Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40038.t1 | XP_013468620.1 | 98.8 | 415 | 4 | 1 | 1 | 415 | 1 | 414 | 4.50E-192 | 680.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40038.t1 | Q940T9 | 40.0 | 70 | 42 | 0 | 297 | 366 | 275 | 344 | 1.7e-06 | 55.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40038.t1 | A0A072VLD7 | 98.8 | 415 | 4 | 1 | 1 | 415 | 1 | 414 | 3.2e-192 | 680.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene40038.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40038.t1 | MTR_1g073350 | 99.277 | 415 | 2 | 1 | 1 | 415 | 1 | 414 | 0.0 | 840 |
| MS.gene40038.t1 | MTR_1g044785 | 72.881 | 236 | 54 | 4 | 181 | 415 | 4 | 230 | 4.87e-113 | 330 |
| MS.gene40038.t1 | MTR_8g098725 | 39.873 | 158 | 73 | 5 | 209 | 361 | 133 | 273 | 1.24e-23 | 100 |
| MS.gene40038.t1 | MTR_8g098725 | 39.873 | 158 | 69 | 5 | 209 | 361 | 133 | 269 | 1.43e-23 | 100 |
| MS.gene40038.t1 | MTR_2g068730 | 56.164 | 73 | 32 | 0 | 298 | 370 | 144 | 216 | 3.25e-21 | 92.8 |
| MS.gene40038.t1 | MTR_5g010120 | 56.944 | 72 | 31 | 0 | 289 | 360 | 145 | 216 | 7.93e-20 | 88.6 |
| MS.gene40038.t1 | MTR_2g096080 | 45.918 | 98 | 51 | 1 | 265 | 362 | 105 | 200 | 2.71e-19 | 87.0 |
| MS.gene40038.t1 | MTR_4g061823 | 43.878 | 98 | 54 | 1 | 265 | 362 | 94 | 190 | 9.36e-19 | 85.5 |
| MS.gene40038.t1 | MTR_4g061910 | 43.878 | 98 | 54 | 1 | 265 | 362 | 94 | 190 | 9.36e-19 | 85.5 |
| MS.gene40038.t1 | MTR_1g008220 | 36.296 | 135 | 69 | 4 | 229 | 362 | 159 | 277 | 1.67e-16 | 79.7 |
| MS.gene40038.t1 | MTR_3g091340 | 60.000 | 55 | 22 | 0 | 313 | 367 | 197 | 251 | 2.16e-15 | 75.9 |
| MS.gene40038.t1 | MTR_3g091340 | 60.000 | 55 | 22 | 0 | 313 | 367 | 190 | 244 | 2.22e-15 | 75.9 |
| MS.gene40038.t1 | MTR_3g091340 | 60.000 | 55 | 22 | 0 | 313 | 367 | 226 | 280 | 4.53e-15 | 75.5 |
| MS.gene40038.t1 | MTR_3g105710 | 42.308 | 78 | 39 | 1 | 288 | 365 | 209 | 280 | 5.07e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40038.t1 | AT1G04500 | 51.069 | 421 | 147 | 15 | 9 | 415 | 2 | 377 | 1.33e-118 | 350 |
| MS.gene40038.t1 | AT1G04500 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 5.37e-118 | 349 |
| MS.gene40038.t1 | AT1G04500 | 51.069 | 421 | 147 | 15 | 9 | 415 | 11 | 386 | 5.37e-118 | 349 |
| MS.gene40038.t1 | AT2G33350 | 49.531 | 426 | 159 | 16 | 13 | 415 | 17 | 409 | 1.14e-101 | 308 |
| MS.gene40038.t1 | AT2G33350 | 49.531 | 426 | 159 | 16 | 13 | 415 | 6 | 398 | 1.69e-101 | 307 |
| MS.gene40038.t1 | AT2G33350 | 49.531 | 426 | 159 | 16 | 13 | 415 | 26 | 418 | 4.58e-101 | 307 |
| MS.gene40038.t1 | AT2G33350 | 48.946 | 427 | 161 | 16 | 13 | 415 | 17 | 410 | 7.33e-100 | 303 |
| MS.gene40038.t1 | AT1G04500 | 45.376 | 346 | 126 | 16 | 9 | 338 | 11 | 309 | 8.49e-70 | 225 |
| MS.gene40038.t1 | AT2G33350 | 43.678 | 348 | 141 | 15 | 13 | 338 | 17 | 331 | 8.96e-60 | 198 |
| MS.gene40038.t1 | AT5G41380 | 56.250 | 96 | 33 | 3 | 266 | 361 | 173 | 259 | 1.11e-23 | 100 |
| MS.gene40038.t1 | AT1G63820 | 40.833 | 120 | 69 | 1 | 264 | 381 | 137 | 256 | 3.31e-23 | 99.4 |
