Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39880.t1 | XP_013468532.1 | 90.3 | 207 | 17 | 3 | 1 | 204 | 1 | 207 | 1.30E-96 | 362.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39880.t1 | Q9SLB7 | 77.1 | 105 | 24 | 0 | 1 | 105 | 1 | 105 | 5.7e-40 | 165.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39880.t1 | A0A072VKM2 | 90.3 | 207 | 17 | 3 | 1 | 204 | 1 | 207 | 9.5e-97 | 362.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene39880.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39880.t1 | MTR_1g070220 | 90.338 | 207 | 17 | 3 | 1 | 204 | 1 | 207 | 3.21e-136 | 380 |
| MS.gene39880.t1 | MTR_7g096530 | 58.559 | 222 | 68 | 6 | 1 | 202 | 1 | 218 | 6.83e-77 | 230 |
| MS.gene39880.t1 | MTR_7g096610 | 55.414 | 157 | 60 | 2 | 12 | 168 | 5 | 151 | 1.14e-48 | 158 |
| MS.gene39880.t1 | MTR_8g036105 | 63.248 | 117 | 43 | 0 | 6 | 122 | 9 | 125 | 3.16e-48 | 157 |
| MS.gene39880.t1 | MTR_1g070205 | 70.297 | 101 | 30 | 0 | 15 | 115 | 12 | 112 | 6.88e-48 | 157 |
| MS.gene39880.t1 | MTR_6g027710 | 68.317 | 101 | 32 | 0 | 15 | 115 | 40 | 140 | 6.47e-46 | 151 |
| MS.gene39880.t1 | MTR_8g036085 | 71.579 | 95 | 27 | 0 | 15 | 109 | 23 | 117 | 6.68e-46 | 151 |
| MS.gene39880.t1 | MTR_7g075230 | 52.817 | 142 | 62 | 3 | 13 | 149 | 10 | 151 | 3.09e-43 | 144 |
| MS.gene39880.t1 | MTR_7g074990 | 66.316 | 95 | 32 | 0 | 15 | 109 | 20 | 114 | 1.33e-42 | 143 |
| MS.gene39880.t1 | MTR_5g080470 | 62.887 | 97 | 36 | 0 | 13 | 109 | 5 | 101 | 3.38e-42 | 141 |
| MS.gene39880.t1 | MTR_4g083680 | 52.991 | 117 | 54 | 1 | 1 | 117 | 1 | 116 | 2.96e-40 | 135 |
| MS.gene39880.t1 | MTR_2g068760 | 53.982 | 113 | 51 | 1 | 5 | 117 | 3 | 114 | 1.37e-39 | 133 |
| MS.gene39880.t1 | MTR_3g031660 | 48.837 | 129 | 65 | 1 | 11 | 139 | 3 | 130 | 4.80e-38 | 130 |
| MS.gene39880.t1 | MTR_6g027700 | 53.279 | 122 | 52 | 1 | 15 | 131 | 7 | 128 | 5.28e-38 | 130 |
| MS.gene39880.t1 | MTR_5g083230 | 59.406 | 101 | 40 | 1 | 15 | 115 | 6 | 105 | 6.32e-38 | 129 |
| MS.gene39880.t1 | MTR_7g033800 | 54.545 | 121 | 54 | 1 | 7 | 127 | 3 | 122 | 6.99e-38 | 129 |
| MS.gene39880.t1 | MTR_6g005070 | 47.917 | 144 | 58 | 4 | 12 | 150 | 6 | 137 | 1.54e-36 | 125 |
| MS.gene39880.t1 | MTR_3g071590 | 53.390 | 118 | 53 | 2 | 15 | 131 | 8 | 124 | 3.81e-36 | 124 |
| MS.gene39880.t1 | MTR_3g452660 | 59.048 | 105 | 42 | 1 | 11 | 115 | 3 | 106 | 9.08e-36 | 127 |
| MS.gene39880.t1 | MTR_4g105170 | 62.105 | 95 | 35 | 1 | 15 | 109 | 11 | 104 | 9.73e-36 | 124 |
| MS.gene39880.t1 | MTR_3g077240 | 57.407 | 108 | 45 | 1 | 7 | 114 | 2 | 108 | 1.41e-35 | 124 |
| MS.gene39880.t1 | MTR_5g017950 | 58.095 | 105 | 43 | 1 | 11 | 115 | 4 | 107 | 3.79e-35 | 126 |
