Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39816.t1 | XP_003617086.1 | 94.6 | 625 | 24 | 1 | 1 | 625 | 1 | 615 | 0.00E+00 | 1154.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39816.t1 | O24606 | 69.7 | 511 | 135 | 7 | 2 | 508 | 1 | 495 | 1.2e-197 | 691.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39816.t1 | G7K2Y0 | 94.6 | 625 | 24 | 1 | 1 | 625 | 1 | 615 | 0.0e+00 | 1154.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene39816.t1 | TF | EIL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39816.t1 | MTR_5g087790 | 97.280 | 625 | 7 | 1 | 1 | 625 | 1 | 615 | 0.0 | 1268 |
| MS.gene39816.t1 | MTR_3g078770 | 67.125 | 654 | 156 | 21 | 1 | 623 | 2 | 627 | 0.0 | 802 |
| MS.gene39816.t1 | MTR_2g098470 | 63.961 | 308 | 100 | 4 | 35 | 333 | 24 | 329 | 1.41e-133 | 405 |
| MS.gene39816.t1 | MTR_3g087530 | 62.791 | 258 | 85 | 4 | 46 | 298 | 29 | 280 | 9.79e-110 | 337 |
| MS.gene39816.t1 | MTR_6g460640 | 38.462 | 520 | 282 | 11 | 37 | 550 | 31 | 518 | 6.33e-107 | 337 |
| MS.gene39816.t1 | MTR_6g060600 | 50.000 | 314 | 149 | 4 | 26 | 338 | 20 | 326 | 5.93e-106 | 334 |
| MS.gene39816.t1 | MTR_8g091370 | 60.227 | 264 | 97 | 4 | 39 | 298 | 12 | 271 | 3.95e-105 | 325 |
| MS.gene39816.t1 | MTR_3g010790 | 55.702 | 228 | 100 | 1 | 103 | 330 | 1 | 227 | 2.30e-87 | 281 |
| MS.gene39816.t1 | MTR_1g024420 | 44.231 | 104 | 56 | 1 | 44 | 145 | 5 | 108 | 4.35e-27 | 106 |
| MS.gene39816.t1 | MTR_7g095580 | 43.269 | 104 | 47 | 3 | 92 | 186 | 1 | 101 | 1.69e-18 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39816.t1 | AT3G20770 | 61.035 | 657 | 191 | 13 | 2 | 623 | 1 | 627 | 0.0 | 744 |
| MS.gene39816.t1 | AT2G27050 | 59.594 | 641 | 183 | 20 | 1 | 623 | 1 | 583 | 0.0 | 673 |
| MS.gene39816.t1 | AT1G73730 | 61.682 | 321 | 92 | 6 | 34 | 336 | 11 | 318 | 1.24e-131 | 397 |
| MS.gene39816.t1 | AT1G73730 | 61.682 | 321 | 92 | 6 | 34 | 336 | 23 | 330 | 1.36e-131 | 398 |
| MS.gene39816.t1 | AT5G21120 | 48.086 | 418 | 182 | 9 | 22 | 432 | 24 | 413 | 1.33e-114 | 352 |
| MS.gene39816.t1 | AT5G21120 | 48.086 | 418 | 182 | 9 | 22 | 432 | 24 | 413 | 1.33e-114 | 352 |
| MS.gene39816.t1 | AT5G21120 | 48.086 | 418 | 182 | 9 | 22 | 432 | 31 | 420 | 1.37e-114 | 353 |
| MS.gene39816.t1 | AT5G10120 | 57.818 | 275 | 109 | 4 | 28 | 298 | 4 | 275 | 2.13e-105 | 327 |
| MS.gene39816.t1 | AT5G65100 | 43.427 | 426 | 188 | 11 | 44 | 429 | 33 | 445 | 1.47e-100 | 317 |
Find 189 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGCACAAGGCTTTGTTTA+TGG | 0.190580 | 5.4:-69100327 | MS.gene39816:CDS |
| ACCTCGGTAGCATGAAAATT+AGG | 0.199653 | 5.4:+69099331 | None:intergenic |
| CCACCTTCATTCGATTTAAC+TGG | 0.245739 | 5.4:-69099241 | MS.gene39816:CDS |
| GGTGGAGGGCCTTGATCTTT+AGG | 0.277617 | 5.4:+69099973 | None:intergenic |
| TTTAACTGGGTTTGGAGTTT+CGG | 0.307024 | 5.4:-69099227 | MS.gene39816:CDS |
| AAGCTTTGTGGGAAAATAAC+TGG | 0.313704 | 5.4:+69099304 | None:intergenic |
| GCAGGCTGAACTGTAGAATT+AGG | 0.320347 | 5.4:+69099274 | None:intergenic |
| GATCTTTAGGCAAACCGATC+TGG | 0.332130 | 5.4:+69099986 | None:intergenic |
| AGGCACAAGGCTTTGTTTAT+GGG | 0.334965 | 5.4:-69100326 | MS.gene39816:CDS |
| ATCTGCTTGATACTTGGATA+TGG | 0.336300 | 5.4:+69100206 | None:intergenic |
| GTATGGTTCTTCATGTGATT+TGG | 0.348025 | 5.4:-69098897 | MS.gene39816:CDS |
| ACACACCTTGCAAGAATTAC+AGG | 0.349517 | 5.4:-69100133 | MS.gene39816:CDS |
| TCATCCTCGACCACCGAATC+TGG | 0.353514 | 5.4:+69100561 | None:intergenic |
| TGCGTTATCTGCTTGATACT+TGG | 0.353824 | 5.4:+69100200 | None:intergenic |
| AAGCCAGGTTGCGCTTTCCT+TGG | 0.356760 | 5.4:+69099813 | None:intergenic |
| AACAACAAGATGTTTCAATA+TGG | 0.364077 | 5.4:-69098811 | MS.gene39816:CDS |
| TGATGAGAAGGTTGCTGAAC+TGG | 0.365013 | 5.4:+69099571 | None:intergenic |
| CCTTTCAAGATAGGTCTTCC+AGG | 0.366977 | 5.4:-69099414 | MS.gene39816:CDS |
| TTGCATCCATCATTCTTTCC+TGG | 0.368112 | 5.4:+69100174 | None:intergenic |
| ATCTTTAGGCAAACCGATCT+GGG | 0.368749 | 5.4:+69099987 | None:intergenic |
| TACCTCCACCAGAGGATAAC+GGG | 0.368904 | 5.4:+69099734 | None:intergenic |
| AAGTCATGAGGTTTCTTGTA+TGG | 0.369753 | 5.4:+69099952 | None:intergenic |
| ATTATTGTTGTTGTTGAGGT+TGG | 0.371583 | 5.4:+69098931 | None:intergenic |
| TTGCGAATCTTGGCTATATC+AGG | 0.374628 | 5.4:+69099877 | None:intergenic |
| GTCCTGTTGTTGCTGAATGA+TGG | 0.379003 | 5.4:+69099054 | None:intergenic |
| CCTCCACCATGGTGGCCAAC+CGG | 0.379505 | 5.4:-69100027 | MS.gene39816:CDS |
| ATCAATTCCTTCTTTAGCCT+TGG | 0.381143 | 5.4:+69100452 | None:intergenic |
| TCATTCGATTTAACTGGGTT+TGG | 0.382118 | 5.4:-69099235 | MS.gene39816:CDS |
