Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39822.t1 | ATO87670.1 | 86.7 | 83 | 5 | 1 | 13 | 89 | 90 | 172 | 1.50E-31 | 145.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39822.t1 | Q2V9B0 | 73.5 | 83 | 16 | 1 | 13 | 89 | 95 | 177 | 3.5e-29 | 128.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39822.t1 | A0A072V1C4 | 86.7 | 83 | 5 | 1 | 13 | 89 | 84 | 166 | 1.1e-31 | 145.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene39822.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39822.t1 | MTR_4g107230 | 85.542 | 83 | 6 | 1 | 13 | 89 | 84 | 166 | 4.73e-35 | 120 |
| MS.gene39822.t1 | MTR_0036s0260 | 83.607 | 61 | 10 | 0 | 13 | 73 | 28 | 88 | 1.32e-32 | 112 |
| MS.gene39822.t1 | MTR_6g092540 | 77.049 | 61 | 14 | 0 | 13 | 73 | 97 | 157 | 3.14e-31 | 111 |
| MS.gene39822.t1 | MTR_8g101650 | 67.606 | 71 | 22 | 1 | 3 | 72 | 94 | 164 | 1.68e-30 | 108 |
| MS.gene39822.t1 | MTR_2g090305 | 80.328 | 61 | 12 | 0 | 13 | 73 | 28 | 88 | 2.54e-30 | 106 |
| MS.gene39822.t1 | MTR_4g100630 | 75.410 | 61 | 15 | 0 | 13 | 73 | 95 | 155 | 6.07e-30 | 108 |
| MS.gene39822.t1 | MTR_2g100930 | 70.312 | 64 | 19 | 0 | 10 | 73 | 106 | 169 | 1.04e-29 | 108 |
| MS.gene39822.t1 | MTR_4g111975 | 70.312 | 64 | 19 | 0 | 10 | 73 | 135 | 198 | 3.08e-28 | 103 |
| MS.gene39822.t1 | MTR_5g037080 | 85.417 | 48 | 7 | 0 | 13 | 60 | 102 | 149 | 2.22e-26 | 99.0 |
| MS.gene39822.t1 | MTR_1g111830 | 70.000 | 60 | 18 | 0 | 14 | 73 | 125 | 184 | 8.88e-26 | 95.9 |
| MS.gene39822.t1 | MTR_3g462790 | 67.213 | 61 | 20 | 0 | 13 | 73 | 147 | 207 | 4.40e-25 | 95.5 |
| MS.gene39822.t1 | MTR_5g069710 | 67.213 | 61 | 20 | 0 | 13 | 73 | 132 | 192 | 5.08e-25 | 95.1 |
| MS.gene39822.t1 | MTR_7g067080 | 67.213 | 61 | 20 | 0 | 13 | 73 | 140 | 200 | 6.22e-25 | 95.1 |
| MS.gene39822.t1 | MTR_3g104370 | 68.333 | 60 | 16 | 1 | 13 | 69 | 91 | 150 | 7.79e-24 | 90.5 |
| MS.gene39822.t1 | MTR_5g081860 | 55.556 | 72 | 29 | 1 | 13 | 81 | 125 | 196 | 1.04e-21 | 85.9 |
| MS.gene39822.t1 | MTR_8g063600 | 58.065 | 62 | 26 | 0 | 10 | 71 | 103 | 164 | 1.10e-19 | 80.9 |
| MS.gene39822.t1 | MTR_1g048660 | 58.333 | 60 | 24 | 1 | 14 | 72 | 13 | 72 | 2.06e-18 | 73.2 |
| MS.gene39822.t1 | MTR_5g088010 | 55.357 | 56 | 25 | 0 | 8 | 63 | 55 | 110 | 3.70e-18 | 76.3 |
| MS.gene39822.t1 | MTR_8g063870 | 57.377 | 61 | 24 | 1 | 15 | 73 | 94 | 154 | 4.19e-18 | 76.3 |
| MS.gene39822.t1 | MTR_5g027570 | 50.000 | 64 | 30 | 1 | 10 | 71 | 89 | 152 | 4.74e-18 | 75.5 |
| MS.gene39822.t1 | MTR_4g015130 | 60.784 | 51 | 20 | 0 | 23 | 73 | 3 | 53 | 7.96e-18 | 71.2 |
