AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39964


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39964.t1 MTR_0856s0010 78.395 162 33 1 1 162 1 160 2.69e-90 275
MS.gene39964.t1 MTR_7g115320 56.164 73 29 1 123 195 6 75 9.03e-21 87.4
MS.gene39964.t1 MTR_1g008290 34.328 134 85 1 96 229 14 144 2.21e-19 85.5
MS.gene39964.t1 MTR_7g446060 40.449 89 51 1 111 199 1 87 1.97e-16 76.6
MS.gene39964.t1 MTR_7g074790 25.444 169 105 2 34 199 8 158 7.89e-14 71.6
MS.gene39964.t1 MTR_6g051425 24.272 206 128 4 46 233 27 222 9.25e-14 73.2
MS.gene39964.t1 MTR_0558s0020 23.810 273 165 9 19 254 9 275 2.78e-13 71.2
MS.gene39964.t1 MTR_5g039760 28.061 196 115 4 34 226 8 180 4.01e-13 68.6
MS.gene39964.t1 MTR_1g083640 23.881 268 161 9 19 249 24 285 4.15e-13 70.5
MS.gene39964.t1 MTR_1g013060 22.642 212 154 4 31 233 19 229 2.00e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39964.t1 AT4G38180 38.889 180 102 3 224 403 463 634 1.58e-29 124
MS.gene39964.t1 AT4G38180 26.335 281 188 8 15 281 47 322 2.86e-18 89.4
MS.gene39964.t1 AT3G22170 30.380 237 153 3 206 440 425 651 9.56e-27 115
MS.gene39964.t1 AT3G22170 24.898 245 144 5 5 233 41 261 1.20e-11 68.2
MS.gene39964.t1 AT3G22170 30.380 237 153 3 206 440 425 651 9.56e-27 115
MS.gene39964.t1 AT3G22170 24.898 245 144 5 5 233 41 261 1.20e-11 68.2
MS.gene39964.t1 AT4G15090 32.512 203 128 2 235 437 447 640 1.08e-26 115
MS.gene39964.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.50e-22 102
MS.gene39964.t1 AT4G15090 32.512 203 128 2 235 437 447 640 1.08e-26 115
MS.gene39964.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.50e-22 102
MS.gene39964.t1 AT4G15090 32.512 203 128 2 235 437 447 640 1.08e-26 115
MS.gene39964.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.50e-22 102
MS.gene39964.t1 AT4G15090 32.512 203 128 2 235 437 447 640 1.08e-26 115
MS.gene39964.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.50e-22 102
MS.gene39964.t1 AT4G15090 32.512 203 128 2 235 437 447 640 1.08e-26 115
MS.gene39964.t1 AT4G15090 31.780 236 153 6 5 233 18 252 1.50e-22 102
MS.gene39964.t1 AT1G52520 31.250 224 149 4 235 454 467 689 1.01e-24 109
MS.gene39964.t1 AT1G52520 25.871 201 135 6 36 233 85 274 4.64e-11 66.2
MS.gene39964.t1 AT4G38170 33.333 171 109 2 237 407 238 403 6.81e-24 105
MS.gene39964.t1 AT2G32250 31.197 234 150 4 222 453 335 559 1.67e-23 105
MS.gene39964.t1 AT2G32250 31.197 234 150 4 222 453 376 600 1.72e-23 105
MS.gene39964.t1 AT2G32250 31.197 234 150 4 222 453 376 600 1.72e-23 105
MS.gene39964.t1 AT2G32250 31.197 234 150 4 222 453 376 600 1.72e-23 105
MS.gene39964.t1 AT2G32250 31.197 234 150 4 222 453 376 600 1.87e-23 105
MS.gene39964.t1 AT2G32250 31.197 234 150 4 222 453 376 600 1.87e-23 105
MS.gene39964.t1 AT2G32250 31.197 234 150 4 222 453 335 559 1.95e-23 105
MS.gene39964.t1 AT2G32250 31.197 234 150 4 222 453 376 600 2.12e-23 105
MS.gene39964.t1 AT1G76320 31.795 195 122 3 236 430 385 568 3.19e-22 101
MS.gene39964.t1 AT1G76320 30.102 196 128 4 40 233 1 189 1.06e-18 90.5
MS.gene39964.t1 AT1G76320 31.795 195 122 3 236 430 385 568 3.40e-22 101
MS.gene39964.t1 AT1G76320 30.102 196 128 4 40 233 1 189 1.07e-18 90.5
MS.gene39964.t1 AT1G76320 31.795 195 122 3 236 430 385 568 3.40e-22 101
MS.gene39964.t1 AT1G76320 30.102 196 128 4 40 233 1 189 1.07e-18 90.5
MS.gene39964.t1 AT1G76320 31.795 195 122 3 236 430 385 568 3.49e-22 101
MS.gene39964.t1 AT1G76320 30.102 196 128 4 40 233 1 189 1.46e-18 90.1