| TTCAATAACTACACAATTGG+TGG | 0.384657 | 5.4:+69099129 | None:intergenic |
| CCTCACGAGCTTGCGAATCT+TGG | 0.387734 | 5.4:+69099867 | None:intergenic |
| TGGTGGAGGTACTGGTTCTA+TGG | 0.388085 | 5.4:-69099722 | MS.gene39816:CDS |
| GGTTTCAAAAGGAGAGTTCA+TGG | 0.396115 | 5.4:+69098952 | None:intergenic |
| TTATCCTCTGGTGGAGGTAC+TGG | 0.399202 | 5.4:-69099730 | MS.gene39816:CDS |
| AATCTTCATCCATCCAATCT+TGG | 0.400017 | 5.4:-69099619 | MS.gene39816:CDS |
| CATTCTATCCATCCCAAGAT+TGG | 0.409448 | 5.4:+69099606 | None:intergenic |
| TTGTGGTACACTTGGGGAAG+GGG | 0.411806 | 5.4:-69100610 | MS.gene39816:CDS |
| TAGGTTGAACAAAGCTTTGT+GGG | 0.411860 | 5.4:+69099293 | None:intergenic |
| AGAAACAGTCCTGCAGGTTA+TGG | 0.412726 | 5.4:-69099358 | MS.gene39816:CDS |
| CTCGCCTTGCCTTTCAAGAT+AGG | 0.415938 | 5.4:-69099423 | MS.gene39816:CDS |
| CAAGCAGATAACGCAATTCC+AGG | 0.415992 | 5.4:-69100192 | MS.gene39816:CDS |
| TTGATTGATGATGGCAAGCC+AGG | 0.425788 | 5.4:+69099798 | None:intergenic |
| AATAATATGCATCCCATGTA+TGG | 0.430283 | 5.4:-69098914 | MS.gene39816:CDS |
| TCCTGTTGTTGCTGAATGAT+GGG | 0.434795 | 5.4:+69099055 | None:intergenic |
| ATCTTCATCCATCCAATCTT+GGG | 0.436018 | 5.4:-69099618 | MS.gene39816:CDS |
| GGCAAGGCAGTCTCAAGAAC+AGG | 0.441318 | 5.4:-69100421 | MS.gene39816:CDS |
| TGAGGTTTCTTGTATGGTGG+AGG | 0.446444 | 5.4:+69099958 | None:intergenic |
| TTGTTGAGGTTGGTTTCAAA+AGG | 0.451254 | 5.4:+69098941 | None:intergenic |
| GGGAGAGGTTGTCACAAACT+TGG | 0.451465 | 5.4:-69099542 | MS.gene39816:CDS |
| CCTCGGTAGCATGAAAATTA+GGG | 0.456819 | 5.4:+69099332 | None:intergenic |
| CACCTTCATTCGATTTAACT+GGG | 0.462918 | 5.4:-69099240 | MS.gene39816:CDS |
| GGCTATGATACACATGTTAT+AGG | 0.462962 | 5.4:-69099169 | MS.gene39816:CDS |
| TCACAAACTTGGATTTCATT+CGG | 0.464079 | 5.4:-69099531 | MS.gene39816:CDS |
| TGATTATAGTGATGAAGAAA+TGG | 0.464489 | 5.4:-69100541 | MS.gene39816:CDS |
| GGATTCCTCTTGATTGATGA+TGG | 0.464516 | 5.4:+69099789 | None:intergenic |
| TTTGTGGTACACTTGGGGAA+GGG | 0.466355 | 5.4:-69100611 | MS.gene39816:CDS |
| GCCCATCATTCAGCAACAAC+AGG | 0.469177 | 5.4:-69099056 | MS.gene39816:CDS |
| GGCCAACCGGGACTGAAGAC+TGG | 0.469478 | 5.4:-69100014 | MS.gene39816:CDS |
| TTGGATGGATGAAGATTCTC+GGG | 0.470657 | 5.4:+69099625 | None:intergenic |
| GCATATTATTGTTGTTGTTG+AGG | 0.474406 | 5.4:+69098927 | None:intergenic |
| CAGGCAAACCGAGCCAGATT+CGG | 0.479153 | 5.4:-69100574 | MS.gene39816:CDS |
| TCGTGAATGGTGGAAGGATA+AGG | 0.479265 | 5.4:-69100256 | MS.gene39816:CDS |
| GAAAATGATGGAGGTTTGTA+AGG | 0.484505 | 5.4:-69100346 | MS.gene39816:CDS |
| TCCTCAGAGGCGTTTCCCAT+TGG | 0.490597 | 5.4:-69100061 | MS.gene39816:CDS |
| GAGAGTTCATGGCCTTGAAC+CGG | 0.490862 | 5.4:+69098963 | None:intergenic |
| AAGGGGATATTTCTTCTGTC+AGG | 0.493214 | 5.4:-69100593 | MS.gene39816:CDS |
| GAGGATTGCCCTTCTCCAAT+GGG | 0.493994 | 5.4:+69100046 | None:intergenic |
| ACGAAGATTGTCAGATGCTC+CGG | 0.495666 | 5.4:+69100275 | None:intergenic |
| ATTGGATGGATGAAGATTCT+CGG | 0.495807 | 5.4:+69099624 | None:intergenic |
| AATTCCCGAGAAGGGAAAAC+CGG | 0.496336 | 5.4:-69100301 | MS.gene39816:CDS |
| TTGTCAGATGCTCCGGTCAC+CGG | 0.496468 | 5.4:+69100282 | None:intergenic |
| GCAACCTTCTCATCAAATCA+AGG | 0.497251 | 5.4:-69099563 | MS.gene39816:CDS |
| GGGCCACCAGTCTTCAGTCC+CGG | 0.499009 | 5.4:+69100008 | None:intergenic |
| CCGGTTGGCCACCATGGTGG+AGG | 0.499341 | 5.4:+69100027 | None:intergenic |
| AAATCAGTTTGACCGGTTCA+AGG | 0.500225 | 5.4:-69098975 | MS.gene39816:CDS |
| CATCAATCAAGAGGAATCCT+TGG | 0.505411 | 5.4:-69099785 | MS.gene39816:CDS |
| GATGATGATGTTTGAGGACA+TGG | 0.505605 | 5.4:-69100658 | MS.gene39816:CDS |
| TCTTGCAAGGTGTGTGGAGT+TGG | 0.508004 | 5.4:+69100141 | None:intergenic |
| TGCAGTGAGTATGATGTTGA+TGG | 0.508204 | 5.4:-69099688 | MS.gene39816:CDS |
| ATGATCAGCGACCTTATGTC+AGG | 0.516438 | 5.4:-69099190 | MS.gene39816:CDS |
| CGAGCCAGATTCGGTGGTCG+AGG | 0.516671 | 5.4:-69100565 | MS.gene39816:CDS |
| CTCGACCACCGAATCTGGCT+CGG | 0.517344 | 5.4:+69100566 | None:intergenic |
| GAATTACAGGACACAACCTT+GGG | 0.517537 | 5.4:-69100120 | MS.gene39816:CDS |
| TAACGACTTCAACATGATGA+TGG | 0.518203 | 5.4:-69099494 | MS.gene39816:CDS |
| GGAGGATTGCCCTTCTCCAA+TGG | 0.519182 | 5.4:+69100045 | None:intergenic |
| ATCGGTTTGCCTAAAGATCA+AGG | 0.519416 | 5.4:-69099982 | MS.gene39816:CDS |
| ATGAGCTTGAGCGGAGGATG+TGG | 0.520497 | 5.4:-69100512 | MS.gene39816:CDS |
| ATCACATGAAGAACCATACA+TGG | 0.521967 | 5.4:+69098901 | None:intergenic |
| AGAATTACAGGACACAACCT+TGG | 0.524464 | 5.4:-69100121 | MS.gene39816:CDS |
| CTCCACCATGGTGGCCAACC+GGG | 0.526692 | 5.4:-69100026 | MS.gene39816:CDS |
