AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40301

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40301.t1 MTR_3g110180 95.392 434 8 2 1 426 1 430 0.0 852
MS.gene40301.t1 MTR_3g110180 95.161 434 8 3 1 426 1 429 0.0 820
MS.gene40301.t1 MTR_1g004990 60.417 432 152 3 1 424 1 421 0.0 522
MS.gene40301.t1 MTR_6g087070 62.044 411 132 6 1 400 1 398 1.32e-180 510
MS.gene40301.t1 MTR_8g102930 58.810 437 156 6 1 426 1 424 2.03e-175 497
MS.gene40301.t1 MTR_4g126010 64.162 346 109 3 1 337 1 340 6.73e-163 466
MS.gene40301.t1 MTR_2g099670 65.205 342 108 3 1 331 1 342 9.39e-163 467
MS.gene40301.t1 MTR_1g069720 53.972 428 169 6 1 405 1 423 9.40e-160 458
MS.gene40301.t1 MTR_1g042280 67.752 307 91 1 1 299 2 308 8.06e-157 451
MS.gene40301.t1 MTR_7g097160 65.312 320 103 1 1 312 1 320 3.45e-156 449
MS.gene40301.t1 MTR_2g039930 62.908 337 108 4 1 327 1 330 8.88e-156 449
MS.gene40301.t1 MTR_8g018310 64.179 335 103 4 1 327 1 326 1.14e-155 449
MS.gene40301.t1 MTR_8g018310 64.179 335 103 4 1 327 1 326 1.03e-154 444
MS.gene40301.t1 MTR_1g075870 65.015 323 97 2 1 315 2 316 1.71e-154 440
MS.gene40301.t1 MTR_1g075870 65.015 323 97 2 1 315 2 316 1.04e-153 443
MS.gene40301.t1 MTR_1g042280 70.149 268 80 0 32 299 9 276 3.68e-144 413
MS.gene40301.t1 MTR_2g099670 68.214 280 86 2 55 331 11 290 1.23e-139 406
MS.gene40301.t1 MTR_0492s0030 64.667 300 96 2 1 290 1 300 2.38e-139 403
MS.gene40301.t1 MTR_0543s0020 64.667 300 96 2 1 290 1 300 2.38e-139 403
MS.gene40301.t1 MTR_1g075870 68.045 266 77 1 50 315 2 259 2.85e-133 385
MS.gene40301.t1 MTR_2g039930 65.625 256 79 3 74 327 1 249 5.81e-122 360
MS.gene40301.t1 MTR_7g097160 69.318 176 54 0 136 311 25 200 6.89e-85 263
MS.gene40301.t1 MTR_3g110240 37.121 264 155 5 7 265 133 390 2.25e-51 184
MS.gene40301.t1 MTR_1g007150 36.364 264 157 5 7 265 136 393 3.48e-50 180
MS.gene40301.t1 MTR_7g006030 35.206 267 162 5 7 265 49 312 5.75e-50 178
MS.gene40301.t1 MTR_7g085540 36.667 270 161 5 7 269 159 425 6.35e-50 180
MS.gene40301.t1 MTR_1g116210 34.286 280 162 6 5 265 113 389 2.82e-47 172
MS.gene40301.t1 MTR_8g014050 34.074 270 162 7 7 265 140 404 1.63e-42 159
MS.gene40301.t1 MTR_7g116400 52.308 65 30 1 74 137 3 67 7.94e-16 72.8
MS.gene40301.t1 MTR_7g118020 26.728 217 133 5 6 205 141 348 1.72e-11 66.6
MS.gene40301.t1 MTR_4g086660 30.675 163 103 4 44 205 188 341 1.80e-11 66.2
