Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39964.t1 | XP_024642224.1 | 63 | 663 | 51 | 2 | 1 | 471 | 1 | 661 | 2.40E-225 | 791.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39964.t1 | Q9SZL8 | 22.2 | 594 | 251 | 10 | 15 | 403 | 47 | 634 | 3.0e-30 | 134.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39964.t1 | A0A2Z6M8U9 | 52.7 | 664 | 121 | 4 | 1 | 475 | 1 | 660 | 3.3e-179 | 637.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene39964.t1 | TF | FAR1 |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39964.t1 | MTR_0856s0010 | 78.395 | 162 | 33 | 1 | 1 | 162 | 1 | 160 | 2.69e-90 | 275 |
MS.gene39964.t1 | MTR_7g115320 | 56.164 | 73 | 29 | 1 | 123 | 195 | 6 | 75 | 9.03e-21 | 87.4 |
MS.gene39964.t1 | MTR_1g008290 | 34.328 | 134 | 85 | 1 | 96 | 229 | 14 | 144 | 2.21e-19 | 85.5 |
MS.gene39964.t1 | MTR_7g446060 | 40.449 | 89 | 51 | 1 | 111 | 199 | 1 | 87 | 1.97e-16 | 76.6 |
MS.gene39964.t1 | MTR_7g074790 | 25.444 | 169 | 105 | 2 | 34 | 199 | 8 | 158 | 7.89e-14 | 71.6 |
MS.gene39964.t1 | MTR_6g051425 | 24.272 | 206 | 128 | 4 | 46 | 233 | 27 | 222 | 9.25e-14 | 73.2 |
MS.gene39964.t1 | MTR_0558s0020 | 23.810 | 273 | 165 | 9 | 19 | 254 | 9 | 275 | 2.78e-13 | 71.2 |
MS.gene39964.t1 | MTR_5g039760 | 28.061 | 196 | 115 | 4 | 34 | 226 | 8 | 180 | 4.01e-13 | 68.6 |
MS.gene39964.t1 | MTR_1g083640 | 23.881 | 268 | 161 | 9 | 19 | 249 | 24 | 285 | 4.15e-13 | 70.5 |
MS.gene39964.t1 | MTR_1g013060 | 22.642 | 212 | 154 | 4 | 31 | 233 | 19 | 229 | 2.00e-11 | 64.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene39964.t1 | AT4G38180 | 38.889 | 180 | 102 | 3 | 224 | 403 | 463 | 634 | 1.58e-29 | 124 |
MS.gene39964.t1 | AT4G38180 | 26.335 | 281 | 188 | 8 | 15 | 281 | 47 | 322 | 2.86e-18 | 89.4 |
MS.gene39964.t1 | AT3G22170 | 30.380 | 237 | 153 | 3 | 206 | 440 | 425 | 651 | 9.56e-27 | 115 |
MS.gene39964.t1 | AT3G22170 | 24.898 | 245 | 144 | 5 | 5 | 233 | 41 | 261 | 1.20e-11 | 68.2 |
MS.gene39964.t1 | AT3G22170 | 30.380 | 237 | 153 | 3 | 206 | 440 | 425 | 651 | 9.56e-27 | 115 |
MS.gene39964.t1 | AT3G22170 | 24.898 | 245 | 144 | 5 | 5 | 233 | 41 | 261 | 1.20e-11 | 68.2 |
MS.gene39964.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 1.08e-26 | 115 |
MS.gene39964.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.50e-22 | 102 |
MS.gene39964.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 1.08e-26 | 115 |
MS.gene39964.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.50e-22 | 102 |
MS.gene39964.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 1.08e-26 | 115 |
MS.gene39964.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.50e-22 | 102 |
MS.gene39964.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 1.08e-26 | 115 |
MS.gene39964.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.50e-22 | 102 |
MS.gene39964.t1 | AT4G15090 | 32.512 | 203 | 128 | 2 | 235 | 437 | 447 | 640 | 1.08e-26 | 115 |
MS.gene39964.t1 | AT4G15090 | 31.780 | 236 | 153 | 6 | 5 | 233 | 18 | 252 | 1.50e-22 | 102 |
MS.gene39964.t1 | AT1G52520 | 31.250 | 224 | 149 | 4 | 235 | 454 | 467 | 689 | 1.01e-24 | 109 |
MS.gene39964.t1 | AT1G52520 | 25.871 | 201 | 135 | 6 | 36 | 233 | 85 | 274 | 4.64e-11 | 66.2 |
MS.gene39964.t1 | AT4G38170 | 33.333 | 171 | 109 | 2 | 237 | 407 | 238 | 403 | 6.81e-24 | 105 |
MS.gene39964.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 335 | 559 | 1.67e-23 | 105 |
MS.gene39964.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 1.72e-23 | 105 |
MS.gene39964.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 1.72e-23 | 105 |
MS.gene39964.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 1.72e-23 | 105 |
