 | 140 | 2.58e-23 | 89.0 |
| MS.gene39735.t1 | MTR_1g105955 | 38.938 | 113 | 62 | 2 | 17 | 129 | 47 | 152 | 1.36e-18 | 77.8 |
| MS.gene39735.t1 | MTR_8g062350 | 32.450 | 151 | 63 | 2 | 19 | 130 | 47 | 197 | 1.61e-17 | 75.5 |
| MS.gene39735.t1 | MTR_1g104960 | 33.333 | 114 | 76 | 0 | 16 | 129 | 43 | 156 | 2.52e-17 | 74.3 |
| MS.gene39735.t1 | MTR_4g133300 | 37.838 | 111 | 63 | 1 | 19 | 129 | 42 | 146 | 7.24e-17 | 74.7 |
| MS.gene39735.t1 | MTR_4g133470 | 36.937 | 111 | 64 | 1 | 19 | 129 | 42 | 146 | 2.49e-16 | 73.2 |
| MS.gene39735.t1 | MTR_1g105960 | 55.319 | 47 | 21 | 0 | 17 | 63 | 32 | 78 | 1.19e-13 | 63.2 |
| MS.gene39735.t1 | MTR_3g006150 | 33.333 | 111 | 72 | 2 | 20 | 129 | 39 | 148 | 6.53e-13 | 62.4 |
| MS.gene39735.t1 | MTR_3g006065 | 34.234 | 111 | 71 | 2 | 20 | 129 | 39 | 148 | 6.89e-13 | 62.8 |
| MS.gene39735.t1 | MTR_3g006065 | 66.667 | 39 | 13 | 0 | 17 | 55 | 122 | 160 | 6.90e-11 | 57.4 |
| MS.gene39735.t1 | MTR_5g055670 | 58.000 | 50 | 21 | 0 | 10 | 59 | 80 | 129 | 2.85e-12 | 60.1 |
| MS.gene39735.t1 | MTR_5g036790 | 46.774 | 62 | 33 | 0 | 68 | 129 | 16 | 77 | 4.90e-12 | 58.2 |
| MS.gene39735.t1 | MTR_2g097830 | 41.096 | 73 | 37 | 1 | 19 | 91 | 100 | 166 | 3.21e-11 | 58.2 |
| MS.gene39735.t1 | MTR_7g013380 | 30.769 | 117 | 71 | 3 | 15 | 126 | 130 | 241 | 3.65e-11 | 59.3 |
| MS.gene39735.t1 | MTR_3g006105 | 32.759 | 116 | 73 | 3 | 19 | 129 | 42 | 157 | 3.97e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39735.t1 | AT1G70060 | 70.085 | 117 | 34 | 1 | 17 | 132 | 45 | 161 | 2.81e-47 | 163 |
| MS.gene39735.t1 | AT1G70060 | 70.085 | 117 | 34 | 1 | 17 | 132 | 45 | 161 | 2.81e-47 | 163 |
| MS.gene39735.t1 | AT1G24190 | 70.435 | 115 | 34 | 0 | 17 | 131 | 45 | 159 | 6.16e-47 | 162 |
| MS.gene39735.t1 | AT1G24190 | 70.435 | 115 | 34 | 0 | 17 | 131 | 45 | 159 | 6.34e-47 | 162 |
| MS.gene39735.t1 | AT1G24190 | 70.435 | 115 | 34 | 0 | 17 | 131 | 45 | 159 | 6.79e-47 | 162 |
| MS.gene39735.t1 | AT1G59890 | 60.870 | 115 | 43 | 1 | 17 | 131 | 76 | 188 | 1.47e-39 | 141 |
| MS.gene39735.t1 | AT1G59890 | 60.870 | 115 | 43 | 1 | 17 | 131 | 76 | 188 | 1.50e-39 | 141 |
| MS.gene39735.t1 | AT1G59890 | 60.870 | 115 | 43 | 1 | 17 | 131 | 76 | 188 | 1.50e-39 | 141 |
| MS.gene39735.t1 | AT1G59890 | 60.870 | 115 | 43 | 1 | 17 | 131 | 76 | 188 | 1.68e-39 | 140 |
| MS.gene39735.t1 | AT3G01320 | 63.717 | 113 | 40 | 1 | 17 | 129 | 88 | 199 | 2.82e-39 | 140 |
| MS.gene39735.t1 | AT3G01320 | 63.717 | 113 | 40 | 1 | 17 | 129 | 88 | 199 | 2.96e-39 | 140 |
| MS.gene39735.t1 | AT5G15020 | 61.947 | 113 | 41 | 1 | 17 | 129 | 83 | 193 | 3.96e-39 | 140 |
