Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40015.t1 | XP_003590706.2 | 99.3 | 148 | 1 | 0 | 1 | 148 | 1 | 148 | 1.00E-74 | 289.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40015.t1 | Q8VYK4 | 70.3 | 148 | 41 | 2 | 2 | 149 | 6 | 150 | 1.5e-50 | 200.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40015.t1 | B7FGV1 | 99.3 | 148 | 1 | 0 | 1 | 148 | 1 | 148 | 7.5e-75 | 289.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene40015.t1 | TF | NF-YB |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40015.t1 | MTR_1g072790 | 99.324 | 148 | 1 | 0 | 1 | 148 | 1 | 148 | 1.72e-108 | 306 |
MS.gene40015.t1 | MTR_7g061270 | 78.358 | 134 | 24 | 3 | 11 | 143 | 12 | 141 | 1.13e-71 | 213 |
MS.gene40015.t1 | MTR_7g100650 | 80.315 | 127 | 21 | 2 | 11 | 137 | 12 | 134 | 2.09e-71 | 212 |
MS.gene40015.t1 | MTR_5g095740 | 68.939 | 132 | 35 | 1 | 1 | 132 | 1 | 126 | 3.00e-62 | 189 |
MS.gene40015.t1 | MTR_3g058980 | 67.883 | 137 | 39 | 2 | 1 | 134 | 1 | 135 | 1.48e-61 | 188 |
MS.gene40015.t1 | MTR_2g026710 | 65.693 | 137 | 35 | 2 | 9 | 145 | 3 | 127 | 1.84e-60 | 184 |
MS.gene40015.t1 | MTR_8g091720 | 68.644 | 118 | 29 | 1 | 17 | 126 | 8 | 125 | 1.80e-55 | 172 |
MS.gene40015.t1 | MTR_4g133938 | 68.908 | 119 | 34 | 2 | 22 | 138 | 10 | 127 | 3.40e-54 | 167 |
MS.gene40015.t1 | MTR_8g093920 | 72.632 | 95 | 26 | 0 | 28 | 122 | 39 | 133 | 4.72e-52 | 164 |
MS.gene40015.t1 | MTR_0392s0020 | 68.571 | 105 | 29 | 1 | 22 | 122 | 7 | 111 | 2.29e-50 | 157 |
MS.gene40015.t1 | MTR_4g119500 | 66.019 | 103 | 35 | 0 | 28 | 130 | 21 | 123 | 8.92e-50 | 156 |
MS.gene40015.t1 | MTR_4g133952 | 63.063 | 111 | 37 | 1 | 16 | 122 | 41 | 151 | 1.13e-48 | 157 |
MS.gene40015.t1 | MTR_1g088860 | 69.474 | 95 | 29 | 0 | 28 | 122 | 35 | 129 | 2.11e-48 | 154 |
MS.gene40015.t1 | MTR_1g039040 | 59.223 | 103 | 42 | 0 | 28 | 130 | 5 | 107 | 1.48e-44 | 144 |
MS.gene40015.t1 | MTR_1g083070 | 58.696 | 92 | 38 | 0 | 29 | 120 | 4 | 95 | 8.22e-38 | 125 |
MS.gene40015.t1 | MTR_1g029070 | 48.485 | 99 | 51 | 0 | 27 | 125 | 50 | 148 | 5.17e-30 | 107 |
MS.gene40015.t1 | MTR_5g095900 | 44.330 | 97 | 54 | 0 | 22 | 118 | 9 | 105 | 3.44e-23 | 90.1 |
MS.gene40015.t1 | MTR_2g056000 | 33.858 | 127 | 81 | 2 | 8 | 134 | 21 | 144 | 5.52e-20 | 82.0 |
MS.gene40015.t1 | MTR_1g028480 | 59.649 | 57 | 23 | 0 | 64 | 120 | 24 | 80 | 1.21e-19 | 79.0 |
MS.gene40015.t1 | MTR_1g029100 | 40.789 | 76 | 45 | 0 | 34 | 109 | 7 | 82 | 1.39e-19 | 78.2 |