MS.gene39964.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 1.87e-23 | 105 |
MS.gene39964.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 1.87e-23 | 105 |
MS.gene39964.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 335 | 559 | 1.95e-23 | 105 |
MS.gene39964.t1 | AT2G32250 | 31.197 | 234 | 150 | 4 | 222 | 453 | 376 | 600 | 2.12e-23 | 105 |
MS.gene39964.t1 | AT1G76320 | 31.795 | 195 | 122 | 3 | 236 | 430 | 385 | 568 | 3.19e-22 | 101 |
MS.gene39964.t1 | AT1G76320 | 30.102 | 196 | 128 | 4 | 40 | 233 | 1 | 189 | 1.06e-18 | 90.5 |
MS.gene39964.t1 | AT1G76320 | 31.795 | 195 | 122 | 3 | 236 | 430 | 385 | 568 | 3.40e-22 | 101 |
MS.gene39964.t1 | AT1G76320 | 30.102 | 196 | 128 | 4 | 40 | 233 | 1 | 189 | 1.07e-18 | 90.5 |
MS.gene39964.t1 | AT1G76320 | 31.795 | 195 | 122 | 3 | 236 | 430 | 385 | 568 | 3.40e-22 | 101 |
MS.gene39964.t1 | AT1G76320 | 30.102 | 196 | 128 | 4 | 40 | 233 | 1 | 189 | 1.07e-18 | 90.5 |
MS.gene39964.t1 | AT1G76320 | 31.795 | 195 | 122 | 3 | 236 | 430 | 385 | 568 | 3.49e-22 | 101 |
MS.gene39964.t1 | AT1G76320 | 30.102 | 196 | 128 | 4 | 40 | 233 | 1 | 189 | 1.46e-18 | 90.1 |
MS.gene39964.t1 | AT2G27110 | 30.049 | 203 | 128 | 5 | 242 | 440 | 278 | 470 | 1.08e-18 | 90.5 |
MS.gene39964.t1 | AT2G27110 | 30.049 | 203 | 128 | 5 | 242 | 440 | 423 | 615 | 1.12e-18 | 90.5 |
MS.gene39964.t1 | AT2G27110 | 30.049 | 203 | 128 | 5 | 242 | 440 | 423 | 615 | 1.12e-18 | 90.5 |
MS.gene39964.t1 | AT3G06250 | 32.022 | 178 | 110 | 3 | 224 | 401 | 536 | 702 | 5.88e-18 | 88.2 |
MS.gene39964.t1 | AT3G06250 | 32.022 | 178 | 110 | 3 | 224 | 401 | 536 | 702 | 5.88e-18 | 88.2 |
MS.gene39964.t1 | AT3G06250 | 32.022 | 178 | 110 | 3 | 224 | 401 | 536 | 702 | 5.88e-18 | 88.2 |
MS.gene39964.t1 | AT5G18960 | 31.902 | 163 | 106 | 2 | 239 | 401 | 569 | 726 | 9.28e-17 | 84.3 |
MS.gene39964.t1 | AT5G18960 | 31.902 | 163 | 106 | 2 | 239 | 401 | 569 | 726 | 9.28e-17 | 84.3 |
MS.gene39964.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 338 | 526 | 3.04e-16 | 82.8 |
MS.gene39964.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 3.18e-16 | 82.8 |
MS.gene39964.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 3.18e-16 | 82.8 |
MS.gene39964.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 3.56e-16 | 82.4 |
MS.gene39964.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 409 | 597 | 4.04e-16 | 82.4 |
MS.gene39964.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 4.44e-16 | 82.4 |
MS.gene39964.t1 | AT4G19990 | 30.256 | 195 | 130 | 2 | 235 | 429 | 395 | 583 | 4.44e-16 | 82.4 |
MS.gene39964.t1 | AT1G80010 | 26.347 | 167 | 117 | 3 | 244 | 407 | 502 | 665 | 5.62e-13 | 72.4 |
Find 94 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCACATCTCTTTCATTAAA+TGG | 0.113358 | 1.4:-58779761 | None:intergenic |
TTGAACAACCTTGCCTTTCT+AGG | 0.211285 | 1.4:-58779617 | None:intergenic |
TCTATTTCATAGAAGAAATA+TGG | 0.239499 | 1.4:-58779875 | None:intergenic |
GTATACTCATGCTAAATTTA+AGG | 0.258580 | 1.4:+58780684 | MS.gene39964:CDS |
AGTATACATGCTTTCTTTGA+TGG | 0.267857 | 1.4:+58780502 | MS.gene39964:CDS |
TGCTCATTGTTTGAATTTAG+AGG | 0.299376 | 1.4:+58780877 | MS.gene39964:CDS |
CTCTGTTTGGATCGTTTACT+TGG | 0.304558 | 1.4:-58781327 | None:intergenic |
TTTCTTCTATGAAATAGATT+TGG | 0.314992 | 1.4:+58779880 | MS.gene39964:CDS |
TCCTCTGCCATCACTCTGTT+TGG | 0.325597 | 1.4:-58781340 | None:intergenic |
GTGGATTGTGGTAGTACTTA+TGG | 0.331695 | 1.4:+58779233 | MS.gene39964:CDS |
AAATGATTTAACTTCATCTA+AGG | 0.332045 | 1.4:-58779342 | None:intergenic |
TGAATTTCAATACCATTGTT+TGG | 0.340625 | 1.4:-58781225 | None:intergenic |
