AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39801

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39801.t1 MTR_5g088060 77.433 483 46 5 176 633 17 461 0.0 691
MS.gene39801.t1 MTR_5g088060 90.857 175 16 0 1 175 1 175 2.18e-105 327
MS.gene39801.t1 MTR_5g488160 77.433 483 46 5 176 633 17 461 0.0 691
MS.gene39801.t1 MTR_5g488160 90.857 175 16 0 1 175 1 175 2.18e-105 327
MS.gene39801.t1 MTR_5g088010 88.142 253 21 3 386 633 1 249 2.06e-147 427
MS.gene39801.t1 MTR_5g088005 82.209 163 16 1 5 167 12 161 7.71e-85 263
MS.gene39801.t1 MTR_5g088005 64.444 180 16 3 176 354 24 156 2.70e-61 201
MS.gene39801.t1 MTR_5g088200 72.038 211 15 3 9 175 23 233 3.05e-83 280
MS.gene39801.t1 MTR_5g027570 64.681 235 68 7 357 580 1 231 1.43e-82 259
MS.gene39801.t1 MTR_5g027770 48.295 352 82 9 7 329 31 311 1.04e-73 239
MS.gene39801.t1 MTR_5g027770 61.842 152 41 2 3 137 160 311 4.07e-44 160
MS.gene39801.t1 MTR_5g027770 54.878 82 23 3 370 445 98 171 1.62e-14 75.5
MS.gene39801.t1 MTR_5g027550 48.973 292 71 9 357 633 1 229 4.32e-60 200
MS.gene39801.t1 MTR_5g027780 40.969 227 42 5 176 402 40 174 3.28e-31 120
MS.gene39801.t1 MTR_5g027780 50.420 119 24 2 13 123 36 127 3.93e-21 92.0
MS.gene39801.t1 MTR_8g063600 58.228 79 31 2 438 515 103 180 2.25e-22 98.2
MS.gene39801.t1 MTR_8g063870 51.064 94 45 1 422 515 74 166 4.19e-22 97.1
MS.gene39801.t1 MTR_5g069710 58.228 79 29 2 442 519 134 209 4.95e-22 97.4
MS.gene39801.t1 MTR_3g462790 64.179 67 21 1 442 508 149 212 8.84e-22 97.1
MS.gene39801.t1 MTR_1g111830 39.080 174 80 7 354 508 23 189 3.41e-21 93.6
MS.gene39801.t1 MTR_5g081860 56.790 81 33 2 429 508 113 192 7.61e-21 93.2
MS.gene39801.t1 MTR_7g067080 60.294 68 24 1 442 509 142 206 2.83e-20 92.4
MS.gene39801.t1 MTR_4g111975 42.735 117 57 5 438 552 135 243 3.58e-20 92.0
MS.gene39801.t1 MTR_1g048660 55.556 72 29 1 442 513 14 82 1.43e-18 81.3
MS.gene39801.t1 MTR_3g104370 48.571 70 36 0 442 511 93 162 2.60e-18 85.1
MS.gene39801.t1 MTR_5g075760 42.241 116 64 2 397 512 64 176 2.90e-18 84.3
MS.gene39801.t1 MTR_2g100930 53.846 65 27 1 442 506 111 172 1.47e-17 85.1
MS.gene39801.t1 MTR_4g100630 51.515 66 27 2 442 506 97 158 1.02e-16 82.0
MS.gene39801.t1 MTR_4g015130 56.667 60 23 1 450 509 3 59 2.30e-16 74.7
MS.gene39801.t1 MTR_8g101650 65.217 46 16 0 442 487 107 152 6.34e-16 79.0
MS.gene39801.t1 MTR_6g092540 52.308 65 28 1 442 506 99 160 6.76e-16 79.0
MS.gene39801.t1 MTR_5g037080 67.391 46 15 0 442 487 104 149 7.36e-16 79.3
MS.gene39801.t1 MTR_4g107230 68.889 45 14 0 442 486 86 130 9.99e-16 78.6
MS.gene39801.t1 MTR_5g075790 39.200 125 54 3 397 512 73 184 1.73e-15 76.6
MS.gene39801.t1 MTR_1g083180 39.683 126 55 7 408 515 13 135 4.20e-15 74.3
MS.gene39801.t1 MTR_2g090305 41.558 77 42 1 442 518 30 103 4.71e-14 71.6
MS.gene39801.t1 MTR_1g033620 55.932 59 22 2 456 513 21 76 1.22e-13 71.6
MS.gene39801.t1 MTR_0036s0260 40.260 77 43 1 442 518 30 103 1.39e-13 70.5
MS.gene39801.t1 MTR_3g070110 46.667 90 40 3 441 522 96 185 3.42e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39801.t1 AT5G58900 40.441 136 65 3 442 572 143 267 1.03e-22 99.4
MS.gene39801.t1 AT5G08520 56.790 81 31 2 438 517 115 192 1.94e-22 98.6
MS.gene39801.t1 AT5G04760 60.526 76 27 1 433 508 92 164 2.56e-22 96.3
MS.gene39801.t1 AT5G01200 61.194 67 23 1 442 508 148 211 4.11e-21 94.0
MS.gene39801.t1 AT2G38090 57.692 78 28 3 435 510 135 209 1.86e-20 92.8
MS.gene39801.t1 AT1G49010 53.659 82 33 3 438 517 131 209 5.67e-20 91.7
MS.gene39801.t1 AT5G61620 54.545 77 31 2 434 509 101 174 5.62e-19 89.0
MS.gene39801.t1 AT3G11280 43.443 122 50 5 442 552 129 242 2.63e-18 85.9
MS.gene39801.t1 AT3G11280 43.443 122 50 5 442 552 129 242 2.63e-18 85.9
MS.gene39801.t1 AT5G23650 52.632 76 33 1 442 517 122 194 4.68e-18 86.3
MS.gene39801.t1 AT3G10580 45.098 102 49 3 420 520 74 169 1.94e-17 83.2
MS.gene39801.t1 AT3G10580 45.098 102 49 3 420 520 74 169 2.11e-17 83.6
MS.gene39801.t1 AT5G05790 55.000 80 28 3 438 512 128 204 2.76e-17 83.2
MS.gene39801.t1 AT5G05790 55.000 80 28 3 438 512 128 204 2.76e-17 83.2
MS.gene39801.t1 AT5G47390 45.745 94 44 4 442 532 98 187 3.79e-17 84.0
MS.gene39801.t1 AT1G70000 67.391 46 15 0 442 487 100 145 1.95e-16 80.1
MS.gene39801.t1 AT1G70000 67.391 46 15 0 442 487 100 145 1.95e-16 80.1
MS.gene39801.t1 AT5G56840 55.172 58 26 0 442 499 93 150 2.21e-16 79.3
MS.gene39801.t1 AT4G09450 54.412 68 28 1 442 509 93 157 3.92e-16 77.8
MS.gene39801.t1 AT3G16350 65.217 46 16 0 442 487 139 184 1.42e-15 79.3
MS.gene39801.t1 AT1G74840 68.889 45 14 0 442 486 98 142 1.43e-15 77.0
MS.gene39801.t1 AT1G74840 68.889 45 14 0 442 486 98 142 2.16e-15 77.0
MS.gene39801.t1 AT1G19000 54.839 62 27 1 426 486 87 148 2.84e-15 77.0
MS.gene39801.t1 AT1G19000 54.839 62 27 1 426 486 87 148 2.84e-15 77.0
MS.gene39801.t1 AT3G10590 40.816 98 49 3 417 509 83 176 9.34e-13 68.2

Find 177 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCATATCTTTCACATTT+TGG 0.099316 5.4:-69236828 None:intergenic
TCACCTTGTTCTTGGGTATT+TGG 0.139349 5.4:-69234719 None:intergenic
