AlfalfaGEDB | MS.gene40283

M. sativa cultivar XinJiangDaYe / MS.gene40283

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0045893 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0110165 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40283.t1	AES73877.1	89	326	25	4	1	323	1	318	1.80E-148	535.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40283.t1	P69781	52.2	268	92	6	89	323	67	331	1.2e-63	245.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40283.t1	G7J3H0	89.0	326	25	4	1	323	1	318	1.3e-148	535.4

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene40283.t1	TF	C2C2-GATA

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40283.t1	MTR_3g109760	92.638	326	13	4	1	323	1	318	0.0	546
MS.gene40283.t1	MTR_1g006650	53.143	350	119	10	6	323	8	344	1.81e-107	317
MS.gene40283.t1	MTR_8g013950	45.082	366	134	14	1	323	1	342	3.49e-80	247
MS.gene40283.t1	MTR_4g071590	36.824	296	144	11	1	281	13	280	2.33e-43	151
MS.gene40283.t1	MTR_4g471590	36.824	296	144	11	1	281	13	280	2.33e-43	151
MS.gene40283.t1	MTR_8g076340	39.362	282	128	11	19	282	32	288	5.22e-42	147
MS.gene40283.t1	MTR_3g117380	39.852	271	142	10	19	282	43	299	1.16e-39	142
MS.gene40283.t1	MTR_1g094930	37.597	258	97	8	83	276	49	306	2.02e-37	136
MS.gene40283.t1	MTR_6g032830	37.054	224	92	5	104	278	35	258	3.82e-36	131
MS.gene40283.t1	MTR_5g021340	40.708	226	96	7	90	282	150	370	6.08e-35	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40283.t1	AT4G32890	49.367	316	115	10	30	323	16	308	3.77e-86	261
MS.gene40283.t1	AT5G25830	47.458	354	128	11	2	323	4	331	4.27e-86	262
MS.gene40283.t1	AT3G60530	48.039	204	74	5	89	292	63	234	1.64e-51	171
MS.gene40283.t1	AT2G45050	47.907	215	76	7	89	289	65	257	1.17e-48	164
MS.gene40283.t1	AT4G36240	39.300	257	111	8	32	279	11	231	2.74e-38	136
MS.gene40283.t1	AT5G66320	39.768	259	98	7	76	292	87	329	6.65e-38	138
MS.gene40283.t1	AT5G66320	39.768	259	98	7	76	292	87	329	6.65e-38	138
MS.gene40283.t1	AT3G24050	77.941	68	15	0	211	278	193	260	4.37e-33	123
MS.gene40283.t1	AT1G08010	67.073	82	21	1	209	284	217	298	4.40e-32	121
MS.gene40283.t1	AT1G08010	67.073	82	21	1	209	284	217	298	4.40e-32	121

