AlfalfaGEDB | MS.gene39964

M. sativa cultivar XinJiangDaYe / MS.gene39964

KEGG: -
GO: GO:0003674 GO:0005488 GO:0008270 GO:0043167 GO:0043169 GO:0046872 GO:0046914
PFAM: PF03101.18

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39964.t1	XP_024642224.1	63	663	51	2	1	471	1	661	2.40E-225	791.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39964.t1	Q9SZL8	22.2	594	251	10	15	403	47	634	3.0e-30	134.8

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39964.t1	A0A2Z6M8U9	52.7	664	121	4	1	475	1	660	3.3e-179	637.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene39964.t1	TF	FAR1

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39964.t1	MTR_0856s0010	78.395	162	33	1	1	162	1	160	2.69e-90	275
MS.gene39964.t1	MTR_7g115320	56.164	73	29	1	123	195	6	75	9.03e-21	87.4
MS.gene39964.t1	MTR_1g008290	34.328	134	85	1	96	229	14	144	2.21e-19	85.5
MS.gene39964.t1	MTR_7g446060	40.449	89	51	1	111	199	1	87	1.97e-16	76.6
MS.gene39964.t1	MTR_7g074790	25.444	169	105	2	34	199	8	158	7.89e-14	71.6
MS.gene39964.t1	MTR_6g051425	24.272	206	128	4	46	233	27	222	9.25e-14	73.2
MS.gene39964.t1	MTR_0558s0020	23.810	273	165	9	19	254	9	275	2.78e-13	71.2
MS.gene39964.t1	MTR_5g039760	28.061	196	115	4	34	226	8	180	4.01e-13	68.6
MS.gene39964.t1	MTR_1g083640	23.881	268	161	9	19	249	24	285	4.15e-13	70.5
MS.gene39964.t1	MTR_1g013060	22.642	212	154	4	31	233	19	229	2.00e-11	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene39964.t1	AT4G38180	38.889	180	102	3	224	403	463	634	1.58e-29	124
MS.gene39964.t1	AT4G38180	26.335	281	188	8	15	281	47	322	2.86e-18	89.4
MS.gene39964.t1	AT3G22170	30.380	237	153	3	206	440	425	651	9.56e-27	115
MS.gene39964.t1	AT3G22170	24.898	245	144	5	5	233	41	261	1.20e-11	68.2
MS.gene39964.t1	AT3G22170	30.380	237	153	3	206	440	425	651	9.56e-27	115
MS.gene39964.t1	AT3G22170	24.898	245	144	5	5	233	41	261	1.20e-11	68.2
MS.gene39964.t1	AT4G15090	32.512	203	128	2	235	437	447	640	1.08e-26	115
MS.gene39964.t1	AT4G15090	31.780	236	153	6	5	233	18	252	1.50e-22	102
MS.gene39964.t1	AT4G15090	32.512	203	128	2	235	437	447	640	1.08e-26	115
MS.gene39964.t1	AT4G15090	31.780	236	153	6	5	233	18	252	1.50e-22	102