| MS.gene39735.t1 | AT5G15020 | 61.947 | 113 | 41 | 1 | 17 | 129 | 83 | 193 | 4.24e-39 | 139 |
| MS.gene39735.t1 | AT1G24200 | 53.175 | 126 | 56 | 1 | 8 | 133 | 36 | 158 | 2.14e-38 | 129 |
| MS.gene39735.t1 | AT1G10450 | 58.036 | 112 | 45 | 1 | 20 | 131 | 67 | 176 | 1.39e-36 | 132 |
| MS.gene39735.t1 | AT1G10450 | 58.036 | 112 | 45 | 1 | 20 | 131 | 67 | 176 | 1.39e-36 | 132 |
| MS.gene39735.t1 | AT1G10450 | 58.036 | 112 | 45 | 1 | 20 | 131 | 118 | 227 | 1.53e-36 | 132 |
| MS.gene39735.t1 | AT1G70030 | 52.252 | 111 | 51 | 2 | 19 | 129 | 44 | 152 | 1.03e-30 | 108 |
| MS.gene39735.t1 | AT1G24230 | 36.134 | 119 | 71 | 3 | 15 | 132 | 115 | 229 | 1.03e-19 | 82.0 |
| MS.gene39735.t1 | AT5G35610 | 36.885 | 122 | 62 | 3 | 5 | 115 | 29 | 146 | 2.60e-16 | 71.2 |
| MS.gene39735.t1 | AT1G27280 | 35.714 | 98 | 62 | 1 | 20 | 116 | 115 | 212 | 3.15e-14 | 67.0 |
| MS.gene39735.t1 | AT1G70030 | 52.857 | 70 | 30 | 2 | 19 | 86 | 55 | 123 | 1.38e-13 | 63.9 |
| MS.gene39735.t1 | AT1G70030 | 53.968 | 63 | 28 | 1 | 19 | 81 | 55 | 116 | 4.26e-13 | 62.0 |
| MS.gene39735.t1 | AT1G24210 | 33.628 | 113 | 53 | 3 | 19 | 130 | 47 | 138 | 2.15e-11 | 58.5 |
Find 35 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTTTACAAGTCATTTA+TGG | 0.140196 | 7.1:-44964918 | MS.gene39735:CDS |
| CTCATGGCCCTTTGGCAAAA+AGG | 0.248205 | 7.1:+44965150 | None:intergenic |
| CAAGAAGATCCGGGTGGTTT+TGG | 0.249415 | 7.1:+44964714 | None:intergenic |
| TTCATCTGTGTCGTGTTGAT+TGG | 0.378078 | 7.1:-44964682 | MS.gene39735:CDS |
| TCTTTGTAGACCAGGGTGAT+AGG | 0.392252 | 7.1:+44964863 | None:intergenic |
| TTCTGTTATTATATTCATCA+TGG | 0.394484 | 7.1:-44966110 | MS.gene39735:CDS |
| GAGTTATGTGAACACGATAA+AGG | 0.446913 | 7.1:-44965062 | MS.gene39735:intron |
| AGGGTAATCTCATGGCCCTT+TGG | 0.451315 | 7.1:+44965142 | None:intergenic |
| AACCACCCGGATCTTCTTGA+AGG | 0.457397 | 7.1:-44964710 | MS.gene39735:CDS |
| TGGTTGAGGTTGCTCATCCT+CGG | 0.459938 | 7.1:+44965114 | None:intergenic |
| GGTCATAGAGACTTGATCTT+GGG | 0.467943 | 7.1:-44965181 | MS.gene39735:CDS |
| TATAATAACAGAAGAAAGGA+AGG | 0.469503 | 7.1:+44966120 | None:intergenic |
| CACATACCTCTTTGTAGACC+AGG | 0.470385 | 7.1:+44964855 | None:intergenic |
| ATAAACCCTTCAAGAAGATC+CGG | 0.477187 | 7.1:+44964704 | None:intergenic |
| TTTATGCAGACTCGGTTTCA+GGG | 0.487740 | 7.1:-44964947 | MS.gene39735:intron |
| TCTGTTATTATATTCATCAT+GGG | 0.509402 | 7.1:-44966109 | MS.gene39735:CDS |
| ATCTGTGTCGTGTTGATTGG+CGG | 0.509936 | 7.1:-44964679 | MS.gene39735:CDS |
| AGGTCATAGAGACTTGATCT+TGG | 0.513611 | 7.1:-44965182 | MS.gene39735:CDS |
| TGAATATAATAACAGAAGAA+AGG | 0.522859 | 7.1:+44966116 | None:intergenic |
| TTGCTCATCCTCGGACGAAA+GGG | 0.539598 | 7.1:+44965123 | None:intergenic |