TCAACATGATTCATAGGTTT+TGG 0.219569 5.4:-69233989 None:intergenic
TCAACATTATTCATAGGTTT+TGG 0.236710 5.4:-69234842 None:intergenic
CCTGCTGCTGCCGGGGATAC+AGG 0.250754 5.4:-69234593 None:intergenic
CTGTCCAATGCCCTTTCCTT+GGG 0.257949 5.4:-69236455 None:intergenic
TCCTATAGCTCCTTCTGTTC+AGG 0.275418 5.4:+69234898 MS.gene39801:CDS
CTTGGGGCATGACTTTCTTC+TGG 0.281577 5.4:-69236438 None:intergenic
TCCTAGAGCTCCTTCTGTTC+AGG 0.288148 5.4:+69234045 MS.gene39801:CDS
CCTGCTGCAGCCGGGGATAC+AGG 0.292706 5.4:-69235540 None:intergenic
TTCTCAAGTTTGTTCATATC+AGG 0.295923 5.4:-69237213 None:intergenic
TCACATGGTCACCTTGTTCT+TGG 0.300461 5.4:-69234727 None:intergenic
GTCTGTTGCATTCCTTTAGA+AGG 0.313430 5.4:-69236970 None:intergenic
TCTGTCCAATGCCCTTTCCT+TGG 0.314383 5.4:-69236456 None:intergenic
CTGAACATGTTTGGCATCAT+TGG 0.316454 5.4:-69234642 None:intergenic
TGGGTATTTGGCCTTCCATT+TGG 0.324095 5.4:-69234707 None:intergenic
TATGCTTTCCCACCTGGTTC+AGG 0.329227 5.4:+69235489 MS.gene39801:CDS
CCATTTGTGTTGTTGCGCTT+GGG 0.329671 5.4:-69235363 None:intergenic
TGGATATTTGGCCTTCCATT+TGG 0.341904 5.4:-69235654 None:intergenic
CCACCAAAATGTGAAAGATA+TGG 0.352224 5.4:+69236825 MS.gene39801:CDS
CACATGGTCACCTTGTTCTT+GGG 0.355028 5.4:-69234726 None:intergenic
GCCATTTGTGTTGTTGCGCT+TGG 0.355090 5.4:-69235364 None:intergenic
TAGAAGAAATCAAACGGTTC+TGG 0.355215 5.4:+69235288 MS.gene39801:intron
CCTGCATATGCTTTCCCACC+TGG 0.358776 5.4:+69235483 MS.gene39801:CDS
TGAGAAGATGCGCAACTTGT+TGG 0.359768 5.4:+69237230 MS.gene39801:CDS
CACCGGAGGCTGAACATGTT+TGG 0.362724 5.4:-69234651 None:intergenic
CACCGGAGGCTGAACATGTT+TGG 0.362724 5.4:-69235598 None:intergenic
ACATTCTCAACATGATTCAT+AGG 0.366509 5.4:-69233995 None:intergenic
GATGCTCCTGTGTTGGTTGT+TGG 0.370634 5.4:+69234782 MS.gene39801:CDS
TTGGATAAAGCAACACCAAC+TGG 0.371101 5.4:-69237176 None:intergenic
GATGTTCCTGTGTTGGTTGT+TGG 0.372353 5.4:+69233929 MS.gene39801:CDS
AAACAGAAATCAAACGGTTC+TGG 0.380690 5.4:+69234437 MS.gene39801:intron
TGCTATGCTCAGAGGGATCT+TGG 0.382368 5.4:-69236281 None:intergenic
ACATTCTCAACATTATTCAT+AGG 0.384677 5.4:-69234848 None:intergenic
GTGTTGTTGCGCTTGGGGCC+TGG 0.396203 5.4:-69235357 None:intergenic
AACCTTGTCCTGCTGCTGCC+GGG 0.402092 5.4:-69234601 None:intergenic
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5.4:+69234018 MS.gene39801:CDS
TTCTGTGCCTAGTGTTGGTC+AGG 0.402578 5.4:+69234871 MS.gene39801:CDS
GGACGAAAATTCGGAGCAAC+AGG 0.414645 5.4:-69235432 None:intergenic
CTGAACATGTTTGGCATCAA+TGG 0.415429 5.4:-69235589 None:intergenic
TATGCTATTGATTATCCAAA+TGG 0.421444 5.4:+69235639 MS.gene39801:CDS
CCCAAGCGCAACAACACAAA+TGG 0.425501 5.4:+69235363 MS.gene39801:CDS
AAATATTTCAAAAGAATTTG+TGG 0.425853 5.4:+69236753 MS.gene39801:CDS
TCCTTTAGTCACTGCTCCTA+TGG 0.430956 5.4:+69237083 MS.gene39801:CDS
GGATTCTCGCCATTAGGATA+AGG 0.435944 5.4:-69234566 None:intergenic
TATGCTGTTAATTATCCAAA+TGG 0.436533 5.4:+69234692 MS.gene39801:CDS
GGATTCTCACCATTAGGATA+AGG 0.437709 5.4:-69235513 None:intergenic
GGCTTAGGATTCTCGCCATT+AGG 0.439906 5.4:-69234572 None:intergenic
TGTGAAAGATATGGAGAAGA+AGG 0.441203 5.4:+69236834 MS.gene39801:CDS
GAACAACAACAGGAGAAAAC+TGG 0.441684 5.4:+69236306 MS.gene39801:CDS
GGCTTAGGATTCTCACCATT+AGG 0.442479 5.4:-69235519 None:intergenic
ATTTGTGTTACTGTTGCGCT+TGG 0.444589 5.4:-69234513 None:intergenic
AATCGGTTCTACAATTCCTT+CGG 0.444800 5.4:+69237038 MS.gene39801:CDS
GGTGATGGCATCTTATTCTT+CGG 0.445274 5.4:-69234470 None:intergenic
ATTGTTCTTGTTGTTTAAGA+TGG 0.446908 5.4:-69237139 None:intergenic
AAACCTTGTCCTGCTGCTGC+CGG 0.447814 5.4:-69234602 None:intergenic
ACCACCCGACTCAATGATAT+CGG 0.449690 5.4:-69236331 None:intergenic
TTACTGTTGCGCTTGGGACC+TGG 0.453629 5.4:-69234506 None:intergenic
CCTGTATCCCCGGCTGCAGC+AGG 0.462309 5.4:+69235540 MS.gene39801:CDS
TTGGTGTTGCTTTATCCAAT+CGG 0.462526 5.4:+69237180 MS.gene39801:CDS
CCTGTATCCCCGGCAGCAGC+AGG 0.464792 5.4:+69234593 MS.gene39801:CDS
GGTTCAGGACCTTATCCTAA+TGG 0.464993 5.4:+69235504 MS.gene39801:CDS
AACCTTGTCCTGCTGCAGCC+GGG 0.469596 5.4:-69235548 None:intergenic
GGTACCCTAGGACGAAAATT+CGG 0.472201 5.4:-69235441 None:intergenic
GCTCATTTAAATCAATTTGA+AGG 0.475975 5.4:-69236248 None:intergenic
TCAAATTGATTTAAATGAGC+CGG 0.477484 5.4:+69236251 MS.gene39801:CDS
AAACCTTGTCCTGCTGCAGC+CGG 0.478250 5.4:-69235549 None:intergenic
GCATAGCATGGAACAACAAC+AGG 0.485938 5.4:+69236296 MS.gene39801:CDS
ACAGGCGGCTGCTGATGATA+AGG 0.487188 5.4:-69235414 None:intergenic
GGCTTTCGATAGCGCGGTGA+TGG 0.487676 5.4:-69234485 None:intergenic
AGAAAGAGCTGGCGAAGACT+TGG 0.491824 5.4:-69233954 None:intergenic
AGAAAGAGCCGGCGAAGACT+TGG 0.492169 5.4:-69234807 None:intergenic
GCTGCCGGGGATACAGGCTT+AGG 0.492601 5.4:-69234587 None:intergenic
AAAGTCATGCCCCAAGGAAA+GGG 0.493395 5.4:+69236445 MS.gene39801:CDS
ATGTTGTGCTTGCTGCCAAT+CGG 0.496477 5.4:+69237021 MS.gene39801:CDS
ACGGTTCTGGAAATTTCAAT+CGG 0.496809 5.4:+69235301 MS.gene39801:CDS
CAAAGTGTGATTCCTTCTAA+AGG 0.497432 5.4:+69236958 MS.gene39801:CDS