| MS.gene39880.t1 | MTR_6g005080 | 54.717 | 106 | 47 | 1 | 12 | 117 | 7 | 111 | 1.14e-34 | 120 |
| MS.gene39880.t1 | MTR_5g083960 | 53.465 | 101 | 46 | 1 | 15 | 115 | 39 | 138 | 2.76e-34 | 120 |
| MS.gene39880.t1 | MTR_3g073690 | 57.426 | 101 | 42 | 1 | 15 | 115 | 9 | 108 | 7.33e-34 | 120 |
| MS.gene39880.t1 | MTR_3g094690 | 52.727 | 110 | 50 | 2 | 15 | 124 | 47 | 154 | 1.09e-33 | 120 |
| MS.gene39880.t1 | MTR_3g071420 | 50.442 | 113 | 54 | 2 | 1 | 113 | 1 | 111 | 1.77e-33 | 118 |
| MS.gene39880.t1 | MTR_5g083010 | 51.852 | 108 | 50 | 2 | 6 | 113 | 3 | 108 | 2.41e-32 | 115 |
| MS.gene39880.t1 | MTR_2g093310 | 49.091 | 110 | 55 | 1 | 8 | 117 | 26 | 134 | 2.61e-32 | 115 |
| MS.gene39880.t1 | MTR_3g094690 | 52.727 | 110 | 49 | 3 | 15 | 124 | 47 | 153 | 6.15e-32 | 115 |
| MS.gene39880.t1 | MTR_4g060950 | 48.000 | 125 | 62 | 3 | 2 | 125 | 11 | 133 | 6.67e-32 | 114 |
| MS.gene39880.t1 | MTR_8g040900 | 61.176 | 85 | 32 | 1 | 11 | 95 | 3 | 86 | 4.89e-31 | 113 |
| MS.gene39880.t1 | MTR_5g075020 | 51.261 | 119 | 57 | 1 | 15 | 133 | 43 | 160 | 3.73e-30 | 111 |
| MS.gene39880.t1 | MTR_1g095850 | 51.961 | 102 | 48 | 1 | 16 | 117 | 73 | 173 | 4.10e-30 | 111 |
| MS.gene39880.t1 | MTR_5g075020 | 51.261 | 119 | 57 | 1 | 15 | 133 | 47 | 164 | 6.49e-30 | 110 |
| MS.gene39880.t1 | MTR_5g093010 | 48.000 | 100 | 51 | 1 | 16 | 115 | 6 | 104 | 1.47e-27 | 102 |
| MS.gene39880.t1 | MTR_7g028905 | 46.000 | 100 | 53 | 1 | 16 | 115 | 6 | 104 | 4.17e-27 | 100 |
| MS.gene39880.t1 | MTR_8g079660 | 45.455 | 99 | 53 | 1 | 15 | 113 | 8 | 105 | 4.84e-23 | 93.6 |
| MS.gene39880.t1 | MTR_4g107450 | 42.718 | 103 | 58 | 1 | 16 | 118 | 11 | 112 | 7.27e-20 | 85.5 |
| MS.gene39880.t1 | MTR_8g079620 | 41.414 | 99 | 57 | 1 | 15 | 113 | 8 | 105 | 7.97e-20 | 84.3 |
| MS.gene39880.t1 | MTR_2g100020 | 39.000 | 100 | 60 | 1 | 16 | 115 | 20 | 118 | 1.58e-19 | 84.3 |
| MS.gene39880.t1 | MTR_6g011250 | 45.679 | 81 | 42 | 2 | 16 | 95 | 10 | 89 | 1.70e-18 | 79.7 |
| MS.gene39880.t1 | MTR_6g011230 | 38.776 | 98 | 59 | 1 | 16 | 113 | 12 | 108 | 4.14e-18 | 79.0 |
| MS.gene39880.t1 | MTR_6g011200 | 36.364 | 99 | 61 | 2 | 16 | 113 | 10 | 107 | 1.30e-16 | 75.9 |
| MS.gene39880.t1 | MTR_8g079580 | 33.333 | 144 | 77 | 5 | 15 | 152 | 8 | 138 | 1.34e-16 | 75.5 |
| MS.gene39880.t1 | MTR_8g017090 | 37.864 | 103 | 63 | 1 | 16 | 118 | 13 | 114 | 4.70e-16 | 75.1 |
| MS.gene39880.t1 | MTR_4g099230 | 38.542 | 96 | 53 | 4 | 16 | 106 | 3 | 97 | 4.82e-14 | 67.0 |
| MS.gene39880.t1 | MTR_5g085390 | 33.043 | 115 | 75 | 2 | 16 | 129 | 10 | 123 | 2.42e-13 | 66.6 |
| MS.gene39880.t1 | MTR_4g088035 | 30.682 | 88 | 60 | 1 | 16 | 103 | 7 | 93 | 3.35e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39880.t1 | AT2G42430 | 49.194 | 248 | 77 | 8 | 1 | 202 | 1 | 245 | 3.13e-64 | 199 |