MS.gene39964.t1 AT2G27110 30.049 203 128 5 242 440 278 470 1.08e-18 90.5
MS.gene39964.t1 AT2G27110 30.049 203 128 5 242 440 423 615 1.12e-18 90.5
MS.gene39964.t1 AT2G27110 30.049 203 128 5 242 440 423 615 1.12e-18 90.5
MS.gene39964.t1 AT3G06250 32.022 178 110 3 224 401 536 702 5.88e-18 88.2
MS.gene39964.t1 AT3G06250 32.022 178 110 3 224 401 536 702 5.88e-18 88.2
MS.gene39964.t1 AT3G06250 32.022 178 110 3 224 401 536 702 5.88e-18 88.2
MS.gene39964.t1 AT5G18960 31.902 163 106 2 239 401 569 726 9.28e-17 84.3
MS.gene39964.t1 AT5G18960 31.902 163 106 2 239 401 569 726 9.28e-17 84.3
MS.gene39964.t1 AT4G19990 30.256 195 130 2 235 429 338 526 3.04e-16 82.8
MS.gene39964.t1 AT4G19990 30.256 195 130 2 235 429 395 583 3.18e-16 82.8
MS.gene39964.t1 AT4G19990 30.256 195 130 2 235 429 395 583 3.18e-16 82.8
MS.gene39964.t1 AT4G19990 30.256 195 130 2 235 429 395 583 3.56e-16 82.4
MS.gene39964.t1 AT4G19990 30.256 195 130 2 235 429 409 597 4.04e-16 82.4
MS.gene39964.t1 AT4G19990 30.256 195 130 2 235 429 395 583 4.44e-16 82.4
MS.gene39964.t1 AT4G19990 30.256 195 130 2 235 429 395 583 4.44e-16 82.4
MS.gene39964.t1 AT1G80010 26.347 167 117 3 244 407 502 665 5.62e-13 72.4

Find 94 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCACATCTCTTTCATTAAA+TGG 0.113358 1.4:-58779761 None:intergenic
TTGAACAACCTTGCCTTTCT+AGG 0.211285 1.4:-58779617 None:intergenic
TCTATTTCATAGAAGAAATA+TGG 0.239499 1.4:-58779875 None:intergenic
GTATACTCATGCTAAATTTA+AGG 0.258580 1.4:+58780684 MS.gene39964:CDS
AGTATACATGCTTTCTTTGA+TGG 0.267857 1.4:+58780502 MS.gene39964:CDS
TGCTCATTGTTTGAATTTAG+AGG 0.299376 1.4:+58780877 MS.gene39964:CDS
CTCTGTTTGGATCGTTTACT+TGG 0.304558 1.4:-58781327 None:intergenic
TTTCTTCTATGAAATAGATT+TGG 0.314992 1.4:+58779880 MS.gene39964:CDS
TCCTCTGCCATCACTCTGTT+TGG 0.325597 1.4:-58781340 None:intergenic
GTGGATTGTGGTAGTACTTA+TGG 0.331695 1.4:+58779233 MS.gene39964:CDS
AAATGATTTAACTTCATCTA+AGG 0.332045 1.4:-58779342 None:intergenic
TGAATTTCAATACCATTGTT+TGG 0.340625 1.4:-58781225 None:intergenic
ATTTGCCACTCTTTCAGAAT+TGG 0.355554 1.4:-58781464 None:intergenic
GTTCAAGGCCAACAAGAAAA+TGG 0.356488 1.4:+58779634 MS.gene39964:CDS
CAATTGTGTCACACAATAAC+TGG 0.362060 1.4:-58781019 None:intergenic
TGAAATTCACAGTCCATTGC+GGG 0.380283 1.4:+58781239 MS.gene39964:CDS
TGTATCAAATTGAAAGAAGA+TGG 0.385199 1.4:+58779545 MS.gene39964:CDS
TTGTCAAACCTCTCCATTTG+TGG 0.385569 1.4:-58781045 None:intergenic
AACAAGGAACGGCGTGCAAT+TGG 0.405287 1.4:+58779794 MS.gene39964:CDS
TGAATACCACAATTTCTTGC+GGG 0.415845 1.4:+58780626 MS.gene39964:CDS
TAAACCGATGTAAAATTTCA+TGG 0.416870 1.4:-58781134 None:intergenic
AATGTTAAAGAAAGTTTCAA+TGG 0.418875 1.4:+58781192 MS.gene39964:CDS
CAATCTCTGGTTAAAGATGC+AGG 0.432888 1.4:+58779722 MS.gene39964:CDS
TGAACAACCTTGCCTTTCTA+GGG 0.439320 1.4:-58779616 None:intergenic
AGAAAATGGACTTGCATGTA+AGG 0.444990 1.4:+58779648 MS.gene39964:CDS
CTAGTTAAAACATACTTCTC+TGG 0.462491 1.4:-58780955 None:intergenic
CAACCTTGCCTTTCTAGGGC+TGG 0.475224 1.4:-58779612 None:intergenic
TTGAAGACACGTCCGACAAT+GGG 0.482433 1.4:+58779500 MS.gene39964:CDS
AATTTGATACAAATCTTAGC+AGG 0.483019 1.4:-58779533 None:intergenic
CCTTTACGTTTAACCCGCAA+TGG 0.484773 1.4:-58781252 None:intergenic
AGCATTCACAACTAAGATCA+TGG 0.486727 1.4:-58780858 None:intergenic
TAGAAAGGCAAGGTTGTTCA+AGG 0.489258 1.4:+58779619 MS.gene39964:CDS
AGAGTTTGAAGACACATCTA+AGG 0.494136 1.4:+58781107 MS.gene39964:CDS
TCATCATACCAGCCCTAGAA+AGG 0.496553 1.4:+58779604 MS.gene39964:CDS