| MS.gene40038.t1 | AT3G12890 | 52.809 | 89 | 36 | 1 | 308 | 396 | 130 | 212 | 3.81e-22 | 95.1 |
| MS.gene40038.t1 | AT4G27900 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.66e-16 | 78.2 |
| MS.gene40038.t1 | AT4G27900 | 38.144 | 97 | 45 | 2 | 266 | 362 | 178 | 259 | 4.66e-16 | 78.2 |
| MS.gene40038.t1 | AT5G53420 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.26e-15 | 73.9 |
| MS.gene40038.t1 | AT5G53420 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.26e-15 | 73.9 |
| MS.gene40038.t1 | AT5G53420 | 41.667 | 96 | 38 | 2 | 266 | 361 | 106 | 183 | 3.26e-15 | 73.9 |
| MS.gene40038.t1 | AT5G59990 | 39.850 | 133 | 63 | 3 | 265 | 397 | 120 | 235 | 3.42e-15 | 75.1 |
| MS.gene40038.t1 | AT5G53420 | 65.957 | 47 | 16 | 0 | 315 | 361 | 216 | 262 | 6.70e-15 | 74.7 |
Find 78 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCCAAGTTTGAGATTTC+TGG | 0.139924 | 1.4:-59915146 | None:intergenic |
| TGATTCAGTTGCACCTCTTA+TGG | 0.196419 | 1.4:+59913982 | MS.gene40038:CDS |
| TTTGCAAAGAATGATGATTT+TGG | 0.203362 | 1.4:+59915488 | MS.gene40038:CDS |
| TCAGAATTCTGCAAAGCTTC+TGG | 0.225403 | 1.4:-59913572 | None:intergenic |
| TCCTGTAAACATTGATATAA+AGG | 0.285030 | 1.4:-59913491 | None:intergenic |
| GTTTAACCCTCCTGACCTTC+AGG | 0.295741 | 1.4:+59914282 | MS.gene40038:CDS |
| TCTCCTTCTTGCAATTATCT+TGG | 0.304557 | 1.4:+59914085 | MS.gene40038:CDS |
| TGATAGATTATTGCTATTGT+TGG | 0.307253 | 1.4:-59913747 | None:intergenic |
| TGGTTTGTTTGGTGGAAATA+TGG | 0.310217 | 1.4:+59914174 | MS.gene40038:CDS |
| TCCTTTATATCAATGTTTAC+AGG | 0.317206 | 1.4:+59913490 | MS.gene40038:CDS |
| TCGAAAATTCGAGCGCTAAG+AGG | 0.329398 | 1.4:-59913527 | None:intergenic |
| ACTGATAGTTCTGGTTTGTT+TGG | 0.336862 | 1.4:+59914163 | MS.gene40038:CDS |
| TAATATATTTGTTGCATATG+AGG | 0.345362 | 1.4:-59913633 | None:intergenic |
| GATTCAGTTGCACCTCTTAT+GGG | 0.348322 | 1.4:+59913983 | MS.gene40038:CDS |
| GCTTTGTCTACTGATAGTTC+TGG | 0.348575 | 1.4:+59914154 | MS.gene40038:CDS |
| AAACTTCAGCAAGAAAATTA+AGG | 0.349765 | 1.4:+59915250 | MS.gene40038:CDS |
| CTTGGAAGACTCCACTTTCA+AGG | 0.364962 | 1.4:+59915160 | MS.gene40038:CDS |
| CTTGATTATCAAGGAGATAA+TGG | 0.371169 | 1.4:+59914226 | MS.gene40038:CDS |
| AGAGGTGCAACTGAATCATT+TGG | 0.378768 | 1.4:-59913977 | None:intergenic |
| GTTGATATTGTTGTTTGTGC+TGG | 0.381949 | 1.4:-59913714 | None:intergenic |
| GCTACTAGTTGTTGATTCTC+AGG | 0.396916 | 1.4:-59915095 | None:intergenic |
| CAGAATTCTGCAAAGCTTCT+GGG | 0.401559 | 1.4:-59913571 | None:intergenic |
| GGGTTAAACACCCTCTGAAT+AGG | 0.414662 | 1.4:-59914268 | None:intergenic |
| AATGGAATAGTTGCATTTGA+AGG | 0.424110 | 1.4:-59915874 | None:intergenic |
| TGCAATTATCTTGGTCCTGC+CGG | 0.431147 | 1.4:+59914094 | MS.gene40038:CDS |
| GCAACTATTCCATTCAATCA+TGG | 0.437657 | 1.4:+59915883 | MS.gene40038:CDS |
| GATAGTTCTGGTTTGTTTGG+TGG | 0.449481 | 1.4:+59914166 | MS.gene40038:CDS |
| TAATTGCAAGAAGGAGAAGA+AGG | 0.453970 | 1.4:-59914079 | None:intergenic |