| MS.gene39822.t1 | MTR_5g027550 | 39.535 | 86 | 40 | 1 | 13 | 86 | 77 | 162 | 2.10e-17 | 73.9 |
| MS.gene39822.t1 | MTR_5g088060 | 61.224 | 49 | 19 | 0 | 15 | 63 | 274 | 322 | 2.73e-17 | 75.1 |
| MS.gene39822.t1 | MTR_5g488160 | 61.224 | 49 | 19 | 0 | 15 | 63 | 274 | 322 | 2.73e-17 | 75.1 |
| MS.gene39822.t1 | MTR_1g033620 | 69.565 | 46 | 14 | 0 | 28 | 73 | 20 | 65 | 5.72e-17 | 72.8 |
| MS.gene39822.t1 | MTR_5g075760 | 60.417 | 48 | 18 | 1 | 15 | 62 | 107 | 153 | 5.62e-13 | 62.0 |
| MS.gene39822.t1 | MTR_1g083180 | 46.269 | 67 | 32 | 2 | 8 | 71 | 56 | 121 | 1.71e-12 | 60.1 |
| MS.gene39822.t1 | MTR_5g075790 | 58.333 | 48 | 19 | 1 | 15 | 62 | 115 | 161 | 2.40e-12 | 60.5 |
| MS.gene39822.t1 | MTR_3g070110 | 40.000 | 75 | 37 | 1 | 15 | 81 | 97 | 171 | 2.90e-11 | 57.4 |
| MS.gene39822.t1 | MTR_8g072990 | 42.593 | 54 | 31 | 0 | 6 | 59 | 93 | 146 | 3.24e-11 | 57.4 |
| MS.gene39822.t1 | MTR_6g043490 | 40.741 | 54 | 32 | 0 | 6 | 59 | 100 | 153 | 6.20e-11 | 56.6 |
| MS.gene39822.t1 | MTR_6g043480 | 40.741 | 54 | 32 | 0 | 6 | 59 | 100 | 153 | 7.93e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39822.t1 | AT5G47390 | 62.353 | 85 | 26 | 1 | 14 | 92 | 97 | 181 | 2.63e-32 | 115 |
| MS.gene39822.t1 | AT1G49010 | 70.312 | 64 | 19 | 0 | 10 | 73 | 131 | 194 | 2.65e-28 | 103 |
| MS.gene39822.t1 | AT5G56840 | 65.753 | 73 | 22 | 2 | 13 | 82 | 91 | 163 | 1.04e-27 | 100 |
| MS.gene39822.t1 | AT5G08520 | 67.188 | 64 | 21 | 0 | 10 | 73 | 115 | 178 | 6.16e-27 | 100 |
| MS.gene39822.t1 | AT1G70000 | 87.234 | 47 | 6 | 0 | 14 | 60 | 99 | 145 | 4.44e-26 | 97.1 |
| MS.gene39822.t1 | AT1G70000 | 87.234 | 47 | 6 | 0 | 14 | 60 | 99 | 145 | 4.44e-26 | 97.1 |
| MS.gene39822.t1 | AT5G58900 | 61.644 | 73 | 27 | 1 | 13 | 84 | 141 | 213 | 5.00e-26 | 97.4 |
| MS.gene39822.t1 | AT2G38090 | 67.213 | 61 | 20 | 0 | 13 | 73 | 141 | 201 | 1.17e-25 | 96.7 |
| MS.gene39822.t1 | AT5G04760 | 62.319 | 69 | 26 | 0 | 5 | 73 | 91 | 159 | 1.82e-25 | 94.4 |
| MS.gene39822.t1 | AT3G16350 | 81.250 | 48 | 9 | 0 | 13 | 60 | 137 | 184 | 8.24e-25 | 95.9 |
| MS.gene39822.t1 | AT5G61620 | 65.000 | 60 | 21 | 0 | 14 | 73 | 109 | 168 | 1.32e-24 | 94.4 |
| MS.gene39822.t1 | AT1G74840 | 80.851 | 47 | 9 | 0 | 13 | 59 | 96 | 142 | 1.83e-24 | 92.4 |
| MS.gene39822.t1 | AT1G74840 | 80.851 | 47 | 9 | 0 | 13 | 59 | 96 | 142 | 2.65e-24 | 92.4 |
| MS.gene39822.t1 | AT1G19000 | 80.851 | 47 | 9 | 0 | 13 | 59 | 102 | 148 | 8.85e-24 | 91.7 |
| MS.gene39822.t1 | AT1G19000 | 80.851 | 47 | 9 | 0 | 13 | 59 | 102 | 148 | 8.85e-24 | 91.7 |
| MS.gene39822.t1 | AT5G01200 | 62.295 | 61 | 23 | 0 | 13 | 73 | 146 | 206 | 9.48e-23 | 88.6 |
