AlfalfaGEDB | MS.gene39854

M. sativa cultivar XinJiangDaYe / MS.gene39854

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39854.t1	XP_003617046.1	93.4	653	43	0	504	1156	505	1157	0.00E+00	1162.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39854.t1	P93194	51.3	310	137	6	738	1046	793	1089	1.9e-76	289.3
MS.gene39854.t1	P93194	48.6	70	36	0	18	87	16	85	5.8e-12	75.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39854.t1	G7KHF3	93.4	653	43	0	504	1156	505	1157	0.0e+00	1162.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39854.t1	MTR_5g087340	90.666	1157	107	1	1	1156	1	1157	0.0	2099
MS.gene39854.t1	MTR_5g087350	68.971	1157	287	6	1	1156	1	1086	0.0	1558
MS.gene39854.t1	MTR_7g092880	62.706	1153	244	13	6	1156	46	1014	0.0	1320
MS.gene39854.t1	MTR_5g087360	68.993	874	201	4	201	1074	1	804	0.0	1161
MS.gene39854.t1	MTR_5g087360	65.938	320	109	0	749	1068	973	1292	1.89e-130	434
MS.gene39854.t1	MTR_5g087360	32.791	369	222	5	106	449	2	369	5.64e-45	178
MS.gene39854.t1	MTR_5g087360	33.138	341	218	5	71	406	39	374	1.26e-31	135
MS.gene39854.t1	MTR_5g087360	31.164	292	172	5	104	395	120	382	9.54e-28	122
MS.gene39854.t1	MTR_5g087360	63.095	84	31	0	1065	1148	889	972	1.03e-24	112
MS.gene39854.t1	MTR_5g087360	50.000	108	48	2	1034	1141	1340	1441	1.39e-19	95.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39854.t1	AT1G17750	33.577	1096	613	24	20	1046	21	1070	5.03e-155	491
MS.gene39854.t1	AT1G73080	46.654	523	273	3	103	620	252	773	1.53e-137	446
MS.gene39854.t1	AT1G73080	37.522	573	328	6	23	567	26	596	3.34e-87	306
MS.gene39854.t1	AT1G73080	45.370	324	155	8	730	1046	796	1104	6.27e-72	261
MS.gene39854.t1	AT1G73080	38.667	225	136	2	83	306	495	718	3.74e-30	130
MS.gene39854.t1	AT1G73080	32.796	186	123	2	71	255	531	715	1.41e-20	99.0
MS.gene39854.t1	AT4G20140	32.594	1037	576	22	89	1043	234	1229	3.67e-130	429
MS.gene39854.t1	AT4G20140	33.760	625	353	9	71	644	288	902	7.48e-80	286
MS.gene39854.t1	AT4G20140	34.231	520	336	5	51	565	50	568	9.75e-71	259
MS.gene39854.t1	AT4G20140	32.830	265	177	1	69	332	574	838	4.68e-32	136

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Find 253 sgRNAs with CRISPR-Local