| AAAACAGGTGGTAATGATAA+GGG | 0.454857 | 1.4:-59914010 | None:intergenic |
| ATATTGTTGTTTGTGCTGGT+TGG | 0.455798 | 1.4:-59913710 | None:intergenic |
| ACAGCATGTTCATCCGTTGA+TGG | 0.462537 | 1.4:+59913935 | MS.gene40038:CDS |
| TTATCTTGGTCCTGCCGGTA+TGG | 0.463392 | 1.4:+59914099 | MS.gene40038:CDS |
| TGTGAAAGAGGAAGATGATA+TGG | 0.463481 | 1.4:+59915809 | MS.gene40038:CDS |
| GACACCAGAAATCTCAAACT+TGG | 0.464943 | 1.4:+59915142 | MS.gene40038:CDS |
| CGAAAATTCGAGCGCTAAGA+GGG | 0.464964 | 1.4:-59913526 | None:intergenic |
| TGAAGAAGAAGATGAAGAAG+AGG | 0.466581 | 1.4:+59915541 | MS.gene40038:CDS |
| GAAGACTCCACTTTCAAGGT+TGG | 0.473074 | 1.4:+59915164 | MS.gene40038:CDS |
| ACAGTCAATACCTGAAGGTC+AGG | 0.480367 | 1.4:-59914292 | None:intergenic |
| GATAGCAGACCTCGAGTTAG+AGG | 0.482620 | 1.4:+59915461 | MS.gene40038:CDS |
| GAATCAAATCCATGATTGAA+TGG | 0.483820 | 1.4:-59915892 | None:intergenic |
| CAGCATGTTCATCCGTTGAT+GGG | 0.484565 | 1.4:+59913936 | MS.gene40038:CDS |
| GCAGTAGTAAGAGAACCATT+AGG | 0.493364 | 1.4:-59914133 | None:intergenic |
| ATGGCGGCATACATGCCTAA+TGG | 0.504835 | 1.4:+59914118 | MS.gene40038:CDS |
| GTATGCATGCCGCAAAACTC+TGG | 0.507026 | 1.4:+59915436 | MS.gene40038:intron |
| TTGTCCTGATCCTATTCAGA+GGG | 0.518686 | 1.4:+59914258 | MS.gene40038:CDS |
| AACACCCTCTGAATAGGATC+AGG | 0.520235 | 1.4:-59914262 | None:intergenic |
| AATGAAGGAACATTGAAAGA+TGG | 0.520786 | 1.4:-59913836 | None:intergenic |
| GATAAGGGAGCTCCCATAAG+AGG | 0.524794 | 1.4:-59913995 | None:intergenic |
| ATGTATGCCGCCATACCGGC+AGG | 0.531779 | 1.4:-59914109 | None:intergenic |
| ACTACAGGTAGTTGTGAAAG+AGG | 0.540728 | 1.4:+59915797 | MS.gene40038:intron |
| GAGAATCAACAACTAGTAGC+TGG | 0.540899 | 1.4:+59915098 | MS.gene40038:CDS |
| ACACAAGAACTTGATTATCA+AGG | 0.541577 | 1.4:+59914217 | MS.gene40038:CDS |
| GAAGGAGAAGAAGGGTTCAA+AGG | 0.541723 | 1.4:-59914070 | None:intergenic |
| GAAAACTTTCTGTTGAACAA+AGG | 0.552214 | 1.4:+59915186 | MS.gene40038:CDS |
| GGGTTCAAAGGAACATAAGA+AGG | 0.558201 | 1.4:-59914058 | None:intergenic |
| GATATATTTGCTCATATCAG+TGG | 0.567084 | 1.4:+59915843 | MS.gene40038:CDS |
| AGGCATGTATGCCGCCATAC+CGG | 0.574531 | 1.4:-59914113 | None:intergenic |
| TCTAACTCGAGGTCTGCTAT+CGG | 0.575030 | 1.4:-59915459 | None:intergenic |
| CAACAACTAGTAGCTGGTGC+TGG | 0.575480 | 1.4:+59915104 | MS.gene40038:CDS |
| GATGTGACTGGAAGGAATGA+AGG | 0.578846 | 1.4:-59913851 | None:intergenic |
| AATTGCAAGAAGGAGAAGAA+GGG | 0.582488 | 1.4:-59914078 | None:intergenic |
| ACTTGCTGTGATGATGTGAC+TGG | 0.583948 | 1.4:-59913863 | None:intergenic |
| TCTTGGTCCTGCCGGTATGG+CGG | 0.591145 | 1.4:+59914102 | MS.gene40038:CDS |
| AGAAGCTTTGCAGAATTCTG+AGG | 0.591368 | 1.4:+59913574 | MS.gene40038:CDS |
| GTCAATACCTGAAGGTCAGG+AGG | 0.601952 | 1.4:-59914289 | None:intergenic |
| ATTGTCCTGATCCTATTCAG+AGG | 0.615011 | 1.4:+59914257 | MS.gene40038:CDS |
| TGATAGTGAGAAATCTATTG+AGG | 0.622836 | 1.4:-59913813 | None:intergenic |
| GGACCAAGATAATTGCAAGA+AGG | 0.631874 | 1.4:-59914088 | None:intergenic |
