Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40283.t1 | AES73877.1 | 89 | 326 | 25 | 4 | 1 | 323 | 1 | 318 | 1.80E-148 | 535.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40283.t1 | P69781 | 52.2 | 268 | 92 | 6 | 89 | 323 | 67 | 331 | 1.2e-63 | 245.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40283.t1 | G7J3H0 | 89.0 | 326 | 25 | 4 | 1 | 323 | 1 | 318 | 1.3e-148 | 535.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene40283.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40283.t1 | MTR_3g109760 | 92.638 | 326 | 13 | 4 | 1 | 323 | 1 | 318 | 0.0 | 546 |
| MS.gene40283.t1 | MTR_1g006650 | 53.143 | 350 | 119 | 10 | 6 | 323 | 8 | 344 | 1.81e-107 | 317 |
| MS.gene40283.t1 | MTR_8g013950 | 45.082 | 366 | 134 | 14 | 1 | 323 | 1 | 342 | 3.49e-80 | 247 |
| MS.gene40283.t1 | MTR_4g071590 | 36.824 | 296 | 144 | 11 | 1 | 281 | 13 | 280 | 2.33e-43 | 151 |
| MS.gene40283.t1 | MTR_4g471590 | 36.824 | 296 | 144 | 11 | 1 | 281 | 13 | 280 | 2.33e-43 | 151 |
| MS.gene40283.t1 | MTR_8g076340 | 39.362 | 282 | 128 | 11 | 19 | 282 | 32 | 288 | 5.22e-42 | 147 |
| MS.gene40283.t1 | MTR_3g117380 | 39.852 | 271 | 142 | 10 | 19 | 282 | 43 | 299 | 1.16e-39 | 142 |
| MS.gene40283.t1 | MTR_1g094930 | 37.597 | 258 | 97 | 8 | 83 | 276 | 49 | 306 | 2.02e-37 | 136 |
| MS.gene40283.t1 | MTR_6g032830 | 37.054 | 224 | 92 | 5 | 104 | 278 | 35 | 258 | 3.82e-36 | 131 |
| MS.gene40283.t1 | MTR_5g021340 | 40.708 | 226 | 96 | 7 | 90 | 282 | 150 | 370 | 6.08e-35 | 131 |
| MS.gene40283.t1 | MTR_7g085410 | 41.038 | 212 | 82 | 7 | 104 | 276 | 45 | 252 | 8.15e-35 | 127 |
| MS.gene40283.t1 | MTR_1g094930 | 57.009 | 107 | 44 | 2 | 171 | 276 | 106 | 211 | 1.67e-34 | 126 |
| MS.gene40283.t1 | MTR_1g046680 | 78.873 | 71 | 15 | 0 | 211 | 281 | 171 | 241 | 1.79e-33 | 124 |
| MS.gene40283.t1 | MTR_5g007600 | 53.211 | 109 | 51 | 0 | 173 | 281 | 220 | 328 | 4.93e-33 | 125 |
| MS.gene40283.t1 | MTR_5g007600 | 49.206 | 126 | 49 | 2 | 151 | 275 | 109 | 220 | 5.72e-30 | 116 |
| MS.gene40283.t1 | MTR_1g116010 | 73.529 | 68 | 18 | 0 | 209 | 276 | 161 | 228 | 1.28e-29 | 113 |
| MS.gene40283.t1 | MTR_2g094600 | 75.385 | 65 | 16 | 0 | 212 | 276 | 216 | 280 | 3.05e-29 | 114 |
| MS.gene40283.t1 | MTR_4g058910 | 62.963 | 81 | 30 | 0 | 212 | 292 | 314 | 394 | 3.66e-29 | 115 |
| MS.gene40283.t1 | MTR_7g446110 | 55.696 | 79 | 32 | 2 | 201 | 278 | 175 | 251 | 2.46e-22 | 94.4 |
| MS.gene40283.t1 | MTR_7g446070 | 34.783 | 184 | 102 | 6 | 91 | 272 | 25 | 192 | 3.30e-21 | 89.7 |
| MS.gene40283.t1 | MTR_7g445950 | 34.254 | 181 | 86 | 6 | 95 | 272 | 30 | 180 | 2.19e-20 | 87.4 |
| MS.gene40283.t1 | MTR_7g445980 | 66.071 | 56 | 18 | 1 | 216 | 270 | 37 | 92 | 3.29e-19 | 81.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40283.t1 | AT4G32890 | 49.367 | 316 | 115 | 10 | 30 | 323 | 16 | 308 | 3.77e-86 | 261 |
| MS.gene40283.t1 | AT5G25830 | 47.458 | 354 | 128 | 11 | 2 | 323 | 4 | 331 | 4.27e-86 | 262 |
| MS.gene40283.t1 | AT3G60530 | 48.039 | 204 | 74 | 5 | 89 | 292 | 63 | 234 | 1.64e-51 | 171 |
| MS.gene40283.t1 | AT2G45050 | 47.907 | 215 | 76 | 7 | 89 | 289 | 65 | 257 | 1.17e-48 | 164 |
| MS.gene40283.t1 | AT4G36240 | 39.300 | 257 | 111 | 8 | 32 | 279 | 11 | 231 | 2.74e-38 | 136 |
| MS.gene40283.t1 | AT5G66320 | 39.768 | 259 | 98 | 7 | 76 | 292 | 87 | 329 | 6.65e-38 | 138 |
| MS.gene40283.t1 | AT5G66320 | 39.768 | 259 | 98 | 7 | 76 | 292 | 87 | 329 | 6.65e-38 | 138 |