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Find 91 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGACCTCGGTGATGG+AGG	0.595010	3.3:-90925133	MS.gene40283:CDS
AAATGATTCCTCAGCAAATT+TGG	0.139979	3.3:+90925414	None:intergenic
AAGACACTATGCAATGCGTG+TGG	0.676419	3.3:-90925040	MS.gene40283:CDS
AAGACTCCACAGTGGCGCAC+CGG	0.525177	3.3:-90925076	MS.gene40283:CDS
AAGGGCCGTCGGCAGAATTC+TGG	0.309787	3.3:+90926980	None:intergenic
AAGTAATCATCACCGTTGGA+TGG	0.601160	3.3:+90924830	None:intergenic
AATCAAGTAATCATCACCGT+TGG	0.595692	3.3:+90924826	None:intergenic
AATGGCCCGGTGCGCCACTG+TGG	0.564107	3.3:+90925070	None:intergenic
ACAAATGTTGGGCTTGCTGC+AGG	0.475199	3.3:+90924977	None:intergenic
ACACCCTCAAGTGTCTGTCC+CGG	0.593472	3.3:-90925296	MS.gene40283:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTAAAAATAGAGCCCC+GGG	+	chr3.3:90925630-90925649	None:intergenic	30.0%
AAATGATTCCTCAGCAAATT+TGG	+	chr3.3:90926598-90926617	None:intergenic	30.0%
ATATATATAATGGCACGTAC+CGG	+	chr3.3:90925075-90925094	None:intergenic	30.0%
ATATCAACTGTAGCTTATGA+AGG	+	chr3.3:90926632-90926651	None:intergenic	30.0%
ATCTGTTCCATTGAATTTGA+GGG	-	chr3.3:90925211-90925230	MS.gene40283:CDS	30.0%
CAAAATTAAAAATAGAGCCC+CGG	+	chr3.3:90925631-90925650	None:intergenic	30.0%
CACACATATTAAAGAAAAGC+AGG	+	chr3.3:90925353-90925372	None:intergenic	30.0%
TATCTGTTCCATTGAATTTG+AGG	-	chr3.3:90925210-90925229	MS.gene40283:CDS	30.0%
AAATTAAAAATAGAGCCCCG+GGG	+	chr3.3:90925629-90925648	None:intergenic	35.0%
AATCAAGTAATCATCACCGT+TGG	+	chr3.3:90927186-90927205	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	90924787	90927244	90924787	ID=MS.gene40283
chr3.3	mRNA	90924787	90927244	90924787	ID=MS.gene40283.t1;Parent=MS.gene40283
chr3.3	exon	90926957	90927244	90926957	ID=MS.gene40283.t1.exon1;Parent=MS.gene40283.t1
chr3.3	CDS	90926957	90927244	90926957	ID=cds.MS.gene40283.t1;Parent=MS.gene40283.t1
chr3.3	exon	90924787	90925470	90924787	ID=MS.gene40283.t1.exon2;Parent=MS.gene40283.t1
chr3.3	CDS	90924787	90925470	90924787	ID=cds.MS.gene40283.t1;Parent=MS.gene40283.t1