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Find 94 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATCCAAACAGAGTGA+TGG	0.620927	1.4:+58781333	MS.gene39964:CDS
AAATGATTTAACTTCATCTA+AGG	0.332045	1.4:-58779342	None:intergenic
AAATGGACTTGCATGTAAGG+AGG	0.643265	1.4:+58779651	MS.gene39964:CDS
AACAAGGAACGGCGTGCAAT+TGG	0.405287	1.4:+58779794	MS.gene39964:CDS
AAGAAGATGATGATGCATGC+TGG	0.530084	1.4:+58779291	MS.gene39964:CDS
AAGATTAGAACATCGAGAAA+AGG	0.502639	1.4:+58779401	MS.gene39964:CDS
AATGTTAAAGAAAGTTTCAA+TGG	0.418875	1.4:+58781192	MS.gene39964:CDS
AATTGAAAGAAGATGGATTG+TGG	0.618386	1.4:+58779552	MS.gene39964:CDS
AATTGAAGCCACAAATGGAG+AGG	0.658436	1.4:+58781037	MS.gene39964:CDS
AATTTGATACAAATCTTAGC+AGG	0.483019	1.4:-58779533	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGATTAGAACATCGAGAAA+AGG	+	chr1.4:58779401-58779420	MS.gene39964:CDS	30.0%
AATCAACATTACTTGGATGT+GGG	+	chr1.4:58780059-58780078	MS.gene39964:intron	30.0%
AGTATACATGCTTTCTTTGA+TGG	+	chr1.4:58780502-58780521	MS.gene39964:CDS	30.0%
ATGAATACCACAATTTCTTG+CGG	+	chr1.4:58780625-58780644	MS.gene39964:CDS	30.0%
CATTTAATGAAAGAGATGTG+AGG	+	chr1.4:58779762-58779781	MS.gene39964:CDS	30.0%
CTAGTTAAAACATACTTCTC+TGG	-	chr1.4:58780958-58780977	None:intergenic	30.0%
CTCACATCTCTTTCATTAAA+TGG	-	chr1.4:58779764-58779783	None:intergenic	30.0%
GGAATTATGTTAACAAGGAA+CGG	+	chr1.4:58779783-58779802	MS.gene39964:CDS	30.0%
GTATAATGAGCGTCATAAAT+GGG	+	chr1.4:58780420-58780439	MS.gene39964:intron	30.0%
TACTCATGCTAAATTTAAGG+AGG	+	chr1.4:58780687-58780706	MS.gene39964:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	58779212	58781576	58779212	ID=MS.gene39964
chr1.4	mRNA	58779212	58781576	58779212	ID=MS.gene39964.t1;Parent=MS.gene39964
chr1.4	exon	58779212	58779916	58779212	ID=MS.gene39964.t1.exon1;Parent=MS.gene39964.t1
chr1.4	CDS	58779212	58779916	58779212	ID=cds.MS.gene39964.t1;Parent=MS.gene39964.t1
chr1.4	exon	58780493	58781368	58780493	ID=MS.gene39964.t1.exon2;Parent=MS.gene39964.t1
chr1.4	CDS	58780493	58781368	58780493	ID=cds.MS.gene39964.t1;Parent=MS.gene39964.t1
chr1.4	exon	58781460	58781576	58781460	ID=MS.gene39964.t1.exon3;Parent=MS.gene39964.t1
chr1.4	CDS	58781460	58781576	58781460	ID=cds.MS.gene39964.t1;Parent=MS.gene39964.t1