GTGACGATGCCTTATCCTAA+TGG 0.498221 5.4:+69234557 MS.gene39801:CDS
GAATCCTAAGCCTGTATCCC+CGG 0.504373 5.4:+69234583 MS.gene39801:CDS
GCAGCCGGGGATACAGGCTT+AGG 0.505668 5.4:-69235534 None:intergenic
GAATCCTAAGCCTGTATCCC+CGG 0.509484 5.4:+69235530 MS.gene39801:CDS
CATTTGTGTTGTTGCGCTTG+GGG 0.510276 5.4:-69235362 None:intergenic
TGCCAAACATGTTCAGCCTC+CGG 0.511829 5.4:+69235596 MS.gene39801:CDS
TGCCAAACATGTTCAGCCTC+CGG 0.513848 5.4:+69234649 MS.gene39801:CDS
TAATTAACAGCATAAGCATT+CGG 0.516489 5.4:-69234683 None:intergenic
TCACCGCGCTATCGAAAGCC+AGG 0.521803 5.4:+69234488 MS.gene39801:CDS
TTTGTGTTACTGTTGCGCTT+GGG 0.522204 5.4:-69234512 None:intergenic
ATGCCCCAAGGAAAGGGCAT+TGG 0.524782 5.4:+69236451 MS.gene39801:CDS
TCACCATGCTATCGAAAGCC+AGG 0.525059 5.4:+69235339 MS.gene39801:CDS
GCATGGCTAGCAATTTGAGT+TGG 0.525594 5.4:-69236787 None:intergenic
TAGTGTTGATGCTCCTGTGT+TGG 0.526887 5.4:+69234775 MS.gene39801:CDS
GAAAGTCATGCCCCAAGGAA+AGG 0.527463 5.4:+69236444 MS.gene39801:CDS
ATGATTAAACAGAAATCAAA+CGG 0.527832 5.4:+69234431 MS.gene39801:intron
GTAATTATGGTGAGGATCAG+AGG 0.529504 5.4:+69233869 None:intergenic
GTCTCATGTTGTTGTTCCAT+AGG 0.529730 5.4:-69237099 None:intergenic
ATTAAATAGAAGAAATCAAA+CGG 0.530787 5.4:+69235282 MS.gene39801:intron
GGCACCGATATCATTGAGTC+GGG 0.531762 5.4:+69236327 MS.gene39801:CDS
TAATCAATAGCATAAGCATT+CGG 0.533630 5.4:-69235630 None:intergenic
CAAGGTGACCATGTGAATCA+TGG 0.533701 5.4:+69234734 MS.gene39801:CDS
TGTTCCATGCTATGCTCAGA+GGG 0.536332 5.4:-69236288 None:intergenic
ACCTGAACAGAAGGAGCTAT+AGG 0.539393 5.4:-69234899 None:intergenic
AAGCGCAACAGTAACACAAA+TGG 0.541697 5.4:+69234515 MS.gene39801:CDS
TGTTGGAACCAAGTCTTCGC+CGG 0.542383 5.4:+69234799 MS.gene39801:CDS
TGATAAGGCCTCGTCGCCAC+AGG 0.544440 5.4:-69235399 None:intergenic
GGCTTTCGATAGCATGGTGA+TGG 0.547691 5.4:-69235336 None:intergenic
ATCAGAGTTTAGAATTGCAA+TGG 0.548775 5.4:-69236355 None:intergenic
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5.4:+69234013 MS.gene39801:CDS
AATGTTTCTGTGCCTAGTGT+TGG 0.550067 5.4:+69234866 MS.gene39801:CDS
TCCCCGGCTGCAGCAGGACA+AGG 0.550986 5.4:+69235546 MS.gene39801:CDS
GGGCCTGGCTTTCGATAGCA+TGG 0.552238 5.4:-69235342 None:intergenic
TTTAAGATGGCAGTGTCTTG+AGG 0.553601 5.4:-69237126 None:intergenic
ATTTAAATCAATTTGAAGGA+GGG 0.554059 5.4:-69236244 None:intergenic
AACAAACGAACCTGAACAGA+AGG 0.557127 5.4:-69234908 None:intergenic
TCCATAGGAGCAGTGACTAA+AGG 0.557140 5.4:-69237084 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5.4:-69234665 None:intergenic
TTCGGATCTCCTTGCACCGG+AGG 0.558249 5.4:-69235612 None:intergenic
TGTCCAATGCCCTTTCCTTG+GGG 0.558952 5.4:-69236454 None:intergenic
ATGTGAGGTGGAGGTACCCT+AGG 0.561843 5.4:-69235453 None:intergenic
ACCTGAACAGAAGGAGCTCT+AGG 0.562137 5.4:-69234046 None:intergenic
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5.4:+69234656 MS.gene39801:CDS
CATGTTCAGCCTCCGGTGCA+AGG 0.562364 5.4:+69235603 MS.gene39801:CDS
TTGGCATCATTGGCATGAGC+AGG 0.563369 5.4:-69234632 None:intergenic
AACAATCGAACCTGAACAGA+AGG 0.565912 5.4:-69234055 None:intergenic
ACCTTGTCCTGCTGCTGCCG+GGG 0.566255 5.4:-69234600 None:intergenic
TTGTTCCATGCTATGCTCAG+AGG 0.567759 5.4:-69236289 None:intergenic
GAGGGATCTTGGACTGAAGC+CGG 0.570243 5.4:-69236270 None:intergenic
CATTTAAATCAATTTGAAGG+AGG 0.570848 5.4:-69236245 None:intergenic
TCCCCGGCAGCAGCAGGACA+AGG 0.572616 5.4:+69234599 MS.gene39801:CDS
GGATAAGGCATCGTCACCAC+AGG 0.573697 5.4:-69234551 None:intergenic
TCAGGAAGTGTAGAACCGAT+TGG 0.577352 5.4:-69237195 None:intergenic
ACCTTGTCCTGCTGCAGCCG+GGG 0.578501 5.4:-69235547 None:intergenic
AAGTGTTGATGTTCCTGTGT+TGG 0.580284 5.4:+69233922 MS.gene39801:CDS
GCATCATTGGCATGAGCAGG+TGG 0.581815 5.4:-69234629 None:intergenic
TGGCACCGATATCATTGAGT+CGG 0.583638 5.4:+69236326 MS.gene39801:CDS
GGAACAGCAATGTGAGGTGG+AGG 0.583732 5.4:-69235462 None:intergenic
GAAGAAAAGTAATTATGGTG+AGG 0.586984 5.4:+69233861 None:intergenic
ATTGGCAGCAAGCACAACAT+AGG 0.587278 5.4:-69237018 None:intergenic
GTTTGAGCATGAGAAAGAGC+TGG 0.587648 5.4:-69233965 None:intergenic
CCAGGTGGGAAAGCATATGC+AGG 0.588904 5.4:-69235483 None:intergenic
TTAGGATAAGGTCCTGAACC+AGG 0.588996 5.4:-69235501 None:intergenic
ACACTTTGTAGCTCAACTGA+AGG 0.589388 5.4:-69236943 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.591510 5.4:-69234025 None:intergenic
GTTTGAGCATCAGAAAGAGC+CGG 0.593248 5.4:-69234818 None:intergenic
AGATCCCTCTGAGCATAGCA+TGG 0.596307 5.4:+69236284 MS.gene39801:CDS
TGGATAAAGCAACACCAACT+GGG 0.597123 5.4:-69237175 None:intergenic
CTGTTAATTATCCAAATGGA+AGG 0.601168 5.4:+69234696 MS.gene39801:CDS
GAAGGAATTGTAGAACCGAT+TGG 0.605792 5.4:-69237036 None:intergenic
CGAAAATTCGGAGCAACAGG+CGG 0.606908 5.4:-69235429 None:intergenic
ATTAAACAAGAATGACACAT+TGG 0.608999 5.4:+69236888 MS.gene39801:CDS
GCATCAATGGCATGAGCAGG+TGG 0.609092 5.4:-69235576 None:intergenic
GGAGCAACCTGACCAACACT+AGG 0.611273 5.4:-69234878 None:intergenic
ACCGATATCATTGAGTCGGG+TGG 0.615037 5.4:+69236330 MS.gene39801:CDS
CTATTGATTATCCAAATGGA+AGG 0.618008 5.4:+69235643 MS.gene39801:CDS