| MS.gene39822.t1 | AT5G05790 | 56.338 | 71 | 30 | 1 | 10 | 79 | 128 | 198 | 8.18e-22 | 86.3 |
| MS.gene39822.t1 | AT5G05790 | 56.338 | 71 | 30 | 1 | 10 | 79 | 128 | 198 | 8.18e-22 | 86.3 |
| MS.gene39822.t1 | AT3G11280 | 62.712 | 59 | 22 | 0 | 13 | 71 | 127 | 185 | 2.57e-21 | 84.7 |
| MS.gene39822.t1 | AT3G11280 | 62.712 | 59 | 22 | 0 | 13 | 71 | 127 | 185 | 2.57e-21 | 84.7 |
| MS.gene39822.t1 | AT3G10580 | 61.404 | 57 | 22 | 0 | 13 | 69 | 95 | 151 | 7.07e-20 | 80.9 |
| MS.gene39822.t1 | AT3G10580 | 61.404 | 57 | 22 | 0 | 13 | 69 | 95 | 151 | 2.47e-19 | 79.7 |
| MS.gene39822.t1 | AT4G09450 | 56.452 | 62 | 27 | 0 | 10 | 71 | 88 | 149 | 4.98e-19 | 77.4 |
| MS.gene39822.t1 | AT5G23650 | 56.452 | 62 | 27 | 0 | 10 | 71 | 117 | 178 | 2.99e-17 | 74.7 |
| MS.gene39822.t1 | AT3G10590 | 52.542 | 59 | 28 | 0 | 14 | 72 | 112 | 170 | 4.53e-15 | 67.4 |
Find 24 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGACCTGTTCTGCCTCCAC+TGG | 0.404876 | 5.4:+69011988 | None:intergenic |
| AATTCCAGTGGAGGCAGAAC+AGG | 0.422715 | 5.4:-69011992 | MS.gene39822:CDS |
| GGAGTGTGGCTTACATGATC+GGG | 0.452279 | 5.4:+69014578 | None:intergenic |
| TTGGTTGGATTGGAGAAAGT+GGG | 0.463944 | 5.4:-69013784 | MS.gene39822:CDS |
| TTACCGTGTCGGTGGATCTA+CGG | 0.472848 | 5.4:+69013647 | None:intergenic |
| GGGAGTGTGGCTTACATGAT+CGG | 0.482059 | 5.4:+69014577 | None:intergenic |
| AGAAAGTGGGAAAAGGTGAT+TGG | 0.482958 | 5.4:-69013771 | MS.gene39822:CDS |
| TTTGGTTGGATTGGAGAAAG+TGG | 0.531455 | 5.4:-69013785 | MS.gene39822:CDS |
| GGATTGGAGAAAGTGGGAAA+AGG | 0.562648 | 5.4:-69013778 | MS.gene39822:CDS |
| TTGTGCTCTTCCTCAGTCCA+CGG | 0.578432 | 5.4:+69013814 | None:intergenic |
| GACGATTGAGATTACTTCGG+CGG | 0.616099 | 5.4:+69013674 | None:intergenic |
| GTGATTGGAGAGGAATCTCA+AGG | 0.619264 | 5.4:-69013756 | MS.gene39822:CDS |
| GTGGGAAAAGGTGATTGGAG+AGG | 0.624127 | 5.4:-69013766 | MS.gene39822:CDS |
| TGAATGGATCAGGGATTCCG+TGG | 0.626840 | 5.4:-69013831 | MS.gene39822:intron |
| TGACATGGAATGGTGTTGCT+CGG | 0.634157 | 5.4:-69014612 | None:intergenic |
| GCATGACTTGCAACATGCGT+AGG | 0.636946 | 5.4:+69013712 | None:intergenic |
| AACAGGTCAAGAATCAAGCT+AGG | 0.641165 | 5.4:-69011975 | MS.gene39822:CDS |
| TTAGGTATCTGCAATTCCAG+TGG | 0.643696 | 5.4:-69012004 | MS.gene39822:intron |
| GGTATCTGCAATTCCAGTGG+AGG | 0.652641 | 5.4:-69012001 | MS.gene39822:CDS |
| ATCAGGGATTCCGTGGACTG+AGG | 0.660333 | 5.4:-69013824 | MS.gene39822:intron |
| GAGTGTGGCTTACATGATCG+GGG | 0.662549 | 5.4:+69014579 | None:intergenic |
| GACGACGATTGAGATTACTT+CGG | 0.681636 | 5.4:+69013671 | None:intergenic |