MS.gene40015.t1 | MTR_4g112380 | 41.176 | 85 | 48 | 1 | 30 | 114 | 12 | 94 | 1.20e-17 | 75.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene40015.t1 | AT2G37060 | 70.270 | 148 | 41 | 2 | 2 | 149 | 6 | 150 | 2.17e-71 | 212 |
MS.gene40015.t1 | AT2G37060 | 70.270 | 148 | 41 | 2 | 2 | 149 | 6 | 150 | 2.17e-71 | 212 |
MS.gene40015.t1 | AT2G37060 | 70.270 | 148 | 41 | 2 | 2 | 149 | 6 | 150 | 2.17e-71 | 212 |
MS.gene40015.t1 | AT2G38880 | 70.667 | 150 | 33 | 3 | 1 | 149 | 1 | 140 | 2.09e-69 | 206 |
MS.gene40015.t1 | AT2G38880 | 71.918 | 146 | 30 | 3 | 1 | 145 | 1 | 136 | 5.37e-69 | 205 |
MS.gene40015.t1 | AT2G38880 | 71.918 | 146 | 30 | 3 | 1 | 145 | 1 | 136 | 5.37e-69 | 205 |
MS.gene40015.t1 | AT2G38880 | 71.918 | 146 | 30 | 3 | 1 | 145 | 1 | 136 | 5.37e-69 | 205 |
MS.gene40015.t1 | AT3G53340 | 74.436 | 133 | 29 | 2 | 17 | 149 | 19 | 146 | 3.27e-67 | 202 |
MS.gene40015.t1 | AT3G53340 | 74.436 | 133 | 29 | 2 | 17 | 149 | 19 | 146 | 3.27e-67 | 202 |
MS.gene40015.t1 | AT2G38880 | 70.548 | 146 | 30 | 4 | 1 | 145 | 1 | 134 | 1.39e-65 | 196 |
MS.gene40015.t1 | AT2G38880 | 62.130 | 169 | 30 | 4 | 1 | 145 | 1 | 159 | 2.46e-63 | 191 |
MS.gene40015.t1 | AT2G38880 | 62.130 | 169 | 30 | 4 | 1 | 145 | 1 | 159 | 2.46e-63 | 191 |
MS.gene40015.t1 | AT4G14540 | 71.311 | 122 | 27 | 2 | 1 | 122 | 1 | 114 | 7.47e-61 | 185 |
MS.gene40015.t1 | AT2G38880 | 75.000 | 120 | 20 | 2 | 1 | 119 | 1 | 111 | 1.77e-60 | 182 |
MS.gene40015.t1 | AT3G53340 | 83.654 | 104 | 15 | 1 | 17 | 120 | 19 | 120 | 5.00e-60 | 182 |
MS.gene40015.t1 | AT3G53340 | 83.654 | 104 | 15 | 1 | 17 | 120 | 19 | 120 | 5.00e-60 | 182 |
MS.gene40015.t1 | AT5G47640 | 80.952 | 105 | 20 | 0 | 28 | 132 | 26 | 130 | 5.67e-60 | 184 |
MS.gene40015.t1 | AT3G53340 | 83.495 | 103 | 15 | 1 | 17 | 119 | 19 | 119 | 6.02e-60 | 181 |
MS.gene40015.t1 | AT2G38880 | 75.630 | 119 | 21 | 2 | 1 | 119 | 1 | 111 | 1.21e-59 | 182 |
MS.gene40015.t1 | AT2G38880 | 75.630 | 119 | 21 | 2 | 1 | 119 | 1 | 111 | 1.21e-59 | 182 |
MS.gene40015.t1 | AT2G38880 | 75.630 | 119 | 21 | 2 | 1 | 119 | 1 | 111 | 1.21e-59 | 182 |
MS.gene40015.t1 | AT2G13570 | 62.791 | 129 | 39 | 2 | 9 | 128 | 7 | 135 | 8.55e-54 | 169 |
MS.gene40015.t1 | AT5G47670 | 61.818 | 110 | 37 | 1 | 28 | 132 | 28 | 137 | 3.97e-48 | 154 |
MS.gene40015.t1 | AT2G47810 | 67.677 | 99 | 32 | 0 | 24 | 122 | 46 | 144 | 7.98e-48 | 152 |