| GCAAATCGTCCTCTAACTCG+AGG | 0.634840 | 1.4:-59915470 | None:intergenic |
| GATATGAGCAAATATATCTG+AGG | 0.650959 | 1.4:-59915838 | None:intergenic |
| TCAATACCTGAAGGTCAGGA+GGG | 0.652626 | 1.4:-59914288 | None:intergenic |
| GCTGTGATGATGTGACTGGA+AGG | 0.653513 | 1.4:-59913859 | None:intergenic |
| GTAAGTTGAACATGATGATG+AGG | 0.662251 | 1.4:-59913914 | None:intergenic |
| GATGCAAATAGAACTGCTAG+TGG | 0.664408 | 1.4:+59915512 | MS.gene40038:CDS |
| ATACTGCGAAAACCCATCAA+CGG | 0.666515 | 1.4:-59913948 | None:intergenic |
| TGAGATTTCTGGTGTCAGAG+TGG | 0.672060 | 1.4:-59915135 | None:intergenic |
| TAAAGGAAATGTAAACAACA+TGG | 0.694278 | 1.4:-59913474 | None:intergenic |
| TAGCAATAGCAATAACACAG+TGG | 0.772848 | 1.4:+59913679 | MS.gene40038:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATGTTTCAAAAAT+CGG | - | chr1.4:59914732-59914751 | None:intergenic | 10.0% |
| !!! | ACAATAATAATTTATTTTTC+AGG | + | chr1.4:59915064-59915083 | MS.gene40038:intron | 10.0% |
| !! | AAAAAGGAAAAATACAAAAA+TGG | - | chr1.4:59914615-59914634 | None:intergenic | 15.0% |
| !! | AATTTATATGTAACATGATA+AGG | - | chr1.4:59915327-59915346 | None:intergenic | 15.0% |
| !! | TATCTACTTATTTATTTGAT+TGG | + | chr1.4:59915739-59915758 | MS.gene40038:intron | 15.0% |
| !! | TCATTCATTAAAAATAACTA+TGG | - | chr1.4:59914393-59914412 | None:intergenic | 15.0% |
| !! | TTAAAAATAACTATGGAAAA+TGG | - | chr1.4:59914386-59914405 | None:intergenic | 15.0% |
| !! | AAAAAAGTAGCATAGTATAT+TGG | + | chr1.4:59914907-59914926 | MS.gene40038:intron | 20.0% |
| !! | AAAAATACAAAAATGGAAAC+CGG | - | chr1.4:59914608-59914627 | None:intergenic | 20.0% |
| !! | TTACAAGTTCATATTTAACT+TGG | + | chr1.4:59915616-59915635 | MS.gene40038:intron | 20.0% |
| !!! | AATTAAGTTGTTTATCCAAA+CGG | - | chr1.4:59915650-59915669 | None:intergenic | 20.0% |
| !!! | ATAAGCTTTTTACATATTTG+TGG | - | chr1.4:59914801-59914820 | None:intergenic | 20.0% |
| !!! | TAATATATTTGTTGCATATG+AGG | - | chr1.4:59913636-59913655 | None:intergenic | 20.0% |
| ! | AAACTTCAGCAAGAAAATTA+AGG | + | chr1.4:59915250-59915269 | MS.gene40038:CDS | 25.0% |
| ! | AAATGTTTCAAAAATCGGAT+TGG | - | chr1.4:59914727-59914746 | None:intergenic | 25.0% |
| ! | AACCAAATGAACAAGTAAAA+AGG | - | chr1.4:59914631-59914650 | None:intergenic | 25.0% |
| ! | AAGATTAACAACCTTATAGT+TGG | - | chr1.4:59914451-59914470 | None:intergenic | 25.0% |
| ! | TCCTGTAAACATTGATATAA+AGG | - | chr1.4:59913494-59913513 | None:intergenic | 25.0% |
| ! | TCCTTTATATCAATGTTTAC+AGG | + | chr1.4:59913490-59913509 | MS.gene40038:CDS | 25.0% |
| ! | TTATATTCAGATTCAGATTC+TGG | - | chr1.4:59915045-59915064 | None:intergenic | 25.0% |
| ! | TTTGTCATCCAATTCAATTA+TGG | + | chr1.4:59914652-59914671 | MS.gene40038:intron | 25.0% |
| !! | AGGTAATTTCTTTTTGCAAA+AGG | + | chr1.4:59914765-59914784 | MS.gene40038:intron | 25.0% |
| !! | GTTTAAAGTTTCCAACTATA+AGG | + | chr1.4:59914437-59914456 | MS.gene40038:intron | 25.0% |