Find 295 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAATAACACCTTTCA+TGG	0.338572	5.4:-68664677	None:intergenic
AAAAGGTTTCCAAGCTCTGA+TGG	0.549541	5.4:-68662612	None:intergenic
AAACAACTGACACATAAGAG+AGG	0.695577	5.4:-68663170	None:intergenic
AAATACGCAGACTACTGGAT+TGG	0.525901	5.4:+68663878	MS.gene39854:CDS
AACCATTATCCAACAATACA+AGG	0.570717	5.4:-68661714	None:intergenic
AACCTTCGCGAGTTACAACT+AGG	0.642665	5.4:+68662852	MS.gene39854:CDS
AACCTTGTATTGTTGGATAA+TGG	0.293246	5.4:+68661712	MS.gene39854:CDS
AAGGACTGCAGAAACTTGCT+TGG	0.560443	5.4:-68664608	None:intergenic
AAGTATTGGACCAGTGATAG+AGG	0.465384	5.4:-68664866	None:intergenic
AAGTCTGATGTATATAGCTA+CGG	0.587627	5.4:+68664409	MS.gene39854:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAATAACACCTTTCA+TGG	-	chr5.4:68664680-68664699	None:intergenic	30.0%
AACCATTATCCAACAATACA+AGG	-	chr5.4:68661717-68661736	None:intergenic	30.0%
AACCTTGTATTGTTGGATAA+TGG	+	chr5.4:68661712-68661731	MS.gene39854:CDS	30.0%
AAGTCTGATGTATATAGCTA+CGG	+	chr5.4:68664409-68664428	MS.gene39854:CDS	30.0%
AATGCATATGATATTGTTCC+AGG	+	chr5.4:68664382-68664401	MS.gene39854:CDS	30.0%
AATGGTTGAAAGACAAATCA+AGG	-	chr5.4:68662077-68662096	None:intergenic	30.0%
ACATTGCATAATCTGTTCTA+TGG	+	chr5.4:68662915-68662934	MS.gene39854:CDS	30.0%
AGATCTTTATGGCTGAAAAT+AGG	+	chr5.4:68664523-68664542	MS.gene39854:CDS	30.0%
ATAAGCAAGAATAATATCGG+TGG	+	chr5.4:68662510-68662529	MS.gene39854:CDS	30.0%
ATTCACAAAAACAGTCTCTT+TGG	+	chr5.4:68662153-68662172	MS.gene39854:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.4	gene	68661421	68665026	68661421	ID=MS.gene39854
chr5.4	mRNA	68661421	68665026	68661421	ID=MS.gene39854.t1;Parent=MS.gene39854
chr5.4	exon	68661421	68664244	68661421	ID=MS.gene39854.t1.exon1;Parent=MS.gene39854.t1
chr5.4	CDS	68661421	68664244	68661421	ID=cds.MS.gene39854.t1;Parent=MS.gene39854.t1
chr5.4	exon	68664380	68665026	68664380	ID=MS.gene39854.t1.exon2;Parent=MS.gene39854.t1
chr5.4	CDS	68664380	68665026	68664380	ID=cds.MS.gene39854.t1;Parent=MS.gene39854.t1