MS.gene40015.t1 | AT5G47670 | 61.818 | 110 | 37 | 1 | 28 | 132 | 57 | 166 | 8.21e-48 | 154 |
MS.gene40015.t1 | AT5G47670 | 61.818 | 110 | 37 | 1 | 28 | 132 | 57 | 166 | 8.21e-48 | 154 |
MS.gene40015.t1 | AT1G21970 | 54.310 | 116 | 52 | 1 | 26 | 141 | 56 | 170 | 4.05e-45 | 147 |
MS.gene40015.t1 | AT1G09030 | 52.830 | 106 | 50 | 0 | 29 | 134 | 3 | 108 | 4.52e-40 | 132 |
MS.gene40015.t1 | AT5G08190 | 36.538 | 104 | 66 | 0 | 29 | 132 | 11 | 114 | 7.62e-20 | 80.9 |
MS.gene40015.t1 | AT5G08190 | 38.462 | 104 | 63 | 1 | 30 | 132 | 12 | 115 | 1.90e-19 | 80.1 |
MS.gene40015.t1 | AT5G23090 | 34.615 | 104 | 68 | 0 | 30 | 133 | 12 | 115 | 8.88e-19 | 78.2 |
MS.gene40015.t1 | AT5G23090 | 36.190 | 105 | 66 | 1 | 30 | 133 | 12 | 116 | 2.28e-18 | 77.0 |
MS.gene40015.t1 | AT5G23090 | 36.190 | 105 | 66 | 1 | 30 | 133 | 12 | 116 | 2.28e-18 | 77.0 |
MS.gene40015.t1 | AT5G23090 | 36.190 | 105 | 66 | 1 | 30 | 133 | 12 | 116 | 2.28e-18 | 77.0 |
MS.gene40015.t1 | AT5G23090 | 35.955 | 89 | 56 | 1 | 46 | 133 | 15 | 103 | 6.86e-14 | 65.1 |
Find 29 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGGTCTTTCTCTTCTCTTTC+TGG | 0.035702 | 1.4:+59578800 | None:intergenic |
GAGAAGAGAAAGACCATTAA+TGG | 0.272230 | 1.4:-59578793 | MS.gene40015:CDS |
TAACAAATCATCTCCATTAA+TGG | 0.277036 | 1.4:+59578780 | None:intergenic |
TTATGGGCTATGGCTACTTT+AGG | 0.294228 | 1.4:-59578760 | MS.gene40015:CDS |
TAATGGAGATGATTTGTTAT+GGG | 0.363879 | 1.4:-59578776 | MS.gene40015:CDS |
TTAATGGAGATGATTTGTTA+TGG | 0.386568 | 1.4:-59578777 | MS.gene40015:CDS |
TCTCGTGGCTTTCTTCGCAT+TGG | 0.434390 | 1.4:+59579457 | None:intergenic |
GACCTGGAGGACCGCCAACT+TGG | 0.437143 | 1.4:+59578413 | None:intergenic |
CTTGCTAGGTACACCTTAAG+TGG | 0.449127 | 1.4:+59578718 | None:intergenic |
GACCAAGTTGGCGGTCCTCC+AGG | 0.458458 | 1.4:-59578415 | MS.gene40015:CDS |
ATTCTGCTAATGTTAGCTAT+AGG | 0.459912 | 1.4:+59579372 | None:intergenic |
TGGCTTTCTTCGCATTGGTT+CGG | 0.462126 | 1.4:+59579462 | None:intergenic |
AGACTATATAGAACCACTTA+AGG | 0.485870 | 1.4:-59578731 | MS.gene40015:CDS |
AGATGATTTGTTATGGGCTA+TGG | 0.505790 | 1.4:-59578770 | MS.gene40015:CDS |
TCCTCCAGGTCAAAATGCTC+AGG | 0.507423 | 1.4:-59578401 | MS.gene40015:CDS |
GTTAGAAACAGTGATGGATC+TGG | 0.524015 | 1.4:-59578445 | MS.gene40015:CDS |
TTGGTTCGGTGCATCTGCCA+TGG | 0.526473 | 1.4:+59579476 | None:intergenic |
TTACCTCTCTGAACCTTGCT+AGG | 0.526654 | 1.4:+59578704 | None:intergenic |