| TCGCCGTAGATCCACCGACA+CGG | 0.682750 | 5.4:-69013650 | MS.gene39822:intron |
| AGTGTGGCTTACATGATCGG+GGG | 0.694186 | 5.4:+69014580 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAATATAATAGTTTAA+GGG | + | chr5.4:69012019-69012038 | None:intergenic | 10.0% |
| !! | ATATATCTTATAAGATTATA+AGG | - | chr5.4:69014325-69014344 | MS.gene39822:intron | 10.0% |
| !! | AAAGAATATAATAGTTTAAG+GGG | + | chr5.4:69012018-69012037 | None:intergenic | 15.0% |
| !! | AACTAATTGAATACAAATTT+AGG | + | chr5.4:69012995-69013014 | None:intergenic | 15.0% |
| !! | AATAAGAAAGAAATAATGTT+TGG | + | chr5.4:69013916-69013935 | None:intergenic | 15.0% |
| !! | AGTATTTCTTATAATATGTA+TGG | - | chr5.4:69014204-69014223 | MS.gene39822:intron | 15.0% |
| !! | CAAAAATAATAAAAATTGGA+TGG | + | chr5.4:69012183-69012202 | None:intergenic | 15.0% |
| !! | CTTGCAAAAATAATAAAAAT+TGG | + | chr5.4:69012187-69012206 | None:intergenic | 15.0% |
| !! | GAAAAGAATATAATAGTTTA+AGG | + | chr5.4:69012020-69012039 | None:intergenic | 15.0% |
| !! | GTAATAAAAATTGATGTATT+TGG | - | chr5.4:69014441-69014460 | MS.gene39822:intron | 15.0% |
| !!! | AATTTTCTCTGTTATTTTTT+TGG | - | chr5.4:69013059-69013078 | MS.gene39822:intron | 15.0% |
| !!! | ATTTTGTATTATAAACCTAA+AGG | + | chr5.4:69013405-69013424 | None:intergenic | 15.0% |
| !!! | TCTTATTTGAATTTTATTCA+TGG | - | chr5.4:69013863-69013882 | MS.gene39822:intron | 15.0% |
| !!! | TTAAGTCATTCATTTTTAAA+TGG | - | chr5.4:69013478-69013497 | MS.gene39822:intron | 15.0% |
| !! | AAGTGATTCATTTGTTTAAA+TGG | - | chr5.4:69013365-69013384 | MS.gene39822:intron | 20.0% |
| !! | AATACTCTAAATTAAGCATA+AGG | + | chr5.4:69014190-69014209 | None:intergenic | 20.0% |
| !! | ATTGATACCATGAAAAATAA+CGG | + | chr5.4:69013618-69013637 | None:intergenic | 20.0% |
| !! | ATTTCAATCAATTCAAACAA+AGG | + | chr5.4:69012691-69012710 | None:intergenic | 20.0% |
| !! | CTTATAATATTTGATGTATC+TGG | - | chr5.4:69014406-69014425 | MS.gene39822:intron | 20.0% |
| !! | TAATCAATAGAGTAGTATTA+TGG | - | chr5.4:69013017-69013036 | MS.gene39822:intron | 20.0% |
| !! | TATTGAAGCAAAAATATTCA+TGG | + | chr5.4:69012128-69012147 | None:intergenic | 20.0% |
| !!! | AGATTTTTTTTGAAGAACAT+TGG | - | chr5.4:69014074-69014093 | MS.gene39822:intron | 20.0% |
| !!! | TGTTATTGATTTTCTTTGAA+TGG | - | chr5.4:69012725-69012744 | MS.gene39822:intron | 20.0% |
| ! | AAAGCTACAAATTCAACTTA+CGG | + | chr5.4:69013531-69013550 | None:intergenic | 25.0% |
| ! | AACAACTTTGTGTTTATGTT+AGG | - | chr5.4:69014550-69014569 | MS.gene39822:intron | 25.0% |
| ! | AATATCTACTTAAAATCCTG+AGG | + | chr5.4:69012540-69012559 | None:intergenic | 25.0% |