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5.4:-69234668 None:intergenic
GCATTCGGATCTCCTTGCAC+CGG 0.618195 5.4:-69235615 None:intergenic
TTCACTTTCCTGTGGCGACG+AGG 0.622515 5.4:+69235391 MS.gene39801:CDS
TTGGCATCAATGGCATGAGC+AGG 0.623729 5.4:-69235579 None:intergenic
ATCGTCACCACAGGAAAGTG+AGG 0.627432 5.4:-69234542 None:intergenic
CAGAAGAAAGTCATGCCCCA+AGG 0.636413 5.4:+69236439 MS.gene39801:CDS
GCAGGAACAGCAATGTGAGG+TGG 0.639750 5.4:-69235465 None:intergenic
GTGACCATGTGAATCATGGT+CGG 0.644274 5.4:+69234738 MS.gene39801:CDS
AAGATGGCAGTGTCTTGAGG+AGG 0.644314 5.4:-69237123 None:intergenic
AGGCCAAATACCCAAGAACA+AGG 0.645778 5.4:+69234716 MS.gene39801:CDS
TGACAACTTGCAAACCCAGT+TGG 0.648867 5.4:+69237161 MS.gene39801:CDS
AACACAGGAGCATCAACACT+AGG 0.653659 5.4:-69234773 None:intergenic
ATTATGGTGAGGATCAGAGG+AGG 0.653905 5.4:+69233872 None:intergenic
TGGCACGCTTCACTTTCCTG+TGG 0.655390 5.4:+69235383 MS.gene39801:CDS
GATAAGGTCCTGAACCAGGT+GGG 0.657071 5.4:-69235497 None:intergenic
AAGGAAAGGGCATTGGACAG+AGG 0.658250 5.4:+69236458 MS.gene39801:CDS
GGATCAGAGGAGGAAAGCAG+AGG 0.659593 5.4:+69233882 MS.gene39801:CDS
TGGCATGCCTCACTTTCCTG+TGG 0.662752 5.4:+69234535 MS.gene39801:CDS
GGACCTGGCTTTCGATAGCG+CGG 0.664348 5.4:-69234491 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5.4:-69233935 None:intergenic
TTGGTTCCAACAACCAACAC+AGG 0.665985 5.4:-69234788 None:intergenic
TATGCAGGAACAGCAATGTG+AGG 0.684479 5.4:-69235468 None:intergenic
GGATAAGGTCCTGAACCAGG+TGG 0.691288 5.4:-69235498 None:intergenic
GATGCCGACCATGATTCACA+TGG 0.766610 5.4:-69234742 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATAACTTTCAAACAT+AGG - chr5.4:69236522-69236541 None:intergenic 15.0%
!! AAATATTTCAAAAGAATTTG+TGG + chr5.4:69236753-69236772 MS.gene39801:CDS 15.0%
!! ATTAAATAGAAGAAATCAAA+CGG + chr5.4:69235282-69235301 MS.gene39801:intron 15.0%
!! ATGATTAAACAGAAATCAAA+CGG + chr5.4:69234431-69234450 MS.gene39801:intron 20.0%
!! ATTTAAATCAATTTGAAGGA+GGG - chr5.4:69236247-69236266 None:intergenic 20.0%
!! TAATTCAAATTGGATGAAAT+TGG + chr5.4:69236155-69236174 MS.gene39801:intron 20.0%
!! TGAAAGTTAAGAAAATTACT+TGG - chr5.4:69235994-69236013 None:intergenic 20.0%
!! TTCAAAAAATATTATGCATG+TGG + chr5.4:69236129-69236148 MS.gene39801:intron 20.0%
!!! ATATATAGGTTGTTTTTGAA+GGG + chr5.4:69236700-69236719 MS.gene39801:intron 20.0%
!!! ATTTTCTTAACTTTCATGAT+TGG + chr5.4:69235998-69236017 MS.gene39801:intron 20.0%
!!! CATGCATAATATTTTTTGAA+TGG - chr5.4:69236129-69236148 None:intergenic 20.0%
!!! TATATATAGGTTGTTTTTGA+AGG + chr5.4:69236699-69236718 MS.gene39801:intron 20.0%
!!! TATTTTTTGTATAGAAAGCA+TGG + chr5.4:69236197-69236216 MS.gene39801:intron 20.0%
! AAACAACGAGTCAAAAATAT+TGG + chr5.4:69235127-69235146 MS.gene39801:intron 25.0%
! ACATTCTCAACATTATTCAT+AGG - chr5.4:69234851-69234870 None:intergenic 25.0%
! AGTATGATATCTTCTTGTTA+TGG + chr5.4:69235943-69235962 MS.gene39801:intron 25.0%
! ATCATATAAAAGACAAGATC+AGG - chr5.4:69235830-69235849 None:intergenic 25.0%
! ATTAAACAAGAATGACACAT+TGG + chr5.4:69236888-69236907 MS.gene39801:CDS 25.0%
! CACATTCATTCTCTATATAT+AGG + chr5.4:69236686-69236705 MS.gene39801:intron 25.0%
! CATGTGGATATAATTCAAAT+TGG + chr5.4:69236145-69236164 MS.gene39801:intron 25.0%
! CATTTAAATCAATTTGAAGG+AGG - chr5.4:69236248-69236267 None:intergenic 25.0%
! GCTCATTTAAATCAATTTGA+AGG - chr5.4:69236251-69236270 None:intergenic 25.0%
! TAAACAACGAGTGAAAAATA+TGG + chr5.4:69234276-69234295 MS.gene39801:intron 25.0%
! TAATCAATAGCATAAGCATT+CGG - chr5.4:69235633-69235652 None:intergenic 25.0%
! TAATTAACAGCATAAGCATT+CGG - chr5.4:69234686-69234705 None:intergenic 25.0%
! TATGCTGTTAATTATCCAAA+TGG + chr5.4:69234692-69234711 MS.gene39801:CDS 25.0%
! TCTACAATATTCTTAACTCT+GGG + chr5.4:69234363-69234382 MS.gene39801:intron 25.0%
! TTCTACAATATTCTTAACTC+TGG + chr5.4:69234362-69234381 MS.gene39801:intron 25.0%
! TTCTTATGCTTGCAATAATA+TGG - chr5.4:69235065-69235084 None:intergenic 25.0%
!! GTTTGATTTCTGTTTAATCA+TGG - chr5.4:69234432-69234451 None:intergenic 25.0%
!! TATGCTATTGATTATCCAAA+TGG + chr5.4:69235639-69235658 MS.gene39801:CDS 25.0%
!! TCAAATTGATTTAAATGAGC+CGG + chr5.4:69236251-69236270 MS.gene39801:CDS 25.0%
!! TCAACATTATTCATAGGTTT+TGG - chr5.4:69234845-69234864 None:intergenic 25.0%
!! TTAGAGTAATGTGATTTTGA+TGG + chr5.4:69234985-69235004 MS.gene39801:intron 25.0%
!! TTAGTGTAATGTGATTTTGA+TGG + chr5.4:69234132-69234151 MS.gene39801:intron 25.0%
!!! AGGCATAATTGATTTGATTA+AGG + chr5.4:69236037-69236056 MS.gene39801:intron 25.0%
!!! ATTGTTCTTGTTGTTTAAGA+TGG - chr5.4:69237142-69237161 None:intergenic 25.0%
!!! TATATAGGTTGTTTTTGAAG+GGG + chr5.4:69236701-69236720 MS.gene39801:intron 25.0%
!!! TATTGTTTTTTTCCCTTCAA+TGG + chr5.4:69235173-69235192 MS.gene39801:intron 25.0%
!!! TTGGTGGATAAAGTATTTTT+GGG - chr5.4:69236812-69236831 None:intergenic 25.0%
!!! TTTGGTGGATAAAGTATTTT+TGG - chr5.4:69236813-69236832 None:intergenic 25.0%
ACATTCTCAACATGATTCAT+AGG - chr5.4:69233998-69234017 None:intergenic 30.0%
