AlfalfaGEDB | MS.gene40155

M. sativa cultivar XinJiangDaYe / MS.gene40155

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40155.t1	XP_013457148.1	95.8	429	18	0	1	429	1	429	7.50E-235	822.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40155.t1	Q9FIU5	61.8	356	133	3	33	386	27	381	6.0e-124	445.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40155.t1	A0A072UN02	95.8	429	18	0	1	429	1	429	5.4e-235	822.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40155.t1	MTR_4g092070	95.804	429	18	0	1	429	1	429	0.0	857
MS.gene40155.t1	MTR_2g082430	58.612	389	157	4	27	413	22	408	2.41e-160	459
MS.gene40155.t1	MTR_6g016040	46.939	392	195	7	6	391	1	385	1.93e-112	337
MS.gene40155.t1	MTR_4g085810	44.876	283	145	4	107	381	314	593	8.17e-77	252
MS.gene40155.t1	MTR_7g061220	45.993	287	138	6	108	381	88	370	7.74e-71	235
MS.gene40155.t1	MTR_3g062590	42.581	310	166	6	97	396	599	906	3.84e-70	239
MS.gene40155.t1	MTR_1g066950	43.408	311	159	6	108	405	588	894	1.74e-69	236
MS.gene40155.t1	MTR_2g084120	40.252	318	168	7	98	396	70	384	1.76e-69	226
MS.gene40155.t1	MTR_2g022810	42.034	295	146	7	109	384	68	356	1.85e-68	223
MS.gene40155.t1	MTR_7g083500	41.456	316	167	7	90	387	44	359	1.99e-68	223

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40155.t1	AT5G54590	60.800	375	145	2	13	386	8	381	4.01e-167	476
MS.gene40155.t1	AT5G54590	60.800	375	145	2	13	386	8	381	4.01e-167	476
MS.gene40155.t1	AT5G54590	60.800	375	145	2	13	386	8	381	4.01e-167	476
MS.gene40155.t1	AT5G15730	50.000	328	153	7	69	390	62	384	1.38e-104	317
MS.gene40155.t1	AT5G15730	50.000	328	153	7	69	390	62	384	1.38e-104	317
MS.gene40155.t1	AT5G15730	49.847	327	153	7	69	390	62	382	7.62e-104	315
MS.gene40155.t1	AT5G54590	58.182	220	90	2	13	231	8	226	1.01e-82	255
MS.gene40155.t1	AT3G19300	42.657	286	153	3	104	381	312	594	4.78e-73	242
MS.gene40155.t1	AT1G20650	39.692	325	178	6	104	415	62	381	8.80e-71	228
MS.gene40155.t1	AT1G49730	42.105	285	157	2	107	383	346	630	1.24e-70	236