| GGAAGGAAGTAATGCAACAT+TGG | 0.548439 | 7.1:+44966137 | None:intergenic |
| GTTGCTCATCCTCGGACGAA+AGG | 0.549267 | 7.1:+44965122 | None:intergenic |
| ACCACCCGGATCTTCTTGAA+GGG | 0.554045 | 7.1:-44964709 | MS.gene39735:CDS |
| CATATTGAATACGTACAGAA+AGG | 0.566699 | 7.1:-44964894 | MS.gene39735:CDS |
| CGGACGAAAGGGTAATCTCA+TGG | 0.581909 | 7.1:+44965134 | None:intergenic |
| TGAGATTACCCTTTCGTCCG+AGG | 0.584557 | 7.1:-44965131 | MS.gene39735:CDS |
| TAAACCCTTCAAGAAGATCC+GGG | 0.599628 | 7.1:+44964705 | None:intergenic |
| TGCATTCTTCCAAAACCACC+CGG | 0.599692 | 7.1:-44964723 | MS.gene39735:CDS |
| ATATTCATCATGGGAGCATG+AGG | 0.623357 | 7.1:-44966100 | MS.gene39735:intron |
| ATTTGTAGAGTTGATACTGA+TGG | 0.633224 | 7.1:-44965235 | MS.gene39735:intron |
| GGAAAGTAAGCCTATCACCC+TGG | 0.646683 | 7.1:-44964873 | MS.gene39735:CDS |
| TATCACCCTGGTCTACAAAG+AGG | 0.680013 | 7.1:-44964861 | MS.gene39735:intron |
| ACATACCTCTTTGTAGACCA+GGG | 0.680303 | 7.1:+44964856 | None:intergenic |
| TGGTGTCATTGAAAGAGTGA+AGG | 0.685356 | 7.1:-44965215 | MS.gene39735:CDS |
| ACCCTTCAAGAAGATCCGGG+TGG | 0.747614 | 7.1:+44964708 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGTTAATTAATATTAAAAAT+GGG | - | chr7.1:44965143-44965162 | MS.gene39735:CDS | 10.0% |
| !! | TGGTTAATTAATATTAAAAA+TGG | - | chr7.1:44965142-44965161 | MS.gene39735:CDS | 10.0% |
| !! | TATCAAAGATATTATTATTG+TGG | - | chr7.1:44965081-44965100 | MS.gene39735:CDS | 15.0% |
| !!! | GTTGTTTTTGTATATATATT+GGG | - | chr7.1:44965500-44965519 | MS.gene39735:intron | 15.0% |
| !! | AGTCTGAACTATAATATAAA+AGG | + | chr7.1:44964771-44964790 | None:intergenic | 20.0% |
| !! | ATATATATACAAAAACAACG+TGG | + | chr7.1:44965499-44965518 | None:intergenic | 20.0% |
| !! | GTCTGAACTATAATATAAAA+GGG | + | chr7.1:44964770-44964789 | None:intergenic | 20.0% |
| !! | TCTGAACTATAATATAAAAG+GGG | + | chr7.1:44964769-44964788 | None:intergenic | 20.0% |
| !! | TCTGTTATTATATTCATCAT+GGG | - | chr7.1:44964701-44964720 | MS.gene39735:CDS | 20.0% |
| !! | TGAATATAATAACAGAAGAA+AGG | + | chr7.1:44964697-44964716 | None:intergenic | 20.0% |
| !! | TTCTGTTATTATATTCATCA+TGG | - | chr7.1:44964700-44964719 | MS.gene39735:CDS | 20.0% |
| !!! | AATTGATTTGTTTATCCTTT+TGG | - | chr7.1:44965549-44965568 | MS.gene39735:intron | 20.0% |
| !!! | CGTTGTTTTTGTATATATAT+TGG | - | chr7.1:44965499-44965518 | MS.gene39735:intron | 20.0% |
| !!! | TAAAATTCAACCTTCTTTTT+TGG | + | chr7.1:44965719-44965738 | None:intergenic | 20.0% |
| ! | ATATTTCAGTTAAAGGAAGA+TGG | - | chr7.1:44965290-44965309 | MS.gene39735:intron | 25.0% |
| ! | CCTTTAACTGAAATATGATA+CGG | + | chr7.1:44965286-44965305 | None:intergenic | 25.0% |