ATTTGCCACTCTTTCAGAAT+TGG | 0.355554 | 1.4:-58781464 | None:intergenic |
GTTCAAGGCCAACAAGAAAA+TGG | 0.356488 | 1.4:+58779634 | MS.gene39964:CDS |
CAATTGTGTCACACAATAAC+TGG | 0.362060 | 1.4:-58781019 | None:intergenic |
TGAAATTCACAGTCCATTGC+GGG | 0.380283 | 1.4:+58781239 | MS.gene39964:CDS |
TGTATCAAATTGAAAGAAGA+TGG | 0.385199 | 1.4:+58779545 | MS.gene39964:CDS |
TTGTCAAACCTCTCCATTTG+TGG | 0.385569 | 1.4:-58781045 | None:intergenic |
AACAAGGAACGGCGTGCAAT+TGG | 0.405287 | 1.4:+58779794 | MS.gene39964:CDS |
TGAATACCACAATTTCTTGC+GGG | 0.415845 | 1.4:+58780626 | MS.gene39964:CDS |
TAAACCGATGTAAAATTTCA+TGG | 0.416870 | 1.4:-58781134 | None:intergenic |
AATGTTAAAGAAAGTTTCAA+TGG | 0.418875 | 1.4:+58781192 | MS.gene39964:CDS |
CAATCTCTGGTTAAAGATGC+AGG | 0.432888 | 1.4:+58779722 | MS.gene39964:CDS |
TGAACAACCTTGCCTTTCTA+GGG | 0.439320 | 1.4:-58779616 | None:intergenic |
AGAAAATGGACTTGCATGTA+AGG | 0.444990 | 1.4:+58779648 | MS.gene39964:CDS |
CTAGTTAAAACATACTTCTC+TGG | 0.462491 | 1.4:-58780955 | None:intergenic |
CAACCTTGCCTTTCTAGGGC+TGG | 0.475224 | 1.4:-58779612 | None:intergenic |
TTGAAGACACGTCCGACAAT+GGG | 0.482433 | 1.4:+58779500 | MS.gene39964:CDS |
AATTTGATACAAATCTTAGC+AGG | 0.483019 | 1.4:-58779533 | None:intergenic |
CCTTTACGTTTAACCCGCAA+TGG | 0.484773 | 1.4:-58781252 | None:intergenic |
AGCATTCACAACTAAGATCA+TGG | 0.486727 | 1.4:-58780858 | None:intergenic |
TAGAAAGGCAAGGTTGTTCA+AGG | 0.489258 | 1.4:+58779619 | MS.gene39964:CDS |
AGAGTTTGAAGACACATCTA+AGG | 0.494136 | 1.4:+58781107 | MS.gene39964:CDS |
TCATCATACCAGCCCTAGAA+AGG | 0.496553 | 1.4:+58779604 | MS.gene39964:CDS |
ATTCTTGCATGCACAAGAGA+AGG | 0.499742 | 1.4:+58779449 | MS.gene39964:CDS |
AAGATTAGAACATCGAGAAA+AGG | 0.502639 | 1.4:+58779401 | MS.gene39964:CDS |
TTCTTCATTGAACATTGTGG+AGG | 0.503706 | 1.4:+58780744 | MS.gene39964:CDS |
GACACAATTGAAGCCACAAA+TGG | 0.507144 | 1.4:+58781032 | MS.gene39964:CDS |
TCAAATGTTGTTGTGGATTG+TGG | 0.509257 | 1.4:+58779221 | MS.gene39964:CDS |
CTGGTATGATGAGAATGATC+AGG | 0.514347 | 1.4:-58779593 | None:intergenic |
TCTTCATTGAACATTGTGGA+GGG | 0.515757 | 1.4:+58780745 | MS.gene39964:CDS |
CGGCGTGCAATTGGAAAAGA+AGG | 0.518535 | 1.4:+58779803 | MS.gene39964:CDS |
CATCGAGAAAAGGACGAGAT+GGG | 0.520186 | 1.4:+58779411 | MS.gene39964:CDS |
AAGAAGATGATGATGCATGC+TGG | 0.530084 | 1.4:+58779291 | MS.gene39964:CDS |
TATGTGTGTGTGCTCAAGAA+AGG | 0.531946 | 1.4:+58780920 | MS.gene39964:CDS |
TATGGTGAAGGTATAGAAGT+TGG | 0.532672 | 1.4:+58779251 | MS.gene39964:CDS |
CTTTGCCACATATCATGTGT+TGG | 0.534557 | 1.4:+58780771 | MS.gene39964:CDS |
ACATCGAGAAAAGGACGAGA+TGG | 0.535829 | 1.4:+58779410 | MS.gene39964:CDS |
GGATAGTTCAAATGTTGTTG+TGG | 0.550233 | 1.4:+58779214 | MS.gene39964:CDS |
GTGTTGGAGGATGTGTTAGT+TGG | 0.553858 | 1.4:+58780787 | MS.gene39964:CDS |
ATTGAAATCAATGATGATGC+AGG | 0.561814 | 1.4:+58779677 | MS.gene39964:CDS |
CCATTGCGGGTTAAACGTAA+AGG | 0.562059 | 1.4:+58781252 | MS.gene39964:CDS |
GTTTGACCCGCAAGAAATTG+TGG | 0.569261 | 1.4:-58780632 | None:intergenic |
TAGCATGAGTATACTCACCT+TGG | 0.569281 | 1.4:-58780675 | None:intergenic |
TGTGGTAGTACTTATGGTGA+AGG | 0.574977 | 1.4:+58779239 | MS.gene39964:CDS |
TTCTTGCATGCACAAGAGAA+GGG | 0.575717 | 1.4:+58779450 | MS.gene39964:CDS |
TGCTTCTTCATTGAACATTG+TGG | 0.579068 | 1.4:+58780741 | MS.gene39964:CDS |
ATTGAAGACACGTCCGACAA+TGG | 0.579883 | 1.4:+58779499 | MS.gene39964:CDS |
ATGAATACCACAATTTCTTG+CGG | 0.580755 | 1.4:+58780625 | MS.gene39964:CDS |
TTGAAATTCACAGTCCATTG+CGG | 0.581090 | 1.4:+58781238 | MS.gene39964:CDS |
AGAAGATGATGATGCATGCT+GGG | 0.582547 | 1.4:+58779292 | MS.gene39964:CDS |
GGAATTATGTTAACAAGGAA+CGG | 0.587619 | 1.4:+58779783 | MS.gene39964:CDS |