| !! | TGATAGATTATTGCTATTGT+TGG | - | chr1.4:59913750-59913769 | None:intergenic | 25.0% |
| !! | TTCCTTTTTACTTGTTCATT+TGG | + | chr1.4:59914626-59914645 | MS.gene40038:intron | 25.0% |
| !! | TTTGCAAAGAATGATGATTT+TGG | + | chr1.4:59915488-59915507 | MS.gene40038:CDS | 25.0% |
| !!! | ACTATGCTACTTTTTTTTGT+AGG | - | chr1.4:59914903-59914922 | None:intergenic | 25.0% |
| !!! | ATTTTGGCATATATTCTATG+AGG | - | chr1.4:59914825-59914844 | None:intergenic | 25.0% |
| !!! | TCAAGCAATGTTTTTAAAAC+TGG | + | chr1.4:59914478-59914497 | MS.gene40038:intron | 25.0% |
| !!! | TTATTTTAAAGCTTCGTAAG+AGG | + | chr1.4:59914745-59914764 | MS.gene40038:intron | 25.0% |
| AATGAAGGAACATTGAAAGA+TGG | - | chr1.4:59913839-59913858 | None:intergenic | 30.0% | |
| AATGGAATAGTTGCATTTGA+AGG | - | chr1.4:59915877-59915896 | None:intergenic | 30.0% | |
| ACACAAGAACTTGATTATCA+AGG | + | chr1.4:59914217-59914236 | MS.gene40038:CDS | 30.0% | |
| ACTTTAGGTCATTGTTCAAT+TGG | - | chr1.4:59914692-59914711 | None:intergenic | 30.0% | |
| CAGTTCAACCATAATTGAAT+TGG | - | chr1.4:59914663-59914682 | None:intergenic | 30.0% | |
| CTTGATTATCAAGGAGATAA+TGG | + | chr1.4:59914226-59914245 | MS.gene40038:CDS | 30.0% | |
| GAAAACTTTCTGTTGAACAA+AGG | + | chr1.4:59915186-59915205 | MS.gene40038:CDS | 30.0% | |
| GATATATTTGCTCATATCAG+TGG | + | chr1.4:59915843-59915862 | MS.gene40038:CDS | 30.0% | |
| GATATGAGCAAATATATCTG+AGG | - | chr1.4:59915841-59915860 | None:intergenic | 30.0% | |
| TATGAACTTGTAAAGTGTGT+TGG | - | chr1.4:59915609-59915628 | None:intergenic | 30.0% | |
| ! | AAAAACAGGTGGTAATGATA+AGG | - | chr1.4:59914014-59914033 | None:intergenic | 30.0% |
| ! | AAAACAGGTGGTAATGATAA+GGG | - | chr1.4:59914013-59914032 | None:intergenic | 30.0% |
| ! | ACGGACTACAATACAAAAAT+GGG | - | chr1.4:59914560-59914579 | None:intergenic | 30.0% |
| ! | CATTTGATAACTGTAACTAC+AGG | + | chr1.4:59915782-59915801 | MS.gene40038:intron | 30.0% |
| ! | TGATAGTGAGAAATCTATTG+AGG | - | chr1.4:59913816-59913835 | None:intergenic | 30.0% |
| ! | TTTCTTTTTGCAAAAGGTCA+TGG | + | chr1.4:59914771-59914790 | MS.gene40038:intron | 30.0% |
| ! | TTTGGTGGAAATATGGTTTT+TGG | + | chr1.4:59914181-59914200 | MS.gene40038:CDS | 30.0% |
| !! | AACGGACTACAATACAAAAA+TGG | - | chr1.4:59914561-59914580 | None:intergenic | 30.0% |
| !! | GTTCATATTTAACTTGGCTA+CGG | + | chr1.4:59915622-59915641 | MS.gene40038:intron | 30.0% |
| AAGAACCATCCATATGAAGT+AGG | - | chr1.4:59915007-59915026 | None:intergenic | 35.0% | |
| AATGTCCTACTTCATATGGA+TGG | + | chr1.4:59914999-59915018 | MS.gene40038:intron | 35.0% | |
| AATTGCAAGAAGGAGAAGAA+GGG | - | chr1.4:59914081-59914100 | None:intergenic | 35.0% | |
| AGGTGAGACTGTGATTATAA+AGG | - | chr1.4:59914883-59914902 | None:intergenic | 35.0% | |
| ATATGCAGTAAGAAGAGAAG+TGG | - | chr1.4:59915378-59915397 | None:intergenic | 35.0% | |
| ATGCAATCCTCTTCAAAAAC+AGG | - | chr1.4:59914028-59914047 | None:intergenic | 35.0% | |
| CAGAAATGTCCTACTTCATA+TGG | + | chr1.4:59914995-59915014 | MS.gene40038:intron | 35.0% | |