| MS.gene39880.t1 | AT3G58190 | 60.317 | 126 | 48 | 1 | 15 | 138 | 11 | 136 | 5.65e-48 | 156 |
| MS.gene39880.t1 | AT3G03760 | 68.868 | 106 | 33 | 0 | 15 | 120 | 51 | 156 | 9.20e-48 | 157 |
| MS.gene39880.t1 | AT2G42440 | 61.345 | 119 | 46 | 0 | 12 | 130 | 4 | 122 | 4.68e-47 | 155 |
| MS.gene39880.t1 | AT2G45420 | 71.429 | 98 | 28 | 0 | 18 | 115 | 40 | 137 | 5.84e-46 | 152 |
| MS.gene39880.t1 | AT4G00210 | 60.526 | 114 | 43 | 1 | 11 | 122 | 5 | 118 | 1.35e-45 | 150 |
| MS.gene39880.t1 | AT2G31310 | 63.107 | 103 | 38 | 0 | 13 | 115 | 5 | 107 | 1.20e-44 | 147 |
| MS.gene39880.t1 | AT2G45410 | 69.388 | 98 | 30 | 0 | 18 | 115 | 19 | 116 | 1.68e-44 | 147 |
| MS.gene39880.t1 | AT4G00220 | 67.347 | 98 | 32 | 0 | 18 | 115 | 20 | 117 | 2.67e-44 | 147 |
| MS.gene39880.t1 | AT5G06080 | 61.905 | 105 | 40 | 0 | 11 | 115 | 3 | 107 | 2.10e-43 | 143 |
| MS.gene39880.t1 | AT3G27650 | 60.000 | 100 | 39 | 1 | 15 | 114 | 39 | 137 | 1.74e-38 | 130 |
| MS.gene39880.t1 | AT5G63090 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.77e-36 | 125 |
| MS.gene39880.t1 | AT5G63090 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.77e-36 | 125 |
| MS.gene39880.t1 | AT5G63090 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.77e-36 | 125 |
| MS.gene39880.t1 | AT5G63090 | 60.194 | 103 | 40 | 1 | 7 | 109 | 3 | 104 | 3.77e-36 | 125 |
| MS.gene39880.t1 | AT2G30130 | 58.416 | 101 | 41 | 1 | 15 | 115 | 8 | 107 | 7.44e-36 | 125 |
| MS.gene39880.t1 | AT1G31320 | 55.208 | 96 | 42 | 1 | 7 | 102 | 5 | 99 | 2.74e-34 | 120 |
| MS.gene39880.t1 | AT1G07900 | 53.398 | 103 | 47 | 1 | 15 | 117 | 33 | 134 | 4.54e-34 | 120 |
| MS.gene39880.t1 | AT5G66870 | 55.238 | 105 | 46 | 1 | 11 | 115 | 3 | 106 | 2.52e-33 | 121 |
| MS.gene39880.t1 | AT2G30340 | 47.934 | 121 | 60 | 2 | 15 | 133 | 53 | 172 | 3.05e-33 | 120 |
| MS.gene39880.t1 | AT2G30340 | 48.333 | 120 | 59 | 2 | 15 | 132 | 52 | 170 | 3.84e-33 | 120 |
| MS.gene39880.t1 | AT1G16530 | 45.968 | 124 | 65 | 2 | 15 | 137 | 14 | 136 | 7.42e-33 | 116 |
| MS.gene39880.t1 | AT2G28500 | 48.696 | 115 | 57 | 2 | 15 | 129 | 55 | 167 | 8.43e-33 | 118 |
| MS.gene39880.t1 | AT2G23660 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 2.45e-32 | 119 |
| MS.gene39880.t1 | AT2G23660 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 2.45e-32 | 119 |
| MS.gene39880.t1 | AT2G23660 | 52.885 | 104 | 48 | 1 | 14 | 117 | 4 | 106 | 2.45e-32 | 119 |
| MS.gene39880.t1 | AT3G26660 | 44.248 | 113 | 61 | 2 | 16 | 127 | 6 | 117 | 1.56e-31 | 111 |
| MS.gene39880.t1 | AT3G11090 | 51.429 | 105 | 49 | 2 | 5 | 109 | 2 | 104 | 1.52e-30 | 110 |