ATCCTCCAACACATGATATG+TGG | 0.588817 | 1.4:-58780776 | None:intergenic |
ATCGAGAAAAGGACGAGATG+GGG | 0.592032 | 1.4:+58779412 | MS.gene39964:CDS |
TCAATTGAAAAGCAATTCCA+AGG | 0.592270 | 1.4:+58780658 | MS.gene39964:CDS |
TGGAAAAGAAGGTGATGGCA+AGG | 0.598389 | 1.4:+58779814 | MS.gene39964:CDS |
TTCAATTGTAGCATTCCTGG+TGG | 0.605671 | 1.4:-58781169 | None:intergenic |
CTACGAGGTTGCTGAAGTAG+CGG | 0.610192 | 1.4:+58781083 | MS.gene39964:CDS |
ATGTGTGTGTGCTCAAGAAA+GGG | 0.610334 | 1.4:+58780921 | MS.gene39964:CDS |
TGCCACATATCATGTGTTGG+AGG | 0.610932 | 1.4:+58780774 | MS.gene39964:CDS |
AATTGAAAGAAGATGGATTG+TGG | 0.618386 | 1.4:+58779552 | MS.gene39964:CDS |
TCTGTTGATGTTGTAAGTGG+TGG | 0.618926 | 1.4:+58781517 | MS.gene39964:CDS |
GGACACCAATTCTGAAAGAG+TGG | 0.620799 | 1.4:+58781459 | MS.gene39964:intron |
AAACGATCCAAACAGAGTGA+TGG | 0.620927 | 1.4:+58781333 | MS.gene39964:CDS |
TACTCATGCTAAATTTAAGG+AGG | 0.627353 | 1.4:+58780687 | MS.gene39964:CDS |
GAGAAAAGGACGAGATGGGG+AGG | 0.628028 | 1.4:+58779415 | MS.gene39964:CDS |
GCAATTGGAAAAGAAGGTGA+TGG | 0.628460 | 1.4:+58779809 | MS.gene39964:CDS |
ACATCTGTTGATGTTGTAAG+TGG | 0.630626 | 1.4:+58781514 | MS.gene39964:CDS |
CAATGATGATGCAGGTGTGA+GGG | 0.635539 | 1.4:+58779685 | MS.gene39964:CDS |
AAATGGACTTGCATGTAAGG+AGG | 0.643265 | 1.4:+58779651 | MS.gene39964:CDS |
CTCTGGTTAAAGATGCAGGA+GGG | 0.643359 | 1.4:+58779726 | MS.gene39964:CDS |
TCAATTGTAGCATTCCTGGT+GGG | 0.645571 | 1.4:-58781168 | None:intergenic |
GGTGACTCAAATCCAAACAA+TGG | 0.647470 | 1.4:+58781213 | MS.gene39964:CDS |
TGTGAGGAATTATGTTAACA+AGG | 0.648059 | 1.4:+58779778 | MS.gene39964:CDS |
TTACTTCTGATTTACCCACC+AGG | 0.655490 | 1.4:+58781154 | MS.gene39964:CDS |
AATTGAAGCCACAAATGGAG+AGG | 0.658436 | 1.4:+58781037 | MS.gene39964:CDS |
TCAATGATGATGCAGGTGTG+AGG | 0.662085 | 1.4:+58779684 | MS.gene39964:CDS |
TTTGCTAGATGCAAGTACAA+TGG | 0.666483 | 1.4:+58781543 | MS.gene39964:CDS |
ATACCAGCCCTAGAAAGGCA+AGG | 0.674438 | 1.4:+58779609 | MS.gene39964:CDS |
TCCAAACAGAGTGATGGCAG+AGG | 0.674903 | 1.4:+58781339 | MS.gene39964:CDS |
GTTATGCAAGCATTTCTACG+AGG | 0.708830 | 1.4:+58781068 | MS.gene39964:CDS |
CATTTAATGAAAGAGATGTG+AGG | 0.724148 | 1.4:+58779762 | MS.gene39964:CDS |
TCTCTGGTTAAAGATGCAGG+AGG | 0.725630 | 1.4:+58779725 | MS.gene39964:CDS |
ACCGATGTAAAATTTCATGG+AGG | 0.733270 | 1.4:-58781131 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTTCTTAAGAAAATATTTTT+GGG | + | chr1.4:58780450-58780469 | MS.gene39964:intron | 15.0% |
!! | AATGTTAAAGAAAGTTTCAA+TGG | + | chr1.4:58781192-58781211 | MS.gene39964:CDS | 20.0% |
!! | GATGGAAGAAAAATATTAAA+AGG | + | chr1.4:58780977-58780996 | MS.gene39964:CDS | 20.0% |
!! | TCTATTTCATAGAAGAAATA+TGG | - | chr1.4:58779878-58779897 | None:intergenic | 20.0% |
!! | TTGACAAAAATAGTTTATCA+AGG | - | chr1.4:58779840-58779859 | None:intergenic | 20.0% |
!! | TTGTAATTACCATGTATATA+TGG | + | chr1.4:58781399-58781418 | MS.gene39964:intron | 20.0% |
!! | TTTCTTCTATGAAATAGATT+TGG | + | chr1.4:58779880-58779899 | MS.gene39964:CDS | 20.0% |
!!! | AAACTATTTTTGTCAAATGA+GGG | + | chr1.4:58779844-58779863 | MS.gene39964:CDS | 20.0% |
!!! | AAATATTTTCTTAAGAAGGT+TGG | - | chr1.4:58780448-58780467 | None:intergenic | 20.0% |
!!! | AAATGATTTAACTTCATCTA+AGG | - | chr1.4:58779345-58779364 | None:intergenic | 20.0% |
!!! | CCAAAAATATTTTCTTAAGA+AGG | - | chr1.4:58780452-58780471 | None:intergenic | 20.0% |
!!! | CCTTCTTAAGAAAATATTTT+TGG | + | chr1.4:58780449-58780468 | MS.gene39964:intron | 20.0% |
!!! | GAAAAACACATATCTATTTT+AGG | - | chr1.4:58779320-58779339 | None:intergenic | 20.0% |