| GTGTATCATAGCCTGACATA+AGG | 0.531266 | 5.4:+69099179 | None:intergenic |
| GAGGCGTTTCCCATTGGAGA+AGG | 0.531537 | 5.4:-69100055 | MS.gene39816:CDS |
| GAGGTTTCTTGTATGGTGGA+GGG | 0.533491 | 5.4:+69099959 | None:intergenic |
| GCAATTCCAGGAAAGAATGA+TGG | 0.536106 | 5.4:-69100180 | MS.gene39816:CDS |
| TCTCCCTTGATTTGATGAGA+AGG | 0.537373 | 5.4:+69099559 | None:intergenic |
| ATTCAATTGATGATTGTCCC+TGG | 0.537403 | 5.4:+69099396 | None:intergenic |
| ATCTTGGGATGGATAGAATG+AGG | 0.537865 | 5.4:-69099603 | MS.gene39816:CDS |
| TAGATCCTCCTTAAAATCAA+AGG | 0.539849 | 5.4:+69098871 | None:intergenic |
| GTACCTCCACCAGAGGATAA+CGG | 0.539881 | 5.4:+69099733 | None:intergenic |
| TCAGTCCCGGTTGGCCACCA+TGG | 0.540302 | 5.4:+69100021 | None:intergenic |
| ACTTGGATTTCATTCGGAAG+AGG | 0.540565 | 5.4:-69099525 | MS.gene39816:CDS |
| TTAGGTTGAACAAAGCTTTG+TGG | 0.541625 | 5.4:+69099292 | None:intergenic |
| GGGTTTGGAGTTTCGGAGGA+CGG | 0.542268 | 5.4:-69099220 | MS.gene39816:CDS |
| GAACAAACCAAGGCTAAAGA+AGG | 0.542936 | 5.4:-69100459 | MS.gene39816:CDS |
| TTTGAATCAAGGAATGGTGA+TGG | 0.544516 | 5.4:-69099023 | MS.gene39816:CDS |
| CAGCCAAGGAAAGCGCAACC+TGG | 0.544615 | 5.4:-69099816 | MS.gene39816:CDS |
| GAAGTACATGCTGAAAATGA+TGG | 0.545558 | 5.4:-69100358 | MS.gene39816:CDS |
| AGCTTGAGCGGAGGATGTGG+AGG | 0.545764 | 5.4:-69100509 | MS.gene39816:CDS |
| GAGAAGGGAAAACCGGTGAC+CGG | 0.547110 | 5.4:-69100294 | MS.gene39816:CDS |
| AGAAACAGAAACAGTCCTGC+AGG | 0.548675 | 5.4:-69099364 | MS.gene39816:CDS |
| GGACTGTTTCTGTTTCTATG+TGG | 0.550312 | 5.4:+69099370 | None:intergenic |
| TGATACTTGGATATGGCAGC+AGG | 0.550770 | 5.4:+69100213 | None:intergenic |
| GAAGGTGGAACTAAACTAGC+AGG | 0.551330 | 5.4:+69099256 | None:intergenic |
| AGGATAAGGTTCGGTTCGAT+AGG | 0.552012 | 5.4:-69100242 | MS.gene39816:CDS |
| TTAGGGTCGCCATAACCTGC+AGG | 0.552645 | 5.4:+69099349 | None:intergenic |
| GCTGAATGATGGGCTGAGAA+AGG | 0.553081 | 5.4:+69099065 | None:intergenic |
| GCTGAATGATGGGCTGAGAA+AGG | 0.553081 | 5.4:+69099098 | None:intergenic |
| TTCTCATCAAATCAAGGGAG+AGG | 0.554659 | 5.4:-69099557 | MS.gene39816:CDS |
| CTTTCAAGATAGGTCTTCCA+GGG | 0.555713 | 5.4:-69099413 | MS.gene39816:CDS |
| TATGGGATAATTCCCGAGAA+GGG | 0.556990 | 5.4:-69100309 | MS.gene39816:CDS |
| GGAAAAGATGATGATGTTTG+AGG | 0.557260 | 5.4:-69100664 | None:intergenic |
| CTATCCATCCCAAGATTGGA+TGG | 0.557944 | 5.4:+69099610 | None:intergenic |
| CTGACAATCTTCGTGAATGG+TGG | 0.558385 | 5.4:-69100266 | MS.gene39816:CDS |
| GGTGTGTGGAGTTGGACCTA+TGG | 0.558968 | 5.4:+69100149 | None:intergenic |
| CCTGGAAGACCTATCTTGAA+AGG | 0.560673 | 5.4:+69099414 | None:intergenic |
| CTACAACTACAAGGAGGAGT+AGG | 0.563021 | 5.4:-69098851 | MS.gene39816:CDS |
| AACCCAGTTAAATCGAATGA+AGG | 0.563631 | 5.4:+69099238 | None:intergenic |
| GCGAGGAAAATCAGTTTGAC+CGG | 0.565875 | 5.4:-69098982 | MS.gene39816:CDS |
| CATCTGACAATCTTCGTGAA+TGG | 0.567255 | 5.4:-69100269 | MS.gene39816:CDS |
| CCAAGATTCGCAAGCTCGTG+AGG | 0.567603 | 5.4:-69099867 | MS.gene39816:CDS |
| TCATGAGGTTTCTTGTATGG+TGG | 0.567990 | 5.4:+69099955 | None:intergenic |
| TGGATAAAGTTCTCGAGCCA+AGG | 0.568027 | 5.4:+69099768 | None:intergenic |
| CACCAGTCTTCAGTCCCGGT+TGG | 0.570122 | 5.4:+69100012 | None:intergenic |
| TTATGGGATAATTCCCGAGA+AGG | 0.572124 | 5.4:-69100310 | MS.gene39816:CDS |
| AATGGTGGAAGGATAAGGTT+CGG | 0.572803 | 5.4:-69100251 | MS.gene39816:CDS |
| AGGCGTTTCCCATTGGAGAA+GGG | 0.573544 | 5.4:-69100054 | MS.gene39816:CDS |
| GGCAGTCTCAAGAACAGGCA+AGG | 0.574300 | 5.4:-69100416 | MS.gene39816:CDS |
| AGAAGGAATTGATGCTGCAA+AGG | 0.574701 | 5.4:-69100442 | MS.gene39816:CDS |
| GCAGTGAGTATGATGTTGAT+GGG | 0.574936 | 5.4:-69099687 | MS.gene39816:CDS |
| GTCCCGGTTGGCCACCATGG+TGG | 0.575585 | 5.4:+69100024 | None:intergenic |
| AACTGGGTTTGGAGTTTCGG+AGG | 0.578482 | 5.4:-69099224 | MS.gene39816:CDS |
| AATGATGGATGCAATTCCAT+AGG | 0.584074 | 5.4:-69100165 | MS.gene39816:CDS |
| CGAGTCAAACTTTGATGTGG+AGG | 0.584361 | 5.4:-69099656 | MS.gene39816:CDS |
| AATGGGAAACGCCTCTGAGG+AGG | 0.586375 | 5.4:+69100063 | None:intergenic |
| TGCTGATAAGAGAGAACCCA+AGG | 0.586902 | 5.4:+69100104 | None:intergenic |
| TAGTGATGAAGAAATGGATG+TGG | 0.587114 | 5.4:-69100535 | MS.gene39816:CDS |
| TGTAATTCTTGCAAGGTGTG+TGG | 0.593213 | 5.4:+69100135 | None:intergenic |
| TGTGTCCTGTAATTCTTGCA+AGG | 0.594212 | 5.4:+69100128 | None:intergenic |
| TCTTGGGATGGATAGAATGA+GGG | 0.594489 | 5.4:-69099602 | MS.gene39816:CDS |
| CAACCTTCTCATCAAATCAA+GGG | 0.596906 | 5.4:-69099562 | MS.gene39816:CDS |
| TCAAGATAAAATGACAGCCA+AGG | 0.597129 | 5.4:-69099830 | MS.gene39816:CDS |