| ! | AGGAATTTGAACTATTGTAA+AGG | - | chr5.4:69013134-69013153 | MS.gene39822:intron | 25.0% |
| ! | ATCTTCTAATTATGCAAACT+AGG | - | chr5.4:69013300-69013319 | MS.gene39822:intron | 25.0% |
| ! | CAATAGTTCAAATTCCTAAA+TGG | + | chr5.4:69013131-69013150 | None:intergenic | 25.0% |
| ! | TATGTTTAGAAAGCTATTTG+TGG | - | chr5.4:69014135-69014154 | MS.gene39822:intron | 25.0% |
| ! | TGGATTATGTATACTTTGAA+TGG | - | chr5.4:69013730-69013749 | MS.gene39822:CDS | 25.0% |
| ! | TTACAAATTCAATGTAGCTA+GGG | + | chr5.4:69013444-69013463 | None:intergenic | 25.0% |
| ! | TTTAATCTTTCATCTCTATC+AGG | - | chr5.4:69012221-69012240 | MS.gene39822:intron | 25.0% |
| !! | AAGTAAAGCGTTAAATCATT+TGG | - | chr5.4:69013673-69013692 | MS.gene39822:CDS | 25.0% |
| !! | TCTCACATTTAAATGGTTTT+TGG | - | chr5.4:69012596-69012615 | MS.gene39822:intron | 25.0% |
| !!! | CATGGATACTTTCTATTTTT+TGG | - | chr5.4:69013272-69013291 | MS.gene39822:intron | 25.0% |
| !!! | TAGTGTTTTTAAATCACTGT+TGG | + | chr5.4:69014303-69014322 | None:intergenic | 25.0% |
| !!! | TATTAAGACTTTTGCCATTT+AGG | - | chr5.4:69013114-69013133 | MS.gene39822:intron | 25.0% |
| !!! | TGTATGGTTTTTTTAATTGC+AGG | - | chr5.4:69014220-69014239 | MS.gene39822:intron | 25.0% |
| !!! | TTGCTTCTTTTTTTTTTGTG+TGG | - | chr5.4:69013189-69013208 | MS.gene39822:intron | 25.0% |
| AAATTCAACTTACGGTAAAG+TGG | + | chr5.4:69013523-69013542 | None:intergenic | 30.0% | |
| AATGCAGCACAATTCAAAAT+TGG | + | chr5.4:69012392-69012411 | None:intergenic | 30.0% | |
| AATTCAACTTACGGTAAAGT+GGG | + | chr5.4:69013522-69013541 | None:intergenic | 30.0% | |
| ACATGTGCACAAACTTTAAT+TGG | - | chr5.4:69012455-69012474 | MS.gene39822:intron | 30.0% | |
| AGCTCATTAGTACATATTGT+TGG | - | chr5.4:69013837-69013856 | MS.gene39822:intron | 30.0% | |
| ATAACAACATCTTATGCAAG+AGG | - | chr5.4:69012479-69012498 | MS.gene39822:intron | 30.0% | |
| ATGCATTTCAAGAGTTTACT+CGG | - | chr5.4:69014366-69014385 | MS.gene39822:intron | 30.0% | |
| ATGTACTAATGAGCTATCAA+AGG | + | chr5.4:69013832-69013851 | None:intergenic | 30.0% | |
| CAAATTCACAAAAAACACAC+AGG | + | chr5.4:69012326-69012345 | None:intergenic | 30.0% | |
| CGTTTACTCTATCAAATTCA+TGG | - | chr5.4:69013254-69013273 | MS.gene39822:intron | 30.0% | |
| CTACATGTCTCACATTTAAA+TGG | - | chr5.4:69012589-69012608 | MS.gene39822:intron | 30.0% | |
| CTTACAAATTCAATGTAGCT+AGG | + | chr5.4:69013445-69013464 | None:intergenic | 30.0% | |
| GATTTCTTTACAACTACCAA+AGG | + | chr5.4:69013219-69013238 | None:intergenic | 30.0% | |
| GCTTCAATATTAATTGTGTC+TGG | - | chr5.4:69012139-69012158 | MS.gene39822:intron | 30.0% | |