| MS.gene40283.t1 | AT3G24050 | 77.941 | 68 | 15 | 0 | 211 | 278 | 193 | 260 | 4.37e-33 | 123 |
| MS.gene40283.t1 | AT1G08010 | 67.073 | 82 | 21 | 1 | 209 | 284 | 217 | 298 | 4.40e-32 | 121 |
| MS.gene40283.t1 | AT1G08010 | 67.073 | 82 | 21 | 1 | 209 | 284 | 217 | 298 | 4.40e-32 | 121 |
| MS.gene40283.t1 | AT1G08010 | 67.073 | 82 | 21 | 1 | 209 | 284 | 217 | 298 | 4.40e-32 | 121 |
| MS.gene40283.t1 | AT4G34680 | 43.478 | 184 | 73 | 7 | 99 | 281 | 96 | 249 | 8.07e-32 | 120 |
| MS.gene40283.t1 | AT4G34680 | 43.478 | 184 | 73 | 7 | 99 | 281 | 96 | 249 | 8.07e-32 | 120 |
| MS.gene40283.t1 | AT3G54810 | 75.000 | 68 | 17 | 0 | 212 | 279 | 229 | 296 | 9.18e-32 | 121 |
| MS.gene40283.t1 | AT3G54810 | 75.000 | 68 | 17 | 0 | 212 | 279 | 229 | 296 | 9.18e-32 | 121 |
| MS.gene40283.t1 | AT3G51080 | 73.913 | 69 | 18 | 0 | 212 | 280 | 221 | 289 | 4.12e-30 | 116 |
| MS.gene40283.t1 | AT1G08000 | 60.227 | 88 | 30 | 1 | 209 | 291 | 215 | 302 | 4.27e-30 | 116 |
| MS.gene40283.t1 | AT1G08000 | 60.227 | 88 | 30 | 1 | 209 | 291 | 215 | 302 | 4.27e-30 | 116 |
| MS.gene40283.t1 | AT3G45170 | 62.319 | 69 | 26 | 0 | 212 | 280 | 115 | 183 | 5.45e-26 | 102 |
| MS.gene40283.t1 | AT2G28340 | 68.254 | 63 | 20 | 0 | 214 | 276 | 193 | 255 | 1.20e-24 | 101 |
Find 91 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATGATTCCTCAGCAAATT+TGG | 0.139979 | 3.3:+90925414 | None:intergenic |
| CACGCATTGCATAGTGTCTT+TGG | 0.290696 | 3.3:+90925043 | None:intergenic |
| ACAGTTGATATCTGGATTAA+AGG | 0.306992 | 3.3:-90925368 | MS.gene40283:CDS |
| CATAAGCTACAGTTGATATC+TGG | 0.309428 | 3.3:-90925376 | MS.gene40283:CDS |
| AAGGGCCGTCGGCAGAATTC+TGG | 0.309787 | 3.3:+90926980 | None:intergenic |
| CAGTGGCGCACCGGGCCATT+AGG | 0.332794 | 3.3:-90925067 | MS.gene40283:CDS |
| CATAGTGTCTTTGGACCTAA+TGG | 0.339675 | 3.3:+90925052 | None:intergenic |
| CACGTGTGCCTCCATGCAAC+TGG | 0.370780 | 3.3:-90925252 | MS.gene40283:CDS |
| GGGCCCTCATCATCTCCTTC+TGG | 0.374473 | 3.3:+90924906 | None:intergenic |
| ATTGTGGACAGAAGCTGGTT+TGG | 0.397002 | 3.3:+90927202 | None:intergenic |
| TACATGAGGTGCGTGAAATC+AGG | 0.407205 | 3.3:+90924788 | None:intergenic |
| TTGCAACAATTGGTGTTGTT+GGG | 0.408578 | 3.3:+90924886 | None:intergenic |
| GTTGCAACAATTGGTGTTGT+TGG | 0.409369 | 3.3:+90924885 | None:intergenic |
| GACACTTGAGGGTGTATTGT+TGG | 0.425894 | 3.3:+90925304 | None:intergenic |
| TGCTTAGTCAACACAAATGT+TGG | 0.431309 | 3.3:+90924965 | None:intergenic |
| CATCACAGCATTATGTTTGA+AGG | 0.433831 | 3.3:-90924854 | MS.gene40283:CDS |
| TCTCTTTGATTTCTCTAATG+AGG | 0.434233 | 3.3:-90927115 | MS.gene40283:CDS |
| CGGCAAAAGCCCGTAGTAAA+CGG | 0.443499 | 3.3:-90925276 | MS.gene40283:CDS |
| TTCGAAAGTGGGGTCTTCAA+TGG | 0.445894 | 3.3:+90927086 | None:intergenic |
| TTGCACCTTTCGATGTGAGT+TGG | 0.456005 | 3.3:+90924940 | None:intergenic |
| CTCCGGCGAACTCTCCGTTC+CGG | 0.462198 | 3.3:-90926956 | MS.gene40283:intron |
| ACGGAGAGTTCGCCGGAGAA+AGG | 0.464710 | 3.3:+90926961 | None:intergenic |
| AGATGTGGTGGTGGTGGTCA+TGG | 0.465812 | 3.3:+90925201 | None:intergenic |
| GTTTGTGGTGGAATTGTTGT+CGG | 0.468374 | 3.3:+90927179 | None:intergenic |
| GTGGTGGTGGTGGTCATGGT+TGG | 0.470501 | 3.3:+90925205 | None:intergenic |
| TTGCCGGGACAGACACTTGA+GGG | 0.471708 | 3.3:+90925293 | None:intergenic |
| ACAAATGTTGGGCTTGCTGC+AGG | 0.475199 | 3.3:+90924977 | None:intergenic |
| ATGATCTTGCGCAGCTAGAA+TGG | 0.476849 | 3.3:-90925441 | MS.gene40283:CDS |