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Find 97 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTATAGTTT+CGG	0.321292	4.2:-20509832	MS.gene40155:CDS
AAAATCATGAGCCATTGAGC+TGG	0.533333	4.2:-20510556	MS.gene40155:CDS
AAACAGGACCAAATGCTCCA+TGG	0.621902	4.2:+20511400	None:intergenic
AAAGCCTATGCATATTCCTA+TGG	0.531162	4.2:+20511817	None:intergenic
AAAGTGAGGACAAGATTGCA+TGG	0.584798	4.2:-20509388	MS.gene40155:CDS
AACACGCCTTTCTGGTTAGA+AGG	0.374544	4.2:-20511602	MS.gene40155:CDS
AACATACTTGTAAGAATATT+TGG	0.053872	4.2:+20511541	None:intergenic
AAGAATCTTGTGGGTTTGGT+GGG	0.494345	4.2:-20510827	MS.gene40155:CDS
AAGAATGCTGTCTCAGTATG+TGG	0.545605	4.2:-20511569	MS.gene40155:CDS
AAGTGAGGACAAGATTGCAT+GGG	0.628499	4.2:-20509387	MS.gene40155:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACAGTTGAAGATCATATTGT+TGG	+	chr4.2:20509995-20510014	None:intergenic	30.0%
ACTAGGTATTAATGTCTTCT+CGG	+	chr4.2:20510882-20510901	None:intergenic	30.0%
AGTTCACACAAAGATGAATA+GGG	-	chr4.2:20510677-20510696	MS.gene40155:intron	30.0%
ATAACTATGAACTAACAGTG+TGG	-	chr4.2:20511324-20511343	MS.gene40155:CDS	30.0%
CATTGTTTACTTCCTCTTAA+AGG	+	chr4.2:20510842-20510861	None:intergenic	30.0%
CTTTACATTTACATGAGCAA+CGG	-	chr4.2:20510190-20510209	MS.gene40155:intron	30.0%
GATGTAATCTTCCAAGTAAT+AGG	+	chr4.2:20510114-20510133	None:intergenic	30.0%
GCATCATCTTTACAAAAACT+AGG	+	chr4.2:20510899-20510918	None:intergenic	30.0%
GTTCAATATGGACAAAAACA+AGG	+	chr4.2:20510948-20510967	None:intergenic	30.0%
TAGTTCACACAAAGATGAAT+AGG	-	chr4.2:20510676-20510695	MS.gene40155:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.2	gene	20509106	20511879	20509106	ID=MS.gene40155
chr4.2	mRNA	20509106	20511879	20509106	ID=MS.gene40155.t1;Parent=MS.gene40155
chr4.2	exon	20511548	20511879	20511548	ID=MS.gene40155.t1.exon1;Parent=MS.gene40155.t1
chr4.2	CDS	20511548	20511879	20511548	ID=cds.MS.gene40155.t1;Parent=MS.gene40155.t1
chr4.2	exon	20511311	20511464	20511311	ID=MS.gene40155.t1.exon2;Parent=MS.gene40155.t1
chr4.2	CDS	20511311	20511464	20511311	ID=cds.MS.gene40155.t1;Parent=MS.gene40155.t1
chr4.2	exon	20510750	20510876	20510750	ID=MS.gene40155.t1.exon3;Parent=MS.gene40155.t1
chr4.2	CDS	20510750	20510876	20510750	ID=cds.MS.gene40155.t1;Parent=MS.gene40155.t1
chr4.2	exon	20510496	20510581	20510496	ID=MS.gene40155.t1.exon4;Parent=MS.gene40155.t1
chr4.2	CDS	20510496	20510581	20510496	ID=cds.MS.gene40155.t1;Parent=MS.gene40155.t1
chr4.2	exon	20510328	20510399	20510328	ID=MS.gene40155.t1.exon5;Parent=MS.gene40155.t1
chr4.2	CDS	20510328	20510399	20510328	ID=cds.MS.gene40155.t1;Parent=MS.gene40155.t1
chr4.2	exon	20509765	20509968	20509765	ID=MS.gene40155.t1.exon6;Parent=MS.gene40155.t1
chr4.2	CDS	20509765	20509968	20509765	ID=cds.MS.gene40155.t1;Parent=MS.gene40155.t1
chr4.2	exon	20509106	20509420	20509106	ID=MS.gene40155.t1.exon7;Parent=MS.gene40155.t1
chr4.2	CDS	20509106	20509420	20509106	ID=cds.MS.gene40155.t1;Parent=MS.gene40155.t1