| MS.gene39880.t1 | AT3G26620 | 44.340 | 106 | 58 | 1 | 16 | 121 | 6 | 110 | 1.66e-30 | 108 |
| MS.gene39880.t1 | AT1G65620 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.06e-29 | 109 |
| MS.gene39880.t1 | AT1G65620 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.06e-29 | 109 |
| MS.gene39880.t1 | AT1G65620 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.06e-29 | 109 |
| MS.gene39880.t1 | AT1G65620 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.06e-29 | 109 |
| MS.gene39880.t1 | AT1G65620 | 61.176 | 85 | 32 | 1 | 11 | 95 | 5 | 88 | 1.06e-29 | 109 |
| MS.gene39880.t1 | AT2G40470 | 52.632 | 114 | 53 | 1 | 15 | 128 | 20 | 132 | 2.83e-29 | 108 |
| MS.gene39880.t1 | AT2G40470 | 52.632 | 114 | 53 | 1 | 15 | 128 | 45 | 157 | 4.53e-29 | 108 |
| MS.gene39880.t1 | AT3G50510 | 46.465 | 99 | 52 | 1 | 15 | 113 | 12 | 109 | 2.11e-23 | 92.8 |
| MS.gene39880.t1 | AT3G50510 | 46.465 | 99 | 52 | 1 | 15 | 113 | 12 | 109 | 2.11e-23 | 92.8 |
| MS.gene39880.t1 | AT1G72980 | 35.000 | 120 | 77 | 1 | 12 | 131 | 10 | 128 | 2.06e-17 | 77.4 |
| MS.gene39880.t1 | AT5G35900 | 40.000 | 100 | 59 | 1 | 16 | 115 | 6 | 104 | 2.26e-17 | 77.0 |
| MS.gene39880.t1 | AT3G47870 | 35.000 | 100 | 64 | 1 | 16 | 115 | 37 | 135 | 1.07e-16 | 77.4 |
| MS.gene39880.t1 | AT3G13850 | 38.000 | 100 | 61 | 1 | 16 | 115 | 37 | 135 | 1.73e-16 | 75.9 |
| MS.gene39880.t1 | AT1G06280 | 45.570 | 79 | 34 | 2 | 16 | 90 | 25 | 98 | 6.43e-16 | 73.2 |
Find 42 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTATTATAGATCCTGTTTA+TGG | 0.144291 | 1.4:-57405453 | MS.gene39880:CDS |
| GCAGCTATTCATAAAGTATT+TGG | 0.189937 | 1.4:-57405564 | MS.gene39880:CDS |
| TTCATATTTGTGGGACAAAA+TGG | 0.226031 | 1.4:+57403984 | None:intergenic |
| TAAAAGAATGTCATATGATT+TGG | 0.238586 | 1.4:-57403868 | MS.gene39880:CDS |
| AATGATGGGAAACTATAATT+AGG | 0.332280 | 1.4:-57403820 | None:intergenic |
| AGGGAGCTCTTAGGAGATAT+AGG | 0.344167 | 1.4:+57403960 | None:intergenic |
| TGAATAGCTGCAAATCTTGC+AGG | 0.346463 | 1.4:+57405576 | None:intergenic |
| CATGGACATCCTGAGGATCT+AGG | 0.355593 | 1.4:+57405675 | None:intergenic |
| AAAAGAATGTCATATGATTT+GGG | 0.357241 | 1.4:-57403867 | MS.gene39880:CDS |
| TGATTTATGGCTTCTACAAA+TGG | 0.394946 | 1.4:-57405705 | None:intergenic |
| GATATAGGGTTCATATTTGT+GGG | 0.408424 | 1.4:+57403975 | None:intergenic |
| ATTGAATCAAGGGAGCTCTT+AGG | 0.410397 | 1.4:+57403951 | None:intergenic |
| CCTAGAGGAGACAGAGAACT+TGG | 0.411652 | 1.4:-57404051 | MS.gene39880:CDS |
| CCAAGTTCTCTGTCTCCTCT+AGG | 0.426551 | 1.4:+57404051 | None:intergenic |
| AACTTGGAGAATCAATGGTC+AGG | 0.427708 | 1.4:-57404035 | MS.gene39880:CDS |