| TCATCATCTCCTTCTGGCGT+CGG | 0.486176 | 3.3:+90924912 | None:intergenic |
| CGGAGAGTTCGCCGGAGAAA+GGG | 0.487872 | 3.3:+90926962 | None:intergenic |
| GCTTAGTCAACACAAATGTT+GGG | 0.498811 | 3.3:+90924966 | None:intergenic |
| AGCAGTGTTTACATTGTTTG+TGG | 0.499828 | 3.3:+90927164 | None:intergenic |
| TCTGCCGACGGCCCTTTCTC+CGG | 0.501462 | 3.3:-90926973 | MS.gene40283:CDS |
| GTGGGATTGGTTTCAAGAGG+AGG | 0.506926 | 3.3:+90927033 | None:intergenic |
| GTGGAATTGTTGTCGGATTG+TGG | 0.509048 | 3.3:+90927186 | None:intergenic |
| AGGAGGAGATTCTTCGAAAG+TGG | 0.514544 | 3.3:+90927074 | None:intergenic |
| GATGTTGTAGTTGCAACAAT+TGG | 0.517809 | 3.3:+90924876 | None:intergenic |
| ACACTTGAGGGTGTATTGTT+GGG | 0.518688 | 3.3:+90925305 | None:intergenic |
| AGACTCCACAGTGGCGCACC+GGG | 0.518894 | 3.3:-90925075 | MS.gene40283:CDS |
| AAGACTCCACAGTGGCGCAC+CGG | 0.525177 | 3.3:-90925076 | MS.gene40283:CDS |
| GAATCATTAGAGTTGGTAGG+AGG | 0.531077 | 3.3:+90927057 | None:intergenic |
| GCAAGAGCTCCGACGCCAGA+AGG | 0.533988 | 3.3:-90924921 | MS.gene40283:CDS |
| GTCGGATTGTGGACAGAAGC+TGG | 0.535564 | 3.3:+90927197 | None:intergenic |
| GGAGAATCATTAGAGTTGGT+AGG | 0.541668 | 3.3:+90927054 | None:intergenic |
| ATATCAACTGTAGCTTATGA+AGG | 0.545098 | 3.3:+90925380 | None:intergenic |
| AGGAGGAGAATCATTAGAGT+TGG | 0.548174 | 3.3:+90927050 | None:intergenic |
| GTCGACTCGTACCTGAGTAT+AGG | 0.562857 | 3.3:-90925000 | MS.gene40283:CDS |
| CACACGTGACCGTTTACTAC+GGG | 0.563431 | 3.3:+90925267 | None:intergenic |
| AATGGCCCGGTGCGCCACTG+TGG | 0.564107 | 3.3:+90925070 | None:intergenic |
| GGAGGAGATTCTTCGAAAGT+GGG | 0.565310 | 3.3:+90927075 | None:intergenic |
| TGTGGAGTCAGATACAAGTC+AGG | 0.567755 | 3.3:-90925022 | MS.gene40283:CDS |
| TACCGGAACGGAGAGTTCGC+CGG | 0.569597 | 3.3:+90926954 | None:intergenic |
| GACGCCAGAAGGAGATGATG+AGG | 0.570929 | 3.3:-90924910 | MS.gene40283:CDS |
| GAAGTGGGATTGGTTTCAAG+AGG | 0.577002 | 3.3:+90927030 | None:intergenic |
| AGAGATCTTCAACGATGAAG+TGG | 0.579783 | 3.3:+90927133 | None:intergenic |
| GTGAGAAGATGTGGTGGTGG+TGG | 0.580310 | 3.3:+90925195 | None:intergenic |
| GCACACGTGACCGTTTACTA+CGG | 0.581455 | 3.3:+90925266 | None:intergenic |
| AGGCGCGAAGTCCAGTTGCA+TGG | 0.582876 | 3.3:+90925241 | None:intergenic |
| TGTCTTTGGACCTAATGGCC+CGG | 0.587867 | 3.3:+90925057 | None:intergenic |
| GACCTCGGTGATGGAGGAGA+GGG | 0.591558 | 3.3:-90925127 | MS.gene40283:CDS |
| TTTGCCGGGACAGACACTTG+AGG | 0.592935 | 3.3:+90925292 | None:intergenic |
| ACACCCTCAAGTGTCTGTCC+CGG | 0.593472 | 3.3:-90925296 | MS.gene40283:CDS |
| AAAAGAGACCTCGGTGATGG+AGG | 0.595010 | 3.3:-90925133 | MS.gene40283:CDS |
| AATCAAGTAATCATCACCGT+TGG | 0.595692 | 3.3:+90924826 | None:intergenic |
| AGAGTGAGAAGATGTGGTGG+TGG | 0.596239 | 3.3:+90925192 | None:intergenic |
| AAGTAATCATCACCGTTGGA+TGG | 0.601160 | 3.3:+90924830 | None:intergenic |
| TATAATGGCACGTACCGGAA+CGG | 0.606350 | 3.3:+90926942 | None:intergenic |
| ACGCCAGAAGGAGATGATGA+GGG | 0.609091 | 3.3:-90924909 | MS.gene40283:CDS |
| AGACCTCGGTGATGGAGGAG+AGG | 0.609530 | 3.3:-90925128 | MS.gene40283:CDS |
| TTCGCCGGAGAAAGGGCCGT+CGG | 0.611125 | 3.3:+90926969 | None:intergenic |
| GCACTCCAACTCACATCGAA+AGG | 0.612333 | 3.3:-90924945 | MS.gene40283:CDS |
| AGTGTTTACATTGTTTGTGG+TGG | 0.618078 | 3.3:+90927167 | None:intergenic |
| CTTGCTGCAGGCCTATACTC+AGG | 0.624212 | 3.3:+90924989 | None:intergenic |