ATTCTTGCATGCACAAGAGA+AGG 0.499742 1.4:+58779449 MS.gene39964:CDS
AAGATTAGAACATCGAGAAA+AGG 0.502639 1.4:+58779401 MS.gene39964:CDS
TTCTTCATTGAACATTGTGG+AGG 0.503706 1.4:+58780744 MS.gene39964:CDS
GACACAATTGAAGCCACAAA+TGG 0.507144 1.4:+58781032 MS.gene39964:CDS
TCAAATGTTGTTGTGGATTG+TGG 0.509257 1.4:+58779221 MS.gene39964:CDS
CTGGTATGATGAGAATGATC+AGG 0.514347 1.4:-58779593 None:intergenic
TCTTCATTGAACATTGTGGA+GGG 0.515757 1.4:+58780745 MS.gene39964:CDS
CGGCGTGCAATTGGAAAAGA+AGG 0.518535 1.4:+58779803 MS.gene39964:CDS
CATCGAGAAAAGGACGAGAT+GGG 0.520186 1.4:+58779411 MS.gene39964:CDS
AAGAAGATGATGATGCATGC+TGG 0.530084 1.4:+58779291 MS.gene39964:CDS
TATGTGTGTGTGCTCAAGAA+AGG 0.531946 1.4:+58780920 MS.gene39964:CDS
TATGGTGAAGGTATAGAAGT+TGG 0.532672 1.4:+58779251 MS.gene39964:CDS
CTTTGCCACATATCATGTGT+TGG 0.534557 1.4:+58780771 MS.gene39964:CDS
ACATCGAGAAAAGGACGAGA+TGG 0.535829 1.4:+58779410 MS.gene39964:CDS
GGATAGTTCAAATGTTGTTG+TGG 0.550233 1.4:+58779214 MS.gene39964:CDS
GTGTTGGAGGATGTGTTAGT+TGG 0.553858 1.4:+58780787 MS.gene39964:CDS
ATTGAAATCAATGATGATGC+AGG 0.561814 1.4:+58779677 MS.gene39964:CDS
CCATTGCGGGTTAAACGTAA+AGG 0.562059 1.4:+58781252 MS.gene39964:CDS
GTTTGACCCGCAAGAAATTG+TGG 0.569261 1.4:-58780632 None:intergenic
TAGCATGAGTATACTCACCT+TGG 0.569281 1.4:-58780675 None:intergenic
TGTGGTAGTACTTATGGTGA+AGG 0.574977 1.4:+58779239 MS.gene39964:CDS
TTCTTGCATGCACAAGAGAA+GGG 0.575717 1.4:+58779450 MS.gene39964:CDS
TGCTTCTTCATTGAACATTG+TGG 0.579068 1.4:+58780741 MS.gene39964:CDS
ATTGAAGACACGTCCGACAA+TGG 0.579883 1.4:+58779499 MS.gene39964:CDS
ATGAATACCACAATTTCTTG+CGG 0.580755 1.4:+58780625 MS.gene39964:CDS
TTGAAATTCACAGTCCATTG+CGG 0.581090 1.4:+58781238 MS.gene39964:CDS
AGAAGATGATGATGCATGCT+GGG 0.582547 1.4:+58779292 MS.gene39964:CDS
GGAATTATGTTAACAAGGAA+CGG 0.587619 1.4:+58779783 MS.gene39964:CDS
ATCCTCCAACACATGATATG+TGG 0.588817 1.4:-58780776 None:intergenic
ATCGAGAAAAGGACGAGATG+GGG 0.592032 1.4:+58779412 MS.gene39964:CDS
TCAATTGAAAAGCAATTCCA+AGG 0.592270 1.4:+58780658 MS.gene39964:CDS
TGGAAAAGAAGGTGATGGCA+AGG 0.598389 1.4:+58779814 MS.gene39964:CDS
TTCAATTGTAGCATTCCTGG+TGG 0.605671 1.4:-58781169 None:intergenic
CTACGAGGTTGCTGAAGTAG+CGG 0.610192 1.4:+58781083 MS.gene39964:CDS
ATGTGTGTGTGCTCAAGAAA+GGG 0.610334 1.4:+58780921 MS.gene39964:CDS
TGCCACATATCATGTGTTGG+AGG 0.610932 1.4:+58780774 MS.gene39964:CDS
AATTGAAAGAAGATGGATTG+TGG 0.618386 1.4:+58779552 MS.gene39964:CDS
TCTGTTGATGTTGTAAGTGG+TGG 0.618926 1.4:+58781517 MS.gene39964:CDS
GGACACCAATTCTGAAAGAG+TGG 0.620799 1.4:+58781459 MS.gene39964:intron
AAACGATCCAAACAGAGTGA+TGG 0.620927 1.4:+58781333 MS.gene39964:CDS
TACTCATGCTAAATTTAAGG+AGG 0.627353 1.4:+58780687 MS.gene39964:CDS
GAGAAAAGGACGAGATGGGG+AGG 0.628028 1.4:+58779415 MS.gene39964:CDS
GCAATTGGAAAAGAAGGTGA+TGG 0.628460 1.4:+58779809 MS.gene39964:CDS
ACATCTGTTGATGTTGTAAG+TGG 0.630626 1.4:+58781514 MS.gene39964:CDS
CAATGATGATGCAGGTGTGA+GGG 0.635539 1.4:+58779685 MS.gene39964:CDS
AAATGGACTTGCATGTAAGG+AGG 0.643265 1.4:+58779651 MS.gene39964:CDS
CTCTGGTTAAAGATGCAGGA+GGG 0.643359 1.4:+58779726 MS.gene39964:CDS
TCAATTGTAGCATTCCTGGT+GGG 0.645571 1.4:-58781168 None:intergenic
GGTGACTCAAATCCAAACAA+TGG 0.647470 1.4:+58781213 MS.gene39964:CDS
TGTGAGGAATTATGTTAACA+AGG 0.648059 1.4:+58779778 MS.gene39964:CDS
TTACTTCTGATTTACCCACC+AGG 0.655490 1.4:+58781154 MS.gene39964:CDS
AATTGAAGCCACAAATGGAG+AGG 0.658436 1.4:+58781037 MS.gene39964:CDS