| AGAAACATCTCTCGGAATGA+TGG | 0.438279 | 1.4:-57403835 | MS.gene39880:CDS |
| GGCTCTAGCCCTAGATCCTC+AGG | 0.441315 | 1.4:-57405684 | MS.gene39880:CDS |
| GCAATTGCGGCAACAGCATC+GGG | 0.447204 | 1.4:+57405492 | None:intergenic |
| AGATATAGGGTTCATATTTG+TGG | 0.449622 | 1.4:+57403974 | None:intergenic |
| GGGAGCTCTTAGGAGATATA+GGG | 0.451691 | 1.4:+57403961 | None:intergenic |
| TGTGATACACAACCATAAAC+AGG | 0.455984 | 1.4:+57405441 | None:intergenic |
| TGCTAAAATCAATTGAATCA+AGG | 0.464352 | 1.4:+57403940 | None:intergenic |
| CAGAGAACTTGGAGAATCAA+TGG | 0.493895 | 1.4:-57404040 | MS.gene39880:CDS |
| GCTAAAATCAATTGAATCAA+GGG | 0.496109 | 1.4:+57403941 | None:intergenic |
| TCTTGCAGGTCCTTGTTCAC+AGG | 0.500506 | 1.4:+57405590 | None:intergenic |
| AGCAATTGCGGCAACAGCAT+CGG | 0.501002 | 1.4:+57405491 | None:intergenic |
| GAAACATCTCTCGGAATGAT+GGG | 0.517494 | 1.4:-57403834 | MS.gene39880:CDS |
| ATGGACATCCTGAGGATCTA+GGG | 0.518326 | 1.4:+57405676 | None:intergenic |
| ATTCAGAAGTACACTTTCTA+CGG | 0.522613 | 1.4:+57405634 | None:intergenic |
| AGAAATTTGCATGCCCCACA+TGG | 0.523694 | 1.4:+57405657 | None:intergenic |
| ACTTGGAGAATCAATGGTCA+GGG | 0.558166 | 1.4:-57404034 | MS.gene39880:CDS |
| AGGTAAATTCAGTAGCATCT+TGG | 0.559995 | 1.4:+57405527 | None:intergenic |
| GCATCGGGACGATCATGAGC+AGG | 0.573962 | 1.4:+57405507 | None:intergenic |
| TTGAGCTTCATAAGCAATTG+CGG | 0.600657 | 1.4:+57405479 | None:intergenic |
| GATCCTCAGGATGTCCATGT+GGG | 0.601232 | 1.4:-57405671 | MS.gene39880:CDS |
| AGATCCTCAGGATGTCCATG+TGG | 0.614428 | 1.4:-57405672 | MS.gene39880:CDS |
| AGCACAACTAATGCAAGTGA+AGG | 0.620211 | 1.4:-57404096 | MS.gene39880:CDS |
| GAGCGGCAAGAAACATCTCT+CGG | 0.627630 | 1.4:-57403843 | MS.gene39880:CDS |
| AGTAATTAGTCAAAGCCTAG+AGG | 0.635942 | 1.4:-57404066 | MS.gene39880:CDS |
| TGCCCCACATGGACATCCTG+AGG | 0.640571 | 1.4:+57405668 | None:intergenic |
| TGTCATATGATTTGGGTGAG+CGG | 0.650337 | 1.4:-57403860 | MS.gene39880:CDS |
| ATCCTCAGGATGTCCATGTG+GGG | 0.681917 | 1.4:-57405670 | MS.gene39880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATATCATTTTAATTTG+GGG | + | chr1.4:57404971-57404990 | None:intergenic | 10.0% |
| !!! | AATCAATTAAAATTTGTTAA+TGG | + | chr1.4:57404839-57404858 | None:intergenic | 10.0% |
| !!! | TAATATATAACTTCTTTTTA+AGG | - | chr1.4:57404450-57404469 | MS.gene39880:intron | 10.0% |
| !! | TGTGTTAAAATGTTAATTAT+AGG | + | chr1.4:57404140-57404159 | None:intergenic | 15.0% |
| !! | TTACTCCTTTAAATAAATAA+CGG | - | chr1.4:57405230-57405249 | MS.gene39880:intron | 15.0% |
| !! | AAAAGAATGTCATATGATTT+GGG | - | chr1.4:57405653-57405672 | MS.gene39880:CDS | 20.0% |
| !! | ACCTAATCAAAATACAAAAA+CGG | + | chr1.4:57405392-57405411 | None:intergenic | 20.0% |