Gene Sequence

>MS.gene39854

ATGACTAGAATTAGTTGTAGCAGTAAAATTTTCAAAATCTTGTTGATTATTTCCTTCTTGCATGGTGCTACTGCTCTTACCACTGATGGGTTGACTCTCTCGTCGCTCTTGACTCACTGGACCTTTGTTCCTTTTCTCATCAACTATAGTTGGAAAGCTTCTGATTCAATTCCATGCTCATGGGTTGGTGTTCAATGTGACCATACCAACAATGTCATTTCCATTAATCTCACTAATCATGGGATTCTTCGTCAACTTGGACCAGAAATTGGAAACTTTTATTACTTGCAGAACCTTGTATTGTTGGATAATGGTTTCACCGGAAAAGTGCCTTCCGAGTTAAGCAACTGTAGTTTGCTTCAGAATTTAGATCTTTCTGAGAACAGATTCAGTGGAAATATACCATATAGTTTGAAAAGGTTGCAAAATTTAAAGTTTATAAGATTGTCTTCCAATCTGCTGACTGGTGAAATTCCAGATTCTTTGTTTGAAATTCAATCCCTTGAAGAAGTGAGCCTGCACAATAACCTTCTTAGTGGCAATGTCCCAACCAATATTGGAAACTTGACTAATCTATTGAGGTTGAATCTACATAGTAATATGTTTTCAGGGACTATTCCTTCATCTCTTGGCAATTGCAGTAAACTTGAAGACCTTGATTTGTCTTTCAACCATTTGAGAGGAGAAATTCCGGTCAGTATTTGGCGAATTCAAAGTCTTGTGCACATCTTGATTCACAAAAACAGTCTCTTTGGGGAACTACCTTTGGAAATGACATACCTTAAGTGTCTAAAAAATGTCTCTTTGTTTGAAAACCAGTTCTCTGGAGTCACACCTCAAAGCTTAGGAATGAACAGCAGCATAGTGAAGTTGGACTGTATGAATAACAAGTTCAGTGGCAATATCCCACCAAATCTTTGCTTTGGAAAGCATTTGTCAGTGTTCAACATGGGAATCAATCAACTTCAAGGTGGCATACCTTCTGATCTAGGAAGATGTGCAACTCTGACGAGGTTGTTTCTGAATCAAAATAATTTCACTGGGTCTCTTCCTGATTTTGAAAGTGATCTGAACCTGAAATACATGGACATAAGCAAGAATAATATCGGTGGATCAATTCCATCAGGTTTGGGAAATTGCACAAATCTCACATACATTAATTTGTCAAGGAACAAATTTGCAGGGATCATACCATCAGAGCTTGGAAACCTTTTGAATCTTGTGATTTTGGATCTTGCTCACAATAATTTGGAAGGTCCTTTGCCACTTAGGCTTTCAAACTGCACTAACATGGATCATTTTGATGTGGGATTCAATTTCTTAAATGGATCACTCCCATCAAGTTTGAGAAATTGGGCACACATAACTACATTGATTTTCAGAGAAAATTACTTCACGGGAGGTATCCCAGAGTTTTTGACAGAATTTAGCAACCTTCGCGAGTTACAACTAGGTGGAAATTTGCTTGGTGGCGAAATTCCTCGATGGATGGGGACATTGCATAATCTGTTCTATGGATTGAATCTGAGTTCTAATGGATTAACAGGTAGCATTCCTTCAGAAATTGGGAAGCTAGGACTGCTGCAAAGTCTGGATATATCCTTGAACAATTTAACAGGAAGCATATATGCTCTTCAAAGTCTTGTTTCATTAACTGAGATCAATGTTTCTTACAATCTCTTCAATGGTTCTGTACCTACAGGTCTAATGAGGTTAATGGATTCCTCACCATCATCATTCATGGGTAATCCTCTCTTATGTGTCAGTTGTTTGAATTGCATTAAAACTAGTTATGTAAATCCATGTGTATACAAATCAACCGATCACAAAGGTATCGGTAATGTTCAAATTGTGATGATAGAACTTGGATCCTCAATATTTCTTTCGGCTGTGCTGCTAATAATGATTCGAATGTATCTCCTAAAAAGATATAAGCAGGAATTCAAGATGTCTTGTTCCCCACTGGTCATGATGTTGAAGGCTATGGCTAAACTATATGATTGCTATAATTTTGGCAAAGGAATTGTGTGTAAAACCCAAATGACATCTGATCTTAAGCAGCAGTCGTATACTGAAAGACAACCTGCTCCGGCGTCTGATCTTAATCTACAGCCTGATATTGAAAGAGGAGCTTCTCCGGCGTCCGATTTTAACAAATGGTCCTATTATATTGAAAAAGGGGTTGGAAGGATTGGTGTCACATATGCTTGCGAATTTAATATCTCATGCAAAGAGAAGCCACTTACCCTTAAAGATGTAGTGCTGCAGGCCACTGAGAACCTAAATCAATGTTATATTATTGGCAAGGGAGGACACGGTACTGTGTACAAAGCCATAATTGGTCAACATGTTTTTGCTGTAAAGAAGGTTGAATTTGGATGGAACAAGAAAAAGCGGCTAAGTATCATGCGCAACGAAATTGAAGTCCTTGGGATGTTTAAGCATCGAAATTTGATCAAATACGCAGACTACTGGATTGGAGAGGAATATGGTTTAGTCTTATATGAATTCATGGAAAATGGAAGCCTTCATGATATTTTGCATGAAAAGAAACCCCCACCACCATTAACGTGGAATGTTCGGTGTAAAATAGCAGTCGGAATTGCTCAAGGACTAGCATATCTGCACTATGATTGTGTTCCAAGAATAGTGCACCGAGACATCAAACCAAAGAACATACTCGTTGACGACAATATGGAGCCTATTATAGCTGATTTTGGCACTGCCCTATGCAAGCAGATATCTGAGGATTCTAATAGTCATTCTAAAACTAGGAAAATGCTTTCGTCGCATGTTGTTGGTACTCCTGGATATATTGCACCGGGTAATTAGCCCTTTCAGAGCCAATAGTAAATACTAGTTTGATTTCTAGGATGTGATGATGACTTTATTTTGCAACAAAGCTTGAAAGTGGAGTTGTGCAAAATAGTATTCTCTAACATGTTTGCATTTTTGACAGAGAATGCATATGATATTGTTCCAGGAAGAAAGTCTGATGTATATAGCTACGGAGTTGTTTTGCTTGAGCTAATAACCAGAAAGAAATTGTTAGTTCCCTCTTTAAACGATGAAGCAGAGGAGACCCCATTAGTGATCCGGGCTAGATCTTTATGGCTGAAAATAGGCAAAACTGAGATGATTGTTGATCCTTACCTTGCAAGTGAATTTCCCAATTCAGTAGCACTAGCCAAGCAAGTTTCTGCAGTCCTTTCATTGGCATTACGTTGTATAGAGAAGGATCCAGGAAAGAGGCCGACCATGAAAGGTGTTATTGGTTTTTTTAATAAAAACTTGTATAAGCTGAGGTGTGATGAGGTTCAATATGGCGATGGACTTACAATTAAACTGATAGGAAACGGTAAGATTGAGTCTGTAAAATTGGTCAGGGTAGCTGCTCTAATTCTTCCAAAAATAACTTATGCTTGGCGTAATTTGACCTTCATTCCCTCTATCACTGGTCCAATACTTACCAAACCTTTCAACTGGTTTTTCCTATCGCGTTGGGGTCAATATAGATACCTGCAGAAATCCCTGGACTCACAGACCAAATCATACTACTATATAAACACCAAGCAAAATGAGTACACTGTGCAACTTAGTGAATAG