| TCATCCATCCAATCTTGGGA+TGG | 0.598664 | 5.4:-69099614 | MS.gene39816:CDS |
| CCAGTTAAATCGAATGAAGG+TGG | 0.598931 | 5.4:+69099241 | None:intergenic |
| CTTGGGATGGATAGAATGAG+GGG | 0.601634 | 5.4:-69099601 | MS.gene39816:CDS |
| CAATCTTCGTGAATGGTGGA+AGG | 0.601878 | 5.4:-69100262 | MS.gene39816:CDS |
| AAGGAGGATCTACAACTACA+AGG | 0.608788 | 5.4:-69098860 | MS.gene39816:CDS |
| AAGGTTCGGTTCGATAGGAA+TGG | 0.610184 | 5.4:-69100237 | MS.gene39816:CDS |
| GCAAACCGAGCCAGATTCGG+TGG | 0.610299 | 5.4:-69100571 | MS.gene39816:CDS |
| ACTACAAGGAGGAGTAGGAA+TGG | 0.611304 | 5.4:-69098846 | MS.gene39816:CDS |
| AAGATGTCAAGAGCTCAAGA+TGG | 0.612194 | 5.4:-69100387 | MS.gene39816:CDS |
| GCTTCGCTGTAAGCGCATTG+AGG | 0.613195 | 5.4:+69099445 | None:intergenic |
| CGGCGAGTCAAACTTTGATG+TGG | 0.614982 | 5.4:-69099659 | MS.gene39816:CDS |
| TCCAATGGGAAACGCCTCTG+AGG | 0.618975 | 5.4:+69100060 | None:intergenic |
| GAAGACTGGTGGCCCCAGAT+CGG | 0.620125 | 5.4:-69100000 | MS.gene39816:CDS |
| AAGACCTATCTTGAAAGGCA+AGG | 0.620631 | 5.4:+69099419 | None:intergenic |
| TATGATGTTGATGGGGCTGA+CGG | 0.622733 | 5.4:-69099679 | MS.gene39816:CDS |
| GCTTGCCATCATCAATCAAG+AGG | 0.624863 | 5.4:-69099794 | MS.gene39816:CDS |
| GAATTGATGCTGCAAAGGCA+AGG | 0.624873 | 5.4:-69100437 | MS.gene39816:CDS |
| GAATCAAGGAATGGTGATGG+AGG | 0.630262 | 5.4:-69099020 | MS.gene39816:CDS |
| ATGGAGGTTTGTAAGGCACA+AGG | 0.638043 | 5.4:-69100339 | MS.gene39816:CDS |
| GAAAATAACTGGCTTAACCT+CGG | 0.643010 | 5.4:+69099315 | None:intergenic |
| GCTTGAGCGGAGGATGTGGA+GGG | 0.653404 | 5.4:-69100508 | MS.gene39816:CDS |
| AGTCTCAAGAACAGGCAAGG+AGG | 0.658159 | 5.4:-69100413 | MS.gene39816:CDS |
| TGGATGTGGATGAGCTTGAG+CGG | 0.660750 | 5.4:-69100521 | MS.gene39816:CDS |
| CAACCGGGACTGAAGACTGG+TGG | 0.661902 | 5.4:-69100011 | MS.gene39816:CDS |
| TCTTTAGGCAAACCGATCTG+GGG | 0.665997 | 5.4:+69099988 | None:intergenic |
| ATGATGATGTTTGAGGACAT+GGG | 0.668420 | 5.4:-69100657 | MS.gene39816:CDS |
| AGCACTGCGATCCTCCTCAG+AGG | 0.670631 | 5.4:-69100074 | MS.gene39816:CDS |
| ACCTCCACCAGAGGATAACG+GGG | 0.673590 | 5.4:+69099735 | None:intergenic |
| TCACATGAAGAACCATACAT+GGG | 0.685805 | 5.4:+69098902 | None:intergenic |
| GCGACTGAAAGAACAAACCA+AGG | 0.688069 | 5.4:-69100469 | MS.gene39816:CDS |
| CAGTGAGTATGATGTTGATG+GGG | 0.693933 | 5.4:-69099686 | MS.gene39816:CDS |
| AGGGCAATCCTCCACCATGG+TGG | 0.709968 | 5.4:-69100035 | MS.gene39816:CDS |
| ATGTGGATGAGCTTGAGCGG+AGG | 0.710465 | 5.4:-69100518 | MS.gene39816:CDS |
| AGAAGGGCAATCCTCCACCA+TGG | 0.713618 | 5.4:-69100038 | MS.gene39816:CDS |
| AGAACCAGTACCTCCACCAG+AGG | 0.719646 | 5.4:+69099726 | None:intergenic |
| GTACATGCTGAAAATGATGG+AGG | 0.724912 | 5.4:-69100355 | MS.gene39816:CDS |
| CTCCACCAGAGGATAACGGG+GGG | 0.729921 | 5.4:+69099737 | None:intergenic |
| CCTCCACCAGAGGATAACGG+GGG | 0.744768 | 5.4:+69099736 | None:intergenic |
| GAGGATCTACAACTACAAGG+AGG | 0.776973 | 5.4:-69098857 | MS.gene39816:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTCAATAACTACACAAT+TGG | + | chr5.4:69100336-69100355 | None:intergenic | 20.0% |
| ! | AACAACAAGATGTTTCAATA+TGG | - | chr5.4:69100648-69100667 | MS.gene39816:CDS | 25.0% |
| ! | TGATTATAGTGATGAAGAAA+TGG | - | chr5.4:69098918-69098937 | MS.gene39816:CDS | 25.0% |
| !! | GACAATTTCTTTTTGAATCA+AGG | - | chr5.4:69100425-69100444 | MS.gene39816:CDS | 25.0% |
| !! | TTTCTTTTTGAATCAAGGAA+TGG | - | chr5.4:69100430-69100449 | MS.gene39816:CDS | 25.0% |
| AATAATATGCATCCCATGTA+TGG | - | chr5.4:69100545-69100564 | MS.gene39816:CDS | 30.0% | |
| TAGATCCTCCTTAAAATCAA+AGG | + | chr5.4:69100591-69100610 | None:intergenic | 30.0% | |
| TCACAAACTTGGATTTCATT+CGG | - | chr5.4:69099928-69099947 | MS.gene39816:CDS | 30.0% | |
| TTCAATAACTACACAATTGG+TGG | + | chr5.4:69100333-69100352 | None:intergenic | 30.0% | |
| ! | ATTATTGTTGTTGTTGAGGT+TGG | + | chr5.4:69100531-69100550 | None:intergenic | 30.0% |
| ! | GCATATTATTGTTGTTGTTG+AGG | + | chr5.4:69100535-69100554 | None:intergenic | 30.0% |
| ! | TTGAAAAAAGCATGGAAAGT+CGG | - | chr5.4:69099528-69099547 | MS.gene39816:CDS | 30.0% |
| !! | TTTGGCATCCTTTGATTTTA+AGG | - | chr5.4:69100580-69100599 | MS.gene39816:CDS | 30.0% |
| !!! | CATTTTATCTTGAAGGCATT+TGG | + | chr5.4:69099622-69099641 | None:intergenic | 30.0% |
| !!! | TTTTGTTGTTGCTGAATGAT+GGG | + | chr5.4:69100374-69100393 | None:intergenic | 30.0% |
| AACCCAGTTAAATCGAATGA+AGG | + | chr5.4:69100224-69100243 | None:intergenic | 35.0% | |
| AAGTCATGAGGTTTCTTGTA+TGG | + | chr5.4:69099510-69099529 | None:intergenic | 35.0% | |