Gene Sequence

>MS.gene40283

ATGGAAGCTCAAGAGTTTTTCCAAACCAGCTTCTGTCCACAATCCGACAACAATTCCACCACAAACAATGTAAACACTGCTGCTTCCGACCACTTCATCGTTGAAGATCTCTTTGATTTCTCTAATGAGGATGTTGCCATTGAAGACCCCACTTTCGAAGAATCTCCTCCTACCAACTCTAATGATTCTCCTCCTCTTGAAACCAATCCCACTTCCAATTTTTTCACCGACGTCAATTCGTGCCAGAATTCTGCCGACGGCCCTTTCTCCGGCGAACTCTCCGTTCCGGTACGTGCCATTATATATATAGTAATTATTGTACATATGTAGTTAGTTTTCTTTTTGACTCAACATGTGTAGTTAGGTAGCTTATTGATATTATTTATATACAACAATTGGCTTGTTTTTACTATCCTACAATTTTATCTGTTCCATTGAATTTGAGGGAAACCTAAATAATACTCTCTCTTTATTTCACAATATCTGTCACATTTGTAAAAACAATTGTTCAAAAAAATTGATAAGAGCAAACAGTTAATAAATTTAATTTAGTAAAATCGATACCTGCTTTTCTTTAATATGTGTGAAACTAAAAAACGTGATAGTTATTTTGAAATTGAGTGATATTATTACTCACTCATCCATAATTGTCATACTTATGAAATTTTGTCTAAAATGAATATTATTTTTAAGGAGAATGTTAACCGGTGCCCCGGGGCATTGGTTAAGCAGCTAAAAGATGTAAGATTTTATTAAAAAGTTGTGTAATAATTAGTTAGTCAAAAGTATCAGTTTATATTTCCAAGACATTTTTTCTACTTTTGGATTCTTAACAAGTGCCCCGGGGCTCTATTTTTAATTTTGTCACATATTCGATAACGTTGATATAATGAATTATTATCCTTTTTTTATCATATATTTATAGTCTTTTATTTAGTCGTGGGAAATAAGAAAATGTGAGGTATATGGGATAGAGGGAGTGAATTTTGAATTTCAAGGGTTGAATGTAAAGTCAATGAGTAAACAGTTTACTTGTAAATATTTTAATTTTAATCTAATTAATTAGTTAGAAAATATATTACAATGATTAAATGCACACGAAATGAAAATTTTAATTATTTATTTATCATACAAAAATAAATGTACATTTTTTTAAATTATCATTTTATTTTATTCTTTTAAAATAGTACTCTCTCTAAATGTCACATTTATATTTATTTTTTTAAATGATACTCCCCCTATATTTTTTTTTTAACTATAGTCAAATCTATTTCAATTAAGAAACCCTTAGCTTTTATTACAAATATAAATAAGTGCAATATTCCCTTCTCTAAACAAAAATAATAATAAGTGCAATAAGCTAATAAATAGTTAAGAAAATACTCTAGAAAAATAAAAATAAAACGCTCCATCAAATATAATAAAATTTATTTTTATTCTCATTATGTGTAAATAATCTTAAGATAACACTTTTCCTAAAAAAAGTATATCTTAAGACAACAATTAAAAAGGAACCGATATAGTATCTTAAAAATGATAGTATTATATAAAGTAAGAATTCTAATGGAGACAAAAAAAAAAAGAATGTAAGAATTAGTTAAATTTTTTTCCTTATGATACACACCTACACGGCGAACATAAGATATTTTTATTTATAGTTTATTCCTTAGAAAATACATAACCTAATATGGAGTATAAAAAGAAAAAAGAAAAAAAAAACATATGTTAATATTTTCTTGTTAATTGACATATTTTAAATTTTTTATTTGTGAAGCAATATGATGATCTTGCGCAGCTAGAATGGATGTCCAAATTTGCTGAGGAATCATTTTCAAGTGAGGACCTTCATAAGCTACAGTTGATATCTGGATTAAAGGCACCAAATAACGTTGAATCAAAAACTCATGAAGAACGCAACCCAACAATACACCCTCAAGTGTCTGTCCCGGCAAAAGCCCGTAGTAAACGGTCACGTGTGCCTCCATGCAACTGGACTTCGCGCCTTCTAGTTCTCTCTCCAACCATGACCACCACCACCACATCTTCTCACTCTGACACCATGGCTCCACCAAAAAAGCCCTCTCCAAGAAAAAGAGACCTCGGTGATGGAGGAGAGGGTCGCAAGTGTCTTCATTGCGCCACTGATAAGACTCCACAGTGGCGCACCGGGCCATTAGGTCCAAAGACACTATGCAATGCGTGTGGAGTCAGATACAAGTCAGGTCGACTCGTACCTGAGTATAGGCCTGCAGCAAGCCCAACATTTGTGTTGACTAAGCACTCCAACTCACATCGAAAGGTGCAAGAGCTCCGACGCCAGAAGGAGATGATGAGGGCCCAACAACACCAATTGTTGCAACTACAACATCATCACAGCATTATGTTTGAAGGACCATCCAACGGTGATGATTACTTGATTCATCAACACGTGGGACCTGATTTCACGCACCTCATGTAG

Protein sequence

>MS.gene40283.t1

MEAQEFFQTSFCPQSDNNSTTNNVNTAASDHFIVEDLFDFSNEDVAIEDPTFEESPPTNSNDSPPLETNPTSNFFTDVNSCQNSADGPFSGELSVPQYDDLAQLEWMSKFAEESFSSEDLHKLQLISGLKAPNNVESKTHEERNPTIHPQVSVPAKARSKRSRVPPCNWTSRLLVLSPTMTTTTTSSHSDTMAPPKKPSPRKRDLGDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQHQLLQLQHHHSIMFEGPSNGDDYLIHQHVGPDFTHLM