TTCTGATAGGGTGATAGTAA+AGG | 0.555051 | 1.4:-59578472 | MS.gene40015:intron |
CACTTAAGGTGTACCTAGCA+AGG | 0.580922 | 1.4:-59578717 | MS.gene40015:CDS |
GGATCTGTTAGAAACAGTGA+TGG | 0.605861 | 1.4:-59578451 | MS.gene40015:CDS |
TCTGTTCACCACCACTCTCG+TGG | 0.616032 | 1.4:+59579442 | None:intergenic |
TGCGAAGAAAGCCACGAGAG+TGG | 0.627075 | 1.4:-59579453 | MS.gene40015:CDS |
GGTAGACGAGACCAAGTTGG+CGG | 0.631551 | 1.4:-59578424 | MS.gene40015:CDS |
TCTGGTAGACGAGACCAAGT+TGG | 0.636481 | 1.4:-59578427 | MS.gene40015:CDS |
GAAGAAAGCCACGAGAGTGG+TGG | 0.673522 | 1.4:-59579450 | MS.gene40015:CDS |
GGTGGTGAACAGAGTCCACG+TGG | 0.738315 | 1.4:-59579432 | MS.gene40015:CDS |
GAAGCAGAAGAAGAGCCACG+TGG | 0.770183 | 1.4:+59579417 | None:intergenic |
GTACCTAGCAAGGTTCAGAG+AGG | 0.773002 | 1.4:-59578707 | MS.gene40015:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | GTAATATAAATTTCAGTTAT+TGG | - | chr1.4:59578725-59578744 | MS.gene40015:CDS | 15.0% |
!!! | AATAAAAAATACTATGGTTT+TGG | + | chr1.4:59578636-59578655 | None:intergenic | 15.0% |
!!! | ATATAATAAATTGTGGTTTT+TGG | - | chr1.4:59578897-59578916 | MS.gene40015:intron | 15.0% |
!! | AAAATAATACAATCAATCAG+AGG | + | chr1.4:59579323-59579342 | None:intergenic | 20.0% |
!! | AAATAATACAATCAATCAGA+GGG | + | chr1.4:59579322-59579341 | None:intergenic | 20.0% |
!! | AGTTGTAAAATGCTTAAAAA+TGG | - | chr1.4:59578677-59578696 | MS.gene40015:intron | 20.0% |
!! | ATGGGTAATATAATAAATTG+TGG | - | chr1.4:59578890-59578909 | MS.gene40015:intron | 20.0% |
!! | TTGTCAATTTATATGATGTT+TGG | - | chr1.4:59578959-59578978 | MS.gene40015:intron | 20.0% |
! | AAAAAAGCTTTACCTTCAAA+TGG | - | chr1.4:59578525-59578544 | MS.gene40015:intron | 25.0% |
! | AAAAAGCTTTACCTTCAAAT+GGG | - | chr1.4:59578526-59578545 | MS.gene40015:intron | 25.0% |
! | AAATTTCAGTTATTGGCATT+TGG | - | chr1.4:59578732-59578751 | MS.gene40015:CDS | 25.0% |
! | AATAATACAATCAATCAGAG+GGG | + | chr1.4:59579321-59579340 | None:intergenic | 25.0% |
! | AATTTCAGTTATTGGCATTT+GGG | - | chr1.4:59578733-59578752 | MS.gene40015:CDS | 25.0% |
! | ATATTACCCATCTAAAAAGA+GGG | + | chr1.4:59578881-59578900 | None:intergenic | 25.0% |
! | CCATAAAGAACATTATCAAA+TGG | + | chr1.4:59579211-59579230 | None:intergenic | 25.0% |
! | TAACAAATCATCTCCATTAA+TGG | + | chr1.4:59579093-59579112 | None:intergenic | 25.0% |
! | TATATTACCCATCTAAAAAG+AGG | + | chr1.4:59578882-59578901 | None:intergenic | 25.0% |