| CAGTTGAAAATCGACCAATT+TGG | + | chr1.4:59914521-59914540 | MS.gene40038:intron | 35.0% | |
| CGGTGATATAACCAGTTTAA+CGG | - | chr1.4:59914579-59914598 | None:intergenic | 35.0% | |
| GCAACTATTCCATTCAATCA+TGG | + | chr1.4:59915883-59915902 | MS.gene40038:CDS | 35.0% | |
| GGTGAGACTGTGATTATAAA+GGG | - | chr1.4:59914882-59914901 | None:intergenic | 35.0% | |
| GTTCTGTTTGATTATGCATG+TGG | - | chr1.4:59915298-59915317 | None:intergenic | 35.0% | |
| TAATTGCAAGAAGGAGAAGA+AGG | - | chr1.4:59914082-59914101 | None:intergenic | 35.0% | |
| TAGAAACAGTCAATACCTGA+AGG | - | chr1.4:59914300-59914319 | None:intergenic | 35.0% | |
| TAGCAATAGCAATAACACAG+TGG | + | chr1.4:59913679-59913698 | MS.gene40038:CDS | 35.0% | |
| TCTCCTTCTTGCAATTATCT+TGG | + | chr1.4:59914085-59914104 | MS.gene40038:CDS | 35.0% | |
| TGAAGAAGAAGATGAAGAAG+AGG | + | chr1.4:59915541-59915560 | MS.gene40038:CDS | 35.0% | |
| TGGAGATCTTGTGAAACTTT+AGG | - | chr1.4:59914707-59914726 | None:intergenic | 35.0% | |
| TGTATTGTAGTCCGTTAAAC+TGG | + | chr1.4:59914565-59914584 | MS.gene40038:intron | 35.0% | |
| TGTGAAAGAGGAAGATGATA+TGG | + | chr1.4:59915809-59915828 | MS.gene40038:CDS | 35.0% | |
| TTTCAACTGATTGAATCGAC+TGG | - | chr1.4:59914510-59914529 | None:intergenic | 35.0% | |
| ! | AAAATGGAAACCGGTTTCAA+CGG | - | chr1.4:59914599-59914618 | None:intergenic | 35.0% |
| ! | AAGTTTTCCAACCTTGAAAG+TGG | - | chr1.4:59915174-59915193 | None:intergenic | 35.0% |
| ! | GTAAGTTGAACATGATGATG+AGG | - | chr1.4:59913917-59913936 | None:intergenic | 35.0% |
| ! | TCAGATTCAGATTCTGGAAA+GGG | - | chr1.4:59915039-59915058 | None:intergenic | 35.0% |
| ! | TCTTCCAAGTTTGAGATTTC+TGG | - | chr1.4:59915149-59915168 | None:intergenic | 35.0% |
| ! | TTCAGATTCAGATTCTGGAA+AGG | - | chr1.4:59915040-59915059 | None:intergenic | 35.0% |
| !! | ACTGATAGTTCTGGTTTGTT+TGG | + | chr1.4:59914163-59914182 | MS.gene40038:CDS | 35.0% |
| !! | ATATTGTTGTTTGTGCTGGT+TGG | - | chr1.4:59913713-59913732 | None:intergenic | 35.0% |
| !! | GTTGATATTGTTGTTTGTGC+TGG | - | chr1.4:59913717-59913736 | None:intergenic | 35.0% |
| !! | TGGTTTGTTTGGTGGAAATA+TGG | + | chr1.4:59914174-59914193 | MS.gene40038:CDS | 35.0% |
| !!! | ATTACCACCTGTTTTTGAAG+AGG | + | chr1.4:59914018-59914037 | MS.gene40038:CDS | 35.0% |
| !!! | GCTACTGTTTTGATGGATTT+TGG | - | chr1.4:59914841-59914860 | None:intergenic | 35.0% |
| AAATCGACCAATTTGGCAGT+TGG | + | chr1.4:59914528-59914547 | MS.gene40038:intron | 40.0% | |
| ACTACAGGTAGTTGTGAAAG+AGG | + | chr1.4:59915797-59915816 | MS.gene40038:intron | 40.0% | |
| AGAAGCTTTGCAGAATTCTG+AGG | + | chr1.4:59913574-59913593 | MS.gene40038:CDS | 40.0% | |
| AGGGTATGATATGCTATTGC+TGG | - | chr1.4:59914863-59914882 | None:intergenic | 40.0% | |
| ATACTGCGAAAACCCATCAA+CGG | - | chr1.4:59913951-59913970 | None:intergenic | 40.0% | |
| ATAGTATATTGGCCAGTAGC+AGG | + | chr1.4:59914918-59914937 | MS.gene40038:intron | 40.0% | |
| ATTGTCCTGATCCTATTCAG+AGG | + | chr1.4:59914257-59914276 | MS.gene40038:CDS | 40.0% | |