| !! | ATGTACCGTTATTTATTTAA+AGG | + | chr1.4:57405238-57405257 | None:intergenic | 20.0% |
| !! | CAAAAACTTCCTATATAAAA+AGG | - | chr1.4:57404322-57404341 | MS.gene39880:intron | 20.0% |
| !! | GTCATATTAATTGTTCATAT+GGG | - | chr1.4:57405330-57405349 | MS.gene39880:intron | 20.0% |
| !! | TAAAAGAATGTCATATGATT+TGG | - | chr1.4:57405652-57405671 | MS.gene39880:CDS | 20.0% |
| !! | TGTCATATTAATTGTTCATA+TGG | - | chr1.4:57405329-57405348 | MS.gene39880:intron | 20.0% |
| !!! | AAATATACCTTTTTGTATGA+AGG | + | chr1.4:57405054-57405073 | None:intergenic | 20.0% |
| !!! | ACATATATGTGTTCAAATTT+TGG | - | chr1.4:57404499-57404518 | MS.gene39880:intron | 20.0% |
| !!! | CAAGAATTACTTAGAATTTT+AGG | + | chr1.4:57405194-57405213 | None:intergenic | 20.0% |
| ! | AAATATATATTCAACGTTCG+CGG | + | chr1.4:57405307-57405326 | None:intergenic | 25.0% |
| ! | ACAAAAATCAAAGCAATAGA+GGG | + | chr1.4:57404707-57404726 | None:intergenic | 25.0% |
| ! | ACAATTTCCTTCATACAAAA+AGG | - | chr1.4:57405044-57405063 | MS.gene39880:intron | 25.0% |
| ! | ACCATAATTTCACAAAGAAA+AGG | + | chr1.4:57404740-57404759 | None:intergenic | 25.0% |
| ! | ATAAATAACGGTACATTGAT+TGG | - | chr1.4:57405242-57405261 | MS.gene39880:intron | 25.0% |
| ! | ATAATTTCACAAAGAAAAGG+AGG | + | chr1.4:57404737-57404756 | None:intergenic | 25.0% |
| ! | CCTAATCAAAATACAAAAAC+GGG | + | chr1.4:57405391-57405410 | None:intergenic | 25.0% |
| ! | CTAATCAAAATACAAAAACG+GGG | + | chr1.4:57405390-57405409 | None:intergenic | 25.0% |
| ! | GCTAAAATCAATTGAATCAA+GGG | + | chr1.4:57405582-57405601 | None:intergenic | 25.0% |
| ! | TGCTAAAATCAATTGAATCA+AGG | + | chr1.4:57405583-57405602 | None:intergenic | 25.0% |
| !! | AAACTGCAACCTTTTTATAT+AGG | + | chr1.4:57404334-57404353 | None:intergenic | 25.0% |
| !! | ACCATTTGATAAACAACTTT+TGG | + | chr1.4:57404767-57404786 | None:intergenic | 25.0% |
| !! | CCATTTGATAAACAACTTTT+GGG | + | chr1.4:57404766-57404785 | None:intergenic | 25.0% |
| !! | TCCTTTTCTTTGTGAAATTA+TGG | - | chr1.4:57404736-57404755 | MS.gene39880:intron | 25.0% |
| !! | TTCTTTTATTAGAGTAAGCT+TGG | + | chr1.4:57405640-57405659 | None:intergenic | 25.0% |
| !!! | CAGTTGTTGTTTGTAAATAT+TGG | - | chr1.4:57404374-57404393 | MS.gene39880:intron | 25.0% |
| !!! | TATTTTTGCTTTACAACAAC+AGG | - | chr1.4:57404102-57404121 | MS.gene39880:CDS | 25.0% |
| AGATATAGGGTTCATATTTG+TGG | + | chr1.4:57405549-57405568 | None:intergenic | 30.0% | |
| CACAAAAATCAAAGCAATAG+AGG | + | chr1.4:57404708-57404727 | None:intergenic | 30.0% | |
| CCCAAAAGTTGTTTATCAAA+TGG | - | chr1.4:57404763-57404782 | MS.gene39880:intron | 30.0% | |
| CGTATTATAGATCCTGTTTA+TGG | - | chr1.4:57404067-57404086 | MS.gene39880:CDS | 30.0% | |