Protein sequence

>MS.gene39854.t1

MTRISCSSKIFKILLIISFLHGATALTTDGLTLSSLLTHWTFVPFLINYSWKASDSIPCSWVGVQCDHTNNVISINLTNHGILRQLGPEIGNFYYLQNLVLLDNGFTGKVPSELSNCSLLQNLDLSENRFSGNIPYSLKRLQNLKFIRLSSNLLTGEIPDSLFEIQSLEEVSLHNNLLSGNVPTNIGNLTNLLRLNLHSNMFSGTIPSSLGNCSKLEDLDLSFNHLRGEIPVSIWRIQSLVHILIHKNSLFGELPLEMTYLKCLKNVSLFENQFSGVTPQSLGMNSSIVKLDCMNNKFSGNIPPNLCFGKHLSVFNMGINQLQGGIPSDLGRCATLTRLFLNQNNFTGSLPDFESDLNLKYMDISKNNIGGSIPSGLGNCTNLTYINLSRNKFAGIIPSELGNLLNLVILDLAHNNLEGPLPLRLSNCTNMDHFDVGFNFLNGSLPSSLRNWAHITTLIFRENYFTGGIPEFLTEFSNLRELQLGGNLLGGEIPRWMGTLHNLFYGLNLSSNGLTGSIPSEIGKLGLLQSLDISLNNLTGSIYALQSLVSLTEINVSYNLFNGSVPTGLMRLMDSSPSSFMGNPLLCVSCLNCIKTSYVNPCVYKSTDHKGIGNVQIVMIELGSSIFLSAVLLIMIRMYLLKRYKQEFKMSCSPLVMMLKAMAKLYDCYNFGKGIVCKTQMTSDLKQQSYTERQPAPASDLNLQPDIERGASPASDFNKWSYYIEKGVGRIGVTYACEFNISCKEKPLTLKDVVLQATENLNQCYIIGKGGHGTVYKAIIGQHVFAVKKVEFGWNKKKRLSIMRNEIEVLGMFKHRNLIKYADYWIGEEYGLVLYEFMENGSLHDILHEKKPPPPLTWNVRCKIAVGIAQGLAYLHYDCVPRIVHRDIKPKNILVDDNMEPIIADFGTALCKQISEDSNSHSKTRKMLSSHVVGTPGYIAPENAYDIVPGRKSDVYSYGVVLLELITRKKLLVPSLNDEAEETPLVIRARSLWLKIGKTEMIVDPYLASEFPNSVALAKQVSAVLSLALRCIEKDPGKRPTMKGVIGFFNKNLYKLRCDEVQYGDGLTIKLIGNGKIESVKLVRVAALILPKITYAWRNLTFIPSITGPILTKPFNWFFLSRWGQYRYLQKSLDSQTKSYYYINTKQNEYTVQLSE