MS.gene40301.t1 MTR_8g079790 29.448 163 105 4 44 205 179 332 3.13e-11 65.5
MS.gene40301.t1 MTR_7g073520 32.000 125 72 3 99 221 250 363 3.66e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40301.t1 AT4G28880 59.346 428 145 6 1 416 1 411 2.11e-177 501
MS.gene40301.t1 AT4G28880 59.346 428 145 6 1 416 1 411 2.11e-177 501
MS.gene40301.t1 AT4G28880 59.346 428 145 6 1 416 1 411 2.11e-177 501
MS.gene40301.t1 AT4G28880 59.346 428 145 6 1 416 1 411 2.11e-177 501
MS.gene40301.t1 AT4G28860 59.569 418 144 5 1 409 1 402 8.66e-176 498
MS.gene40301.t1 AT4G28860 71.384 318 83 1 1 310 1 318 3.10e-174 492
MS.gene40301.t1 AT4G26100 55.422 415 143 9 1 399 1 389 1.40e-158 455
MS.gene40301.t1 AT5G57015 64.308 325 106 2 1 315 1 325 5.90e-156 448
MS.gene40301.t1 AT1G72710 64.329 328 107 3 1 319 1 327 6.89e-156 449
MS.gene40301.t1 AT5G44100 69.360 297 83 1 1 289 1 297 6.71e-155 447
MS.gene40301.t1 AT5G44100 69.360 297 83 1 1 289 1 297 6.71e-155 447
MS.gene40301.t1 AT1G03930 67.340 297 89 1 1 289 1 297 9.33e-154 444
MS.gene40301.t1 AT4G28540 68.121 298 87 1 1 290 5 302 2.06e-153 443
MS.gene40301.t1 AT3G23340 64.688 320 104 2 1 312 1 319 3.43e-153 441
MS.gene40301.t1 AT2G19470 62.310 329 109 2 1 321 1 322 2.41e-152 439
MS.gene40301.t1 AT4G14340 55.000 400 153 5 1 391 7 388 3.14e-151 437
MS.gene40301.t1 AT4G14340 62.090 335 111 2 1 327 7 333 4.90e-151 433
MS.gene40301.t1 AT5G43320 68.013 297 87 1 1 289 1 297 8.92e-150 434
MS.gene40301.t1 AT3G23340 64.423 312 104 2 1 312 1 305 3.80e-149 430
MS.gene40301.t1 AT5G43320 61.383 347 122 3 1 339 1 343 9.72e-149 427
MS.gene40301.t1 AT5G43320 61.383 347 122 3 1 339 1 343 9.72e-149 427
MS.gene40301.t1 AT1G04440 67.340 297 89 1 1 289 1 297 9.07e-148 428
MS.gene40301.t1 AT4G08800 57.823 294 84 3 1 286 1 262 9.91e-120 350
MS.gene40301.t1 AT2G25760 36.194 268 162 4 7 265 119 386 6.46e-51 182
MS.gene40301.t1 AT3G03940 36.296 270 162 5 7 269 152 418 9.62e-51 182
MS.gene40301.t1 AT3G13670 35.424 271 164 5 7 269 149 416 1.15e-50 182
MS.gene40301.t1 AT2G25760 36.567 268 158 5 7 265 119 383 2.60e-50 181
MS.gene40301.t1 AT5G18190 35.662 272 165 5 7 271 142 410 1.19e-49 179
MS.gene40301.t1 AT5G18190 35.662 272 165 5 7 271 142 410 1.19e-49 179
MS.gene40301.t1 AT3G50530 31.288 163 102 4 44 205 199 352 4.30e-13 71.6