| ! | CTGAACTATAATATAAAAGG+GGG | + | chr7.1:44964768-44964787 | None:intergenic | 25.0% |
| ! | TAGAATGTTTGTGAGTTTAA+TGG | - | chr7.1:44965772-44965791 | MS.gene39735:intron | 25.0% |
| ! | TATAATAACAGAAGAAAGGA+AGG | + | chr7.1:44964693-44964712 | None:intergenic | 25.0% |
| ! | TATAGAATCACATGTTTGTA+AGG | - | chr7.1:44964879-44964898 | MS.gene39735:CDS | 25.0% |
| ! | TCATGTTTACAAGTCATTTA+TGG | - | chr7.1:44965892-44965911 | MS.gene39735:intron | 25.0% |
| ! | TTTGTATATATATTGGGAGA+GGG | - | chr7.1:44965506-44965525 | MS.gene39735:intron | 25.0% |
| !! | ACTTCATTTTCAATCTTTTG+AGG | - | chr7.1:44965385-44965404 | MS.gene39735:intron | 25.0% |
| !! | TTTTGTATATATATTGGGAG+AGG | - | chr7.1:44965505-44965524 | MS.gene39735:intron | 25.0% |
| !!! | AGTTTTAGTTTTGAGCTTAA+TGG | - | chr7.1:44965834-44965853 | MS.gene39735:intron | 25.0% |
| AATAATCTTGCAAAGCACAA+AGG | - | chr7.1:44965458-44965477 | MS.gene39735:intron | 30.0% | |
| AGGTAAGAAAAAGATATCTC+TGG | - | chr7.1:44964730-44964749 | MS.gene39735:CDS | 30.0% | |
| CATATTGAATACGTACAGAA+AGG | - | chr7.1:44965916-44965935 | MS.gene39735:intron | 30.0% | |
| CATTCCAAATTAAAGAGTAG+TGG | + | chr7.1:44965182-44965201 | None:intergenic | 30.0% | |
| CCGTATCATATTTCAGTTAA+AGG | - | chr7.1:44965283-44965302 | MS.gene39735:intron | 30.0% | |
| GTAAGGATGAATCAGAAAAA+GGG | - | chr7.1:44964896-44964915 | MS.gene39735:CDS | 30.0% | |
| TAAATCATACCACACTACTT+GGG | + | chr7.1:44964958-44964977 | None:intergenic | 30.0% | |
| TGTAAGGATGAATCAGAAAA+AGG | - | chr7.1:44964895-44964914 | MS.gene39735:CDS | 30.0% | |
| TTAAATCATACCACACTACT+TGG | + | chr7.1:44964959-44964978 | None:intergenic | 30.0% | |
| TTCCAAATCAAAATCGTCAA+CGG | + | chr7.1:44964827-44964846 | None:intergenic | 30.0% | |
| ! | ATTTAACACCTTTTTGCCAA+AGG | - | chr7.1:44965652-44965671 | MS.gene39735:intron | 30.0% |
| ! | TTTAACACCTTTTTGCCAAA+GGG | - | chr7.1:44965653-44965672 | MS.gene39735:intron | 30.0% |
| !! | ATTTGTAGAGTTGATACTGA+TGG | - | chr7.1:44965575-44965594 | MS.gene39735:intron | 30.0% |
| !!! | TTCTTTTTTCTCTGTCTTAC+TGG | - | chr7.1:44964854-44964873 | MS.gene39735:intron | 30.0% |
| AACTCTACAAATGCACCAAA+AGG | + | chr7.1:44965567-44965586 | None:intergenic | 35.0% | |
| ATAAACCCTTCAAGAAGATC+CGG | + | chr7.1:44966109-44966128 | None:intergenic | 35.0% | |
| CTTTAACTCATACCAGAAAG+TGG | + | chr7.1:44965116-44965135 | None:intergenic | 35.0% | |
| GAGTTATGTGAACACGATAA+AGG | - | chr7.1:44965748-44965767 | MS.gene39735:intron | 35.0% | |
| GCATCCACTACTCTTTAATT+TGG | - | chr7.1:44965175-44965194 | MS.gene39735:CDS | 35.0% | |