AGAAGGAGAAAAAGAGAAAA+AGG + chr5.4:69236851-69236870 MS.gene39801:CDS 30.0%
CTCTTATGCTTGCAATAATA+TGG - chr5.4:69234213-69234232 None:intergenic 30.0%
CTGTTAATTATCCAAATGGA+AGG + chr5.4:69234696-69234715 MS.gene39801:CDS 30.0%
TGGAGTCGACAAATTTATTT+AGG + chr5.4:69235147-69235166 MS.gene39801:intron 30.0%
TTACTTTGATACCATTGAAG+TGG + chr5.4:69235874-69235893 MS.gene39801:intron 30.0%
TTTAATCACAGATCCATACA+CGG - chr5.4:69235268-69235287 None:intergenic 30.0%
TTTAATCATGGATCCATACA+CGG - chr5.4:69234420-69234439 None:intergenic 30.0%
! ATCAGAGTTTAGAATTGCAA+TGG - chr5.4:69236358-69236377 None:intergenic 30.0%
! CTATTGATTATCCAAATGGA+AGG + chr5.4:69235643-69235662 MS.gene39801:CDS 30.0%
! TCAACATGATTCATAGGTTT+TGG - chr5.4:69233992-69234011 None:intergenic 30.0%
! TCTCCATATCTTTCACATTT+TGG - chr5.4:69236831-69236850 None:intergenic 30.0%
! TCTTGTTATGGTTCTGTAAT+TGG + chr5.4:69235955-69235974 MS.gene39801:intron 30.0%
! TTCTCAAGTTTGTTCATATC+AGG - chr5.4:69237216-69237235 None:intergenic 30.0%
!! ACAGCTTTTATTTCAATCGA+AGG - chr5.4:69234341-69234360 None:intergenic 30.0%
!! ACAGCTTTTATTTCCATTGA+AGG - chr5.4:69235189-69235208 None:intergenic 30.0%
!! CAGCTTTTATTTCAATCGAA+GGG - chr5.4:69234340-69234359 None:intergenic 30.0%
!! CAGCTTTTATTTCCATTGAA+GGG - chr5.4:69235188-69235207 None:intergenic 30.0%
!! CTGTAATTGGTTTGAGTAAT+TGG + chr5.4:69235968-69235987 MS.gene39801:intron 30.0%
!!! CATCATTTTTTGAGTAAACC+GGG + chr5.4:69236060-69236079 MS.gene39801:intron 30.0%
!!! GCATCATTTTTTGAGTAAAC+CGG + chr5.4:69236059-69236078 MS.gene39801:intron 30.0%
!!! TCACCTTGTTTTTGGATATT+TGG - chr5.4:69235669-69235688 None:intergenic 30.0%
AAACAGAAATCAAACGGTTC+TGG + chr5.4:69234437-69234456 MS.gene39801:intron 35.0%
AGGCCAAATATCCAAAAACA+AGG + chr5.4:69235663-69235682 MS.gene39801:CDS 35.0%
CAAAGTGTGATTCCTTCTAA+AGG + chr5.4:69236958-69236977 MS.gene39801:CDS 35.0%
CCACCAAAATGTGAAAGATA+TGG + chr5.4:69236825-69236844 MS.gene39801:CDS 35.0%
GAAACTTAACCAAGAAAACG+AGG - chr5.4:69235763-69235782 None:intergenic 35.0%
GCAACTAAAATCCACTTCAA+TGG - chr5.4:69235888-69235907 None:intergenic 35.0%
GGGATGAAAAAACATGGAAA+GGG + chr5.4:69236721-69236740 MS.gene39801:CDS 35.0%
GTCAATGAAGTTCATTCACA+TGG - chr5.4:69235692-69235711 None:intergenic 35.0%
TAGAAGAAATCAAACGGTTC+TGG + chr5.4:69235288-69235307 MS.gene39801:intron 35.0%
TGTGAAAGATATGGAGAAGA+AGG + chr5.4:69236834-69236853 MS.gene39801:CDS 35.0%
TTGAAGGGGATGAAAAAACA+TGG + chr5.4:69236715-69236734 MS.gene39801:CDS 35.0%
! AATCGGTTCTACAATTCCTT+CGG + chr5.4:69237038-69237057 MS.gene39801:CDS 35.0%
! CCATATCTTTCACATTTTGG+TGG - chr5.4:69236828-69236847 None:intergenic 35.0%
! TTGGCTAGTTCATCTGATTA+AGG + chr5.4:69236017-69236036 MS.gene39801:intron 35.0%
!! ACGGTTCTGGAAATTTCAAT+CGG + chr5.4:69235301-69235320 MS.gene39801:CDS 35.0%
!! AGATTTTAGCCTCGTTTTCT+TGG + chr5.4:69235751-69235770 MS.gene39801:intron 35.0%
!! TTGGTGTTGCTTTATCCAAT+CGG + chr5.4:69237180-69237199 MS.gene39801:CDS 35.0%
!!! GGATAAAGTATTTTTGGGCA+TGG - chr5.4:69236807-69236826 None:intergenic 35.0%
AACAAACGAACCTGAACAGA+AGG - chr5.4:69234911-69234930 None:intergenic 40.0%
AACAATCGAACCTGAACAGA+AGG - chr5.4:69234058-69234077 None:intergenic 40.0%
AAGCGCAACAGTAACACAAA+TGG + chr5.4:69234515-69234534 MS.gene39801:CDS 40.0%
ACACTTTGTAGCTCAACTGA+AGG - chr5.4:69236946-69236965 None:intergenic 40.0%
AGATCCATACACGGAAAATC+AGG - chr5.4:69235259-69235278 None:intergenic 40.0%
CTGAACATGTTTGGCATCAA+TGG - chr5.4:69235592-69235611 None:intergenic 40.0%
CTGAACATGTTTGGCATCAT+TGG - chr5.4:69234645-69234664 None:intergenic 40.0%
GAACAACAACAGGAGAAAAC+TGG + chr5.4:69236306-69236325 MS.gene39801:CDS 40.0%
GAAGGAATTGTAGAACCGAT+TGG - chr5.4:69237039-69237058 None:intergenic 40.0%
GGATTCTCACCATTAGGATA+AGG - chr5.4:69235516-69235535 None:intergenic 40.0%
GGGGATGAAAAAACATGGAA+AGG + chr5.4:69236720-69236739 MS.gene39801:CDS 40.0%
GTCTGTTGCATTCCTTTAGA+AGG - chr5.4:69236973-69236992 None:intergenic 40.0%
TCACCTTGTTCTTGGGTATT+TGG - chr5.4:69234722-69234741 None:intergenic 40.0%
TGGATAAAGCAACACCAACT+GGG - chr5.4:69237178-69237197 None:intergenic 40.0%
TTGGATAAAGCAACACCAAC+TGG - chr5.4:69237179-69237198 None:intergenic 40.0%
! AATGTTTCTGTGCCTAGTGT+TGG + chr5.4:69234013-69234032 MS.gene39801:CDS 40.0%
! ATTTGTGTTACTGTTGCGCT+TGG - chr5.4:69234516-69234535 None:intergenic 40.0%
! GGTGATGGCATCTTATTCTT+CGG - chr5.4:69234473-69234492 None:intergenic 40.0%
! GTCTCATGTTGTTGTTCCAT+AGG - chr5.4:69237102-69237121 None:intergenic 40.0%
! TGGATATTTGGCCTTCCATT+TGG - chr5.4:69235657-69235676 None:intergenic 40.0%
! TTTAAGATGGCAGTGTCTTG+AGG - chr5.4:69237129-69237148 None:intergenic 40.0%
! TTTGCCTGATTTTCCGTGTA+TGG + chr5.4:69234404-69234423 MS.gene39801:intron 40.0%
! TTTGTGTTACTGTTGCGCTT+GGG - chr5.4:69234515-69234534 None:intergenic 40.0%
!! AAGATTCTAGCTTAACCCTG+TGG + chr5.4:69235783-69235802 MS.gene39801:intron 40.0%
!! AAGTGTTGATGTTCCTGTGT+TGG + chr5.4:69233922-69233941 MS.gene39801:CDS 40.0%