MS.gene40301.t1 AT3G49370 28.440 218 130 6 7 207 140 348 5.24e-12 68.2
MS.gene40301.t1 AT3G50530 28.495 186 108 6 44 205 199 383 1.88e-11 66.6
MS.gene40301.t1 AT5G24430 27.982 218 131 6 7 207 141 349 5.85e-11 64.7

Find 95 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTTCCTGTGGGCCTTTC+AGG 0.062348 3.2:-87956471 None:intergenic
TCAAACCTAGGTCGTGTATT+TGG 0.098979 3.2:+87956492 MS.gene40301:CDS
AGGAATATGCTTGCTTGTTT+TGG 0.195324 3.2:-87953208 None:intergenic
TATTCTGGTTATGGATCTTC+TGG 0.212846 3.2:+87952618 MS.gene40301:CDS
TTTGATCAAGATCCAGATTA+TGG 0.217415 3.2:+87954741 MS.gene40301:CDS
TTGGAGAAGACTGTATAATT+TGG 0.243957 3.2:-87952445 None:intergenic
GAATCCAGCTGCTTGAAATA+TGG 0.275973 3.2:-87956524 None:intergenic
CAAGCAAGCATATTCCTTAT+AGG 0.278492 3.2:+87953214 MS.gene40301:CDS
ATAACTTCCTAATGGGTATT+AGG 0.293154 3.2:+87953013 MS.gene40301:CDS
GCAGCTGGATTCCTTCTTTA+CGG 0.295950 3.2:+87956535 MS.gene40301:CDS
CAAACCTAGGTCGTGTATTT+GGG 0.321394 3.2:+87956493 MS.gene40301:CDS
GCAAAGTCGCCGTGATGATT+TGG 0.329153 3.2:+87954151 MS.gene40301:CDS
ATACCCATTAGGAAGTTATC+TGG 0.331317 3.2:-87953009 None:intergenic
TAGGTTTATATTATTGATTT+CGG 0.339874 3.2:+87953162 MS.gene40301:intron
TGATGGAGATCATAATATTC+TGG 0.354764 3.2:+87952603 MS.gene40301:CDS
GGATCTTCTGGGACGTAGTC+TGG 0.355238 3.2:+87952630 MS.gene40301:CDS
AGCATTTAGATTCTTTAGAT+TGG 0.357090 3.2:-87956164 None:intergenic
CAAACCAGATAACTTCCTAA+TGG 0.358154 3.2:+87953005 MS.gene40301:CDS
CGCTTTAAGAATCCATAATC+TGG 0.362175 3.2:-87954753 None:intergenic
GTCCTTATGTACTTCTTAAG+AGG 0.366081 3.2:+87954188 MS.gene40301:CDS
AACAACAAAATATACCTATA+AGG 0.367234 3.2:-87953228 None:intergenic
CGTGATGATTTGGAGTCTAT+TGG 0.367974 3.2:+87954161 MS.gene40301:CDS
AGATCATAATATTCTGGTTA+TGG 0.373211 3.2:+87952609 MS.gene40301:CDS
TGAGGTCGTTGCCGTCAAAA+TGG 0.379560 3.2:+87951925 MS.gene40301:CDS
TTTAAGATTGGTCGCAAAAT+CGG 0.381240 3.2:+87951761 MS.gene40301:CDS
CACATTTGGACGATCAAGAT+TGG 0.387870 3.2:-87956122 None:intergenic
TATATTATTGATTTCGGACT+AGG 0.399991 3.2:+87953168 MS.gene40301:CDS
AAACCAGATAACTTCCTAAT+GGG 0.430261 3.2:+87953006 MS.gene40301:CDS
TTTATAACTTACTTTCTCCT+TGG 0.432685 3.2:-87952464 None:intergenic
TTAGGCTGCACATGCACATT+TGG 0.436450 3.2:-87956136 None:intergenic
AATCCAGCTGCTTGAAATAT+GGG 0.440658 3.2:-87956523 None:intergenic
ACTCCCATATTTCAAGCAGC+TGG 0.449190 3.2:+87956520 MS.gene40301:CDS