| GTTCATTATGTTAGTCCTTT+AGG | - | chr5.4:69013387-69013406 | MS.gene39822:intron | 30.0% | |
| TCACTTAACATATAACACCA+AGG | + | chr5.4:69013351-69013370 | None:intergenic | 30.0% | |
| TGTGCTGCATTATTCATTTA+GGG | - | chr5.4:69012401-69012420 | MS.gene39822:intron | 30.0% | |
| TTGTGCTGCATTATTCATTT+AGG | - | chr5.4:69012400-69012419 | MS.gene39822:intron | 30.0% | |
| ! | GATTTTCTTTGAATGGATCA+GGG | - | chr5.4:69012732-69012751 | MS.gene39822:intron | 30.0% |
| ! | TGATTTTCTTTGAATGGATC+AGG | - | chr5.4:69012731-69012750 | MS.gene39822:intron | 30.0% |
| ! | TTTGTACCTTTTACTACTGT+TGG | - | chr5.4:69013573-69013592 | MS.gene39822:intron | 30.0% |
| !!! | ACTCAGCAACAAACATTTTT+TGG | + | chr5.4:69012272-69012291 | None:intergenic | 30.0% |
| !!! | ATTAGTGCCGTTATTTTTCA+TGG | - | chr5.4:69013608-69013627 | MS.gene39822:intron | 30.0% |
| !!! | TTTTTTGTGTGGAAATCCTT+TGG | - | chr5.4:69013200-69013219 | MS.gene39822:intron | 30.0% |
| AACACCAAGGTATACATTCA+AGG | + | chr5.4:69013338-69013357 | None:intergenic | 35.0% | |
| ACAAAAAACACACAGGATAG+GGG | + | chr5.4:69012319-69012338 | None:intergenic | 35.0% | |
| ATAATAGTTTAAGGGGAGTG+TGG | + | chr5.4:69012011-69012030 | None:intergenic | 35.0% | |
| CACAAAAAACACACAGGATA+GGG | + | chr5.4:69012320-69012339 | None:intergenic | 35.0% | |
| CATTAAAGGTAGTTTACCTC+AGG | - | chr5.4:69012521-69012540 | MS.gene39822:intron | 35.0% | |
| GATGGAGCAAATTGAAACAA+AGG | + | chr5.4:69012165-69012184 | None:intergenic | 35.0% | |
| GTGCTGCATTATTCATTTAG+GGG | - | chr5.4:69012402-69012421 | MS.gene39822:intron | 35.0% | |
| TACGAACCAACAGTAGTAAA+AGG | + | chr5.4:69013582-69013601 | None:intergenic | 35.0% | |
| TCACAAAAAACACACAGGAT+AGG | + | chr5.4:69012321-69012340 | None:intergenic | 35.0% | |
| TCACTTGGATTGAGCATTAA+AGG | - | chr5.4:69012507-69012526 | MS.gene39822:intron | 35.0% | |
| TCCATGCTACATGTCATTAA+TGG | + | chr5.4:69013714-69013733 | None:intergenic | 35.0% | |
| TCCATTAATGACATGTAGCA+TGG | - | chr5.4:69013710-69013729 | MS.gene39822:CDS | 35.0% | |
| TGAACCTTGAATGTATACCT+TGG | - | chr5.4:69013331-69013350 | MS.gene39822:intron | 35.0% | |
| TGTCGAAAAAATTACCGTGT+CGG | + | chr5.4:69012939-69012958 | None:intergenic | 35.0% | |
| ! | TTGTAGCTTTTCTCGCTTTA+CGG | - | chr5.4:69013541-69013560 | MS.gene39822:intron | 35.0% |
| !! | AAGGTACTATTTGGTGCATA+AGG | + | chr5.4:69013813-69013832 | None:intergenic | 35.0% |
| !! | GAGCTATCAAAGGTACTATT+TGG | + | chr5.4:69013822-69013841 | None:intergenic | 35.0% |
| !! | TAGCAGGTTTGTTACTTACA+AGG | - | chr5.4:69012362-69012381 | MS.gene39822:intron | 35.0% |