! | TTGCTAATTTATATGATGCT+GGG | - | chr1.4:59578786-59578805 | MS.gene40015:CDS | 25.0% |
! | TTTGCTAATTTATATGATGC+TGG | - | chr1.4:59578785-59578804 | MS.gene40015:CDS | 25.0% |
!! | TTTTATGCTCTCTTTTAGAT+AGG | - | chr1.4:59578703-59578722 | MS.gene40015:intron | 25.0% |
!! | TTTTTACCCTCTTTTTAGAT+GGG | - | chr1.4:59578872-59578891 | MS.gene40015:intron | 25.0% |
!!! | AAATACTATGGTTTTGGAAT+TGG | + | chr1.4:59578630-59578649 | None:intergenic | 25.0% |
!!! | AATACTATGGTTTTGGAATT+GGG | + | chr1.4:59578629-59578648 | None:intergenic | 25.0% |
!!! | ATGTTTGGTGAAAATCTTTT+AGG | - | chr1.4:59578974-59578993 | MS.gene40015:intron | 25.0% |
!!! | CCATTTGATAATGTTCTTTA+TGG | - | chr1.4:59579208-59579227 | MS.gene40015:intron | 25.0% |
!!! | TAATGGAGATGATTTGTTAT+GGG | - | chr1.4:59579094-59579113 | MS.gene40015:intron | 25.0% |
!!! | TGTTTGGTGAAAATCTTTTA+GGG | - | chr1.4:59578975-59578994 | MS.gene40015:intron | 25.0% |
!!! | TTAATGGAGATGATTTGTTA+TGG | - | chr1.4:59579093-59579112 | MS.gene40015:intron | 25.0% |
!!! | TTTTTGTTTGTTGTCTGAAT+TGG | - | chr1.4:59579006-59579025 | MS.gene40015:intron | 25.0% |
!!! | TTTTTTACCCTCTTTTTAGA+TGG | - | chr1.4:59578871-59578890 | MS.gene40015:intron | 25.0% |
AGACTATATAGAACCACTTA+AGG | - | chr1.4:59579139-59579158 | MS.gene40015:intron | 30.0% | |
ATTCTGCTAATGTTAGCTAT+AGG | + | chr1.4:59578501-59578520 | None:intergenic | 30.0% | |
! | GAATTGGAAATGGATGTTTT+GGG | - | chr1.4:59579022-59579041 | MS.gene40015:intron | 30.0% |
! | TGAATTGGAAATGGATGTTT+TGG | - | chr1.4:59579021-59579040 | MS.gene40015:intron | 30.0% |
! | TTTGTTGTCTGAATTGGAAA+TGG | - | chr1.4:59579012-59579031 | MS.gene40015:intron | 30.0% |
CTAATTTATATGATGCTGGG+TGG | - | chr1.4:59578789-59578808 | MS.gene40015:CDS | 35.0% | |
GAGAAGAGAAAGACCATTAA+TGG | - | chr1.4:59579077-59579096 | MS.gene40015:intron | 35.0% | |
TCGACATTTCAAAATCACCA+GGG | + | chr1.4:59579267-59579286 | None:intergenic | 35.0% | |
TTATTGGCATTTGGGTCTAT+TGG | - | chr1.4:59578741-59578760 | MS.gene40015:CDS | 35.0% | |
TTCTGATAGGGTGATAGTAA+AGG | - | chr1.4:59579398-59579417 | MS.gene40015:CDS | 35.0% | |
! | GCTGGGTGGAAAATATTTTA+GGG | - | chr1.4:59578803-59578822 | MS.gene40015:CDS | 35.0% |
! | TGCTGGGTGGAAAATATTTT+AGG | - | chr1.4:59578802-59578821 | MS.gene40015:CDS | 35.0% |
! | TTCGCAATTTTCCCATTTGA+AGG | + | chr1.4:59578540-59578559 | None:intergenic | 35.0% |