| ATCTTCAACGATGAAGTGGT+CGG | 0.624703 | 3.3:+90927137 | None:intergenic |
| ATCTTCTCACTCTGACACCA+TGG | 0.629511 | 3.3:-90925182 | MS.gene40283:CDS |
| TCGTGCCAGAATTCTGCCGA+CGG | 0.642132 | 3.3:-90926985 | MS.gene40283:CDS |
| GTCAGAGTGAGAAGATGTGG+TGG | 0.644152 | 3.3:+90925189 | None:intergenic |
| ATGTTTGAAGGACCATCCAA+CGG | 0.648434 | 3.3:-90924842 | MS.gene40283:CDS |
| CCAAAGCACCGTACTACATG+AGG | 0.651273 | 3.3:+90924774 | None:intergenic |
| CCACTGTGGAGTCTTATCAG+TGG | 0.652363 | 3.3:+90925084 | None:intergenic |
| ATGGATGTCCAAATTTGCTG+AGG | 0.653086 | 3.3:-90925422 | MS.gene40283:CDS |
| TGGTTGGAGAGAGAACTAGA+AGG | 0.657111 | 3.3:+90925221 | None:intergenic |
| CGCGAAGTCCAGTTGCATGG+AGG | 0.662375 | 3.3:+90925244 | None:intergenic |
| TACTTGATTCATCAACACGT+GGG | 0.667702 | 3.3:-90924812 | MS.gene40283:CDS |
| GGTGTCAGAGTGAGAAGATG+TGG | 0.671117 | 3.3:+90925186 | None:intergenic |
| AAGACACTATGCAATGCGTG+TGG | 0.676419 | 3.3:-90925040 | MS.gene40283:CDS |
| TTACTTGATTCATCAACACG+TGG | 0.680358 | 3.3:-90924813 | MS.gene40283:CDS |
| GAGGAGATTCTTCGAAAGTG+GGG | 0.692052 | 3.3:+90927076 | None:intergenic |
| GACCCTCTCCTCCATCACCG+AGG | 0.717630 | 3.3:+90925125 | None:intergenic |
| ATTCTGGCACGAATTGACGT+CGG | 0.752925 | 3.3:+90926996 | None:intergenic |
| CCACTGATAAGACTCCACAG+TGG | 0.837860 | 3.3:-90925084 | MS.gene40283:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTTAAAAAAAAAATATAG+GGG | + | chr3.3:90926025-90926044 | None:intergenic | 10.0% |
| !! | TATTATTTATATACAACAAT+TGG | - | chr3.3:90925163-90925182 | MS.gene40283:CDS | 10.0% |
| !! | AGTTAAAAAAAAAATATAGG+GGG | + | chr3.3:90926024-90926043 | None:intergenic | 15.0% |
| !! | ATATAAAGTAAGAATTCTAA+TGG | - | chr3.3:90926331-90926350 | MS.gene40283:intron | 15.0% |
| !! | ATATTTGTAATAAAAGCTAA+GGG | + | chr3.3:90926074-90926093 | None:intergenic | 15.0% |
| !! | TATATTTGTAATAAAAGCTA+AGG | + | chr3.3:90926075-90926094 | None:intergenic | 15.0% |
| !!! | TATTATTTTTGTTTAGAGAA+GGG | + | chr3.3:90926113-90926132 | None:intergenic | 15.0% |
| !!! | TCATTTTTAAGATACTATAT+CGG | + | chr3.3:90926304-90926323 | None:intergenic | 15.0% |
| !!! | TCTTAAGATATACTTTTTTT+AGG | + | chr3.3:90926264-90926283 | None:intergenic | 15.0% |
| !!! | TTATTATTTTTGTTTAGAGA+AGG | + | chr3.3:90926114-90926133 | None:intergenic | 15.0% |
| !! | AGAAAATACATAACCTAATA+TGG | - | chr3.3:90926455-90926474 | MS.gene40283:intron | 20.0% |
| !! | TCTTAAGACAACAATTAAAA+AGG | - | chr3.3:90926276-90926295 | MS.gene40283:intron | 20.0% |
| !! | TTTCATAAGTATGACAATTA+TGG | + | chr3.3:90925431-90925450 | None:intergenic | 20.0% |
| !!! | ATAAAGAGAGAGTATTATTT+AGG | + | chr3.3:90925240-90925259 | None:intergenic | 20.0% |
| !!! | ATTAGGTTATGTATTTTCTA+AGG | + | chr3.3:90926454-90926473 | None:intergenic | 20.0% |
| !!! | TTCTTTTTATACTCCATATT+AGG | + | chr3.3:90926471-90926490 | None:intergenic | 20.0% |
| ! | AATGGAACAGATAAAATTGT+AGG | + | chr3.3:90925203-90925222 | None:intergenic | 25.0% |
| ! | ATAAGAAAATGTGAGGTATA+TGG | - | chr3.3:90925733-90925752 | MS.gene40283:intron | 25.0% |
| ! | CAAAAGTAGAAAAAATGTCT+TGG | + | chr3.3:90925591-90925610 | None:intergenic | 25.0% |
| ! | TAAGAAAATGTGAGGTATAT+GGG | - | chr3.3:90925734-90925753 | MS.gene40283:intron | 25.0% |
| !! | GAGTGAATTTTGAATTTCAA+GGG | - | chr3.3:90925764-90925783 | MS.gene40283:intron | 25.0% |