| GATATAGGGTTCATATTTGT+GGG | + | chr1.4:57405548-57405567 | None:intergenic | 30.0% | |
| TACCTATGTATACAACAACA+GGG | + | chr1.4:57404577-57404596 | None:intergenic | 30.0% | |
| TCACAAAAGTTGTCAAAAAG+TGG | + | chr1.4:57404644-57404663 | None:intergenic | 30.0% | |
| TTCATATTTGTGGGACAAAA+TGG | + | chr1.4:57405539-57405558 | None:intergenic | 30.0% | |
| TTGTTGTATACATAGGTAGT+AGG | - | chr1.4:57404579-57404598 | MS.gene39880:intron | 30.0% | |
| ! | ATTCAGAAGTACACTTTCTA+CGG | + | chr1.4:57403889-57403908 | None:intergenic | 30.0% |
| ! | GCAGCTATTCATAAAGTATT+TGG | - | chr1.4:57403956-57403975 | MS.gene39880:CDS | 30.0% |
| !! | TGGGTTTTATGTTTGACTTA+TGG | - | chr1.4:57405349-57405368 | MS.gene39880:intron | 30.0% |
| !!! | CCCGTTTTTGTATTTTGATT+AGG | - | chr1.4:57405388-57405407 | MS.gene39880:intron | 30.0% |
| AGGTAAATTCAGTAGCATCT+TGG | + | chr1.4:57403996-57404015 | None:intergenic | 35.0% | |
| AGTAATTAGTCAAAGCCTAG+AGG | - | chr1.4:57405454-57405473 | MS.gene39880:CDS | 35.0% | |
| ATCGATCAGTAAGAGTTGTT+TGG | - | chr1.4:57404939-57404958 | MS.gene39880:intron | 35.0% | |
| CCTTGTTCACAGGAAAAATA+AGG | + | chr1.4:57403923-57403942 | None:intergenic | 35.0% | |
| CTACCTATGTATACAACAAC+AGG | + | chr1.4:57404578-57404597 | None:intergenic | 35.0% | |
| GTATACATAGGTAGTAGGTT+TGG | - | chr1.4:57404584-57404603 | MS.gene39880:intron | 35.0% | |
| TGTGATACACAACCATAAAC+AGG | + | chr1.4:57404082-57404101 | None:intergenic | 35.0% | |
| TTGAGCTTCATAAGCAATTG+CGG | + | chr1.4:57404044-57404063 | None:intergenic | 35.0% | |
| ! | AATAACGGTACATTGATTGG+TGG | - | chr1.4:57405245-57405264 | MS.gene39880:intron | 35.0% |
| ! | TCACAAAGAAAAGGAGGTAT+TGG | + | chr1.4:57404731-57404750 | None:intergenic | 35.0% |
| !! | TACATTGATTGGTGGATTTG+CGG | - | chr1.4:57405253-57405272 | MS.gene39880:intron | 35.0% |
| !!! | CCTTATTTTTCCTGTGAACA+AGG | - | chr1.4:57403920-57403939 | MS.gene39880:CDS | 35.0% |
| AACTTGGAGAATCAATGGTC+AGG | - | chr1.4:57405485-57405504 | MS.gene39880:CDS | 40.0% | |
| ACTTGGAGAATCAATGGTCA+GGG | - | chr1.4:57405486-57405505 | MS.gene39880:CDS | 40.0% | |
| AGAAACATCTCTCGGAATGA+TGG | - | chr1.4:57405685-57405704 | MS.gene39880:CDS | 40.0% | |
| AGCACAACTAATGCAAGTGA+AGG | - | chr1.4:57405424-57405443 | MS.gene39880:CDS | 40.0% | |
| ATCGACGAGTAAGAGTTGTT+TGG | - | chr1.4:57404911-57404930 | MS.gene39880:intron | 40.0% | |
| ATTGAATCAAGGGAGCTCTT+AGG | + | chr1.4:57405572-57405591 | None:intergenic | 40.0% | |
| CAGAGAACTTGGAGAATCAA+TGG | - | chr1.4:57405480-57405499 | MS.gene39880:CDS | 40.0% | |
| CTCCCTGTTGTTGTATACAT+AGG | - | chr1.4:57404572-57404591 | MS.gene39880:intron | 40.0% | |