| CAATCCTCTTCAAAAACAGG+TGG | - | chr1.4:59914025-59914044 | None:intergenic | 40.0% | |
| CAGAATTCTGCAAAGCTTCT+GGG | - | chr1.4:59913574-59913593 | None:intergenic | 40.0% | |
| CGGCATGCATACTACATATT+TGG | - | chr1.4:59915428-59915447 | None:intergenic | 40.0% | |
| GACAAAACCAACTGCCAAAT+TGG | - | chr1.4:59914538-59914557 | None:intergenic | 40.0% | |
| GACACCAGAAATCTCAAACT+TGG | + | chr1.4:59915142-59915161 | MS.gene40038:CDS | 40.0% | |
| GAGAATCAACAACTAGTAGC+TGG | + | chr1.4:59915098-59915117 | MS.gene40038:CDS | 40.0% | |
| GATGCAAATAGAACTGCTAG+TGG | + | chr1.4:59915512-59915531 | MS.gene40038:CDS | 40.0% | |
| GATTCAGTTGCACCTCTTAT+GGG | + | chr1.4:59913983-59914002 | MS.gene40038:CDS | 40.0% | |
| GCAGTAGTAAGAGAACCATT+AGG | - | chr1.4:59914136-59914155 | None:intergenic | 40.0% | |
| GCTTTGTCTACTGATAGTTC+TGG | + | chr1.4:59914154-59914173 | MS.gene40038:CDS | 40.0% | |
| GGACCAAGATAATTGCAAGA+AGG | - | chr1.4:59914091-59914110 | None:intergenic | 40.0% | |
| GGGTTCAAAGGAACATAAGA+AGG | - | chr1.4:59914061-59914080 | None:intergenic | 40.0% | |
| GGTTATATCACCGTTGAAAC+CGG | + | chr1.4:59914586-59914605 | MS.gene40038:intron | 40.0% | |
| TCAGAATTCTGCAAAGCTTC+TGG | - | chr1.4:59913575-59913594 | None:intergenic | 40.0% | |
| TGATTCAGTTGCACCTCTTA+TGG | + | chr1.4:59913982-59914001 | MS.gene40038:CDS | 40.0% | |
| TTGTCCTGATCCTATTCAGA+GGG | + | chr1.4:59914258-59914277 | MS.gene40038:CDS | 40.0% | |
| ! | AGAGGTGCAACTGAATCATT+TGG | - | chr1.4:59913980-59913999 | None:intergenic | 40.0% |
| ! | CTTTTTGCAAAAGGTCATGG+TGG | + | chr1.4:59914774-59914793 | MS.gene40038:intron | 40.0% |
| !! | ATTGCTGGCTACTGTTTTGA+TGG | - | chr1.4:59914848-59914867 | None:intergenic | 40.0% |
| !! | GATAGTTCTGGTTTGTTTGG+TGG | + | chr1.4:59914166-59914185 | MS.gene40038:CDS | 40.0% |
| !! | GCTACTAGTTGTTGATTCTC+AGG | - | chr1.4:59915098-59915117 | None:intergenic | 40.0% |
| AACACCCTCTGAATAGGATC+AGG | - | chr1.4:59914265-59914284 | None:intergenic | 45.0% | |
| ACAGCATGTTCATCCGTTGA+TGG | + | chr1.4:59913935-59913954 | MS.gene40038:CDS | 45.0% | |
| ACAGTCAATACCTGAAGGTC+AGG | - | chr1.4:59914295-59914314 | None:intergenic | 45.0% | |
| ATGTGATTCCTTCCTGCTAC+TGG | - | chr1.4:59914933-59914952 | None:intergenic | 45.0% | |
| CAGCATGTTCATCCGTTGAT+GGG | + | chr1.4:59913936-59913955 | MS.gene40038:CDS | 45.0% | |
| CGAAAATTCGAGCGCTAAGA+GGG | - | chr1.4:59913529-59913548 | None:intergenic | 45.0% | |
| CTTGGAAGACTCCACTTTCA+AGG | + | chr1.4:59915160-59915179 | MS.gene40038:CDS | 45.0% | |
| GAAGACTCCACTTTCAAGGT+TGG | + | chr1.4:59915164-59915183 | MS.gene40038:CDS | 45.0% | |
| GAAGGAGAAGAAGGGTTCAA+AGG | - | chr1.4:59914073-59914092 | None:intergenic | 45.0% | |
| GATGTGACTGGAAGGAATGA+AGG | - | chr1.4:59913854-59913873 | None:intergenic | 45.0% | |
| GGGTTAAACACCCTCTGAAT+AGG | - | chr1.4:59914271-59914290 | None:intergenic | 45.0% | |
| TATATTGGCCAGTAGCAGGA+AGG | + | chr1.4:59914922-59914941 | MS.gene40038:intron | 45.0% | |