!! AATACCCAAAAAAGCACCAC+AGG - chr5.4:69235802-69235821 None:intergenic 40.0%
!! ATACCCAAAAAAGCACCACA+GGG - chr5.4:69235801-69235820 None:intergenic 40.0%
!!! TAACCCTGTGGTGCTTTTTT+GGG + chr5.4:69235795-69235814 MS.gene39801:intron 40.0%
!!! TCACATGGTCACCTTGTTTT+TGG - chr5.4:69235677-69235696 None:intergenic 40.0%
!!! TTAACCCTGTGGTGCTTTTT+TGG + chr5.4:69235794-69235813 MS.gene39801:intron 40.0%
AAAAACATGGAAAGGGACGC+TGG + chr5.4:69236728-69236747 MS.gene39801:CDS 45.0%
AAAGTCATGCCCCAAGGAAA+GGG + chr5.4:69236445-69236464 MS.gene39801:CDS 45.0%
ACCACCCGACTCAATGATAT+CGG - chr5.4:69236334-69236353 None:intergenic 45.0%
ACCTGAACAGAAGGAGCTAT+AGG - chr5.4:69234902-69234921 None:intergenic 45.0%
AGGCCAAATACCCAAGAACA+AGG + chr5.4:69234716-69234735 MS.gene39801:CDS 45.0%
ATTGGCAGCAAGCACAACAT+AGG - chr5.4:69237021-69237040 None:intergenic 45.0%
CAAGGTGACCATGTGAATCA+TGG + chr5.4:69234734-69234753 MS.gene39801:CDS 45.0%
CACATGGTCACCTTGTTCTT+GGG - chr5.4:69234729-69234748 None:intergenic 45.0%
GCATAGCATGGAACAACAAC+AGG + chr5.4:69236296-69236315 MS.gene39801:CDS 45.0%
GCATGGCTAGCAATTTGAGT+TGG - chr5.4:69236790-69236809 None:intergenic 45.0%
GGATCCATACACGGAAAATC+AGG - chr5.4:69234411-69234430 None:intergenic 45.0%
GGATTCTCGCCATTAGGATA+AGG - chr5.4:69234569-69234588 None:intergenic 45.0%
GGCTTAGGATTCTCACCATT+AGG - chr5.4:69235522-69235541 None:intergenic 45.0%
GGTACCCTAGGACGAAAATT+CGG - chr5.4:69235444-69235463 None:intergenic 45.0%
GGTTCAGGACCTTATCCTAA+TGG + chr5.4:69235504-69235523 MS.gene39801:CDS 45.0%
GTGACCATGTGAATCATGGT+CGG + chr5.4:69234738-69234757 MS.gene39801:CDS 45.0%
GTGACGATGCCTTATCCTAA+TGG + chr5.4:69234557-69234576 MS.gene39801:CDS 45.0%
GTTTGAGCATCAGAAAGAGC+CGG - chr5.4:69234821-69234840 None:intergenic 45.0%
GTTTGAGCATGAGAAAGAGC+TGG - chr5.4:69233968-69233987 None:intergenic 45.0%
TATGCAGGAACAGCAATGTG+AGG - chr5.4:69235471-69235490 None:intergenic 45.0%
TCACATGGTCACCTTGTTCT+TGG - chr5.4:69234730-69234749 None:intergenic 45.0%
TCCATAGGAGCAGTGACTAA+AGG - chr5.4:69237087-69237106 None:intergenic 45.0%
TCCTATAGCTCCTTCTGTTC+AGG + chr5.4:69234898-69234917 MS.gene39801:CDS 45.0%
TCCTTTAGTCACTGCTCCTA+TGG + chr5.4:69237083-69237102 MS.gene39801:CDS 45.0%
TGACAACTTGCAAACCCAGT+TGG + chr5.4:69237161-69237180 MS.gene39801:CDS 45.0%
TGAGAAGATGCGCAACTTGT+TGG + chr5.4:69237230-69237249 MS.gene39801:CDS 45.0%
TGTTCCATGCTATGCTCAGA+GGG - chr5.4:69236291-69236310 None:intergenic 45.0%
TTAGGATAAGGTCCTGAACC+AGG - chr5.4:69235504-69235523 None:intergenic 45.0%
TTGGTTCCAACAACCAACAC+AGG - chr5.4:69233938-69233957 None:intergenic 45.0%
TTGTTCCATGCTATGCTCAG+AGG - chr5.4:69236292-69236311 None:intergenic 45.0%
! ATGTTGTGCTTGCTGCCAAT+CGG + chr5.4:69237021-69237040 MS.gene39801:CDS 45.0%
! CATTTGTGTTGTTGCGCTTG+GGG - chr5.4:69235365-69235384 None:intergenic 45.0%
! CCATTTGTGTTGTTGCGCTT+GGG - chr5.4:69235366-69235385 None:intergenic 45.0%
! GCGAGTCGACAAATCTGTTT+TGG + chr5.4:69234298-69234317 MS.gene39801:intron 45.0%
! TCAGGAAGTGTAGAACCGAT+TGG - chr5.4:69237198-69237217 None:intergenic 45.0%
! TGCTCCGAATTTTCGTCCTA+GGG + chr5.4:69235437-69235456 MS.gene39801:CDS 45.0%
! TGGGTATTTGGCCTTCCATT+TGG - chr5.4:69234710-69234729 None:intergenic 45.0%
! TTGCTCCGAATTTTCGTCCT+AGG + chr5.4:69235436-69235455 MS.gene39801:CDS 45.0%
!! AACACAGGAGCATCAACACT+AGG - chr5.4:69234776-69234795 None:intergenic 45.0%
!! GATGTTCCTGTGTTGGTTGT+TGG + chr5.4:69233929-69233948 MS.gene39801:CDS 45.0%
!! TAGTGTTGATGCTCCTGTGT+TGG + chr5.4:69234775-69234794 MS.gene39801:CDS 45.0%
!! TCGTTTTGTTGCTGAACCGA+AGG - chr5.4:69237057-69237076 None:intergenic 45.0%
!! TGGCACCGATATCATTGAGT+CGG + chr5.4:69236326-69236345 MS.gene39801:CDS 45.0%
AAGATGGCAGTGTCTTGAGG+AGG - chr5.4:69237126-69237145 None:intergenic 50.0%
ACCGATATCATTGAGTCGGG+TGG + chr5.4:69236330-69236349 MS.gene39801:CDS 50.0%
ACCTGAACAGAAGGAGCTCT+AGG - chr5.4:69234049-69234068 None:intergenic 50.0%
AGAAAGAGCTGGCGAAGACT+TGG - chr5.4:69233957-69233976 None:intergenic 50.0%
AGATCCCTCTGAGCATAGCA+TGG + chr5.4:69236284-69236303 MS.gene39801:CDS 50.0%
ATCGTCACCACAGGAAAGTG+AGG - chr5.4:69234545-69234564 None:intergenic 50.0%
CAGAAGAAAGTCATGCCCCA+AGG + chr5.4:69236439-69236458 MS.gene39801:CDS 50.0%
CCCAAGCGCAACAACACAAA+TGG + chr5.4:69235363-69235382 MS.gene39801:CDS 50.0%
CGAAAATTCGGAGCAACAGG+CGG - chr5.4:69235432-69235451 None:intergenic 50.0%
CTGTCCAATGCCCTTTCCTT+GGG - chr5.4:69236458-69236477 None:intergenic 50.0%
CTTGGGGCATGACTTTCTTC+TGG - chr5.4:69236441-69236460 None:intergenic 50.0%
GAAAGTCATGCCCCAAGGAA+AGG + chr5.4:69236444-69236463 MS.gene39801:CDS 50.0%
GAATCCTAAGCCTGTATCCC+CGG + chr5.4:69234583-69234602 MS.gene39801:CDS 50.0%
GAGTAAACCGGGTGATGCTA+GGG + chr5.4:69236071-69236090 MS.gene39801:intron 50.0%
GATAAGGTCCTGAACCAGGT+GGG - chr5.4:69235500-69235519 None:intergenic 50.0%
GATGCCGACCATGATTCACA+TGG - chr5.4:69234745-69234764 None:intergenic 50.0%
GGACGAAAATTCGGAGCAAC+AGG - chr5.4:69235435-69235454 None:intergenic 50.0%