| !!! | ATAGTCTTTTATTTAGTCGT+GGG | - | chr3.3:90925708-90925727 | MS.gene40283:intron | 25.0% |
| !!! | CAAGACATTTTTTCTACTTT+TGG | - | chr3.3:90925589-90925608 | MS.gene40283:intron | 25.0% |
| !!! | GTTTTTGATTCAACGTTATT+TGG | + | chr3.3:90926669-90926688 | None:intergenic | 25.0% |
| !!! | TATAGTCTTTTATTTAGTCG+TGG | - | chr3.3:90925707-90925726 | MS.gene40283:intron | 25.0% |
| !!! | TTTTTAAGGAGAATGTTAAC+CGG | - | chr3.3:90925472-90925491 | MS.gene40283:intron | 25.0% |
| AAAATTAAAAATAGAGCCCC+GGG | + | chr3.3:90925630-90925649 | None:intergenic | 30.0% | |
| AAATGATTCCTCAGCAAATT+TGG | + | chr3.3:90926598-90926617 | None:intergenic | 30.0% | |
| ATATATATAATGGCACGTAC+CGG | + | chr3.3:90925075-90925094 | None:intergenic | 30.0% | |
| ATATCAACTGTAGCTTATGA+AGG | + | chr3.3:90926632-90926651 | None:intergenic | 30.0% | |
| ATCTGTTCCATTGAATTTGA+GGG | - | chr3.3:90925211-90925230 | MS.gene40283:CDS | 30.0% | |
| CAAAATTAAAAATAGAGCCC+CGG | + | chr3.3:90925631-90925650 | None:intergenic | 30.0% | |
| CACACATATTAAAGAAAAGC+AGG | + | chr3.3:90925353-90925372 | None:intergenic | 30.0% | |
| TATCTGTTCCATTGAATTTG+AGG | - | chr3.3:90925210-90925229 | MS.gene40283:CDS | 30.0% | |
| ! | ACAGTTGATATCTGGATTAA+AGG | - | chr3.3:90926641-90926660 | MS.gene40283:intron | 30.0% |
| ! | GGAGTGAATTTTGAATTTCA+AGG | - | chr3.3:90925763-90925782 | MS.gene40283:intron | 30.0% |
| ! | TCTCTTTGATTTCTCTAATG+AGG | - | chr3.3:90924894-90924913 | MS.gene40283:CDS | 30.0% |
| AAATTAAAAATAGAGCCCCG+GGG | + | chr3.3:90925629-90925648 | None:intergenic | 35.0% | |
| AATCAAGTAATCATCACCGT+TGG | + | chr3.3:90927186-90927205 | None:intergenic | 35.0% | |
| AGCAGTGTTTACATTGTTTG+TGG | + | chr3.3:90924848-90924867 | None:intergenic | 35.0% | |
| AGTGTTTACATTGTTTGTGG+TGG | + | chr3.3:90924845-90924864 | None:intergenic | 35.0% | |
| ATTGACGTCGGTGAAAAAAT+TGG | + | chr3.3:90925004-90925023 | None:intergenic | 35.0% | |
| CATCACAGCATTATGTTTGA+AGG | - | chr3.3:90927155-90927174 | MS.gene40283:CDS | 35.0% | |
| GAAAAAATTGGAAGTGGGAT+TGG | + | chr3.3:90924992-90925011 | None:intergenic | 35.0% | |
| GATGTTGTAGTTGCAACAAT+TGG | + | chr3.3:90927136-90927155 | None:intergenic | 35.0% | |
| GCTTAGTCAACACAAATGTT+GGG | + | chr3.3:90927046-90927065 | None:intergenic | 35.0% | |
| GTGGGAAATAAGAAAATGTG+AGG | - | chr3.3:90925726-90925745 | MS.gene40283:intron | 35.0% | |
| TACTTGATTCATCAACACGT+GGG | - | chr3.3:90927197-90927216 | MS.gene40283:CDS | 35.0% | |
| TAGGTTTCCCTCAAATTCAA+TGG | + | chr3.3:90925221-90925240 | None:intergenic | 35.0% | |
| TCGGTGAAAAAATTGGAAGT+GGG | + | chr3.3:90924997-90925016 | None:intergenic | 35.0% | |
| TGCTTAGTCAACACAAATGT+TGG | + | chr3.3:90927047-90927066 | None:intergenic | 35.0% | |
| TTACTTGATTCATCAACACG+TGG | - | chr3.3:90927196-90927215 | MS.gene40283:CDS | 35.0% | |
| TTGACTCAACATGTGTAGTT+AGG | - | chr3.3:90925129-90925148 | MS.gene40283:CDS | 35.0% | |
| ! | CATAAGCTACAGTTGATATC+TGG | - | chr3.3:90926633-90926652 | MS.gene40283:intron | 35.0% |
| !! | TTGCAACAATTGGTGTTGTT+GGG | + | chr3.3:90927126-90927145 | None:intergenic | 35.0% |
| !!! | TGAGGAATCATTTTCAAGTG+AGG | - | chr3.3:90926605-90926624 | MS.gene40283:intron | 35.0% |
| AAGTAATCATCACCGTTGGA+TGG | + | chr3.3:90927182-90927201 | None:intergenic | 40.0% | |
| AGAGATCTTCAACGATGAAG+TGG | + | chr3.3:90924879-90924898 | None:intergenic | 40.0% | |
| AGGAGGAGAATCATTAGAGT+TGG | + | chr3.3:90924962-90924981 | None:intergenic | 40.0% | |