!!! | TAAACTATTTTTGTCAAATG+AGG | + | chr1.4:58779843-58779862 | MS.gene39964:CDS | 20.0% |
! | AATTTGATACAAATCTTAGC+AGG | - | chr1.4:58779536-58779555 | None:intergenic | 25.0% |
! | ATGCAATATCCATATATACA+TGG | - | chr1.4:58781411-58781430 | None:intergenic | 25.0% |
! | GTATACTCATGCTAAATTTA+AGG | + | chr1.4:58780684-58780703 | MS.gene39964:CDS | 25.0% |
! | TAAACCGATGTAAAATTTCA+TGG | - | chr1.4:58781137-58781156 | None:intergenic | 25.0% |
! | TGAATTTCAATACCATTGTT+TGG | - | chr1.4:58781228-58781247 | None:intergenic | 25.0% |
! | TGTATCAAATTGAAAGAAGA+TGG | + | chr1.4:58779545-58779564 | MS.gene39964:CDS | 25.0% |
!! | AAAAGGCATATCATATTTGT+TGG | - | chr1.4:58780008-58780027 | None:intergenic | 25.0% |
!! | ACATTTTTCTTTTTGATGGA+GGG | - | chr1.4:58781281-58781300 | None:intergenic | 25.0% |
!!! | AAAGAGTATGCTTTTAGAAA+GGG | + | chr1.4:58779368-58779387 | MS.gene39964:CDS | 25.0% |
!!! | AATTTAGAGGTATTTTGTGT+CGG | + | chr1.4:58780890-58780909 | MS.gene39964:CDS | 25.0% |
!!! | AGAAGTATGTTTTAACTAGA+TGG | + | chr1.4:58780959-58780978 | MS.gene39964:CDS | 25.0% |
!!! | CATATGATTTTGAAGAGAAA+TGG | + | chr1.4:58780344-58780363 | MS.gene39964:intron | 25.0% |
!!! | TAAAGAGTATGCTTTTAGAA+AGG | + | chr1.4:58779367-58779386 | MS.gene39964:CDS | 25.0% |
!!! | TTAAGAAAATATTTTTGGGC+TGG | + | chr1.4:58780454-58780473 | MS.gene39964:intron | 25.0% |
!!! | TTGTATGGCTTTTTAATTCA+TGG | + | chr1.4:58780110-58780129 | MS.gene39964:intron | 25.0% |
AAGATTAGAACATCGAGAAA+AGG | + | chr1.4:58779401-58779420 | MS.gene39964:CDS | 30.0% | |
AATCAACATTACTTGGATGT+GGG | + | chr1.4:58780059-58780078 | MS.gene39964:intron | 30.0% | |
AGTATACATGCTTTCTTTGA+TGG | + | chr1.4:58780502-58780521 | MS.gene39964:CDS | 30.0% | |
ATGAATACCACAATTTCTTG+CGG | + | chr1.4:58780625-58780644 | MS.gene39964:CDS | 30.0% | |
CATTTAATGAAAGAGATGTG+AGG | + | chr1.4:58779762-58779781 | MS.gene39964:CDS | 30.0% | |
CTAGTTAAAACATACTTCTC+TGG | - | chr1.4:58780958-58780977 | None:intergenic | 30.0% | |
CTCACATCTCTTTCATTAAA+TGG | - | chr1.4:58779764-58779783 | None:intergenic | 30.0% | |
GGAATTATGTTAACAAGGAA+CGG | + | chr1.4:58779783-58779802 | MS.gene39964:CDS | 30.0% | |
GTATAATGAGCGTCATAAAT+GGG | + | chr1.4:58780420-58780439 | MS.gene39964:intron | 30.0% | |
TACTCATGCTAAATTTAAGG+AGG | + | chr1.4:58780687-58780706 | MS.gene39964:CDS | 30.0% | |
TCAATTGAAAAGCAATTCCA+AGG | + | chr1.4:58780658-58780677 | MS.gene39964:CDS | 30.0% | |
TGCTCATTGTTTGAATTTAG+AGG | + | chr1.4:58780877-58780896 | MS.gene39964:CDS | 30.0% | |
TGTATAATGAGCGTCATAAA+TGG | + | chr1.4:58780419-58780438 | MS.gene39964:intron | 30.0% | |
TGTGAGGAATTATGTTAACA+AGG | + | chr1.4:58779778-58779797 | MS.gene39964:CDS | 30.0% | |
TTCTGTTTGTCCAAATTTGT+AGG | + | chr1.4:58781438-58781457 | MS.gene39964:intron | 30.0% | |
! | ACCTCCATGAAATTTTACAT+CGG | + | chr1.4:58781130-58781149 | MS.gene39964:CDS | 30.0% |
! | ATTGAAATCAATGATGATGC+AGG | + | chr1.4:58779677-58779696 | MS.gene39964:CDS | 30.0% |
! | ATTTTCAATTGTAGCATTCC+TGG | - | chr1.4:58781175-58781194 | None:intergenic | 30.0% |
! | GACATTTTTCTTTTTGATGG+AGG | - | chr1.4:58781282-58781301 | None:intergenic | 30.0% |
! | GCAGACATTTTTCTTTTTGA+TGG | - | chr1.4:58781285-58781304 | None:intergenic | 30.0% |
! | TCATGTAAGGAATGTCTTTT+GGG | + | chr1.4:58779913-58779932 | MS.gene39964:intron | 30.0% |
! | TTCATGTAAGGAATGTCTTT+TGG | + | chr1.4:58779912-58779931 | MS.gene39964:intron | 30.0% |
!! | AAGCTCAAATTTTTCGATGA+AGG | - | chr1.4:58780374-58780393 | None:intergenic | 30.0% |
!! | AATTGAAAGAAGATGGATTG+TGG | + | chr1.4:58779552-58779571 | MS.gene39964:CDS | 30.0% |
!!! | CTTTTAGAAAGGGTTTTGAA+TGG | + | chr1.4:58779378-58779397 | MS.gene39964:CDS | 30.0% |