GGCTTAGGATTCTCGCCATT+AGG - chr5.4:69234575-69234594 None:intergenic 50.0%
GGCTTTCGATAGCATGGTGA+TGG - chr5.4:69235339-69235358 None:intergenic 50.0%
TATGCTTTCCCACCTGGTTC+AGG + chr5.4:69235489-69235508 MS.gene39801:CDS 50.0%
TCACCATGCTATCGAAAGCC+AGG + chr5.4:69235339-69235358 MS.gene39801:CDS 50.0%
TCCTAGAGCTCCTTCTGTTC+AGG + chr5.4:69234045-69234064 MS.gene39801:CDS 50.0%
TCTGTCCAATGCCCTTTCCT+TGG - chr5.4:69236459-69236478 None:intergenic 50.0%
TCTTAGTCCCTAGCATCACC+CGG - chr5.4:69236081-69236100 None:intergenic 50.0%
TGAGTAAACCGGGTGATGCT+AGG + chr5.4:69236070-69236089 MS.gene39801:intron 50.0%
TGCCAAACATGTTCAGCCTC+CGG + chr5.4:69234649-69234668 MS.gene39801:CDS 50.0%
TGCTATGCTCAGAGGGATCT+TGG - chr5.4:69236284-69236303 None:intergenic 50.0%
TGTCCAATGCCCTTTCCTTG+GGG - chr5.4:69236457-69236476 None:intergenic 50.0%
TGTTGGAACCAAGTCTTCGC+CGG + chr5.4:69233946-69233965 MS.gene39801:CDS 50.0%
TTGGCATCAATGGCATGAGC+AGG - chr5.4:69235582-69235601 None:intergenic 50.0%
TTGGCATCATTGGCATGAGC+AGG - chr5.4:69234635-69234654 None:intergenic 50.0%
! GCCATTTGTGTTGTTGCGCT+TGG - chr5.4:69235367-69235386 None:intergenic 50.0%
!! AAGGAAAGGGCATTGGACAG+AGG + chr5.4:69236458-69236477 MS.gene39801:CDS 50.0%
!! GATGCTCCTGTGTTGGTTGT+TGG + chr5.4:69234782-69234801 MS.gene39801:CDS 50.0%
!! GGCACCGATATCATTGAGTC+GGG + chr5.4:69236327-69236346 MS.gene39801:CDS 50.0%
!! TTCTGTGCCTAGTGTTGGTC+AGG + chr5.4:69234018-69234037 MS.gene39801:CDS 50.0%
AAACCTTGTCCTGCTGCAGC+CGG - chr5.4:69235552-69235571 None:intergenic 55.0%
AAACCTTGTCCTGCTGCTGC+CGG - chr5.4:69234605-69234624 None:intergenic 55.0%
ACAGGCGGCTGCTGATGATA+AGG - chr5.4:69235417-69235436 None:intergenic 55.0%
AGAAAGAGCCGGCGAAGACT+TGG - chr5.4:69234810-69234829 None:intergenic 55.0%
CACCGGAGGCTGAACATGTT+TGG - chr5.4:69234654-69234673 None:intergenic 55.0%
CCTGCATATGCTTTCCCACC+TGG + chr5.4:69235483-69235502 MS.gene39801:CDS 55.0%
GAGGGATCTTGGACTGAAGC+CGG - chr5.4:69236273-69236292 None:intergenic 55.0%
GCAGGAACAGCAATGTGAGG+TGG - chr5.4:69235468-69235487 None:intergenic 55.0%
GCATCAATGGCATGAGCAGG+TGG - chr5.4:69235579-69235598 None:intergenic 55.0%
GCATCATTGGCATGAGCAGG+TGG - chr5.4:69234632-69234651 None:intergenic 55.0%
GCATTCGGATCTCCTTGCAC+CGG - chr5.4:69234671-69234690 None:intergenic 55.0%
GGAACAGCAATGTGAGGTGG+AGG - chr5.4:69235465-69235484 None:intergenic 55.0%
GGAGCAACCTGACCAACACT+AGG - chr5.4:69234028-69234047 None:intergenic 55.0%
GGATAAGGTCCTGAACCAGG+TGG - chr5.4:69235501-69235520 None:intergenic 55.0%
GGATCAGAGGAGGAAAGCAG+AGG + chr5.4:69233882-69233901 MS.gene39801:CDS 55.0%
TGGCACGCTTCACTTTCCTG+TGG + chr5.4:69235383-69235402 MS.gene39801:CDS 55.0%
TGGCATGCCTCACTTTCCTG+TGG + chr5.4:69234535-69234554 MS.gene39801:CDS 55.0%
TTACTGTTGCGCTTGGGACC+TGG - chr5.4:69234509-69234528 None:intergenic 55.0%
TTCACTTTCCTGTGGCGACG+AGG + chr5.4:69235391-69235410 MS.gene39801:CDS 55.0%
! ATGCCCCAAGGAAAGGGCAT+TGG + chr5.4:69236451-69236470 MS.gene39801:CDS 55.0%
! CCAGGTGGGAAAGCATATGC+AGG - chr5.4:69235486-69235505 None:intergenic 55.0%
!! ATGTGAGGTGGAGGTACCCT+AGG - chr5.4:69235456-69235475 None:intergenic 55.0%
!! GGATAAGGCATCGTCACCAC+AGG - chr5.4:69234554-69234573 None:intergenic 55.0%
AACCTTGTCCTGCTGCAGCC+GGG - chr5.4:69235551-69235570 None:intergenic 60.0%
AACCTTGTCCTGCTGCTGCC+GGG - chr5.4:69234604-69234623 None:intergenic 60.0%
CATGTTCAGCCTCCGGTGCA+AGG + chr5.4:69234656-69234675 MS.gene39801:CDS 60.0%
GGCTTTCGATAGCGCGGTGA+TGG - chr5.4:69234488-69234507 None:intergenic 60.0%
TCACCGCGCTATCGAAAGCC+AGG + chr5.4:69234488-69234507 MS.gene39801:CDS 60.0%
TGATAAGGCCTCGTCGCCAC+AGG - chr5.4:69235402-69235421 None:intergenic 60.0%
TTCGGATCTCCTTGCACCGG+AGG - chr5.4:69234668-69234687 None:intergenic 60.0%
! GGACCTGGCTTTCGATAGCG+CGG - chr5.4:69234494-69234513 None:intergenic 60.0%
! GGGCCTGGCTTTCGATAGCA+TGG - chr5.4:69235345-69235364 None:intergenic 60.0%
ACCTTGTCCTGCTGCAGCCG+GGG - chr5.4:69235550-69235569 None:intergenic 65.0%
ACCTTGTCCTGCTGCTGCCG+GGG - chr5.4:69234603-69234622 None:intergenic 65.0%
GCAGCCGGGGATACAGGCTT+AGG - chr5.4:69235537-69235556 None:intergenic 65.0%
GCTGCCGGGGATACAGGCTT+AGG - chr5.4:69234590-69234609 None:intergenic 65.0%
! GTGTTGTTGCGCTTGGGGCC+TGG - chr5.4:69235360-69235379 None:intergenic 65.0%
CCTGCTGCAGCCGGGGATAC+AGG - chr5.4:69235543-69235562 None:intergenic 70.0%
CCTGCTGCTGCCGGGGATAC+AGG - chr5.4:69234596-69234615 None:intergenic 70.0%
CCTGTATCCCCGGCAGCAGC+AGG + chr5.4:69234593-69234612 MS.gene39801:CDS 70.0%
CCTGTATCCCCGGCTGCAGC+AGG + chr5.4:69235540-69235559 MS.gene39801:CDS 70.0%
TCCCCGGCAGCAGCAGGACA+AGG + chr5.4:69234599-69234618 MS.gene39801:CDS 70.0%
TCCCCGGCTGCAGCAGGACA+AGG + chr5.4:69235546-69235565 MS.gene39801:CDS 70.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 69233875 69237266 69233875 ID=MS.gene39801
chr5.4 mRNA 69233875 69237266 69233875 ID=MS.gene39801.t1;Parent=MS.gene39801
chr5.4 exon 69233875 69234066 69233875 ID=MS.gene39801.t1.exon1;Parent=MS.gene39801.t1