| TCAATACCTGAAGGTCAGGA+GGG | - | chr1.4:59914291-59914310 | None:intergenic | 45.0% | |
| TCGAAAATTCGAGCGCTAAG+AGG | - | chr1.4:59913530-59913549 | None:intergenic | 45.0% | |
| TCTAACTCGAGGTCTGCTAT+CGG | - | chr1.4:59915462-59915481 | None:intergenic | 45.0% | |
| TGCAATTATCTTGGTCCTGC+CGG | + | chr1.4:59914094-59914113 | MS.gene40038:CDS | 45.0% | |
| !! | ACTTGCTGTGATGATGTGAC+TGG | - | chr1.4:59913866-59913885 | None:intergenic | 45.0% |
| !! | TGAGATTTCTGGTGTCAGAG+TGG | - | chr1.4:59915138-59915157 | None:intergenic | 45.0% |
| !!! | TTTTATTATCAAATTTTATT+CGG | - | chr1.4:59914963-59914982 | None:intergenic | 5.0% |
| ATGGCGGCATACATGCCTAA+TGG | + | chr1.4:59914118-59914137 | MS.gene40038:CDS | 50.0% | |
| CAACAACTAGTAGCTGGTGC+TGG | + | chr1.4:59915104-59915123 | MS.gene40038:CDS | 50.0% | |
| GATAAGGGAGCTCCCATAAG+AGG | - | chr1.4:59913998-59914017 | None:intergenic | 50.0% | |
| GATAGCAGACCTCGAGTTAG+AGG | + | chr1.4:59915461-59915480 | MS.gene40038:CDS | 50.0% | |
| GCAAATCGTCCTCTAACTCG+AGG | - | chr1.4:59915473-59915492 | None:intergenic | 50.0% | |
| GTATGCATGCCGCAAAACTC+TGG | + | chr1.4:59915436-59915455 | MS.gene40038:intron | 50.0% | |
| GTCAATACCTGAAGGTCAGG+AGG | - | chr1.4:59914292-59914311 | None:intergenic | 50.0% | |
| GTTTAACCCTCCTGACCTTC+AGG | + | chr1.4:59914282-59914301 | MS.gene40038:CDS | 50.0% | |
| TTATCTTGGTCCTGCCGGTA+TGG | + | chr1.4:59914099-59914118 | MS.gene40038:CDS | 50.0% | |
| ! | GCTGTGATGATGTGACTGGA+AGG | - | chr1.4:59913862-59913881 | None:intergenic | 50.0% |
| ! | TGCTATCGGCCAGAGTTTTG+CGG | - | chr1.4:59915448-59915467 | None:intergenic | 50.0% |
| AACTTGGCTACGGCACCGTT+TGG | + | chr1.4:59915632-59915651 | MS.gene40038:intron | 55.0% | |
| AGGCATGTATGCCGCCATAC+CGG | - | chr1.4:59914116-59914135 | None:intergenic | 55.0% | |
| ATGTATGCCGCCATACCGGC+AGG | - | chr1.4:59914112-59914131 | None:intergenic | 60.0% | |
| TCTTGGTCCTGCCGGTATGG+CGG | + | chr1.4:59914102-59914121 | MS.gene40038:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 59913476 | 59915911 | 59913476 | ID=MS.gene40038 |
| chr1.4 | mRNA | 59913476 | 59915911 | 59913476 | ID=MS.gene40038.t1;Parent=MS.gene40038 |
| chr1.4 | exon | 59913476 | 59914303 | 59913476 | ID=MS.gene40038.t1.exon1;Parent=MS.gene40038.t1 |
| chr1.4 | CDS | 59913476 | 59914303 | 59913476 | ID=cds.MS.gene40038.t1;Parent=MS.gene40038.t1 |
| chr1.4 | exon | 59915086 | 59915271 | 59915086 | ID=MS.gene40038.t1.exon2;Parent=MS.gene40038.t1 |
| chr1.4 | CDS | 59915086 | 59915271 | 59915086 | ID=cds.MS.gene40038.t1;Parent=MS.gene40038.t1 |
| chr1.4 | exon | 59915437 | 59915562 | 59915437 | ID=MS.gene40038.t1.exon3;Parent=MS.gene40038.t1 |
| chr1.4 | CDS | 59915437 | 59915562 | 59915437 | ID=cds.MS.gene40038.t1;Parent=MS.gene40038.t1 |
| chr1.4 | exon | 59915804 | 59915911 | 59915804 | ID=MS.gene40038.t1.exon4;Parent=MS.gene40038.t1 |
| chr1.4 | CDS | 59915804 | 59915911 | 59915804 | ID=cds.MS.gene40038.t1;Parent=MS.gene40038.t1 |
| Gene Sequence |
| Protein sequence |