TCAATGATGATGCAGGTGTG+AGG 0.662085 1.4:+58779684 MS.gene39964:CDS
TTTGCTAGATGCAAGTACAA+TGG 0.666483 1.4:+58781543 MS.gene39964:CDS
ATACCAGCCCTAGAAAGGCA+AGG 0.674438 1.4:+58779609 MS.gene39964:CDS
TCCAAACAGAGTGATGGCAG+AGG 0.674903 1.4:+58781339 MS.gene39964:CDS
GTTATGCAAGCATTTCTACG+AGG 0.708830 1.4:+58781068 MS.gene39964:CDS
CATTTAATGAAAGAGATGTG+AGG 0.724148 1.4:+58779762 MS.gene39964:CDS
TCTCTGGTTAAAGATGCAGG+AGG 0.725630 1.4:+58779725 MS.gene39964:CDS
ACCGATGTAAAATTTCATGG+AGG 0.733270 1.4:-58781131 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTCTTAAGAAAATATTTTT+GGG + chr1.4:58780450-58780469 MS.gene39964:intron 15.0%
!! AATGTTAAAGAAAGTTTCAA+TGG + chr1.4:58781192-58781211 MS.gene39964:CDS 20.0%
!! GATGGAAGAAAAATATTAAA+AGG + chr1.4:58780977-58780996 MS.gene39964:CDS 20.0%
!! TCTATTTCATAGAAGAAATA+TGG - chr1.4:58779878-58779897 None:intergenic 20.0%
!! TTGACAAAAATAGTTTATCA+AGG - chr1.4:58779840-58779859 None:intergenic 20.0%
!! TTGTAATTACCATGTATATA+TGG + chr1.4:58781399-58781418 MS.gene39964:intron 20.0%
!! TTTCTTCTATGAAATAGATT+TGG + chr1.4:58779880-58779899 MS.gene39964:CDS 20.0%
!!! AAACTATTTTTGTCAAATGA+GGG + chr1.4:58779844-58779863 MS.gene39964:CDS 20.0%
!!! AAATATTTTCTTAAGAAGGT+TGG - chr1.4:58780448-58780467 None:intergenic 20.0%
!!! AAATGATTTAACTTCATCTA+AGG - chr1.4:58779345-58779364 None:intergenic 20.0%
!!! CCAAAAATATTTTCTTAAGA+AGG - chr1.4:58780452-58780471 None:intergenic 20.0%
!!! CCTTCTTAAGAAAATATTTT+TGG + chr1.4:58780449-58780468 MS.gene39964:intron 20.0%
!!! GAAAAACACATATCTATTTT+AGG - chr1.4:58779320-58779339 None:intergenic 20.0%
!!! TAAACTATTTTTGTCAAATG+AGG + chr1.4:58779843-58779862 MS.gene39964:CDS 20.0%
! AATTTGATACAAATCTTAGC+AGG - chr1.4:58779536-58779555 None:intergenic 25.0%
! ATGCAATATCCATATATACA+TGG - chr1.4:58781411-58781430 None:intergenic 25.0%
! GTATACTCATGCTAAATTTA+AGG + chr1.4:58780684-58780703 MS.gene39964:CDS 25.0%
! TAAACCGATGTAAAATTTCA+TGG - chr1.4:58781137-58781156 None:intergenic 25.0%
! TGAATTTCAATACCATTGTT+TGG - chr1.4:58781228-58781247 None:intergenic 25.0%
! TGTATCAAATTGAAAGAAGA+TGG + chr1.4:58779545-58779564 MS.gene39964:CDS 25.0%
!! AAAAGGCATATCATATTTGT+TGG - chr1.4:58780008-58780027 None:intergenic 25.0%
!! ACATTTTTCTTTTTGATGGA+GGG - chr1.4:58781281-58781300 None:intergenic 25.0%
!!! AAAGAGTATGCTTTTAGAAA+GGG + chr1.4:58779368-58779387 MS.gene39964:CDS 25.0%
!!! AATTTAGAGGTATTTTGTGT+CGG + chr1.4:58780890-58780909 MS.gene39964:CDS 25.0%
!!! AGAAGTATGTTTTAACTAGA+TGG + chr1.4:58780959-58780978 MS.gene39964:CDS 25.0%
!!! CATATGATTTTGAAGAGAAA+TGG + chr1.4:58780344-58780363 MS.gene39964:intron 25.0%
!!! TAAAGAGTATGCTTTTAGAA+AGG + chr1.4:58779367-58779386 MS.gene39964:CDS 25.0%
!!! TTAAGAAAATATTTTTGGGC+TGG + chr1.4:58780454-58780473 MS.gene39964:intron 25.0%
!!! TTGTATGGCTTTTTAATTCA+TGG + chr1.4:58780110-58780129 MS.gene39964:intron 25.0%
AAGATTAGAACATCGAGAAA+AGG + chr1.4:58779401-58779420 MS.gene39964:CDS 30.0%
AATCAACATTACTTGGATGT+GGG + chr1.4:58780059-58780078 MS.gene39964:intron 30.0%
AGTATACATGCTTTCTTTGA+TGG + chr1.4:58780502-58780521 MS.gene39964:CDS 30.0%
ATGAATACCACAATTTCTTG+CGG + chr1.4:58780625-58780644 MS.gene39964:CDS 30.0%
CATTTAATGAAAGAGATGTG+AGG + chr1.4:58779762-58779781 MS.gene39964:CDS 30.0%
CTAGTTAAAACATACTTCTC+TGG - chr1.4:58780958-58780977 None:intergenic 30.0%
CTCACATCTCTTTCATTAAA+TGG - chr1.4:58779764-58779783 None:intergenic 30.0%
GGAATTATGTTAACAAGGAA+CGG + chr1.4:58779783-58779802 MS.gene39964:CDS 30.0%