| ATATCTTATGTTCGCCGTGT+AGG | + | chr3.3:90926413-90926432 | None:intergenic | 40.0% | |
| ATCTTCAACGATGAAGTGGT+CGG | + | chr3.3:90924875-90924894 | None:intergenic | 40.0% | |
| ATGTGAGGTATATGGGATAG+AGG | - | chr3.3:90925741-90925760 | MS.gene40283:intron | 40.0% | |
| ATGTTTGAAGGACCATCCAA+CGG | - | chr3.3:90927167-90927186 | MS.gene40283:CDS | 40.0% | |
| CATAGTGTCTTTGGACCTAA+TGG | + | chr3.3:90926960-90926979 | None:intergenic | 40.0% | |
| CCTTATGATACACACCTACA+CGG | - | chr3.3:90926396-90926415 | MS.gene40283:intron | 40.0% | |
| GTCGGTGAAAAAATTGGAAG+TGG | + | chr3.3:90924998-90925017 | None:intergenic | 40.0% | |
| TCTCCAAGAAAAAGAGACCT+CGG | - | chr3.3:90926867-90926886 | MS.gene40283:intron | 40.0% | |
| TGTGAGGTATATGGGATAGA+GGG | - | chr3.3:90925742-90925761 | MS.gene40283:intron | 40.0% | |
| ! | ACACTTGAGGGTGTATTGTT+GGG | + | chr3.3:90926707-90926726 | None:intergenic | 40.0% |
| ! | AGGTCTCTTTTTCTTGGAGA+GGG | + | chr3.3:90926867-90926886 | None:intergenic | 40.0% |
| ! | GGAGAATCATTAGAGTTGGT+AGG | + | chr3.3:90924958-90924977 | None:intergenic | 40.0% |
| ! | GTTTGTGGTGGAATTGTTGT+CGG | + | chr3.3:90924833-90924852 | None:intergenic | 40.0% |
| !! | ATGGATGTCCAAATTTGCTG+AGG | - | chr3.3:90926587-90926606 | MS.gene40283:intron | 40.0% |
| !! | GAATCATTAGAGTTGGTAGG+AGG | + | chr3.3:90924955-90924974 | None:intergenic | 40.0% |
| !! | GTTGCAACAATTGGTGTTGT+TGG | + | chr3.3:90927127-90927146 | None:intergenic | 40.0% |
| !!! | TTTCTTGGAGAGGGCTTTTT+TGG | + | chr3.3:90926858-90926877 | None:intergenic | 40.0% |
| AAGACACTATGCAATGCGTG+TGG | - | chr3.3:90926969-90926988 | MS.gene40283:CDS | 45.0% | |
| AGAAAAAGAGACCTCGGTGA+TGG | - | chr3.3:90926873-90926892 | MS.gene40283:intron | 45.0% | |
| AGGAGGAGATTCTTCGAAAG+TGG | + | chr3.3:90924938-90924957 | None:intergenic | 45.0% | |
| ATCTTCTCACTCTGACACCA+TGG | - | chr3.3:90926827-90926846 | MS.gene40283:intron | 45.0% | |
| ATGATCTTGCGCAGCTAGAA+TGG | - | chr3.3:90926568-90926587 | MS.gene40283:intron | 45.0% | |
| ATTCTGGCACGAATTGACGT+CGG | + | chr3.3:90925016-90925035 | None:intergenic | 45.0% | |
| ATTGTGGACAGAAGCTGGTT+TGG | + | chr3.3:90924810-90924829 | None:intergenic | 45.0% | |
| CACGCATTGCATAGTGTCTT+TGG | + | chr3.3:90926969-90926988 | None:intergenic | 45.0% | |
| CCGTGTAGGTGTGTATCATA+AGG | + | chr3.3:90926399-90926418 | None:intergenic | 45.0% | |
| GAGGAGATTCTTCGAAAGTG+GGG | + | chr3.3:90924936-90924955 | None:intergenic | 45.0% | |
| GGAGGAGATTCTTCGAAAGT+GGG | + | chr3.3:90924937-90924956 | None:intergenic | 45.0% | |
| GTGGAATTGTTGTCGGATTG+TGG | + | chr3.3:90924826-90924845 | None:intergenic | 45.0% | |
| TACATGAGGTGCGTGAAATC+AGG | + | chr3.3:90927224-90927243 | None:intergenic | 45.0% | |
| TATAATGGCACGTACCGGAA+CGG | + | chr3.3:90925070-90925089 | None:intergenic | 45.0% | |
| TGGATTCTTAACAAGTGCCC+CGG | - | chr3.3:90925609-90925628 | MS.gene40283:intron | 45.0% | |
| TGGTTGGAGAGAGAACTAGA+AGG | + | chr3.3:90926791-90926810 | None:intergenic | 45.0% | |
| TGTGGAGTCAGATACAAGTC+AGG | - | chr3.3:90926987-90927006 | MS.gene40283:CDS | 45.0% | |
| TTCGAAAGTGGGGTCTTCAA+TGG | + | chr3.3:90924926-90924945 | None:intergenic | 45.0% | |
| TTGCACCTTTCGATGTGAGT+TGG | + | chr3.3:90927072-90927091 | None:intergenic | 45.0% | |
| ! | GACACTTGAGGGTGTATTGT+TGG | + | chr3.3:90926708-90926727 | None:intergenic | 45.0% |