TGCTCCCGCAGAAGACAAAA+AGG 0.451965 3.2:-87952657 None:intergenic
TTTAGATTCTTTAGATTGGA+TGG 0.456240 3.2:-87956160 None:intergenic
GTTGGCGGAAAGTTTAAGAT+TGG 0.473575 3.2:+87951749 MS.gene40301:CDS
ATTCTGGTTATGGATCTTCT+GGG 0.476383 3.2:+87952619 MS.gene40301:CDS
ACTATGACAATTTATTCGAC+TGG 0.479555 3.2:+87955353 MS.gene40301:CDS
TGCAATACTCACTTAGGAAT+CGG 0.487644 3.2:+87954047 MS.gene40301:CDS
TTCTTTAGATTGGATGGCTT+AGG 0.488699 3.2:-87956154 None:intergenic
TTCCTCTTAAGAAGTACATA+AGG 0.490195 3.2:-87954190 None:intergenic
GAAGAAATTCGCCGTAAAGA+AGG 0.496549 3.2:-87956546 None:intergenic
CAGTCTACAACCAGTGGTTG+TGG 0.500770 3.2:+87955616 MS.gene40301:CDS
GTACCGCACCATCTCATAGT+TGG 0.509024 3.2:-87952580 None:intergenic
TCTAAATGCTAAGAATCATA+CGG 0.510015 3.2:+87956177 MS.gene40301:CDS
CGTGAGTTGTTCACTCGTGA+AGG 0.516158 3.2:+87954783 MS.gene40301:CDS
AATAGAGTACATGCATTCCA+AGG 0.528223 3.2:+87952963 MS.gene40301:CDS
GCATCCACAACTATTGTATG+AGG 0.532224 3.2:+87952422 MS.gene40301:CDS
GCAAGTTGCAATACTCACTT+AGG 0.533425 3.2:+87954041 MS.gene40301:CDS
AACATGGAGTGGGTCGTTGG+CGG 0.534619 3.2:+87951734 None:intergenic
ACCTAGGTTTGAAGTTCCTG+TGG 0.540684 3.2:-87956481 None:intergenic
TATTAGGAGAAAATCAAGTC+AGG 0.540941 3.2:+87953029 MS.gene40301:CDS
TTGGCCTCATACAATAGTTG+TGG 0.548570 3.2:-87952426 None:intergenic
CAATGATCCGTCCACTTCAT+CGG 0.549710 3.2:+87956413 MS.gene40301:CDS
TTATGTACTTCTTAAGAGGA+AGG 0.553282 3.2:+87954192 MS.gene40301:CDS
CTTTCAGACCCTGCCAAGGA+AGG 0.558293 3.2:-87954341 None:intergenic
ATGAGATGGTGCGGTACTGA+TGG 0.560221 3.2:+87952586 MS.gene40301:CDS
AACAACATGGAGTGGGTCGT+TGG 0.562685 3.2:+87951731 None:intergenic
TTTGATGTTAGCAGACCAGA+TGG 0.566646 3.2:+87952699 MS.gene40301:CDS
TGTAGGAGAAGAAGAGAACA+AGG 0.572961 3.2:+87952400 MS.gene40301:intron
CTAAATGCTAAGAATCATAC+GGG 0.574445 3.2:+87956178 MS.gene40301:CDS
TTTGGGCAAAGCCGATGAAG+TGG 0.584387 3.2:-87956424 None:intergenic
TCTAAGCCTGAAAGGCCCAC+AGG 0.585651 3.2:+87956465 MS.gene40301:CDS
GCACTAGGTACGGCATCTGA+AGG 0.595661 3.2:-87955572 None:intergenic
TATTCCCAAATACACGACCT+AGG 0.597805 3.2:-87956497 None:intergenic
AAAGTAAGACGCAAACTCCA+CGG 0.599632 3.2:-87954697 None:intergenic
CATCCGCTAACAACATGGAG+TGG 0.601509 3.2:+87951723 None:intergenic
AAGTAAGACGCAAACTCCAC+GGG 0.604948 3.2:-87954696 None:intergenic