GTATAATGAGCGTCATAAAT+GGG + chr1.4:58780420-58780439 MS.gene39964:intron 30.0%
TACTCATGCTAAATTTAAGG+AGG + chr1.4:58780687-58780706 MS.gene39964:CDS 30.0%
TCAATTGAAAAGCAATTCCA+AGG + chr1.4:58780658-58780677 MS.gene39964:CDS 30.0%
TGCTCATTGTTTGAATTTAG+AGG + chr1.4:58780877-58780896 MS.gene39964:CDS 30.0%
TGTATAATGAGCGTCATAAA+TGG + chr1.4:58780419-58780438 MS.gene39964:intron 30.0%
TGTGAGGAATTATGTTAACA+AGG + chr1.4:58779778-58779797 MS.gene39964:CDS 30.0%
TTCTGTTTGTCCAAATTTGT+AGG + chr1.4:58781438-58781457 MS.gene39964:intron 30.0%
! ACCTCCATGAAATTTTACAT+CGG + chr1.4:58781130-58781149 MS.gene39964:CDS 30.0%
! ATTGAAATCAATGATGATGC+AGG + chr1.4:58779677-58779696 MS.gene39964:CDS 30.0%
! ATTTTCAATTGTAGCATTCC+TGG - chr1.4:58781175-58781194 None:intergenic 30.0%
! GACATTTTTCTTTTTGATGG+AGG - chr1.4:58781282-58781301 None:intergenic 30.0%
! GCAGACATTTTTCTTTTTGA+TGG - chr1.4:58781285-58781304 None:intergenic 30.0%
! TCATGTAAGGAATGTCTTTT+GGG + chr1.4:58779913-58779932 MS.gene39964:intron 30.0%
! TTCATGTAAGGAATGTCTTT+TGG + chr1.4:58779912-58779931 MS.gene39964:intron 30.0%
!! AAGCTCAAATTTTTCGATGA+AGG - chr1.4:58780374-58780393 None:intergenic 30.0%
!! AATTGAAAGAAGATGGATTG+TGG + chr1.4:58779552-58779571 MS.gene39964:CDS 30.0%
!!! CTTTTAGAAAGGGTTTTGAA+TGG + chr1.4:58779378-58779397 MS.gene39964:CDS 30.0%
AAAATTGCCGAAAAACTCAG+CGG + chr1.4:58780259-58780278 MS.gene39964:intron 35.0%
ACACCAACAAAAACAGCAAA+AGG - chr1.4:58780025-58780044 None:intergenic 35.0%
ACATCTGTTGATGTTGTAAG+TGG + chr1.4:58781514-58781533 MS.gene39964:CDS 35.0%
ACCGATGTAAAATTTCATGG+AGG - chr1.4:58781134-58781153 None:intergenic 35.0%
AGAGTTTGAAGACACATCTA+AGG + chr1.4:58781107-58781126 MS.gene39964:CDS 35.0%
AGCATTCACAACTAAGATCA+TGG - chr1.4:58780861-58780880 None:intergenic 35.0%
ATTTGCCACTCTTTCAGAAT+TGG - chr1.4:58781467-58781486 None:intergenic 35.0%
CAATCAACATTACTTGGATG+TGG + chr1.4:58780058-58780077 MS.gene39964:intron 35.0%
CAATTGTGTCACACAATAAC+TGG - chr1.4:58781022-58781041 None:intergenic 35.0%
CATGGTCAATCAACATTACT+TGG + chr1.4:58780052-58780071 MS.gene39964:intron 35.0%
GCGGATATGGTGATTATAAA+AGG + chr1.4:58780278-58780297 MS.gene39964:intron 35.0%
GGATAGTTCAAATGTTGTTG+TGG + chr1.4:58779214-58779233 MS.gene39964:CDS 35.0%
TATTGTGACTGACCAATGTA+AGG + chr1.4:58780165-58780184 MS.gene39964:intron 35.0%
TCTTCATTGAACATTGTGGA+GGG + chr1.4:58780745-58780764 MS.gene39964:CDS 35.0%
TGAATACCACAATTTCTTGC+GGG + chr1.4:58780626-58780645 MS.gene39964:CDS 35.0%
TGCTTCTTCATTGAACATTG+TGG + chr1.4:58780741-58780760 MS.gene39964:CDS 35.0%
TTCTTCATTGAACATTGTGG+AGG + chr1.4:58780744-58780763 MS.gene39964:CDS 35.0%
TTGAAATTCACAGTCCATTG+CGG + chr1.4:58781238-58781257 MS.gene39964:CDS 35.0%
TTTGCTAGATGCAAGTACAA+TGG + chr1.4:58781543-58781562 MS.gene39964:CDS 35.0%
! AGAAAATGGACTTGCATGTA+AGG + chr1.4:58779648-58779667 MS.gene39964:CDS 35.0%
! ATGCAAGTCCATTTTCTTGT+TGG - chr1.4:58779645-58779664 None:intergenic 35.0%
! ATTCTTTTTCTGCTCGACTA+CGG - chr1.4:58780585-58780604 None:intergenic 35.0%
! CAACAAGACTTTTCAATCTC+TGG + chr1.4:58779709-58779728 MS.gene39964:CDS 35.0%
! CAAGTAATGTTGATTGACCA+TGG - chr1.4:58780054-58780073 None:intergenic 35.0%
! CATTTTGCATTGCCTTACAT+TGG - chr1.4:58780180-58780199 None:intergenic 35.0%
! GAATTGGTGTCCTACAAATT+TGG - chr1.4:58781451-58781470 None:intergenic 35.0%
! TATGGTGAAGGTATAGAAGT+TGG + chr1.4:58779251-58779270 MS.gene39964:CDS 35.0%