| GTCAGGAAAATCTGTAATGT+TGG | - | chr7.1:44965986-44966005 | MS.gene39735:intron | 35.0% | |
| TGGAATATGATACCACTTTC+TGG | - | chr7.1:44965101-44965120 | MS.gene39735:CDS | 35.0% | |
| ! | AGAGTGAAGGAACTTTTTAG+AGG | - | chr7.1:44965608-44965627 | MS.gene39735:intron | 35.0% |
| ! | CTTTCTGGTATGAGTTAAAG+AGG | - | chr7.1:44965116-44965135 | MS.gene39735:CDS | 35.0% |
| !!! | AGAGTGCTTTTTTGAACATC+TGG | + | chr7.1:44965429-44965448 | None:intergenic | 35.0% |
| !!! | TCAACCTTCTTTTTTGGTTG+AGG | + | chr7.1:44965713-44965732 | None:intergenic | 35.0% |
| AATCATGATTGCACTTCTCC+AGG | - | chr7.1:44966060-44966079 | MS.gene39735:intron | 40.0% | |
| ACATACCTCTTTGTAGACCA+GGG | + | chr7.1:44965957-44965976 | None:intergenic | 40.0% | |
| AGGTCATAGAGACTTGATCT+TGG | - | chr7.1:44965628-44965647 | MS.gene39735:intron | 40.0% | |
| CAAATCAAAATCGTCAACGG+CGG | + | chr7.1:44964824-44964843 | None:intergenic | 40.0% | |
| CACAGCAATATGTCAAGTAC+TGG | + | chr7.1:44966029-44966048 | None:intergenic | 40.0% | |
| GAAACCGAGTCTGCATAAAA+AGG | + | chr7.1:44965862-44965881 | None:intergenic | 40.0% | |
| GCAACCTCAACCAAAAAAGA+AGG | - | chr7.1:44965706-44965725 | MS.gene39735:intron | 40.0% | |
| GGTATGAGTTAAAGAGGCTA+TGG | - | chr7.1:44965122-44965141 | MS.gene39735:CDS | 40.0% | |
| GGTCATAGAGACTTGATCTT+GGG | - | chr7.1:44965629-44965648 | MS.gene39735:intron | 40.0% | |
| TAAACCCTTCAAGAAGATCC+GGG | + | chr7.1:44966108-44966127 | None:intergenic | 40.0% | |
| ! | AAAGGAAGATGGAAGTGTGT+GGG | - | chr7.1:44965301-44965320 | MS.gene39735:intron | 40.0% |
| ! | AGGTATGTGCTGTTATAGTC+AGG | - | chr7.1:44965969-44965988 | MS.gene39735:intron | 40.0% |
| ! | ATATTCATCATGGGAGCATG+AGG | - | chr7.1:44964710-44964729 | MS.gene39735:CDS | 40.0% |
| ! | GGTTCCTTTTTATGCAGACT+CGG | - | chr7.1:44965855-44965874 | MS.gene39735:intron | 40.0% |
| ! | TAAAGGAAGATGGAAGTGTG+TGG | - | chr7.1:44965300-44965319 | MS.gene39735:intron | 40.0% |
| ! | TTCATCTGTGTCGTGTTGAT+TGG | - | chr7.1:44966128-44966147 | MS.gene39735:CDS | 40.0% |
| ! | TTTATGCAGACTCGGTTTCA+GGG | - | chr7.1:44965863-44965882 | MS.gene39735:intron | 40.0% |
| !! | AGCAATATGTCAAGTACTGG+AGG | + | chr7.1:44966026-44966045 | None:intergenic | 40.0% |
| !! | TGGTGTCATTGAAAGAGTGA+AGG | - | chr7.1:44965595-44965614 | MS.gene39735:intron | 40.0% |
| !! | TTTTATGCAGACTCGGTTTC+AGG | - | chr7.1:44965862-44965881 | MS.gene39735:intron | 40.0% |
| CACATACCTCTTTGTAGACC+AGG | + | chr7.1:44965958-44965977 | None:intergenic | 45.0% | |
| TATCACCCTGGTCTACAAAG+AGG | - | chr7.1:44965949-44965968 | MS.gene39735:intron | 45.0% | |
| TCTTTGTAGACCAGGGTGAT+AGG | + | chr7.1:44965950-44965969 | None:intergenic | 45.0% | |