!! | AGATGATTTGTTATGGGCTA+TGG | - | chr1.4:59579100-59579119 | MS.gene40015:intron | 35.0% |
!!! | ATTGTGGTTTTTGGCAAATG+TGG | - | chr1.4:59578906-59578925 | MS.gene40015:intron | 35.0% |
!!! | TGGTGATTTTGAAATGTCGA+CGG | - | chr1.4:59579267-59579286 | MS.gene40015:intron | 35.0% |
AATACAATCAATCAGAGGGG+AGG | + | chr1.4:59579318-59579337 | None:intergenic | 40.0% | |
ACCTTAGACTATCTTGCCAA+TGG | - | chr1.4:59579350-59579369 | MS.gene40015:CDS | 40.0% | |
CACAGATGTTAGCATTCCAT+TGG | + | chr1.4:59579369-59579388 | None:intergenic | 40.0% | |
CCAGGGAAGAAGGAAAAAAA+CGG | + | chr1.4:59579250-59579269 | None:intergenic | 40.0% | |
GGATCTGTTAGAAACAGTGA+TGG | - | chr1.4:59579419-59579438 | MS.gene40015:CDS | 40.0% | |
GTCGACATTTCAAAATCACC+AGG | + | chr1.4:59579268-59579287 | None:intergenic | 40.0% | |
TATCACCCTATCAGAAACCA+TGG | + | chr1.4:59579394-59579413 | None:intergenic | 40.0% | |
TCCATTGGCAAGATAGTCTA+AGG | + | chr1.4:59579354-59579373 | None:intergenic | 40.0% | |
TGGTCTTTCTCTTCTCTTTC+TGG | + | chr1.4:59579073-59579092 | None:intergenic | 40.0% | |
TTCAAAATCACCAGGGAAGA+AGG | + | chr1.4:59579260-59579279 | None:intergenic | 40.0% | |
! | TTATGGGCTATGGCTACTTT+AGG | - | chr1.4:59579110-59579129 | MS.gene40015:intron | 40.0% |
!! | GTTAGAAACAGTGATGGATC+TGG | - | chr1.4:59579425-59579444 | MS.gene40015:CDS | 40.0% |
!! | TGGAAATGGATGTTTTGGGT+TGG | - | chr1.4:59579026-59579045 | MS.gene40015:intron | 40.0% |
!!! | GATGTTTTGGGTTGGTTGTA+GGG | - | chr1.4:59579034-59579053 | MS.gene40015:intron | 40.0% |
ATGCTAACATCTGTGAGCCA+TGG | - | chr1.4:59579374-59579393 | MS.gene40015:CDS | 45.0% | |
CACTTAAGGTGTACCTAGCA+AGG | - | chr1.4:59579153-59579172 | MS.gene40015:intron | 45.0% | |
CTTGCTAGGTACACCTTAAG+TGG | + | chr1.4:59579155-59579174 | None:intergenic | 45.0% | |
GTGAGCCATGGTTTCTGATA+GGG | - | chr1.4:59579386-59579405 | MS.gene40015:CDS | 45.0% | |
TCGACGGATATCACAGTTAG+AGG | - | chr1.4:59579283-59579302 | MS.gene40015:CDS | 45.0% | |
TGTGAGCCATGGTTTCTGAT+AGG | - | chr1.4:59579385-59579404 | MS.gene40015:CDS | 45.0% | |
TTACCTCTCTGAACCTTGCT+AGG | + | chr1.4:59579169-59579188 | None:intergenic | 45.0% | |
!! | TGGCTTTCTTCGCATTGGTT+CGG | + | chr1.4:59578411-59578430 | None:intergenic | 45.0% |
!!! | CCGTTTTTTTCCTTCTTCCC+TGG | - | chr1.4:59579247-59579266 | MS.gene40015:intron | 45.0% |
!!! | GGATGTTTTGGGTTGGTTGT+AGG | - | chr1.4:59579033-59579052 | MS.gene40015:intron | 45.0% |