| !!! | CAAGATGTTTTTGGTTGGAT+TGG | - | chr5.4:69012778-69012797 | MS.gene39822:intron | 35.0% |
| !!! | GTTTTTTGTGAATTTGCTCC+TGG | - | chr5.4:69012330-69012349 | MS.gene39822:intron | 35.0% |
| AACAGGTCAAGAATCAAGCT+AGG | - | chr5.4:69014597-69014616 | MS.gene39822:CDS | 40.0% | |
| AGAAAGTGGGAAAAGGTGAT+TGG | - | chr5.4:69012801-69012820 | MS.gene39822:intron | 40.0% | |
| ATGCAAGAGGAACTTTCACT+TGG | - | chr5.4:69012492-69012511 | MS.gene39822:intron | 40.0% | |
| CAAAAAACACACAGGATAGG+GGG | + | chr5.4:69012318-69012337 | None:intergenic | 40.0% | |
| CATTCTCTCTGAGCAAACAA+TGG | - | chr5.4:69012566-69012585 | MS.gene39822:intron | 40.0% | |
| GAATGAAGATCCTGCAAACT+TGG | - | chr5.4:69013774-69013793 | MS.gene39822:CDS | 40.0% | |
| GACGACGATTGAGATTACTT+CGG | + | chr5.4:69012904-69012923 | None:intergenic | 40.0% | |
| GTCCATACTAACACAACTTG+CGG | + | chr5.4:69014272-69014291 | None:intergenic | 40.0% | |
| TCAAATCCAACCAAGTTTGC+AGG | + | chr5.4:69013787-69013806 | None:intergenic | 40.0% | |
| TCAAATCTAGCTGCATGGTT+GGG | - | chr5.4:69014004-69014023 | MS.gene39822:intron | 40.0% | |
| TCCATACTAACACAACTTGC+GGG | + | chr5.4:69014271-69014290 | None:intergenic | 40.0% | |
| TGACTTCAAATCTAGCTGCA+TGG | - | chr5.4:69013999-69014018 | MS.gene39822:intron | 40.0% | |
| TGTAGCTAGGGACTTTCATT+AGG | + | chr5.4:69013432-69013451 | None:intergenic | 40.0% | |
| TTAGGTATCTGCAATTCCAG+TGG | - | chr5.4:69014568-69014587 | MS.gene39822:intron | 40.0% | |
| TTCAAATCTAGCTGCATGGT+TGG | - | chr5.4:69014003-69014022 | MS.gene39822:intron | 40.0% | |
| ! | CTGTTATCAAAAGTGTGCGA+AGG | + | chr5.4:69013892-69013911 | None:intergenic | 40.0% |
| ! | GAATTTGCTCCTGGTTTGTA+AGG | - | chr5.4:69012339-69012358 | MS.gene39822:intron | 40.0% |
| ! | TTGGTTGGATTGGAGAAAGT+GGG | - | chr5.4:69012788-69012807 | MS.gene39822:intron | 40.0% |
| ! | TTTGGTTGGATTGGAGAAAG+TGG | - | chr5.4:69012787-69012806 | MS.gene39822:intron | 40.0% |
| !! | GGAAGAGCACAAGATGTTTT+TGG | - | chr5.4:69012769-69012788 | MS.gene39822:intron | 40.0% |
| !!! | GAGCACAAGATGTTTTTGGT+TGG | - | chr5.4:69012773-69012792 | MS.gene39822:intron | 40.0% |
| AACCTGCTACCTTACAAACC+AGG | + | chr5.4:69012351-69012370 | None:intergenic | 45.0% | |
| CGAAAAAATTACCGTGTCGG+TGG | + | chr5.4:69012936-69012955 | None:intergenic | 45.0% | |
| GAAGATCCTGCAAACTTGGT+TGG | - | chr5.4:69013778-69013797 | MS.gene39822:CDS | 45.0% | |
| GACGATTGAGATTACTTCGG+CGG | + | chr5.4:69012901-69012920 | None:intergenic | 45.0% | |
| GGATTGGAGAAAGTGGGAAA+AGG | - | chr5.4:69012794-69012813 | MS.gene39822:intron | 45.0% | |