| AATCTTCATCCATCCAATCT+TGG | - | chr5.4:69099840-69099859 | MS.gene39816:CDS | 35.0% | |
| ATCAATTCCTTCTTTAGCCT+TGG | + | chr5.4:69099010-69099029 | None:intergenic | 35.0% | |
| ATCACATGAAGAACCATACA+TGG | + | chr5.4:69100561-69100580 | None:intergenic | 35.0% | |
| ATCTGCTTGATACTTGGATA+TGG | + | chr5.4:69099256-69099275 | None:intergenic | 35.0% | |
| ATCTTCATCCATCCAATCTT+GGG | - | chr5.4:69099841-69099860 | MS.gene39816:CDS | 35.0% | |
| ATTGGATGGATGAAGATTCT+CGG | + | chr5.4:69099838-69099857 | None:intergenic | 35.0% | |
| CAACCTTCTCATCAAATCAA+GGG | - | chr5.4:69099897-69099916 | MS.gene39816:CDS | 35.0% | |
| CACCTTCATTCGATTTAACT+GGG | - | chr5.4:69100219-69100238 | MS.gene39816:CDS | 35.0% | |
| CTCATGACTTGAAAAAAGCA+TGG | - | chr5.4:69099520-69099539 | MS.gene39816:CDS | 35.0% | |
| GAAGTACATGCTGAAAATGA+TGG | - | chr5.4:69099101-69099120 | MS.gene39816:CDS | 35.0% | |
| GGCTATGATACACATGTTAT+AGG | - | chr5.4:69100290-69100309 | MS.gene39816:CDS | 35.0% | |
| GTATGGTTCTTCATGTGATT+TGG | - | chr5.4:69100562-69100581 | MS.gene39816:CDS | 35.0% | |
| TAACGACTTCAACATGATGA+TGG | - | chr5.4:69099965-69099984 | MS.gene39816:CDS | 35.0% | |
| TAGTGATGAAGAAATGGATG+TGG | - | chr5.4:69098924-69098943 | MS.gene39816:CDS | 35.0% | |
| TCAAGATAAAATGACAGCCA+AGG | - | chr5.4:69099629-69099648 | MS.gene39816:CDS | 35.0% | |
| TCACATGAAGAACCATACAT+GGG | + | chr5.4:69100560-69100579 | None:intergenic | 35.0% | |
| TCATTCGATTTAACTGGGTT+TGG | - | chr5.4:69100224-69100243 | MS.gene39816:CDS | 35.0% | |
| TTTGAATCAAGGAATGGTGA+TGG | - | chr5.4:69100436-69100455 | MS.gene39816:CDS | 35.0% | |
| ! | AAGCTTTGTGGGAAAATAAC+TGG | + | chr5.4:69100158-69100177 | None:intergenic | 35.0% |
| ! | ATGATGATGTTTGAGGACAT+GGG | - | chr5.4:69098802-69098821 | MS.gene39816:CDS | 35.0% |
| ! | ATGTGTTTTGTGGTACACTT+GGG | - | chr5.4:69098842-69098861 | MS.gene39816:CDS | 35.0% |
| ! | ATTCAATTGATGATTGTCCC+TGG | + | chr5.4:69100066-69100085 | None:intergenic | 35.0% |
| ! | GAAAATAACTGGCTTAACCT+CGG | + | chr5.4:69100147-69100166 | None:intergenic | 35.0% |
| ! | GAAAATGATGGAGGTTTGTA+AGG | - | chr5.4:69099113-69099132 | MS.gene39816:CDS | 35.0% |
| ! | TAGGTTGAACAAAGCTTTGT+GGG | + | chr5.4:69100169-69100188 | None:intergenic | 35.0% |
| ! | TTTAACTGGGTTTGGAGTTT+CGG | - | chr5.4:69100232-69100251 | MS.gene39816:CDS | 35.0% |
| !! | AATGATGGATGCAATTCCAT+AGG | - | chr5.4:69099294-69099313 | MS.gene39816:CDS | 35.0% |
| !! | TTAGGTTGAACAAAGCTTTG+TGG | + | chr5.4:69100170-69100189 | None:intergenic | 35.0% |
| !! | TTGTTGAGGTTGGTTTCAAA+AGG | + | chr5.4:69100521-69100540 | None:intergenic | 35.0% |
| !!! | CATGCTTTTTTCAAGTCATG+AGG | + | chr5.4:69099522-69099541 | None:intergenic | 35.0% |
| !!! | GTTTTGTTGTTGCTGAATGA+TGG | + | chr5.4:69100375-69100394 | None:intergenic | 35.0% |
| !!! | TGGCTGTCATTTTATCTTGA+AGG | + | chr5.4:69099629-69099648 | None:intergenic | 35.0% |
| AAGACCTATCTTGAAAGGCA+AGG | + | chr5.4:69100043-69100062 | None:intergenic | 40.0% | |
| AAGATGTCAAGAGCTCAAGA+TGG | - | chr5.4:69099072-69099091 | MS.gene39816:CDS | 40.0% | |
| AAGGAGGATCTACAACTACA+AGG | - | chr5.4:69100599-69100618 | MS.gene39816:CDS | 40.0% | |
| AAGGGGATATTTCTTCTGTC+AGG | - | chr5.4:69098866-69098885 | MS.gene39816:CDS | 40.0% | |
| ACACACCTTGCAAGAATTAC+AGG | - | chr5.4:69099326-69099345 | MS.gene39816:CDS | 40.0% | |
| ACCTCGGTAGCATGAAAATT+AGG | + | chr5.4:69100131-69100150 | None:intergenic | 40.0% | |
| ACTTGGATTTCATTCGGAAG+AGG | - | chr5.4:69099934-69099953 | MS.gene39816:CDS | 40.0% | |
| AGAAGGAATTGATGCTGCAA+AGG | - | chr5.4:69099017-69099036 | MS.gene39816:CDS | 40.0% | |
| AGAATTACAGGACACAACCT+TGG | - | chr5.4:69099338-69099357 | MS.gene39816:CDS | 40.0% | |
| ATCTTGGGATGGATAGAATG+AGG | - | chr5.4:69099856-69099875 | MS.gene39816:CDS | 40.0% | |
| ATCTTTAGGCAAACCGATCT+GGG | + | chr5.4:69099475-69099494 | None:intergenic | 40.0% | |
| CAGTGAGTATGATGTTGATG+GGG | - | chr5.4:69099773-69099792 | MS.gene39816:CDS | 40.0% | |
| CATCAATCAAGAGGAATCCT+TGG | - | chr5.4:69099674-69099693 | MS.gene39816:CDS | 40.0% | |
| CATCTGACAATCTTCGTGAA+TGG | - | chr5.4:69099190-69099209 | MS.gene39816:CDS | 40.0% | |
| CATTCTATCCATCCCAAGAT+TGG | + | chr5.4:69099856-69099875 | None:intergenic | 40.0% | |
| CCACCTTCATTCGATTTAAC+TGG | - | chr5.4:69100218-69100237 | MS.gene39816:CDS | 40.0% | |
| CCAGTTAAATCGAATGAAGG+TGG | + | chr5.4:69100221-69100240 | None:intergenic | 40.0% | |
| CCTCGGTAGCATGAAAATTA+GGG | + | chr5.4:69100130-69100149 | None:intergenic | 40.0% | |
| CTTTCAAGATAGGTCTTCCA+GGG | - | chr5.4:69100046-69100065 | MS.gene39816:CDS | 40.0% | |