| TGCATTCTTCCAAAACCACC+CGG | - | chr7.1:44966087-44966106 | MS.gene39735:intron | 45.0% | |
| TTTGGAAGAATGCAGCAACC+TGG | + | chr7.1:44966081-44966100 | None:intergenic | 45.0% | |
| !! | ATCTGTGTCGTGTTGATTGG+CGG | - | chr7.1:44966131-44966150 | MS.gene39735:CDS | 45.0% |
| !!! | CGCCGTTGACGATTTTGATT+TGG | - | chr7.1:44964822-44964841 | MS.gene39735:intron | 45.0% |
| AACCACCCGGATCTTCTTGA+AGG | - | chr7.1:44966100-44966119 | MS.gene39735:intron | 50.0% | |
| ACCACCCGGATCTTCTTGAA+GGG | - | chr7.1:44966101-44966120 | MS.gene39735:CDS | 50.0% | |
| AGGGTAATCTCATGGCCCTT+TGG | + | chr7.1:44965671-44965690 | None:intergenic | 50.0% | |
| CGGACGAAAGGGTAATCTCA+TGG | + | chr7.1:44965679-44965698 | None:intergenic | 50.0% | |
| CTCATGGCCCTTTGGCAAAA+AGG | + | chr7.1:44965663-44965682 | None:intergenic | 50.0% | |
| GGAAAGTAAGCCTATCACCC+TGG | - | chr7.1:44965937-44965956 | MS.gene39735:intron | 50.0% | |
| TGAGATTACCCTTTCGTCCG+AGG | - | chr7.1:44965679-44965698 | MS.gene39735:intron | 50.0% | |
| TGGTTGAGGTTGCTCATCCT+CGG | + | chr7.1:44965699-44965718 | None:intergenic | 50.0% | |
| TTGCTCATCCTCGGACGAAA+GGG | + | chr7.1:44965690-44965709 | None:intergenic | 50.0% | |
| ! | CAAGAAGATCCGGGTGGTTT+TGG | + | chr7.1:44966099-44966118 | None:intergenic | 50.0% |
| ACCCTTCAAGAAGATCCGGG+TGG | + | chr7.1:44966105-44966124 | None:intergenic | 55.0% | |
| CAGCAAGCTCCCAAGTAGTG+TGG | - | chr7.1:44964946-44964965 | MS.gene39735:intron | 55.0% | |
| GTTGCTCATCCTCGGACGAA+AGG | + | chr7.1:44965691-44965710 | None:intergenic | 55.0% | |
| CGTCAACGGCGGCATAGTCA+CGG | + | chr7.1:44964813-44964832 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 44964676 | 44966156 | 44964676 | ID=MS.gene39735 |
| chr7.1 | mRNA | 44964676 | 44966156 | 44964676 | ID=MS.gene39735.t1;Parent=MS.gene39735 |
| chr7.1 | exon | 44966101 | 44966156 | 44966101 | ID=MS.gene39735.t1.exon1;Parent=MS.gene39735.t1 |
| chr7.1 | CDS | 44966101 | 44966156 | 44966101 | ID=cds.MS.gene39735.t1;Parent=MS.gene39735.t1 |
| chr7.1 | exon | 44965063 | 44965249 | 44965063 | ID=MS.gene39735.t1.exon2;Parent=MS.gene39735.t1 |
| chr7.1 | CDS | 44965063 | 44965249 | 44965063 | ID=cds.MS.gene39735.t1;Parent=MS.gene39735.t1 |
| chr7.1 | exon | 44964862 | 44964960 | 44964862 | ID=MS.gene39735.t1.exon3;Parent=MS.gene39735.t1 |
| chr7.1 | CDS | 44964862 | 44964960 | 44964862 | ID=cds.MS.gene39735.t1;Parent=MS.gene39735.t1 |
| chr7.1 | exon | 44964676 | 44964750 | 44964676 | ID=MS.gene39735.t1.exon4;Parent=MS.gene39735.t1 |
| chr7.1 | CDS | 44964676 | 44964750 | 44964676 | ID=cds.MS.gene39735.t1;Parent=MS.gene39735.t1 |
| Gene Sequence |
| Protein sequence |