| ! | GAGGTCTCTTTTTCTTGGAG+AGG | + | chr3.3:90926868-90926887 | None:intergenic | 45.0% |
| ! | TCACCGAGGTCTCTTTTTCT+TGG | + | chr3.3:90926873-90926892 | None:intergenic | 45.0% |
| !! | GAAGTGGGATTGGTTTCAAG+AGG | + | chr3.3:90924982-90925001 | None:intergenic | 45.0% |
| !! | AATAATTACTATATATATAA+TGG | + | chr3.3:90925085-90925104 | None:intergenic | 5.0% |
| !! | ATAGTTAAAAAAAAAATATA+GGG | + | chr3.3:90926026-90926045 | None:intergenic | 5.0% |
| !! | TATAAATATATGATAAAAAA+AGG | + | chr3.3:90925691-90925710 | None:intergenic | 5.0% |
| !! | TATAGTTAAAAAAAAAATAT+AGG | + | chr3.3:90926027-90926046 | None:intergenic | 5.0% |
| !!! | ATAAATTTTATTATATTTGA+TGG | + | chr3.3:90926198-90926217 | None:intergenic | 5.0% |
| !!! | TAAAATGAATATTATTTTTA+AGG | - | chr3.3:90925458-90925477 | MS.gene40283:intron | 5.0% |
| ACGCCAGAAGGAGATGATGA+GGG | - | chr3.3:90927100-90927119 | MS.gene40283:CDS | 50.0% | |
| AGAGTGAGAAGATGTGGTGG+TGG | + | chr3.3:90926820-90926839 | None:intergenic | 50.0% | |
| CACACGTGACCGTTTACTAC+GGG | + | chr3.3:90926745-90926764 | None:intergenic | 50.0% | |
| CCACTGATAAGACTCCACAG+TGG | - | chr3.3:90926925-90926944 | MS.gene40283:intron | 50.0% | |
| CGGCAAAAGCCCGTAGTAAA+CGG | - | chr3.3:90926733-90926752 | MS.gene40283:intron | 50.0% | |
| GATTCTTAACAAGTGCCCCG+GGG | - | chr3.3:90925611-90925630 | MS.gene40283:intron | 50.0% | |
| GCACACGTGACCGTTTACTA+CGG | + | chr3.3:90926746-90926765 | None:intergenic | 50.0% | |
| GCACTCCAACTCACATCGAA+AGG | - | chr3.3:90927064-90927083 | MS.gene40283:CDS | 50.0% | |
| GGATTCTTAACAAGTGCCCC+GGG | - | chr3.3:90925610-90925629 | MS.gene40283:intron | 50.0% | |
| GGTGTCAGAGTGAGAAGATG+TGG | + | chr3.3:90926826-90926845 | None:intergenic | 50.0% | |
| GTCAGAGTGAGAAGATGTGG+TGG | + | chr3.3:90926823-90926842 | None:intergenic | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | + | chr3.3:90925502-90925521 | None:intergenic | 50.0% | |
| TCATCATCTCCTTCTGGCGT+CGG | + | chr3.3:90927100-90927119 | None:intergenic | 50.0% | |
| TGTCTTTGGACCTAATGGCC+CGG | + | chr3.3:90926955-90926974 | None:intergenic | 50.0% | |
| ! | AAAAGAGACCTCGGTGATGG+AGG | - | chr3.3:90926876-90926895 | MS.gene40283:intron | 50.0% |
| ! | CCACTGTGGAGTCTTATCAG+TGG | + | chr3.3:90926928-90926947 | None:intergenic | 50.0% |
| ! | CGTTTACTACGGGCTTTTGC+CGG | + | chr3.3:90926735-90926754 | None:intergenic | 50.0% |
| ! | GTTTACTACGGGCTTTTGCC+GGG | + | chr3.3:90926734-90926753 | None:intergenic | 50.0% |
| !! | ACAAATGTTGGGCTTGCTGC+AGG | + | chr3.3:90927035-90927054 | None:intergenic | 50.0% |
| !! | GTCGACTCGTACCTGAGTAT+AGG | - | chr3.3:90927009-90927028 | MS.gene40283:CDS | 50.0% |
| !! | GTGGGATTGGTTTCAAGAGG+AGG | + | chr3.3:90924979-90924998 | None:intergenic | 50.0% |
| !!! | CTTGGAGAGGGCTTTTTTGG+TGG | + | chr3.3:90926855-90926874 | None:intergenic | 50.0% |
| ACACCCTCAAGTGTCTGTCC+CGG | - | chr3.3:90926713-90926732 | MS.gene40283:intron | 55.0% | |
| AGAATGTTAACCGGTGCCCC+GGG | - | chr3.3:90925481-90925500 | MS.gene40283:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | + | chr3.3:90925501-90925520 | None:intergenic | 55.0% | |
| CTTGCTGCAGGCCTATACTC+AGG | + | chr3.3:90927023-90927042 | None:intergenic | 55.0% | |
| GACGCCAGAAGGAGATGATG+AGG | - | chr3.3:90927099-90927118 | MS.gene40283:CDS | 55.0% | |
| GAGAATGTTAACCGGTGCCC+CGG | - | chr3.3:90925480-90925499 | MS.gene40283:intron | 55.0% | |
| GTCGGATTGTGGACAGAAGC+TGG | + | chr3.3:90924815-90924834 | None:intergenic | 55.0% | |