| GAACAAACCAAGGCTAAAGA+AGG | - | chr5.4:69099000-69099019 | MS.gene39816:CDS | 40.0% | |
| GAATTACAGGACACAACCTT+GGG | - | chr5.4:69099339-69099358 | MS.gene39816:CDS | 40.0% | |
| GCAACCTTCTCATCAAATCA+AGG | - | chr5.4:69099896-69099915 | MS.gene39816:CDS | 40.0% | |
| GCAATTCCAGGAAAGAATGA+TGG | - | chr5.4:69099279-69099298 | MS.gene39816:CDS | 40.0% | |
| GCAGTGAGTATGATGTTGAT+GGG | - | chr5.4:69099772-69099791 | MS.gene39816:CDS | 40.0% | |
| GGATTCCTCTTGATTGATGA+TGG | + | chr5.4:69099673-69099692 | None:intergenic | 40.0% | |
| GGTTTCAAAAGGAGAGTTCA+TGG | + | chr5.4:69100510-69100529 | None:intergenic | 40.0% | |
| GTACATGCTGAAAATGATGG+AGG | - | chr5.4:69099104-69099123 | MS.gene39816:CDS | 40.0% | |
| GTGTATCATAGCCTGACATA+AGG | + | chr5.4:69100283-69100302 | None:intergenic | 40.0% | |
| TATGGGATAATTCCCGAGAA+GGG | - | chr5.4:69099150-69099169 | MS.gene39816:CDS | 40.0% | |
| TCATGAGGTTTCTTGTATGG+TGG | + | chr5.4:69099507-69099526 | None:intergenic | 40.0% | |
| TCCTGTTGTTGCTGAATGAT+GGG | + | chr5.4:69100407-69100426 | None:intergenic | 40.0% | |
| TCTTGGGATGGATAGAATGA+GGG | - | chr5.4:69099857-69099876 | MS.gene39816:CDS | 40.0% | |
| TGCAGTGAGTATGATGTTGA+TGG | - | chr5.4:69099771-69099790 | MS.gene39816:CDS | 40.0% | |
| TGCGTTATCTGCTTGATACT+TGG | + | chr5.4:69099262-69099281 | None:intergenic | 40.0% | |
| TGTAATTCTTGCAAGGTGTG+TGG | + | chr5.4:69099327-69099346 | None:intergenic | 40.0% | |
| TGTGTCCTGTAATTCTTGCA+AGG | + | chr5.4:69099334-69099353 | None:intergenic | 40.0% | |
| TTATGGGATAATTCCCGAGA+AGG | - | chr5.4:69099149-69099168 | MS.gene39816:CDS | 40.0% | |
| TTCTCATCAAATCAAGGGAG+AGG | - | chr5.4:69099902-69099921 | MS.gene39816:CDS | 40.0% | |
| TTGCATCCATCATTCTTTCC+TGG | + | chr5.4:69099288-69099307 | None:intergenic | 40.0% | |
| TTGCGAATCTTGGCTATATC+AGG | + | chr5.4:69099585-69099604 | None:intergenic | 40.0% | |
| TTGGATGGATGAAGATTCTC+GGG | + | chr5.4:69099837-69099856 | None:intergenic | 40.0% | |
| ! | AAATCAGTTTGACCGGTTCA+AGG | - | chr5.4:69100484-69100503 | MS.gene39816:CDS | 40.0% |
| ! | AATGGTGGAAGGATAAGGTT+CGG | - | chr5.4:69099208-69099227 | MS.gene39816:CDS | 40.0% |
| ! | CATGGGATTTTGTGGTGATT+TGG | - | chr5.4:69098819-69098838 | MS.gene39816:CDS | 40.0% |
| ! | GATGAAGATTCTCGGGTTTT+CGG | + | chr5.4:69099830-69099849 | None:intergenic | 40.0% |
| ! | GATGTGTTTTGTGGTACACT+TGG | - | chr5.4:69098841-69098860 | MS.gene39816:CDS | 40.0% |
| ! | TAAGGTCGCTGATCATTTTC+TGG | + | chr5.4:69100265-69100284 | None:intergenic | 40.0% |
| ! | TCTCCCTTGATTTGATGAGA+AGG | + | chr5.4:69099903-69099922 | None:intergenic | 40.0% |
| ! | TGCTCGCATGTGTACATTTT+CGG | + | chr5.4:69099993-69100012 | None:intergenic | 40.0% |
| ! | TGTGTTTTGTGGTACACTTG+GGG | - | chr5.4:69098843-69098862 | MS.gene39816:CDS | 40.0% |
| ! | TTTGAGGACATGGGATTTTG+TGG | - | chr5.4:69098811-69098830 | MS.gene39816:CDS | 40.0% |
| !! | AAGGCACAAGGCTTTGTTTA+TGG | - | chr5.4:69099132-69099151 | MS.gene39816:CDS | 40.0% |
| !! | AGGCACAAGGCTTTGTTTAT+GGG | - | chr5.4:69099133-69099152 | MS.gene39816:CDS | 40.0% |
| !! | ATCGGTTTGCCTAAAGATCA+AGG | - | chr5.4:69099477-69099496 | MS.gene39816:CDS | 40.0% |
| !! | GGACTGTTTCTGTTTCTATG+TGG | + | chr5.4:69100092-69100111 | None:intergenic | 40.0% |
| !! | GGCATCCTTTGATTTTAAGG+AGG | - | chr5.4:69100583-69100602 | MS.gene39816:CDS | 40.0% |
| !! | GGTGATTTGGATGTGTTTTG+TGG | - | chr5.4:69098832-69098851 | MS.gene39816:CDS | 40.0% |
| AATTCCCGAGAAGGGAAAAC+CGG | - | chr5.4:69099158-69099177 | MS.gene39816:CDS | 45.0% | |
| ACGAAGATTGTCAGATGCTC+CGG | + | chr5.4:69099187-69099206 | None:intergenic | 45.0% | |
| ACTACAAGGAGGAGTAGGAA+TGG | - | chr5.4:69100613-69100632 | MS.gene39816:CDS | 45.0% | |
| AGAAACAGAAACAGTCCTGC+AGG | - | chr5.4:69100095-69100114 | MS.gene39816:CDS | 45.0% | |
| AGAAACAGTCCTGCAGGTTA+TGG | - | chr5.4:69100101-69100120 | MS.gene39816:CDS | 45.0% | |
| ATGATCAGCGACCTTATGTC+AGG | - | chr5.4:69100269-69100288 | MS.gene39816:CDS | 45.0% | |
| ATGGAGGTTTGTAAGGCACA+AGG | - | chr5.4:69099120-69099139 | MS.gene39816:CDS | 45.0% | |
| CAAGCAGATAACGCAATTCC+AGG | - | chr5.4:69099267-69099286 | MS.gene39816:CDS | 45.0% | |
| CCTGGAAGACCTATCTTGAA+AGG | + | chr5.4:69100048-69100067 | None:intergenic | 45.0% | |
| CCTTTCAAGATAGGTCTTCC+AGG | - | chr5.4:69100045-69100064 | MS.gene39816:CDS | 45.0% | |
| CGAGTCAAACTTTGATGTGG+AGG | - | chr5.4:69099803-69099822 | MS.gene39816:CDS | 45.0% | |
| CTACAACTACAAGGAGGAGT+AGG | - | chr5.4:69100608-69100627 | MS.gene39816:CDS | 45.0% | |
| CTATCCATCCCAAGATTGGA+TGG | + | chr5.4:69099852-69099871 | None:intergenic | 45.0% | |