! TCAAATGTTGTTGTGGATTG+TGG + chr1.4:58779221-58779240 MS.gene39964:CDS 35.0%
! TGGATGACGATTTTCATGTA+AGG + chr1.4:58779900-58779919 MS.gene39964:intron 35.0%
! TTTTTCTTTTTGATGGAGGG+CGG - chr1.4:58781278-58781297 None:intergenic 35.0%
!!! ATGCCTTTTGCTGTTTTTGT+TGG + chr1.4:58780019-58780038 MS.gene39964:intron 35.0%
!!! GGACAATTTTTTCCCATTGT+CGG - chr1.4:58779515-58779534 None:intergenic 35.0%
AAACGATCCAAACAGAGTGA+TGG + chr1.4:58781333-58781352 MS.gene39964:CDS 40.0%
AAGACACAGAGTCGTTTGTA+TGG + chr1.4:58780095-58780114 MS.gene39964:intron 40.0%
AATTGAAGCCACAAATGGAG+AGG + chr1.4:58781037-58781056 MS.gene39964:CDS 40.0%
ATCCTCCAACACATGATATG+TGG - chr1.4:58780779-58780798 None:intergenic 40.0%
ATGTGTGTGTGCTCAAGAAA+GGG + chr1.4:58780921-58780940 MS.gene39964:CDS 40.0%
ATTCTTGCATGCACAAGAGA+AGG + chr1.4:58779449-58779468 MS.gene39964:CDS 40.0%
CAATCTCTGGTTAAAGATGC+AGG + chr1.4:58779722-58779741 MS.gene39964:CDS 40.0%
CTCTGTTTGGATCGTTTACT+TGG - chr1.4:58781330-58781349 None:intergenic 40.0%
CTGGTATGATGAGAATGATC+AGG - chr1.4:58779596-58779615 None:intergenic 40.0%
CTTTGCCACATATCATGTGT+TGG + chr1.4:58780771-58780790 MS.gene39964:CDS 40.0%
GACACAATTGAAGCCACAAA+TGG + chr1.4:58781032-58781051 MS.gene39964:CDS 40.0%
GCAATTGGAAAAGAAGGTGA+TGG + chr1.4:58779809-58779828 MS.gene39964:CDS 40.0%
GGTGACTCAAATCCAAACAA+TGG + chr1.4:58781213-58781232 MS.gene39964:CDS 40.0%
GTTATGCAAGCATTTCTACG+AGG + chr1.4:58781068-58781087 MS.gene39964:CDS 40.0%
GTTCAAGGCCAACAAGAAAA+TGG + chr1.4:58779634-58779653 MS.gene39964:CDS 40.0%
TAGAAAGGCAAGGTTGTTCA+AGG + chr1.4:58779619-58779638 MS.gene39964:CDS 40.0%
TAGCATGAGTATACTCACCT+TGG - chr1.4:58780678-58780697 None:intergenic 40.0%
TATGTGTGTGTGCTCAAGAA+AGG + chr1.4:58780920-58780939 MS.gene39964:CDS 40.0%
TCAATTGTAGCATTCCTGGT+GGG - chr1.4:58781171-58781190 None:intergenic 40.0%
TCTGTTGATGTTGTAAGTGG+TGG + chr1.4:58781517-58781536 MS.gene39964:CDS 40.0%
TGAAATTCACAGTCCATTGC+GGG + chr1.4:58781239-58781258 MS.gene39964:CDS 40.0%
TGAACAACCTTGCCTTTCTA+GGG - chr1.4:58779619-58779638 None:intergenic 40.0%
TGTGGTAGTACTTATGGTGA+AGG + chr1.4:58779239-58779258 MS.gene39964:CDS 40.0%
TTACTTCTGATTTACCCACC+AGG + chr1.4:58781154-58781173 MS.gene39964:CDS 40.0%
TTCAATTGTAGCATTCCTGG+TGG - chr1.4:58781172-58781191 None:intergenic 40.0%
TTCTTGCATGCACAAGAGAA+GGG + chr1.4:58779450-58779469 MS.gene39964:CDS 40.0%
TTGAACAACCTTGCCTTTCT+AGG - chr1.4:58779620-58779639 None:intergenic 40.0%
TTGAGCTTCAGCAGAATCAT+TGG + chr1.4:58780386-58780405 MS.gene39964:intron 40.0%
TTGTCAAACCTCTCCATTTG+TGG - chr1.4:58781048-58781067 None:intergenic 40.0%
TTTGTTGGTGTGAATCACCA+TGG + chr1.4:58780034-58780053 MS.gene39964:intron 40.0%
! AAATGGACTTGCATGTAAGG+AGG + chr1.4:58779651-58779670 MS.gene39964:CDS 40.0%
! AAGAAGATGATGATGCATGC+TGG + chr1.4:58779291-58779310 MS.gene39964:CDS 40.0%
! ACCATATCCGCTGAGTTTTT+CGG - chr1.4:58780269-58780288 None:intergenic 40.0%
! AGAAGATGATGATGCATGCT+GGG + chr1.4:58779292-58779311 MS.gene39964:CDS 40.0%
! AGCAGAATCATTGGTTGACT+GGG + chr1.4:58780395-58780414 MS.gene39964:intron 40.0%
! AGGGCTGCTTATGAGTATTT+TGG + chr1.4:58779950-58779969 MS.gene39964:intron 40.0%
! GTGGATTGTGGTAGTACTTA+TGG + chr1.4:58779233-58779252 MS.gene39964:CDS 40.0%
ACATCGAGAAAAGGACGAGA+TGG + chr1.4:58779410-58779429 MS.gene39964:CDS 45.0%
ATCGAGAAAAGGACGAGATG+GGG + chr1.4:58779412-58779431 MS.gene39964:CDS 45.0%
ATTGAAGACACGTCCGACAA+TGG + chr1.4:58779499-58779518 MS.gene39964:CDS 45.0%