| TCGTGCCAGAATTCTGCCGA+CGG | - | chr3.3:90925024-90925043 | MS.gene40283:CDS | 55.0% | |
| TTGCCGGGACAGACACTTGA+GGG | + | chr3.3:90926719-90926738 | None:intergenic | 55.0% | |
| TTTGCCGGGACAGACACTTG+AGG | + | chr3.3:90926720-90926739 | None:intergenic | 55.0% | |
| !! | AGATGTGGTGGTGGTGGTCA+TGG | + | chr3.3:90926811-90926830 | None:intergenic | 55.0% |
| !! | GTGAGAAGATGTGGTGGTGG+TGG | + | chr3.3:90926817-90926836 | None:intergenic | 55.0% |
| !!! | GGGCTTTTTTGGTGGAGCCA+TGG | + | chr3.3:90926847-90926866 | None:intergenic | 55.0% |
| AAGACTCCACAGTGGCGCAC+CGG | - | chr3.3:90926933-90926952 | MS.gene40283:intron | 60.0% | |
| AAGGGCCGTCGGCAGAATTC+TGG | + | chr3.3:90925032-90925051 | None:intergenic | 60.0% | |
| ACGGAGAGTTCGCCGGAGAA+AGG | + | chr3.3:90925051-90925070 | None:intergenic | 60.0% | |
| AGGCGCGAAGTCCAGTTGCA+TGG | + | chr3.3:90926771-90926790 | None:intergenic | 60.0% | |
| CACGTGTGCCTCCATGCAAC+TGG | - | chr3.3:90926757-90926776 | MS.gene40283:intron | 60.0% | |
| CGCGAAGTCCAGTTGCATGG+AGG | + | chr3.3:90926768-90926787 | None:intergenic | 60.0% | |
| CGGAGAGTTCGCCGGAGAAA+GGG | + | chr3.3:90925050-90925069 | None:intergenic | 60.0% | |
| GAATGTTAACCGGTGCCCCG+GGG | - | chr3.3:90925482-90925501 | MS.gene40283:intron | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | + | chr3.3:90925500-90925519 | None:intergenic | 60.0% | |
| GGGCCCTCATCATCTCCTTC+TGG | + | chr3.3:90927106-90927125 | None:intergenic | 60.0% | |
| TACCGGAACGGAGAGTTCGC+CGG | + | chr3.3:90925058-90925077 | None:intergenic | 60.0% | |
| !! | AGACCTCGGTGATGGAGGAG+AGG | - | chr3.3:90926881-90926900 | MS.gene40283:intron | 60.0% |
| !! | GACCTCGGTGATGGAGGAGA+GGG | - | chr3.3:90926882-90926901 | MS.gene40283:intron | 60.0% |
| !! | GTGGTGGTGGTGGTCATGGT+TGG | + | chr3.3:90926807-90926826 | None:intergenic | 60.0% |
| AGACTCCACAGTGGCGCACC+GGG | - | chr3.3:90926934-90926953 | MS.gene40283:intron | 65.0% | |
| CTCCGGCGAACTCTCCGTTC+CGG | - | chr3.3:90925053-90925072 | MS.gene40283:CDS | 65.0% | |
| GACCCTCTCCTCCATCACCG+AGG | + | chr3.3:90926887-90926906 | None:intergenic | 65.0% | |
| GCAAGAGCTCCGACGCCAGA+AGG | - | chr3.3:90927088-90927107 | MS.gene40283:CDS | 65.0% | |
| TAACCAATGCCCCGGGGCAC+CGG | + | chr3.3:90925494-90925513 | None:intergenic | 65.0% | |
| TCTGCCGACGGCCCTTTCTC+CGG | - | chr3.3:90925036-90925055 | MS.gene40283:CDS | 65.0% | |
| TTCGCCGGAGAAAGGGCCGT+CGG | + | chr3.3:90925043-90925062 | None:intergenic | 65.0% | |
| AATGGCCCGGTGCGCCACTG+TGG | + | chr3.3:90926942-90926961 | None:intergenic | 70.0% | |
| CAGTGGCGCACCGGGCCATT+AGG | - | chr3.3:90926942-90926961 | MS.gene40283:intron | 70.0% | |
| TAACCGGTGCCCCGGGGCAT+TGG | - | chr3.3:90925488-90925507 | MS.gene40283:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 90924787 | 90927244 | 90924787 | ID=MS.gene40283 |
| chr3.3 | mRNA | 90924787 | 90927244 | 90924787 | ID=MS.gene40283.t1;Parent=MS.gene40283 |
| chr3.3 | exon | 90926957 | 90927244 | 90926957 | ID=MS.gene40283.t1.exon1;Parent=MS.gene40283.t1 |
| chr3.3 | CDS | 90926957 | 90927244 | 90926957 | ID=cds.MS.gene40283.t1;Parent=MS.gene40283.t1 |
| chr3.3 | exon | 90924787 | 90925470 | 90924787 | ID=MS.gene40283.t1.exon2;Parent=MS.gene40283.t1 |
| chr3.3 | CDS | 90924787 | 90925470 | 90924787 | ID=cds.MS.gene40283.t1;Parent=MS.gene40283.t1 |
| Gene Sequence |
| Protein sequence |