chr5.4 CDS 69233875 69234066 69233875 ID=cds.MS.gene39801.t1;Parent=MS.gene39801.t1
chr5.4 exon 69234443 69234919 69234443 ID=MS.gene39801.t1.exon2;Parent=MS.gene39801.t1
chr5.4 CDS 69234443 69234919 69234443 ID=cds.MS.gene39801.t1;Parent=MS.gene39801.t1
chr5.4 exon 69235291 69235684 69235291 ID=MS.gene39801.t1.exon3;Parent=MS.gene39801.t1
chr5.4 CDS 69235291 69235684 69235291 ID=cds.MS.gene39801.t1;Parent=MS.gene39801.t1
chr5.4 exon 69236211 69236490 69236211 ID=MS.gene39801.t1.exon4;Parent=MS.gene39801.t1
chr5.4 CDS 69236211 69236490 69236211 ID=cds.MS.gene39801.t1;Parent=MS.gene39801.t1
chr5.4 exon 69236708 69237266 69236708 ID=MS.gene39801.t1.exon5;Parent=MS.gene39801.t1
chr5.4 CDS 69236708 69237266 69236708 ID=cds.MS.gene39801.t1;Parent=MS.gene39801.t1
Gene Sequence

>MS.gene39801

ATGGTGAGGATCAGAGGAGGAAAGCAGAGGAAAAGTGTTGATGAGAAAAGTGTTGATGTTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCAGCTCTTTCTCATGCTCAAACTCCAAAACCTATGAATCATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTAGAGCTCCTTCTGTTCAGGTTCGATTGTTCTTTACTGTAATTTGATAGCATTGTCGTTTGAGAATGAAATGCAAAAGATCATGTTAGTGTAATGTGATTTTGATGGAGTTTTTTTGTTGAGATAAACATGTTTTGTATTGATCTATTTTTCATGATTTTAGCCATATTATTGCAAGCATAAGAGTTGATTTTGATAGAGTAACAATTAAAATATGACGTGTTAGAATTAAACAACGAGTGAAAAATATGGCGAGTCGACAAATCTGTTTTGGACATATTGTTTTTTATCCCTTCGATTGAAATAAAAGCTGTATTCTACAATATTCTTAACTCTGGGTTTGACTATTTTTTCGTGTTTGCCTGATTTTCCGTGTATGGATCCATGATTAAACAGAAATCAAACGGTTCTGGAAACTTCAATCCGAAGAATAAGATGCCATCACCGCGCTATCGAAAGCCAGGTCCCAAGCGCAACAGTAACACAAATGGCATGCCTCACTTTCCTGTGGTGACGATGCCTTATCCTAATGGCGAGAATCCTAAGCCTGTATCCCCGGCAGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCAATGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTGTTAATTATCCAAATGGAAGGCCAAATACCCAAGAACAAGGTGACCATGTGAATCATGGTCGGCATCATCAAAGACCTAGTGTTGATGCTCCTGTGTTGGTTGTTGGAACCAAGTCTTCGCCGGCTCTTTCTGATGCTCAAACTCCAAAACCTATGAATAATGTTGAGAATGTTTCTGTGCCTAGTGTTGGTCAGGTTGCTCCTATAGCTCCTTCTGTTCAGGTTCGTTTGTTCTTTATTGTAATTTGATAGCATTGTCGTTTGAGAATGAAATGCAAAAGATCATGTTAGAGTAATGTGATTTTGATGGAGTTTTTTTGTTAAGATAAACATGATTTGTATTGATCTATTTTTCATGATTTAGCCATATTATTGCAAGCATAAGAATTGTATTATTGAGTAACAATTAAAATATGACGTGTTAGAATTAAACAACGAGTCAAAAATATTGGAGTCGACAAATTTATTTAGGACATATTGTTTTTTTCCCTTCAATGGAAATAAAAGCTGTATTCTACAATATTCTTAACTCTGGGTTTGACTATTTTTTCGTGTTTGCCTGATTTTCCGTGTATGGATCTGTGATTAAATAGAAGAAATCAAACGGTTCTGGAAATTTCAATCGGATGAATAAGCTGCCATCACCATGCTATCGAAAGCCAGGCCCCAAGCGCAACAACACAAATGGCACGCTTCACTTTCCTGTGGCGACGAGGCCTTATCATCAGCAGCCGCCTGTTGCTCCGAATTTTCGTCCTAGGGTACCTCCACCTCACATTGCTGTTCCTGCATATGCTTTCCCACCTGGTTCAGGACCTTATCCTAATGGTGAGAATCCTAAGCCTGTATCCCCGGCTGCAGCAGGACAAGGTTTTACTCCACCTGCTCATGCCATTGATGCCAAACATGTTCAGCCTCCGGTGCAAGGAGATCCGAATGCTTATGCTATTGATTATCCAAATGGAAGGCCAAATATCCAAAAACAAGGTGACCATGTGAATGAACTTCATTGACTTTATGTAGTGACTTTTTTGTTACTGTTACTGTTTTTGAAGATTTTAGCCTCGTTTTCTTGGTTAAGTTTCAAGATTCTAGCTTAACCCTGTGGTGCTTTTTTGGGTATTGTTTTCCTGATCTTGTCTTTTATATGATTAATATAACTAATCTTCAATATTCTTACTTTGATACCATTGAAGTGGATTTTAGTTGCAACATGATGTTTTACGATGAGTGTTTTATATTGTCAGTATGATATCTTCTTGTTATGGTTCTGTAATTGGTTTGAGTAATTGGCCAAGTAATTTTCTTAACTTTCATGATTGGCTAGTTCATCTGATTAAGGCATAATTGATTTGATTAAGGCATCATTTTTTGAGTAAACCGGGTGATGCTAGGGACTAAGAATTAAGAAGATTTAGCATATTTTTACCATTCAAAAAATATTATGCATGTGGATATAATTCAAATTGGATGAAATTGGTTTTGAATTCTTATAGTTGTATTTTTTGTATAGAAAGCATGGAAGAAAGAAAAAGTATACAATCATCCCTCCTTCAAATTGATTTAAATGAGCCGGCTTCAGTCCAAGATCCCTCTGAGCATAGCATGGAACAACAACAGGAGAAAACTGGCACCGATATCATTGAGTCGGGTGGTGCCATTGCAATTCTAAACTCTGATGATAATAACGTCACAACTCTAAACTCTGACGAAAATAACTTAATTGAAGCTGAGTCAGTACCAGAAGAAAGTCATGCCCCAAGGAAAGGGCATTGGACAGAGGATGAACACAAGTAAGTATGCAGTCTATGTTAATGTTAACCTATGTTTGAAAGTTATTTTTTTTATTTTATTGAGTTAAATATGTGTTTAGTTCTTATTAAATTACAGATTTTAACATCTATAAAATTATTCTGTTTTTTGACAATTGTTTTCATTTTATCTTCTATACAATTGTTTTCATATTATTTAGTTGAATTTGAATATTTCACATTCATTCTCTATATATAGGTTGTTTTTGAAGGGGATGAAAAAACATGGAAAGGGACGCTGGAAAAATATTTCAAAAGAATTTGTGGTGACAAAAACTCCAACTCAAATTGCTAGCCATGCCCAAAAATACTTTATCCACCAAAATGTGAAAGATATGGAGAAGAAGGAGAAAAAGAGAAAAAGGATTCACGACACAACATTAAACAAGAATGACACATTGGTCACTGTCGCTGTTGATCAAGAAGATGAGATTCCTTCAGTTGAGCTACAAAGTGTGATTCCTTCTAAAGGAATGCAACAGACACAAACACAACAGAATGAGATTTCTCCTATGTTGTGCTTGCTGCCAATCGGTTCTACAATTCCTTCGGTTCAGCAACAAAACGAGCTTACTCCTTTAGTCACTGCTCCTATGGAACAACAACATGAGACTCCTCCTCAAGACACTGCCATCTTAAACAACAAGAACAATGACAACTTGCAAACCCAGTTGGTGTTGCTTTATCCAATCGGTTCTACACTTCCTGATATGAACAAACTTGAGAAGATGCGCAACTTGTTGGCAAAAGAACTTTGA
Protein sequence

>MS.gene39801.t1

MVRIRGGKQRKSVDEKSVDVPVLVVGTKSSPALSHAQTPKPMNHVENVSVPSVGQVAPRAPSVQKSNGSGNFNPKNKMPSPRYRKPGPKRNSNTNGMPHFPVVTMPYPNGENPKPVSPAAAGQGFTPPAHANDAKHVQPPVQGDPNAYAVNYPNGRPNTQEQGDHVNHGRHHQRPSVDAPVLVVGTKSSPALSDAQTPKPMNNVENVSVPSVGQVAPIAPSVQKKSNGSGNFNRMNKLPSPCYRKPGPKRNNTNGTLHFPVATRPYHQQPPVAPNFRPRVPPPHIAVPAYAFPPGSGPYPNGENPKPVSPAAAGQGFTPPAHAIDAKHVQPPVQGDPNAYAIDYPNGRPNIQKQESMEERKSIQSSLLQIDLNEPASVQDPSEHSMEQQQEKTGTDIIESGGAIAILNSDDNNVTTLNSDENNLIEAESVPEESHAPRKGHWTEDEHKLFLKGMKKHGKGRWKNISKEFVVTKTPTQIASHAQKYFIHQNVKDMEKKEKKRKRIHDTTLNKNDTLVTVAVDQEDEIPSVELQSVIPSKGMQQTQTQQNEISPMLCLLPIGSTIPSVQQQNELTPLVTAPMEQQHETPPQDTAILNNKNNDNLQTQLVLLYPIGSTLPDMNKLEKMRNLLAKEL