CATCGAGAAAAGGACGAGAT+GGG + chr1.4:58779411-58779430 MS.gene39964:CDS 45.0%
CCTTTACGTTTAACCCGCAA+TGG - chr1.4:58781255-58781274 None:intergenic 45.0%
CTCTGGTTAAAGATGCAGGA+GGG + chr1.4:58779726-58779745 MS.gene39964:CDS 45.0%
GGCAATGCAAAATGCAATCG+AGG + chr1.4:58780186-58780205 MS.gene39964:intron 45.0%
GGTCAGTCACAATACCAACA+GGG - chr1.4:58780159-58780178 None:intergenic 45.0%
GTCAGTCACAATACCAACAG+GGG - chr1.4:58780158-58780177 None:intergenic 45.0%
GTGTTGGAGGATGTGTTAGT+TGG + chr1.4:58780787-58780806 MS.gene39964:CDS 45.0%
GTTTGACCCGCAAGAAATTG+TGG - chr1.4:58780635-58780654 None:intergenic 45.0%
TATGCCATAAACACCACCTG+TGG - chr1.4:58780231-58780250 None:intergenic 45.0%
TCAGTCACAATACCAACAGG+GGG - chr1.4:58780157-58780176 None:intergenic 45.0%
TCATCATACCAGCCCTAGAA+AGG + chr1.4:58779604-58779623 MS.gene39964:CDS 45.0%
TCATGGCTTCGTTGTATGCT+GGG + chr1.4:58780127-58780146 MS.gene39964:intron 45.0%
TCTCTGGTTAAAGATGCAGG+AGG + chr1.4:58779725-58779744 MS.gene39964:CDS 45.0%
TGCCACATATCATGTGTTGG+AGG + chr1.4:58780774-58780793 MS.gene39964:CDS 45.0%
TGGTCAGTCACAATACCAAC+AGG - chr1.4:58780160-58780179 None:intergenic 45.0%
TTCATGGCTTCGTTGTATGC+TGG + chr1.4:58780126-58780145 MS.gene39964:intron 45.0%
TTGAAGACACGTCCGACAAT+GGG + chr1.4:58779500-58779519 MS.gene39964:CDS 45.0%
TTGGGCTGATGCAAGAAGTA+GGG + chr1.4:58779931-58779950 MS.gene39964:intron 45.0%
TTTGGGCTGATGCAAGAAGT+AGG + chr1.4:58779930-58779949 MS.gene39964:intron 45.0%
! CAATGATGATGCAGGTGTGA+GGG + chr1.4:58779685-58779704 MS.gene39964:CDS 45.0%
! CAGCAGAATCATTGGTTGAC+TGG + chr1.4:58780394-58780413 MS.gene39964:intron 45.0%
! CCATTGCGGGTTAAACGTAA+AGG + chr1.4:58781252-58781271 MS.gene39964:CDS 45.0%
! GGACACCAATTCTGAAAGAG+TGG + chr1.4:58781459-58781478 MS.gene39964:intron 45.0%
! TCAATGATGATGCAGGTGTG+AGG + chr1.4:58779684-58779703 MS.gene39964:CDS 45.0%
! TGGAAAAGAAGGTGATGGCA+AGG + chr1.4:58779814-58779833 MS.gene39964:CDS 45.0%
AACAAGGAACGGCGTGCAAT+TGG + chr1.4:58779794-58779813 MS.gene39964:CDS 50.0%
ATACCAGCCCTAGAAAGGCA+AGG + chr1.4:58779609-58779628 MS.gene39964:CDS 50.0%
CGGCGTGCAATTGGAAAAGA+AGG + chr1.4:58779803-58779822 MS.gene39964:CDS 50.0%
CTACGAGGTTGCTGAAGTAG+CGG + chr1.4:58781083-58781102 MS.gene39964:CDS 50.0%
GCCGAAAAACTCAGCGGATA+TGG + chr1.4:58780265-58780284 MS.gene39964:intron 50.0%
TCCAAACAGAGTGATGGCAG+AGG + chr1.4:58781339-58781358 MS.gene39964:CDS 50.0%
TCCTCTGCCATCACTCTGTT+TGG - chr1.4:58781343-58781362 None:intergenic 50.0%
! CTTGGATGTGGGTTGCTATC+AGG + chr1.4:58780070-58780089 MS.gene39964:intron 50.0%
! TTTTCCCTACAACTCGCCAC+AGG + chr1.4:58780212-58780231 MS.gene39964:intron 50.0%
ACCACCTGTGGCGAGTTGTA+GGG - chr1.4:58780219-58780238 None:intergenic 55.0%
CTCGCCACAGGTGGTGTTTA+TGG + chr1.4:58780224-58780243 MS.gene39964:intron 55.0%
GAGAAAAGGACGAGATGGGG+AGG + chr1.4:58779415-58779434 MS.gene39964:CDS 55.0%
!! CAACCTTGCCTTTCTAGGGC+TGG - chr1.4:58779615-58779634 None:intergenic 55.0%
ATGCTGGGAAAGCCCCCTGT+TGG + chr1.4:58780142-58780161 MS.gene39964:intron 60.0%
CACCACCTGTGGCGAGTTGT+AGG - chr1.4:58780220-58780239 None:intergenic 60.0%
TCCCTACAACTCGCCACAGG+TGG + chr1.4:58780215-58780234 MS.gene39964:intron 60.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 58779212 58781576 58779212 ID=MS.gene39964
chr1.4 mRNA 58779212 58781576 58779212 ID=MS.gene39964.t1;Parent=MS.gene39964
chr1.4 exon 58779212 58779916 58779212 ID=MS.gene39964.t1.exon1;Parent=MS.gene39964.t1