CCTAGGTTTGAAGTTCCTGT+GGG 0.606084 3.2:-87956480 None:intergenic
ACTAGGAACAGCACTAGGTA+CGG 0.607129 3.2:-87955582 None:intergenic
ACCACTGGTTGTAGACTGCT+AGG 0.607910 3.2:-87955611 None:intergenic
ATCAGCAGACGCAACAGACA+AGG 0.613053 3.2:+87955389 MS.gene40301:CDS
ATCCGCTAACAACATGGAGT+GGG 0.614583 3.2:+87951724 None:intergenic
TGGATCTTGATCAAATGTCA+AGG 0.615184 3.2:-87954733 None:intergenic
GTGGTATTCCAACTATGAGA+TGG 0.615515 3.2:+87952572 MS.gene40301:CDS
AGACTGCTAGGCACAGCACT+AGG 0.616647 3.2:-87955599 None:intergenic
AAGGAGACAAAAGCAATCAT+CGG 0.624317 3.2:+87955408 MS.gene40301:CDS
ATTGGTCGCAAAATCGGAAG+CGG 0.626522 3.2:+87951767 MS.gene40301:CDS
CTCAGAGGTGTCCATATCAG+AGG 0.626948 3.2:-87951906 None:intergenic
GGCAAAGCCGATGAAGTGGA+CGG 0.627991 3.2:-87956420 None:intergenic
AAAATGTCTCTAAGCCTGAA+AGG 0.629959 3.2:+87956457 MS.gene40301:CDS
CCCACAGGAACTTCAAACCT+AGG 0.637853 3.2:+87956480 MS.gene40301:CDS
AAATTATACAGTCTTCTCCA+AGG 0.638640 3.2:+87952447 MS.gene40301:CDS
GCCTAGCAGTCTACAACCAG+TGG 0.640292 3.2:+87955610 MS.gene40301:CDS
ACAGCTTTCAGACCCTGCCA+AGG 0.644712 3.2:-87954345 None:intergenic
ATTGAAAATGTATACCTCAG+TGG 0.646544 3.2:-87954418 None:intergenic
TCTTCTGGGACGTAGTCTGG+AGG 0.649427 3.2:+87952633 MS.gene40301:CDS
TCTGAAAGCTGTCACCAAAG+AGG 0.650261 3.2:+87954356 MS.gene40301:CDS
ACAGCACTAGGAACAGCACT+AGG 0.656993 3.2:-87955587 None:intergenic
ATAGAGTACATGCATTCCAA+GGG 0.660373 3.2:+87952964 MS.gene40301:CDS
GCTTTGCGAATCATATCCCG+TGG 0.663642 3.2:+87954680 MS.gene40301:CDS
CTCTGATATGGACACCTCTG+AGG 0.669495 3.2:+87951907 MS.gene40301:CDS
CAATAGACTCCAAATCATCA+CGG 0.670210 3.2:-87954160 None:intergenic
ATTCCAACTATGAGATGGTG+CGG 0.673968 3.2:+87952577 MS.gene40301:CDS
TTTGACGGCAACGACCTCAG+AGG 0.711927 3.2:-87951921 None:intergenic
GAAGTTATCAACTTCCACTG+AGG 0.761442 3.2:+87954404 MS.gene40301:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAAAATAATAATAATAACA+AGG - chr3.2:87955923-87955942 None:intergenic 10.0%
!!! ACATTTTGAATTTTAAAAAA+TGG + chr3.2:87954246-87954265 MS.gene40301:intron 10.0%
!!! ATATTTCTAATCTTTTATTA+TGG + chr3.2:87953262-87953281 MS.gene40301:intron 10.0%
!!! TATTATTATTATTTTTCACT+TGG + chr3.2:87955926-87955945 MS.gene40301:intron 10.0%
!! AAAAAAATGTCTAAATTTGA+TGG + chr3.2:87953617-87953636 MS.gene40301:intron 15.0%
!! AAATAAACTTCTTATTACAT+CGG - chr3.2:87955308-87955327 None:intergenic 15.0%