Gene Sequence

>MS.gene40155

ATGAATTCGCACGAGATGAGCAGAACTCTTTTAATTTTGGCCATAGGAATATGCATAGGCTTTGTGATTGGAGCTGGTTTGGTATTTTCAATTTTAGTCTTCTGCAGGCCTGGAAGGAAGCGTGTAGAGGTGGAGAAGAGCGGTCCTCTGAGAACCGAGGCCATTAATGTTCATGGCAAAGGGGCTGATTCCAGTGTAACATCATTATCAGACTCCAACGCGACTTTTGAGTCACCAAGAACATCGGAATGGAGTAACACGCCTTTCTGGTTAGAAGGACTTAGGAGGAAGAATGCTGTCTCAGTATGTGGAATTCCCAAATATTCTTACAAGTATGTTAATTTTCATTGCACTGTTGTCTTATGTTGTTGATTTATATTTCTCTTTTTGTGTAACCTTGTCACTCATTTTTCAGAGATATAGAAAAGGCTACATCTAATTTCACAACGATCATAGGCCATGGAGCATTTGGTCCTGTTTACAAAGCAATCATGCCTACAGGCGAGGCAGTTGCGGTTAAAGTTCTCGGTGCTAATTCAAGACAAGGAGAACAAGAATTTTTAACTGAGGTAATACCTGATGAGTATACTTATGCTTCTATCAATATGTTTACATCTATATGTCCATGTAATTTTCTTTGACAGTTTGCAATTGTTGAATGAAGAAACATCCTTTCTGTATAGCATTGTGGCACTATTATTAATTGTACTATGTACTTTTATTTTATGTACCTACTTTTATAACTCCTATAATTGTTATGAATATTACATAAAAAAACTCGCTAAGCCAATGCAAATTCTGTCATGTACAAGTTCTTGTACTATATTTTCCTGTAACAATCATGGTAGGAGTATAGTATTACTATCTTGCCAATTTCTTTTAATTTCCAACAATATGATCTTCAACTGTTCTCTACAACTTTTTTGTGAAGGGACTTAAAAGATAGTCTTATGAAATTGGATACTAAAACAATTTATATTCTCTCAAACTTTCCTGTTAGCAGGTCCTATTACTTGGAAGATTACATCATAAGAATCTTGTGGGTTTGGTGGGATATGCTGCAGAAAGAGGAAAGCACATGCTTCTTTACATTTACATGAGCAACGGCAGTCTTGCTTCTCATTTGTATGGTAAGAAAAAGAGTAATTCTTGTCGTTTTATATTTGCAGGGAAAATTGTGTGGATATTTTCTCAGTGGTATACATGTTCTCAGCATTCAATTGCTCAGTAATAGCTAAGAATTTTCGCTTGAACTCTTCTGGTTATCCCTTTTACTTACCTTTTTGTTGATGATACAGGCGAAAATCATGAGCCATTGAGCTGGAATTTGAGACTTAGCATAGCACTAGATGTTGCAAGGGTGATGGAATATCTACATTATTCGGTATTCAGTATACTCATATTTTTTGTTTACACATAGGGAACAGACAACAAGTTTACTTTTGGCTTTTTATTTTTCTCAATAAATAATTCATCGCAGATCGATCCTCCTATCGTGCACCGTGACATCAAGTCTTCAAACATTCTATTAGACAAGTTTATGAAAGCCAAGGTAACCGACCTTTGCATTTAGTTCACACAAAGATGAATAGGGCTTCAATGATACTTTAGAACATTCATTGGTGCACAATATCTTTTCTCCTGTAATTTTTTCTTTTATTTATTCATCTCAATCTCTACATTCTCCTTTTTTTTTTTTAATATATATTTCACCAAAACTGTATTATCATAAACCTTTAAGAGGAAGTAAACAATGTCATAGTTTTCTTGATCCCGAGAAGACATTAATACCTAGTTTTTGTAAAGATGATGCTGCCATTTTGCTATTCCATCATATCCCCTTGTTTTTGTCCATATTGAACATGATTTTTTTCATTAATATTCTTTTAACATGCATATTTTATTGGGCAGGTCACCGACTTTGGGCTTTCCAGACCAGAAATGATTAAACCTCGTCTGTCAAATGTCAGAGGAACTTTTGGATATCTTGATCCCGAGTATATCTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGTTTCGGTGTGCTACTGTTTGAGCTTATTACTGGCAGGAATCCACAGCAGGGTCTCATGGAATATGTAAAACTGGTAAGAACAGTGTCTTTCTGTTGCCTTCTATACATGCGGCCGCGAGCTGCTGCGCTTAAGTATATTTTGGCTTATCTAACAATATTCAACAGTATAGACTTTAATAACTATGAACTAACAGTGTGGAGAAGATTAATACAGATATCCAATCATATGTCACACTTGTAGATACACTCTTCACGGTGAATCAGGATGTAGCAAGATGATGTATGATCAGATATATGATGAACTAATCATGTGTGCAATATTTAGTTATTAAATTCATTGATAATTAGTATATATAACCTTTATATTATATATGTTTTGGATTCAATTTTTTTTTTTTTTTTTGTGGTTATGATTAGGCTGCCATGGAAAGTGAGGACAAGATTGCATGGGAAGAAATTGTGGATCCGCAACTGAATGGAAACTATGATGTACATAAGCTTAATGACATGGCTTCACTTGCACTCAAATGTGTCAATGGTGTCTCCAAAATTCGACCTTCAATGAGGAACATTGTTCAAGCATTATCTCAACTTTATAAGAAGCCTAAGAGAAATTCTAGCCGAGTAGCTCCTCCTGCGTTAAATGAAGTGTCTGTTGAAGTGATGCAGCCAGAAACTCGTGACTTTTCTATTGAGTGTTCAGAGGAGCTGCGCAGATTGCACAGCCGATAA

Protein sequence

>MS.gene40155.t1

MNSHEMSRTLLILAIGICIGFVIGAGLVFSILVFCRPGRKRVEVEKSGPLRTEAINVHGKGADSSVTSLSDSNATFESPRTSEWSNTPFWLEGLRRKNAVSVCGIPKYSYKDIEKATSNFTTIIGHGAFGPVYKAIMPTGEAVAVKVLGANSRQGEQEFLTEVLLLGRLHHKNLVGLVGYAAERGKHMLLYIYMSNGSLASHLYGENHEPLSWNLRLSIALDVARVMEYLHYSIDPPIVHRDIKSSNILLDKFMKAKVTDFGLSRPEMIKPRLSNVRGTFGYLDPEYISTRTFTKKSDVYSFGVLLFELITGRNPQQGLMEYVKLAAMESEDKIAWEEIVDPQLNGNYDVHKLNDMASLALKCVNGVSKIRPSMRNIVQALSQLYKKPKRNSSRVAPPALNEVSVEVMQPETRDFSIECSEELRRLHSR