chr1.4 CDS 58779212 58779916 58779212 ID=cds.MS.gene39964.t1;Parent=MS.gene39964.t1
chr1.4 exon 58780493 58781368 58780493 ID=MS.gene39964.t1.exon2;Parent=MS.gene39964.t1
chr1.4 CDS 58780493 58781368 58780493 ID=cds.MS.gene39964.t1;Parent=MS.gene39964.t1
chr1.4 exon 58781460 58781576 58781460 ID=MS.gene39964.t1.exon3;Parent=MS.gene39964.t1
chr1.4 CDS 58781460 58781576 58781460 ID=cds.MS.gene39964.t1;Parent=MS.gene39964.t1
Gene Sequence

>MS.gene39964

ATGGATAGTTCAAATGTTGTTGTGGATTGTGGTAGTACTTATGGTGAAGGTATAGAAGTTGGCAGCTTTAATGTTGAAGAAGAAGATGATGATGCATGCTGGGAGCCTAAAATAGATATGTGTTTTTCTACCTTAGATGAAGTTAAATCATTTTATAAAGAGTATGCTTTTAGAAAGGGTTTTGAATGGAAGATTAGAACATCGAGAAAAGGACGAGATGGGGAGGTCTGCTACTTAATTCTTGCATGCACAAGAGAAGGGTCTCAAGTGACAAAAAGTCTGTGTACATTGAAGACACGTCCGACAATGGGAAAAAATTGTCCTGCTAAGATTTGTATCAAATTGAAAGAAGATGGATTGTGGTACATTCAAAAATTTGAACCTGATCATTCTCATCATACCAGCCCTAGAAAGGCAAGGTTGTTCAAGGCCAACAAGAAAATGGACTTGCATGTAAGGAGGACAATTGAAATCAATGATGATGCAGGTGTGAGGGTCAACAAGACTTTTCAATCTCTGGTTAAAGATGCAGGAGGGTATGAAAATACTCCATTTAATGAAAGAGATGTGAGGAATTATGTTAACAAGGAACGGCGTGCAATTGGAAAAGAAGGTGATGGCAAGGCCTTGATAAACTATTTTTGTCAAATGAGGGAAGAAAATCCATATTTCTTCTATGAAATAGATTTGGATGACGATTTTCATGTAAGGAATGTCTTTTGGGCTGATGCAAGAAGTAGGGCTGCTTATGAGTATTTTGGAGATGTTGTAACTTTCGACACAACATATTTGACCAACAAATATGATATGCCTTTTGCTGTTTTTGTTGGTGTGAATCACCATGGTCAATCAACATTACTTGGATGTGGGTTGCTATCAGGAGAAGACACAGAGTCGTTTGTATGGCTTTTTAATTCATGGCTTCGTTGTATGCTGGGAAAGCCCCCTGTTGGTATTGTGACTGACCAATGTAAGGCAATGCAAAATGCAATCGAGGCAGTTTTCCCTACAACTCGCCACAGGTGGTGTTTATGGCATATAATGAAAAAAATTGCCGAAAAACTCAGCGGATATGGTGATTATAAAAGGATTAAGTTTGCAATGAAAGAAGTTGTTTATGATACGTTTACAACATATGATTTTGAAGAGAAATGGTGTTCCTTCATCGAAAAATTTGAGCTTCAGCAGAATCATTGGTTGACTGGGTTGTATAATGAGCGTCATAAATGGGTACCAACCTTCTTAAGAAAATATTTTTGGGCTGGTATGTCAACAACTCAGCGAAGTGAGAGTATACATGCTTTCTTTGATGGTTATATCAATTCAACGACAAGTCTAAATCAATTTACGAAACAATATGATAATGCTCTCCGTAGTCGAGCAGAAAAAGAATTTGAAGCTGATTTTAATTCGATGAATACCACAATTTCTTGCGGGTCAAACTCGTCAATTGAAAAGCAATTCCAAGGTGAGTATACTCATGCTAAATTTAAGGAGGTTCAAGTTGAATTTAGATCTAAAGTGAATTGTGCTTCTTCATTGAACATTGTGGAGGGCTGCTTTGCCACATATCATGTGTTGGAGGATGTGTTAGTTGGTGATAGAACGAAAGAACATGTATTTAAAGTTGTGTTTAATCGAGAAAACCATGATCTTAGTTGTGAATGCTCATTGTTTGAATTTAGAGGTATTTTGTGTCGGCATGTGTTATGTGTGTGTGCTCAAGAAAGGGTTAAAAACGTACCAGAGAAGTATGTTTTAACTAGATGGAAGAAAAATATTAAAAGGAAGCATACATATATTAAGACCAGTTATTGTGTGACACAATTGAAGCCACAAATGGAGAGGTTTGACAAGTTATGCAAGCATTTCTACGAGGTTGCTGAAGTAGCGGCAGAGTTTGAAGACACATCTAAGGACCTCCATGAAATTTTACATCGGTTTACTTCTGATTTACCCACCAGGAATGCTACAATTGAAAATGTTAAAGAAAGTTTCAATGGTGACTCAAATCCAAACAATGGTATTGAAATTCACAGTCCATTGCGGGTTAAACGTAAAGGCCGCCCTCCATCAAAAAGAAAAATGTCTGCAATCGAAAAAGTTGTTAAGAAGCCAAGTAAACGATCCAAACAGAGTGATGGCAGAGGAACTAATGTATGTTTTATTTTATTTTATTTATAAGTTTTGTAATTACCATGTATATATGGATATTGCATCTTAATTTTCTGTTTGTCCAAATTTGTAGGACACCAATTCTGAAAGAGTGGCAAATCAGTTTGACAACAACATCTACATTGAAACATCTGTTGATGTTGTAAGTGGTGGAGATTTGCTAGATGCAAGTACAATGGTAGTTAACTAG

Protein sequence

>MS.gene39964.t1

MDSSNVVVDCGSTYGEGIEVGSFNVEEEDDDACWEPKIDMCFSTLDEVKSFYKEYAFRKGFEWKIRTSRKGRDGEVCYLILACTREGSQVTKSLCTLKTRPTMGKNCPAKICIKLKEDGLWYIQKFEPDHSHHTSPRKARLFKANKKMDLHVRRTIEINDDAGVRVNKTFQSLVKDAGGYENTPFNERDVRNYVNKERRAIGKEGDGKALINYFCQMREENPYFFYEIDLDDDFHRSESIHAFFDGYINSTTSLNQFTKQYDNALRSRAEKEFEADFNSMNTTISCGSNSSIEKQFQGEYTHAKFKEVQVEFRSKVNCASSLNIVEGCFATYHVLEDVLVGDRTKEHVFKVVFNRENHDLSCECSLFEFRGILCRHVLCVCAQERVKNVPEKYVLTRWKKNIKRKHTYIKTSYCVTQLKPQMERFDKLCKHFYEVAEVAAEFEDTSKDLHEILHRFTSDLPTRNATIENVKESFNGDSNPNNGIEIHSPLRVKRKGRPPSKRKMSAIEKVVKKPSKRSKQSDGRGTNDTNSERVANQFDNNIYIETSVDVVSGGDLLDASTMVVN