Gene Sequence

>MS.gene39964

ATGGATAGTTCAAATGTTGTTGTGGATTGTGGTAGTACTTATGGTGAAGGTATAGAAGTTGGCAGCTTTAATGTTGAAGAAGAAGATGATGATGCATGCTGGGAGCCTAAAATAGATATGTGTTTTTCTACCTTAGATGAAGTTAAATCATTTTATAAAGAGTATGCTTTTAGAAAGGGTTTTGAATGGAAGATTAGAACATCGAGAAAAGGACGAGATGGGGAGGTCTGCTACTTAATTCTTGCATGCACAAGAGAAGGGTCTCAAGTGACAAAAAGTCTGTGTACATTGAAGACACGTCCGACAATGGGAAAAAATTGTCCTGCTAAGATTTGTATCAAATTGAAAGAAGATGGATTGTGGTACATTCAAAAATTTGAACCTGATCATTCTCATCATACCAGCCCTAGAAAGGCAAGGTTGTTCAAGGCCAACAAGAAAATGGACTTGCATGTAAGGAGGACAATTGAAATCAATGATGATGCAGGTGTGAGGGTCAACAAGACTTTTCAATCTCTGGTTAAAGATGCAGGAGGGTATGAAAATACTCCATTTAATGAAAGAGATGTGAGGAATTATGTTAACAAGGAACGGCGTGCAATTGGAAAAGAAGGTGATGGCAAGGCCTTGATAAACTATTTTTGTCAAATGAGGGAAGAAAATCCATATTTCTTCTATGAAATAGATTTGGATGACGATTTTCATGTAAGGAATGTCTTTTGGGCTGATGCAAGAAGTAGGGCTGCTTATGAGTATTTTGGAGATGTTGTAACTTTCGACACAACATATTTGACCAACAAATATGATATGCCTTTTGCTGTTTTTGTTGGTGTGAATCACCATGGTCAATCAACATTACTTGGATGTGGGTTGCTATCAGGAGAAGACACAGAGTCGTTTGTATGGCTTTTTAATTCATGGCTTCGTTGTATGCTGGGAAAGCCCCCTGTTGGTATTGTGACTGACCAATGTAAGGCAATGCAAAATGCAATCGAGGCAGTTTTCCCTACAACTCGCCACAGGTGGTGTTTATGGCATATAATGAAAAAAATTGCCGAAAAACTCAGCGGATATGGTGATTATAAAAGGATTAAGTTTGCAATGAAAGAAGTTGTTTATGATACGTTTACAACATATGATTTTGAAGAGAAATGGTGTTCCTTCATCGAAAAATTTGAGCTTCAGCAGAATCATTGGTTGACTGGGTTGTATAATGAGCGTCATAAATGGGTACCAACCTTCTTAAGAAAATATTTTTGGGCTGGTATGTCAACAACTCAGCGAAGTGAGAGTATACATGCTTTCTTTGATGGTTATATCAATTCAACGACAAGTCTAAATCAATTTACGAAACAATATGATAATGCTCTCCGTAGTCGAGCAGAAAAAGAATTTGAAGCTGATTTTAATTCGATGAATACCACAATTTCTTGCGGGTCAAACTCGTCAATTGAAAAGCAATTCCAAGGTGAGTATACTCATGCTAAATTTAAGGAGGTTCAAGTTGAATTTAGATCTAAAGTGAATTGTGCTTCTTCATTGAACATTGTGGAGGGCTGCTTTGCCACATATCATGTGTTGGAGGATGTGTTAGTTGGTGATAGAACGAAAGAACATGTATTTAAAGTTGTGTTTAATCGAGAAAACCATGATCTTAGTTGTGAATGCTCATTGTTTGAATTTAGAGGTATTTTGTGTCGGCATGTGTTATGTGTGTGTGCTCAAGAAAGGGTTAAAAACGTACCAGAGAAGTATGTTTTAACTAGATGGAAGAAAAATATTAAAAGGAAGCATACATATATTAAGACCAGTTATTGTGTGACACAATTGAAGCCACAAATGGAGAGGTTTGACAAGTTATGCAAGCATTTCTACGAGGTTGCTGAAGTAGCGGCAGAGTTTGAAGACACATCTAAGGACCTCCATGAAATTTTACATCGGTTTACTTCTGATTTACCCACCAGGAATGCTACAATTGAAAATGTTAAAGAAAGTTTCAATGGTGACTCAAATCCAAACAATGGTATTGAAATTCACAGTCCATTGCGGGTTAAACGTAAAGGCCGCCCTCCATCAAAAAGAAAAATGTCTGCAATCGAAAAAGTTGTTAAGAAGCCAAGTAAACGATCCAAACAGAGTGATGGCAGAGGAACTAATGTATGTTTTATTTTATTTTATTTATAAGTTTTGTAATTACCATGTATATATGGATATTGCATCTTAATTTTCTGTTTGTCCAAATTTGTAGGACACCAATTCTGAAAGAGTGGCAAATCAGTTTGACAACAACATCTACATTGAAACATCTGTTGATGTTGTAAGTGGTGGAGATTTGCTAGATGCAAGTACAATGGTAGTTAACTAG

Protein sequence

>MS.gene39964.t1

MDSSNVVVDCGSTYGEGIEVGSFNVEEEDDDACWEPKIDMCFSTLDEVKSFYKEYAFRKGFEWKIRTSRKGRDGEVCYLILACTREGSQVTKSLCTLKTRPTMGKNCPAKICIKLKEDGLWYIQKFEPDHSHHTSPRKARLFKANKKMDLHVRRTIEINDDAGVRVNKTFQSLVKDAGGYENTPFNERDVRNYVNKERRAIGKEGDGKALINYFCQMREENPYFFYEIDLDDDFHRSESIHAFFDGYINSTTSLNQFTKQYDNALRSRAEKEFEADFNSMNTTISCGSNSSIEKQFQGEYTHAKFKEVQVEFRSKVNCASSLNIVEGCFATYHVLEDVLVGDRTKEHVFKVVFNRENHDLSCECSLFEFRGILCRHVLCVCAQERVKNVPEKYVLTRWKKNIKRKHTYIKTSYCVTQLKPQMERFDKLCKHFYEVAEVAAEFEDTSKDLHEILHRFTSDLPTRNATIENVKESFNGDSNPNNGIEIHSPLRVKRKGRPPSKRKMSAIEKVVKKPSKRSKQSDGRGTNDTNSERVANQFDNNIYIETSVDVVSGGDLLDASTMVVN