| GTGATTGGAGAGGAATCTCA+AGG | - | chr5.4:69012816-69012835 | MS.gene39822:intron | 45.0% | |
| TTACATGATCGGGGGATTGA+TGG | + | chr5.4:69011987-69012006 | None:intergenic | 45.0% | |
| AATTCCAGTGGAGGCAGAAC+AGG | - | chr5.4:69014580-69014599 | MS.gene39822:intron | 50.0% | |
| AGTGTGGCTTACATGATCGG+GGG | + | chr5.4:69011995-69012014 | None:intergenic | 50.0% | |
| GAGTGTGGCTTACATGATCG+GGG | + | chr5.4:69011996-69012015 | None:intergenic | 50.0% | |
| GCCCGCAAGTTGTGTTAGTA+TGG | - | chr5.4:69014267-69014286 | MS.gene39822:intron | 50.0% | |
| GGAGTGTGGCTTACATGATC+GGG | + | chr5.4:69011997-69012016 | None:intergenic | 50.0% | |
| GGCTGAGAAGAGACTGCTAT+TGG | - | chr5.4:69012423-69012442 | MS.gene39822:intron | 50.0% | |
| GGTATCTGCAATTCCAGTGG+AGG | - | chr5.4:69014571-69014590 | MS.gene39822:intron | 50.0% | |
| GTGGGAAAAGGTGATTGGAG+AGG | - | chr5.4:69012806-69012825 | MS.gene39822:intron | 50.0% | |
| TGAATGGATCAGGGATTCCG+TGG | - | chr5.4:69012741-69012760 | MS.gene39822:intron | 50.0% | |
| TTGTGCTCTTCCTCAGTCCA+CGG | + | chr5.4:69012761-69012780 | None:intergenic | 50.0% | |
| ! | CTCCTGGTTTGTAAGGTAGC+AGG | - | chr5.4:69012346-69012365 | MS.gene39822:intron | 50.0% |
| ! | GCATGACTTGCAACATGCGT+AGG | + | chr5.4:69012863-69012882 | None:intergenic | 50.0% |
| ! | GGGAGTGTGGCTTACATGAT+CGG | + | chr5.4:69011998-69012017 | None:intergenic | 50.0% |
| ! | TTACCGTGTCGGTGGATCTA+CGG | + | chr5.4:69012928-69012947 | None:intergenic | 50.0% |
| TTGACCTGTTCTGCCTCCAC+TGG | + | chr5.4:69014587-69014606 | None:intergenic | 55.0% | |
| ! | ATCAGGGATTCCGTGGACTG+AGG | - | chr5.4:69012748-69012767 | MS.gene39822:intron | 55.0% |
| TCGCCGTAGATCCACCGACA+CGG | - | chr5.4:69012922-69012941 | MS.gene39822:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 69011969 | 69014625 | 69011969 | ID=MS.gene39822 |
| chr5.4 | mRNA | 69011969 | 69014625 | 69011969 | ID=MS.gene39822.t1;Parent=MS.gene39822 |
| chr5.4 | exon | 69014592 | 69014625 | 69014592 | ID=MS.gene39822.t1.exon1;Parent=MS.gene39822.t1 |
| chr5.4 | CDS | 69014592 | 69014625 | 69014592 | ID=cds.MS.gene39822.t1;Parent=MS.gene39822.t1 |
| chr5.4 | exon | 69013651 | 69013841 | 69013651 | ID=MS.gene39822.t1.exon2;Parent=MS.gene39822.t1 |
| chr5.4 | CDS | 69013651 | 69013841 | 69013651 | ID=cds.MS.gene39822.t1;Parent=MS.gene39822.t1 |
| chr5.4 | exon | 69011969 | 69012022 | 69011969 | ID=MS.gene39822.t1.exon3;Parent=MS.gene39822.t1 |
| chr5.4 | CDS | 69011969 | 69012022 | 69011969 | ID=cds.MS.gene39822.t1;Parent=MS.gene39822.t1 |
| Gene Sequence |
| Protein sequence |