!! TGATATTAATTATTCTTCAT+TGG + chr3.2:87953451-87953470 MS.gene40301:intron 15.0%
!!! ATTCTTTTTAGGTAAATTTA+GGG + chr3.2:87954291-87954310 MS.gene40301:intron 15.0%
!!! TAAACAAATCAAGTATTTTT+AGG - chr3.2:87953323-87953342 None:intergenic 15.0%
!!! TAGGTTTATATTATTGATTT+CGG + chr3.2:87953162-87953181 MS.gene40301:intron 15.0%
!!! TTGTTTTGATTTTTTTTACT+TGG + chr3.2:87956345-87956364 MS.gene40301:intron 15.0%
!! AAAATTAAGAAGAAATCCAA+TGG - chr3.2:87956238-87956257 None:intergenic 20.0%
!! AACAACAAAATATACCTATA+AGG - chr3.2:87953231-87953250 None:intergenic 20.0%
!! AATAAACTTCTTATTACATC+GGG - chr3.2:87955307-87955326 None:intergenic 20.0%
!! AATAATAACAAGGAATTTGT+TGG - chr3.2:87955913-87955932 None:intergenic 20.0%
!! AATCAGGAAAGTTTAATAAT+CGG - chr3.2:87955514-87955533 None:intergenic 20.0%
!! ATCATAAAATGTTAGATAGT+TGG - chr3.2:87955097-87955116 None:intergenic 20.0%
!! CAAAATAGAATGAAATTTGT+GGG - chr3.2:87954115-87954134 None:intergenic 20.0%
!! GAAATTAAAAACTAGATTGA+GGG - chr3.2:87954467-87954486 None:intergenic 20.0%
!! GATGTAATAAGAAGTTTATT+TGG + chr3.2:87955307-87955326 MS.gene40301:intron 20.0%
!! GTAAGAAAATTACAATGAAT+GGG - chr3.2:87954228-87954247 None:intergenic 20.0%
!! TAGACCATAAAAATGTTTAA+AGG - chr3.2:87955452-87955471 None:intergenic 20.0%
!! TGTAAGAAAATTACAATGAA+TGG - chr3.2:87954229-87954248 None:intergenic 20.0%
!! TTTAAGTAATTACTGTCAAT+TGG + chr3.2:87954836-87954855 MS.gene40301:intron 20.0%
!!! AACAATATTAAGAGCTTTTA+AGG + chr3.2:87954542-87954561 MS.gene40301:intron 20.0%
!!! AACATTAAAGTATTAACGTA+AGG - chr3.2:87953694-87953713 None:intergenic 20.0%
!!! AAGTTATAAAAGAAGCATTT+GGG + chr3.2:87952477-87952496 MS.gene40301:intron 20.0%
!!! AATTTTTGGATATAGAGTAA+TGG - chr3.2:87955135-87955154 None:intergenic 20.0%
!!! ACATTAAAGTATTAACGTAA+GGG - chr3.2:87953693-87953712 None:intergenic 20.0%
!!! AGAGAGAATAAAATTTTAAC+AGG + chr3.2:87954005-87954024 MS.gene40301:intron 20.0%
!!! ATATCCAAAAATTCATGTTT+TGG + chr3.2:87955142-87955161 MS.gene40301:intron 20.0%
!!! ATGATAATTTGCTTATTAGT+TGG + chr3.2:87954890-87954909 MS.gene40301:intron 20.0%
!!! ATGATATTAAATATGGCTTT+TGG + chr3.2:87952784-87952803 MS.gene40301:intron 20.0%
!!! ATTTCCAAAACATGAATTTT+TGG - chr3.2:87955149-87955168 None:intergenic 20.0%
!!! CATTCTTTTTAGGTAAATTT+AGG + chr3.2:87954290-87954309 MS.gene40301:intron 20.0%