| CTGACAATCTTCGTGAATGG+TGG | - | chr5.4:69099193-69099212 | MS.gene39816:CDS | 45.0% | |
| CTTGGGATGGATAGAATGAG+GGG | - | chr5.4:69099858-69099877 | MS.gene39816:CDS | 45.0% | |
| GAAGGTGGAACTAAACTAGC+AGG | + | chr5.4:69100206-69100225 | None:intergenic | 45.0% | |
| GAATTGATGCTGCAAAGGCA+AGG | - | chr5.4:69099022-69099041 | MS.gene39816:CDS | 45.0% | |
| GAGGATCTACAACTACAAGG+AGG | - | chr5.4:69100602-69100621 | MS.gene39816:CDS | 45.0% | |
| GATCTTTAGGCAAACCGATC+TGG | + | chr5.4:69099476-69099495 | None:intergenic | 45.0% | |
| GCAGGCTGAACTGTAGAATT+AGG | + | chr5.4:69100188-69100207 | None:intergenic | 45.0% | |
| GCGACTGAAAGAACAAACCA+AGG | - | chr5.4:69098990-69099009 | MS.gene39816:CDS | 45.0% | |
| GCGAGGAAAATCAGTTTGAC+CGG | - | chr5.4:69100477-69100496 | MS.gene39816:CDS | 45.0% | |
| GCTTGCCATCATCAATCAAG+AGG | - | chr5.4:69099665-69099684 | MS.gene39816:CDS | 45.0% | |
| GTCCTGTTGTTGCTGAATGA+TGG | + | chr5.4:69100408-69100427 | None:intergenic | 45.0% | |
| TCATCCATCCAATCTTGGGA+TGG | - | chr5.4:69099845-69099864 | MS.gene39816:CDS | 45.0% | |
| TCTTTAGGCAAACCGATCTG+GGG | + | chr5.4:69099474-69099493 | None:intergenic | 45.0% | |
| TGAGGTTTCTTGTATGGTGG+AGG | + | chr5.4:69099504-69099523 | None:intergenic | 45.0% | |
| TGATACTTGGATATGGCAGC+AGG | + | chr5.4:69099249-69099268 | None:intergenic | 45.0% | |
| TGATGAGAAGGTTGCTGAAC+TGG | + | chr5.4:69099891-69099910 | None:intergenic | 45.0% | |
| TGCTGATAAGAGAGAACCCA+AGG | + | chr5.4:69099358-69099377 | None:intergenic | 45.0% | |
| TGGATAAAGTTCTCGAGCCA+AGG | + | chr5.4:69099694-69099713 | None:intergenic | 45.0% | |
| TTTGTGGTACACTTGGGGAA+GGG | - | chr5.4:69098848-69098867 | MS.gene39816:CDS | 45.0% | |
| ! | AAGGTTCGGTTCGATAGGAA+TGG | - | chr5.4:69099222-69099241 | MS.gene39816:CDS | 45.0% |
| ! | AGGATAAGGTTCGGTTCGAT+AGG | - | chr5.4:69099217-69099236 | MS.gene39816:CDS | 45.0% |
| ! | CAATCTTCGTGAATGGTGGA+AGG | - | chr5.4:69099197-69099216 | MS.gene39816:CDS | 45.0% |
| ! | CCCTAATTTTCATGCTACCG+AGG | - | chr5.4:69100127-69100146 | MS.gene39816:CDS | 45.0% |
| ! | GAGGTTTCTTGTATGGTGGA+GGG | + | chr5.4:69099503-69099522 | None:intergenic | 45.0% |
| ! | TATGATGTTGATGGGGCTGA+CGG | - | chr5.4:69099780-69099799 | MS.gene39816:CDS | 45.0% |
| ! | TCGTGAATGGTGGAAGGATA+AGG | - | chr5.4:69099203-69099222 | MS.gene39816:CDS | 45.0% |
| ! | TTTTGTGGTACACTTGGGGA+AGG | - | chr5.4:69098847-69098866 | MS.gene39816:CDS | 45.0% |
| !! | GAATCAAGGAATGGTGATGG+AGG | - | chr5.4:69100439-69100458 | MS.gene39816:CDS | 45.0% |
| !! | TTGATTGATGATGGCAAGCC+AGG | + | chr5.4:69099664-69099683 | None:intergenic | 45.0% |
| !!! | GGCAAACTTTTTTACTCGCG+AGG | - | chr5.4:69100460-69100479 | MS.gene39816:CDS | 45.0% |
| AGGCGTTTCCCATTGGAGAA+GGG | - | chr5.4:69099405-69099424 | MS.gene39816:CDS | 50.0% | |
| AGTCTCAAGAACAGGCAAGG+AGG | - | chr5.4:69099046-69099065 | MS.gene39816:CDS | 50.0% | |
| CGGCGAGTCAAACTTTGATG+TGG | - | chr5.4:69099800-69099819 | MS.gene39816:CDS | 50.0% | |
| CTCGCCTTGCCTTTCAAGAT+AGG | - | chr5.4:69100036-69100055 | MS.gene39816:CDS | 50.0% | |
| GAGGATTGCCCTTCTCCAAT+GGG | + | chr5.4:69099416-69099435 | None:intergenic | 50.0% | |
| GCCCATCATTCAGCAACAAC+AGG | - | chr5.4:69100370-69100389 | MS.gene39816:CDS | 50.0% | |
| GGGAGAGGTTGTCACAAACT+TGG | - | chr5.4:69099917-69099936 | MS.gene39816:CDS | 50.0% | |
| GTACCTCCACCAGAGGATAA+CGG | + | chr5.4:69099729-69099748 | None:intergenic | 50.0% | |
| TACCTCCACCAGAGGATAAC+GGG | + | chr5.4:69099728-69099747 | None:intergenic | 50.0% | |
| TCTTGCAAGGTGTGTGGAGT+TGG | + | chr5.4:69099321-69099340 | None:intergenic | 50.0% | |
| TGGATGTGGATGAGCTTGAG+CGG | - | chr5.4:69098938-69098957 | MS.gene39816:CDS | 50.0% | |
| TTGTGGTACACTTGGGGAAG+GGG | - | chr5.4:69098849-69098868 | MS.gene39816:CDS | 50.0% | |
| ! | AACTGGGTTTGGAGTTTCGG+AGG | - | chr5.4:69100235-69100254 | MS.gene39816:CDS | 50.0% |
| ! | GAGAGTTCATGGCCTTGAAC+CGG | + | chr5.4:69100499-69100518 | None:intergenic | 50.0% |
| ! | TTATCCTCTGGTGGAGGTAC+TGG | - | chr5.4:69099729-69099748 | MS.gene39816:CDS | 50.0% |
| !! | GATAACGGGGGGCAATAATC+TGG | + | chr5.4:69099714-69099733 | None:intergenic | 50.0% |
| !! | GCTGAATGATGGGCTGAGAA+AGG | + | chr5.4:69100364-69100383 | None:intergenic | 50.0% |
| !! | TGGTGGAGGTACTGGTTCTA+TGG | - | chr5.4:69099737-69099756 | MS.gene39816:CDS | 50.0% |
| AAGCCAGGTTGCGCTTTCCT+TGG | + | chr5.4:69099649-69099668 | None:intergenic | 55.0% | |
| ACCTCCACCAGAGGATAACG+GGG | + | chr5.4:69099727-69099746 | None:intergenic | 55.0% | |
| AGAACCAGTACCTCCACCAG+AGG | + | chr5.4:69099736-69099755 | None:intergenic | 55.0% | |