| GAAACATCTCTCGGAATGAT+GGG | - | chr1.4:57405686-57405705 | MS.gene39880:CDS | 40.0% | |
| TGAATAGCTGCAAATCTTGC+AGG | + | chr1.4:57403947-57403966 | None:intergenic | 40.0% | |
| ! | TGTCATATGATTTGGGTGAG+CGG | - | chr1.4:57405660-57405679 | MS.gene39880:CDS | 40.0% |
| AGAAATTTGCATGCCCCACA+TGG | + | chr1.4:57403866-57403885 | None:intergenic | 45.0% | |
| AGGGAGCTCTTAGGAGATAT+AGG | + | chr1.4:57405563-57405582 | None:intergenic | 45.0% | |
| ATGGACATCCTGAGGATCTA+GGG | + | chr1.4:57403847-57403866 | None:intergenic | 45.0% | |
| CGGCGCAAACGTGATATAAA+AGG | + | chr1.4:57405287-57405306 | None:intergenic | 45.0% | |
| GGGAGCTCTTAGGAGATATA+GGG | + | chr1.4:57405562-57405581 | None:intergenic | 45.0% | |
| !!! | AAAAATATATCATTTTAATT+TGG | + | chr1.4:57404973-57404992 | None:intergenic | 5.0% |
| !!! | AAAATATATCATTTTAATTT+GGG | + | chr1.4:57404972-57404991 | None:intergenic | 5.0% |
| AGATCCTCAGGATGTCCATG+TGG | - | chr1.4:57403848-57403867 | MS.gene39880:CDS | 50.0% | |
| AGCAATTGCGGCAACAGCAT+CGG | + | chr1.4:57404032-57404051 | None:intergenic | 50.0% | |
| ATCCTCAGGATGTCCATGTG+GGG | - | chr1.4:57403850-57403869 | MS.gene39880:CDS | 50.0% | |
| CATGGACATCCTGAGGATCT+AGG | + | chr1.4:57403848-57403867 | None:intergenic | 50.0% | |
| CCAAGTTCTCTGTCTCCTCT+AGG | + | chr1.4:57405472-57405491 | None:intergenic | 50.0% | |
| CCTAGAGGAGACAGAGAACT+TGG | - | chr1.4:57405469-57405488 | MS.gene39880:CDS | 50.0% | |
| GAGCGGCAAGAAACATCTCT+CGG | - | chr1.4:57405677-57405696 | MS.gene39880:CDS | 50.0% | |
| GATCCTCAGGATGTCCATGT+GGG | - | chr1.4:57403849-57403868 | MS.gene39880:CDS | 50.0% | |
| TCTTGCAGGTCCTTGTTCAC+AGG | + | chr1.4:57403933-57403952 | None:intergenic | 50.0% | |
| GCAATTGCGGCAACAGCATC+GGG | + | chr1.4:57404031-57404050 | None:intergenic | 55.0% | |
| GCATCGGGACGATCATGAGC+AGG | + | chr1.4:57404016-57404035 | None:intergenic | 60.0% | |
| TGCCCCACATGGACATCCTG+AGG | + | chr1.4:57403855-57403874 | None:intergenic | 60.0% | |
| ! | GGCTCTAGCCCTAGATCCTC+AGG | - | chr1.4:57403836-57403855 | MS.gene39880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 57403821 | 57405721 | 57403821 | ID=MS.gene39880 |
| chr1.4 | mRNA | 57403821 | 57405721 | 57403821 | ID=MS.gene39880.t1;Parent=MS.gene39880 |
| chr1.4 | exon | 57405419 | 57405721 | 57405419 | ID=MS.gene39880.t1.exon1;Parent=MS.gene39880.t1 |
| chr1.4 | CDS | 57405419 | 57405721 | 57405419 | ID=cds.MS.gene39880.t1;Parent=MS.gene39880.t1 |
| chr1.4 | exon | 57403821 | 57404132 | 57403821 | ID=MS.gene39880.t1.exon2;Parent=MS.gene39880.t1 |
| chr1.4 | CDS | 57403821 | 57404132 | 57403821 | ID=cds.MS.gene39880.t1;Parent=MS.gene39880.t1 |
| Gene Sequence |
| Protein sequence |