AAAATTGCCGAAAAACTCAG+CGG | + | chr1.4:58780259-58780278 | MS.gene39964:intron | 35.0% | |
ACACCAACAAAAACAGCAAA+AGG | - | chr1.4:58780025-58780044 | None:intergenic | 35.0% | |
ACATCTGTTGATGTTGTAAG+TGG | + | chr1.4:58781514-58781533 | MS.gene39964:CDS | 35.0% | |
ACCGATGTAAAATTTCATGG+AGG | - | chr1.4:58781134-58781153 | None:intergenic | 35.0% | |
AGAGTTTGAAGACACATCTA+AGG | + | chr1.4:58781107-58781126 | MS.gene39964:CDS | 35.0% | |
AGCATTCACAACTAAGATCA+TGG | - | chr1.4:58780861-58780880 | None:intergenic | 35.0% | |
ATTTGCCACTCTTTCAGAAT+TGG | - | chr1.4:58781467-58781486 | None:intergenic | 35.0% | |
CAATCAACATTACTTGGATG+TGG | + | chr1.4:58780058-58780077 | MS.gene39964:intron | 35.0% | |
CAATTGTGTCACACAATAAC+TGG | - | chr1.4:58781022-58781041 | None:intergenic | 35.0% | |
CATGGTCAATCAACATTACT+TGG | + | chr1.4:58780052-58780071 | MS.gene39964:intron | 35.0% | |
GCGGATATGGTGATTATAAA+AGG | + | chr1.4:58780278-58780297 | MS.gene39964:intron | 35.0% | |
GGATAGTTCAAATGTTGTTG+TGG | + | chr1.4:58779214-58779233 | MS.gene39964:CDS | 35.0% | |
TATTGTGACTGACCAATGTA+AGG | + | chr1.4:58780165-58780184 | MS.gene39964:intron | 35.0% | |
TCTTCATTGAACATTGTGGA+GGG | + | chr1.4:58780745-58780764 | MS.gene39964:CDS | 35.0% | |
TGAATACCACAATTTCTTGC+GGG | + | chr1.4:58780626-58780645 | MS.gene39964:CDS | 35.0% | |
TGCTTCTTCATTGAACATTG+TGG | + | chr1.4:58780741-58780760 | MS.gene39964:CDS | 35.0% | |
TTCTTCATTGAACATTGTGG+AGG | + | chr1.4:58780744-58780763 | MS.gene39964:CDS | 35.0% | |
TTGAAATTCACAGTCCATTG+CGG | + | chr1.4:58781238-58781257 | MS.gene39964:CDS | 35.0% | |
TTTGCTAGATGCAAGTACAA+TGG | + | chr1.4:58781543-58781562 | MS.gene39964:CDS | 35.0% | |
! | AGAAAATGGACTTGCATGTA+AGG | + | chr1.4:58779648-58779667 | MS.gene39964:CDS | 35.0% |
! | ATGCAAGTCCATTTTCTTGT+TGG | - | chr1.4:58779645-58779664 | None:intergenic | 35.0% |
! | ATTCTTTTTCTGCTCGACTA+CGG | - | chr1.4:58780585-58780604 | None:intergenic | 35.0% |
! | CAACAAGACTTTTCAATCTC+TGG | + | chr1.4:58779709-58779728 | MS.gene39964:CDS | 35.0% |
! | CAAGTAATGTTGATTGACCA+TGG | - | chr1.4:58780054-58780073 | None:intergenic | 35.0% |
! | CATTTTGCATTGCCTTACAT+TGG | - | chr1.4:58780180-58780199 | None:intergenic | 35.0% |
! | GAATTGGTGTCCTACAAATT+TGG | - | chr1.4:58781451-58781470 | None:intergenic | 35.0% |
! | TATGGTGAAGGTATAGAAGT+TGG | + | chr1.4:58779251-58779270 | MS.gene39964:CDS | 35.0% |
! | TCAAATGTTGTTGTGGATTG+TGG | + | chr1.4:58779221-58779240 | MS.gene39964:CDS | 35.0% |
! | TGGATGACGATTTTCATGTA+AGG | + | chr1.4:58779900-58779919 | MS.gene39964:intron | 35.0% |
! | TTTTTCTTTTTGATGGAGGG+CGG | - | chr1.4:58781278-58781297 | None:intergenic | 35.0% |
!!! | ATGCCTTTTGCTGTTTTTGT+TGG | + | chr1.4:58780019-58780038 | MS.gene39964:intron | 35.0% |
!!! | GGACAATTTTTTCCCATTGT+CGG | - | chr1.4:58779515-58779534 | None:intergenic | 35.0% |
AAACGATCCAAACAGAGTGA+TGG | + | chr1.4:58781333-58781352 | MS.gene39964:CDS | 40.0% | |
AAGACACAGAGTCGTTTGTA+TGG | + | chr1.4:58780095-58780114 | MS.gene39964:intron | 40.0% | |
AATTGAAGCCACAAATGGAG+AGG | + | chr1.4:58781037-58781056 | MS.gene39964:CDS | 40.0% | |
ATCCTCCAACACATGATATG+TGG | - | chr1.4:58780779-58780798 | None:intergenic | 40.0% | |
ATGTGTGTGTGCTCAAGAAA+GGG | + | chr1.4:58780921-58780940 | MS.gene39964:CDS | 40.0% | |
ATTCTTGCATGCACAAGAGA+AGG | + | chr1.4:58779449-58779468 | MS.gene39964:CDS | 40.0% | |
CAATCTCTGGTTAAAGATGC+AGG | + | chr1.4:58779722-58779741 | MS.gene39964:CDS | 40.0% | |
CTCTGTTTGGATCGTTTACT+TGG | - | chr1.4:58781330-58781349 | None:intergenic | 40.0% | |