| AGAAGGGCAATCCTCCACCA+TGG | - | chr5.4:69099421-69099440 | MS.gene39816:CDS | 55.0% | |
| ATGAGCTTGAGCGGAGGATG+TGG | - | chr5.4:69098947-69098966 | MS.gene39816:CDS | 55.0% | |
| ATGTGGATGAGCTTGAGCGG+AGG | - | chr5.4:69098941-69098960 | MS.gene39816:CDS | 55.0% | |
| CAGGCAAACCGAGCCAGATT+CGG | - | chr5.4:69098885-69098904 | MS.gene39816:CDS | 55.0% | |
| CCAAGATTCGCAAGCTCGTG+AGG | - | chr5.4:69099592-69099611 | MS.gene39816:CDS | 55.0% | |
| CCTCACGAGCTTGCGAATCT+TGG | + | chr5.4:69099595-69099614 | None:intergenic | 55.0% | |
| GAGAAGGGAAAACCGGTGAC+CGG | - | chr5.4:69099165-69099184 | MS.gene39816:CDS | 55.0% | |
| GCTTCGCTGTAAGCGCATTG+AGG | + | chr5.4:69100017-69100036 | None:intergenic | 55.0% | |
| GGAGGATTGCCCTTCTCCAA+TGG | + | chr5.4:69099417-69099436 | None:intergenic | 55.0% | |
| GGCAAGGCAGTCTCAAGAAC+AGG | - | chr5.4:69099038-69099057 | MS.gene39816:CDS | 55.0% | |
| GGCAGTCTCAAGAACAGGCA+AGG | - | chr5.4:69099043-69099062 | MS.gene39816:CDS | 55.0% | |
| GGTGGAGGGCCTTGATCTTT+AGG | + | chr5.4:69099489-69099508 | None:intergenic | 55.0% | |
| GGTGTGTGGAGTTGGACCTA+TGG | + | chr5.4:69099313-69099332 | None:intergenic | 55.0% | |
| TATTGCCCCCCGTTATCCTC+TGG | - | chr5.4:69099717-69099736 | MS.gene39816:CDS | 55.0% | |
| TCATCCTCGACCACCGAATC+TGG | + | chr5.4:69098901-69098920 | None:intergenic | 55.0% | |
| TCCAATGGGAAACGCCTCTG+AGG | + | chr5.4:69099402-69099421 | None:intergenic | 55.0% | |
| TTAGGGTCGCCATAACCTGC+AGG | + | chr5.4:69100113-69100132 | None:intergenic | 55.0% | |
| TTGTCAGATGCTCCGGTCAC+CGG | + | chr5.4:69099180-69099199 | None:intergenic | 55.0% | |
| ! | AATGGGAAACGCCTCTGAGG+AGG | + | chr5.4:69099399-69099418 | None:intergenic | 55.0% |
| ! | GAGGCGTTTCCCATTGGAGA+AGG | - | chr5.4:69099404-69099423 | MS.gene39816:CDS | 55.0% |
| ! | GGGTTTGGAGTTTCGGAGGA+CGG | - | chr5.4:69100239-69100258 | MS.gene39816:CDS | 55.0% |
| !! | TCCTCAGAGGCGTTTCCCAT+TGG | - | chr5.4:69099398-69099417 | MS.gene39816:CDS | 55.0% |
| !!! | GGTCACCGGTTTTCCCTTCT+CGG | + | chr5.4:69099166-69099185 | None:intergenic | 55.0% |
| !!! | GTCACCGGTTTTCCCTTCTC+GGG | + | chr5.4:69099165-69099184 | None:intergenic | 55.0% |
| AGCACTGCGATCCTCCTCAG+AGG | - | chr5.4:69099385-69099404 | MS.gene39816:CDS | 60.0% | |
| AGCTTGAGCGGAGGATGTGG+AGG | - | chr5.4:69098950-69098969 | MS.gene39816:CDS | 60.0% | |
| AGGGCAATCCTCCACCATGG+TGG | - | chr5.4:69099424-69099443 | MS.gene39816:CDS | 60.0% | |
| CAACCGGGACTGAAGACTGG+TGG | - | chr5.4:69099448-69099467 | MS.gene39816:CDS | 60.0% | |
| CACCAGTCTTCAGTCCCGGT+TGG | + | chr5.4:69099450-69099469 | None:intergenic | 60.0% | |
| CTCGACCACCGAATCTGGCT+CGG | + | chr5.4:69098896-69098915 | None:intergenic | 60.0% | |
| GAAGACTGGTGGCCCCAGAT+CGG | - | chr5.4:69099459-69099478 | MS.gene39816:CDS | 60.0% | |
| GCAAACCGAGCCAGATTCGG+TGG | - | chr5.4:69098888-69098907 | MS.gene39816:CDS | 60.0% | |
| GCTTGAGCGGAGGATGTGGA+GGG | - | chr5.4:69098951-69098970 | MS.gene39816:CDS | 60.0% | |
| ! | CAGCCAAGGAAAGCGCAACC+TGG | - | chr5.4:69099643-69099662 | MS.gene39816:CDS | 60.0% |
| ! | CCTCCACCAGAGGATAACGG+GGG | + | chr5.4:69099726-69099745 | None:intergenic | 60.0% |
| !! | CTCCACCAGAGGATAACGGG+GGG | + | chr5.4:69099725-69099744 | None:intergenic | 60.0% |
| CCCCCGTTATCCTCTGGTGG+AGG | - | chr5.4:69099723-69099742 | MS.gene39816:CDS | 65.0% | |
| CCTCCACCATGGTGGCCAAC+CGG | - | chr5.4:69099432-69099451 | MS.gene39816:CDS | 65.0% | |
| CTCCACCATGGTGGCCAACC+GGG | - | chr5.4:69099433-69099452 | MS.gene39816:CDS | 65.0% | |
| GGCCAACCGGGACTGAAGAC+TGG | - | chr5.4:69099445-69099464 | MS.gene39816:CDS | 65.0% | |
| GGGCCACCAGTCTTCAGTCC+CGG | + | chr5.4:69099454-69099473 | None:intergenic | 65.0% | |
| TGCCCCCCGTTATCCTCTGG+TGG | - | chr5.4:69099720-69099739 | MS.gene39816:CDS | 65.0% | |
| ! | TCAGTCCCGGTTGGCCACCA+TGG | + | chr5.4:69099441-69099460 | None:intergenic | 65.0% |
| !! | CGAGCCAGATTCGGTGGTCG+AGG | - | chr5.4:69098894-69098913 | MS.gene39816:CDS | 65.0% |
| ! | CCGGTTGGCCACCATGGTGG+AGG | + | chr5.4:69099435-69099454 | None:intergenic | 70.0% |
| ! | GTCCCGGTTGGCCACCATGG+TGG | + | chr5.4:69099438-69099457 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 69098802 | 69100679 | 69098802 | ID=MS.gene39816 |
| chr5.4 | mRNA | 69098802 | 69100679 | 69098802 | ID=MS.gene39816.t1;Parent=MS.gene39816 |
| chr5.4 | exon | 69098802 | 69100679 | 69098802 | ID=MS.gene39816.t1.exon1;Parent=MS.gene39816.t1 |
| chr5.4 | CDS | 69098802 | 69100679 | 69098802 | ID=cds.MS.gene39816.t1;Parent=MS.gene39816.t1 |
| Gene Sequence |
| Protein sequence |