!! | TAAAAAAATAAAAAATACTA+TGG | + | chr1.4:59578642-59578661 | None:intergenic | 5.0% |
GTACCTAGCAAGGTTCAGAG+AGG | - | chr1.4:59579163-59579182 | MS.gene40015:intron | 50.0% | |
TCCTCCAGGTCAAAATGCTC+AGG | - | chr1.4:59579469-59579488 | MS.gene40015:CDS | 50.0% | |
TCTCGTGGCTTTCTTCGCAT+TGG | + | chr1.4:59578416-59578435 | None:intergenic | 50.0% | |
TCTGGTAGACGAGACCAAGT+TGG | - | chr1.4:59579443-59579462 | MS.gene40015:CDS | 50.0% | |
!! | ACCTGAGCATTTTGACCTGG+AGG | + | chr1.4:59579473-59579492 | None:intergenic | 50.0% |
!! | CACACCTGAGCATTTTGACC+TGG | + | chr1.4:59579476-59579495 | None:intergenic | 50.0% |
GAAGAAAGCCACGAGAGTGG+TGG | - | chr1.4:59578420-59578439 | MS.gene40015:CDS | 55.0% | |
GAAGCAGAAGAAGAGCCACG+TGG | + | chr1.4:59578456-59578475 | None:intergenic | 55.0% | |
TCTGTTCACCACCACTCTCG+TGG | + | chr1.4:59578431-59578450 | None:intergenic | 55.0% | |
TGCGAAGAAAGCCACGAGAG+TGG | - | chr1.4:59578417-59578436 | MS.gene40015:CDS | 55.0% | |
TGGAATTGGGTCTCACTCGC+TGG | + | chr1.4:59578616-59578635 | None:intergenic | 55.0% | |
! | GGTAGACGAGACCAAGTTGG+CGG | - | chr1.4:59579446-59579465 | MS.gene40015:CDS | 55.0% |
GGTGGTGAACAGAGTCCACG+TGG | - | chr1.4:59578438-59578457 | MS.gene40015:CDS | 60.0% | |
GACCTGGAGGACCGCCAACT+TGG | + | chr1.4:59579460-59579479 | None:intergenic | 65.0% | |
! | GACCAAGTTGGCGGTCCTCC+AGG | - | chr1.4:59579455-59579474 | MS.gene40015:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 59578396 | 59579496 | 59578396 | ID=MS.gene40015 |
chr1.4 | mRNA | 59578396 | 59579496 | 59578396 | ID=MS.gene40015.t1;Parent=MS.gene40015 |
chr1.4 | exon | 59579273 | 59579496 | 59579273 | ID=MS.gene40015.t1.exon1;Parent=MS.gene40015.t1 |
chr1.4 | CDS | 59579273 | 59579496 | 59579273 | ID=cds.MS.gene40015.t1;Parent=MS.gene40015.t1 |
chr1.4 | exon | 59578708 | 59578837 | 59578708 | ID=MS.gene40015.t1.exon2;Parent=MS.gene40015.t1 |
chr1.4 | CDS | 59578708 | 59578837 | 59578708 | ID=cds.MS.gene40015.t1;Parent=MS.gene40015.t1 |
chr1.4 | exon | 59578588 | 59578593 | 59578588 | ID=MS.gene40015.t1.exon3;Parent=MS.gene40015.t1 |
chr1.4 | CDS | 59578588 | 59578593 | 59578588 | ID=cds.MS.gene40015.t1;Parent=MS.gene40015.t1 |
chr1.4 | exon | 59578396 | 59578485 | 59578396 | ID=MS.gene40015.t1.exon4;Parent=MS.gene40015.t1 |
chr1.4 | CDS | 59578396 | 59578485 | 59578396 | ID=cds.MS.gene40015.t1;Parent=MS.gene40015.t1 |
Gene Sequence |
Protein sequence |