CTGGTATGATGAGAATGATC+AGG | - | chr1.4:58779596-58779615 | None:intergenic | 40.0% | |
CTTTGCCACATATCATGTGT+TGG | + | chr1.4:58780771-58780790 | MS.gene39964:CDS | 40.0% | |
GACACAATTGAAGCCACAAA+TGG | + | chr1.4:58781032-58781051 | MS.gene39964:CDS | 40.0% | |
GCAATTGGAAAAGAAGGTGA+TGG | + | chr1.4:58779809-58779828 | MS.gene39964:CDS | 40.0% | |
GGTGACTCAAATCCAAACAA+TGG | + | chr1.4:58781213-58781232 | MS.gene39964:CDS | 40.0% | |
GTTATGCAAGCATTTCTACG+AGG | + | chr1.4:58781068-58781087 | MS.gene39964:CDS | 40.0% | |
GTTCAAGGCCAACAAGAAAA+TGG | + | chr1.4:58779634-58779653 | MS.gene39964:CDS | 40.0% | |
TAGAAAGGCAAGGTTGTTCA+AGG | + | chr1.4:58779619-58779638 | MS.gene39964:CDS | 40.0% | |
TAGCATGAGTATACTCACCT+TGG | - | chr1.4:58780678-58780697 | None:intergenic | 40.0% | |
TATGTGTGTGTGCTCAAGAA+AGG | + | chr1.4:58780920-58780939 | MS.gene39964:CDS | 40.0% | |
TCAATTGTAGCATTCCTGGT+GGG | - | chr1.4:58781171-58781190 | None:intergenic | 40.0% | |
TCTGTTGATGTTGTAAGTGG+TGG | + | chr1.4:58781517-58781536 | MS.gene39964:CDS | 40.0% | |
TGAAATTCACAGTCCATTGC+GGG | + | chr1.4:58781239-58781258 | MS.gene39964:CDS | 40.0% | |
TGAACAACCTTGCCTTTCTA+GGG | - | chr1.4:58779619-58779638 | None:intergenic | 40.0% | |
TGTGGTAGTACTTATGGTGA+AGG | + | chr1.4:58779239-58779258 | MS.gene39964:CDS | 40.0% | |
TTACTTCTGATTTACCCACC+AGG | + | chr1.4:58781154-58781173 | MS.gene39964:CDS | 40.0% | |
TTCAATTGTAGCATTCCTGG+TGG | - | chr1.4:58781172-58781191 | None:intergenic | 40.0% | |
TTCTTGCATGCACAAGAGAA+GGG | + | chr1.4:58779450-58779469 | MS.gene39964:CDS | 40.0% | |
TTGAACAACCTTGCCTTTCT+AGG | - | chr1.4:58779620-58779639 | None:intergenic | 40.0% | |
TTGAGCTTCAGCAGAATCAT+TGG | + | chr1.4:58780386-58780405 | MS.gene39964:intron | 40.0% | |
TTGTCAAACCTCTCCATTTG+TGG | - | chr1.4:58781048-58781067 | None:intergenic | 40.0% | |
TTTGTTGGTGTGAATCACCA+TGG | + | chr1.4:58780034-58780053 | MS.gene39964:intron | 40.0% | |
! | AAATGGACTTGCATGTAAGG+AGG | + | chr1.4:58779651-58779670 | MS.gene39964:CDS | 40.0% |
! | AAGAAGATGATGATGCATGC+TGG | + | chr1.4:58779291-58779310 | MS.gene39964:CDS | 40.0% |
! | ACCATATCCGCTGAGTTTTT+CGG | - | chr1.4:58780269-58780288 | None:intergenic | 40.0% |
! | AGAAGATGATGATGCATGCT+GGG | + | chr1.4:58779292-58779311 | MS.gene39964:CDS | 40.0% |
! | AGCAGAATCATTGGTTGACT+GGG | + | chr1.4:58780395-58780414 | MS.gene39964:intron | 40.0% |
! | AGGGCTGCTTATGAGTATTT+TGG | + | chr1.4:58779950-58779969 | MS.gene39964:intron | 40.0% |
! | GTGGATTGTGGTAGTACTTA+TGG | + | chr1.4:58779233-58779252 | MS.gene39964:CDS | 40.0% |
ACATCGAGAAAAGGACGAGA+TGG | + | chr1.4:58779410-58779429 | MS.gene39964:CDS | 45.0% | |
ATCGAGAAAAGGACGAGATG+GGG | + | chr1.4:58779412-58779431 | MS.gene39964:CDS | 45.0% | |
ATTGAAGACACGTCCGACAA+TGG | + | chr1.4:58779499-58779518 | MS.gene39964:CDS | 45.0% | |
CATCGAGAAAAGGACGAGAT+GGG | + | chr1.4:58779411-58779430 | MS.gene39964:CDS | 45.0% | |
CCTTTACGTTTAACCCGCAA+TGG | - | chr1.4:58781255-58781274 | None:intergenic | 45.0% | |
CTCTGGTTAAAGATGCAGGA+GGG | + | chr1.4:58779726-58779745 | MS.gene39964:CDS | 45.0% | |
GGCAATGCAAAATGCAATCG+AGG | + | chr1.4:58780186-58780205 | MS.gene39964:intron | 45.0% | |
GGTCAGTCACAATACCAACA+GGG | - | chr1.4:58780159-58780178 | None:intergenic | 45.0% | |
GTCAGTCACAATACCAACAG+GGG | - | chr1.4:58780158-58780177 | None:intergenic | 45.0% | |
GTGTTGGAGGATGTGTTAGT+TGG | + | chr1.4:58780787-58780806 | MS.gene39964:CDS | 45.0% | |
GTTTGACCCGCAAGAAATTG+TGG | - | chr1.4:58780635-58780654 | None:intergenic | 45.0% | |
TATGCCATAAACACCACCTG+TGG | - | chr1.4:58780231-58780250 | None:intergenic | 45.0% | |
TCAGTCACAATACCAACAGG+GGG | - | chr1.4:58780157-58780176 | None:intergenic | 45.0% | |
TCATCATACCAGCCCTAGAA+AGG | + | chr1.4:58779604-58779623 | MS.gene39964:CDS | 45.0% | |
TCATGGCTTCGTTGTATGCT+GGG | + | chr1.4:58780127-58780146 | MS.gene39964:intron | 45.0% | |
TCTCTGGTTAAAGATGCAGG+AGG | + | chr1.4:58779725-58779744 | MS.gene39964:CDS | 45.0% | |
TGCCACATATCATGTGTTGG+AGG | + | chr1.4:58780774-58780793 | MS.gene39964:CDS | 45.0% | |
TGGTCAGTCACAATACCAAC+AGG | - | chr1.4:58780160-58780179 | None:intergenic | 45.0% | |
TTCATGGCTTCGTTGTATGC+TGG | + | chr1.4:58780126-58780145 | MS.gene39964:intron | 45.0% | |
TTGAAGACACGTCCGACAAT+GGG | + | chr1.4:58779500-58779519 | MS.gene39964:CDS | 45.0% | |
TTGGGCTGATGCAAGAAGTA+GGG | + | chr1.4:58779931-58779950 | MS.gene39964:intron | 45.0% | |
TTTGGGCTGATGCAAGAAGT+AGG | + | chr1.4:58779930-58779949 | MS.gene39964:intron | 45.0% | |
! | CAATGATGATGCAGGTGTGA+GGG | + | chr1.4:58779685-58779704 | MS.gene39964:CDS | 45.0% |
! | CAGCAGAATCATTGGTTGAC+TGG | + | chr1.4:58780394-58780413 | MS.gene39964:intron | 45.0% |
! | CCATTGCGGGTTAAACGTAA+AGG | + | chr1.4:58781252-58781271 | MS.gene39964:CDS | 45.0% |
! | GGACACCAATTCTGAAAGAG+TGG | + | chr1.4:58781459-58781478 | MS.gene39964:intron | 45.0% |
! | TCAATGATGATGCAGGTGTG+AGG | + | chr1.4:58779684-58779703 | MS.gene39964:CDS | 45.0% |
! | TGGAAAAGAAGGTGATGGCA+AGG | + | chr1.4:58779814-58779833 | MS.gene39964:CDS | 45.0% |
AACAAGGAACGGCGTGCAAT+TGG | + | chr1.4:58779794-58779813 | MS.gene39964:CDS | 50.0% | |
ATACCAGCCCTAGAAAGGCA+AGG | + | chr1.4:58779609-58779628 | MS.gene39964:CDS | 50.0% | |
CGGCGTGCAATTGGAAAAGA+AGG | + | chr1.4:58779803-58779822 | MS.gene39964:CDS | 50.0% | |
CTACGAGGTTGCTGAAGTAG+CGG | + | chr1.4:58781083-58781102 | MS.gene39964:CDS | 50.0% | |
GCCGAAAAACTCAGCGGATA+TGG | + | chr1.4:58780265-58780284 | MS.gene39964:intron | 50.0% | |
TCCAAACAGAGTGATGGCAG+AGG | + | chr1.4:58781339-58781358 | MS.gene39964:CDS | 50.0% | |
TCCTCTGCCATCACTCTGTT+TGG | - | chr1.4:58781343-58781362 | None:intergenic | 50.0% | |
! | CTTGGATGTGGGTTGCTATC+AGG | + | chr1.4:58780070-58780089 | MS.gene39964:intron | 50.0% |
! | TTTTCCCTACAACTCGCCAC+AGG | + | chr1.4:58780212-58780231 | MS.gene39964:intron | 50.0% |
ACCACCTGTGGCGAGTTGTA+GGG | - | chr1.4:58780219-58780238 | None:intergenic | 55.0% | |
CTCGCCACAGGTGGTGTTTA+TGG | + | chr1.4:58780224-58780243 | MS.gene39964:intron | 55.0% | |
GAGAAAAGGACGAGATGGGG+AGG | + | chr1.4:58779415-58779434 | MS.gene39964:CDS | 55.0% | |
!! | CAACCTTGCCTTTCTAGGGC+TGG | - | chr1.4:58779615-58779634 | None:intergenic | 55.0% |
ATGCTGGGAAAGCCCCCTGT+TGG | + | chr1.4:58780142-58780161 | MS.gene39964:intron | 60.0% | |
CACCACCTGTGGCGAGTTGT+AGG | - | chr1.4:58780220-58780239 | None:intergenic | 60.0% | |
TCCCTACAACTCGCCACAGG+TGG | + | chr1.4:58780215-58780234 | MS.gene39964:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 58779212 | 58781576 | 58779212 | ID=MS.gene39964 |
chr1.4 | mRNA | 58779212 | 58781576 | 58779212 | ID=MS.gene39964.t1;Parent=MS.gene39964 |
chr1.4 | exon | 58779212 | 58779916 | 58779212 | ID=MS.gene39964.t1.exon1;Parent=MS.gene39964.t1 |
chr1.4 | CDS | 58779212 | 58779916 | 58779212 | ID=cds.MS.gene39964.t1;Parent=MS.gene39964.t1 |
chr1.4 | exon | 58780493 | 58781368 | 58780493 | ID=MS.gene39964.t1.exon2;Parent=MS.gene39964.t1 |
chr1.4 | CDS | 58780493 | 58781368 | 58780493 | ID=cds.MS.gene39964.t1;Parent=MS.gene39964.t1 |
chr1.4 | exon | 58781460 | 58781576 | 58781460 | ID=MS.gene39964.t1.exon3;Parent=MS.gene39964.t1 |
chr1.4 | CDS | 58781460 | 58781576 | 58781460 | ID=cds.MS.gene39964.t1;Parent=MS.gene39964.t1 |
Gene Sequence |
Protein sequence |