!!! GAGAGAATAAAATTTTAACA+GGG + chr3.2:87954006-87954025 MS.gene40301:intron 20.0%
!!! TAAGTTATAAAAGAAGCATT+TGG + chr3.2:87952476-87952495 MS.gene40301:intron 20.0%
!!! TAGGTATTTTTTGCTTATAA+TGG + chr3.2:87953744-87953763 MS.gene40301:intron 20.0%
!!! TCATGTTTTTACATGTTATA+AGG + chr3.2:87953286-87953305 MS.gene40301:intron 20.0%
!!! TCATTTGGTGAAATTTATAT+AGG + chr3.2:87951791-87951810 MS.gene40301:intron 20.0%
!!! TGAAAGTGTGTAAAAAATAA+AGG - chr3.2:87952310-87952329 None:intergenic 20.0%
!!! TGAACCTTTAAACATTTTTA+TGG + chr3.2:87955445-87955464 MS.gene40301:intron 20.0%
!!! TTCCTTGATGATATTAAATA+TGG + chr3.2:87952777-87952796 MS.gene40301:intron 20.0%
! AAAACTGCTACTATATTGAT+AGG - chr3.2:87952831-87952850 None:intergenic 25.0%
! AAGAAAGGTTAAATACTTAG+TGG - chr3.2:87954958-87954977 None:intergenic 25.0%
! AAGACATATGAAACGAATTA+TGG - chr3.2:87953112-87953131 None:intergenic 25.0%
! AGACATATGAAACGAATTAT+GGG - chr3.2:87953111-87953130 None:intergenic 25.0%
! AGCATTTAGATTCTTTAGAT+TGG - chr3.2:87956167-87956186 None:intergenic 25.0%
! AGCCATATTTAATATCATCA+AGG - chr3.2:87952782-87952801 None:intergenic 25.0%
! AGTTTAACTAGTCAAGTTAA+TGG + chr3.2:87953950-87953969 MS.gene40301:intron 25.0%
! ATAAACTTCTTATTACATCG+GGG - chr3.2:87955306-87955325 None:intergenic 25.0%
! ATCAGGAAAGTTTAATAATC+GGG - chr3.2:87955513-87955532 None:intergenic 25.0%
! CACAAAATTTGCATAACTAA+AGG - chr3.2:87954987-87955006 None:intergenic 25.0%
! CATTGGATAACAGTTAATAA+AGG + chr3.2:87953468-87953487 MS.gene40301:intron 25.0%
! CCAAAATAGAATGAAATTTG+TGG - chr3.2:87954116-87954135 None:intergenic 25.0%
! GGAAATTAAAAACTAGATTG+AGG - chr3.2:87954468-87954487 None:intergenic 25.0%
! GTTAATACTTTAATGTTGTG+AGG + chr3.2:87953697-87953716 MS.gene40301:intron 25.0%
! TAAATTCTAACTCATTCTAC+TGG - chr3.2:87955777-87955796 None:intergenic 25.0%
! TACAAAATGTTGATCTCATT+AGG - chr3.2:87952070-87952089 None:intergenic 25.0%
! TCTAAATGCTAAGAATCATA+CGG + chr3.2:87956177-87956196 MS.gene40301:CDS 25.0%
! TCTAAATTCATTATCTTCAC+TGG + chr3.2:87953060-87953079 MS.gene40301:intron 25.0%
! TTATCAAGGTCAAAACATTA+GGG - chr3.2:87953977-87953996 None:intergenic 25.0%
! TTCTATTCAACATTCATATG+CGG + chr3.2:87951855-87951874 MS.gene40301:intron 25.0%
! TTTAGATTCTTTAGATTGGA+TGG - chr3.2:87956163-87956182 None:intergenic 25.0%
! TTTATAACTTACTTTCTCCT+TGG - chr3.2:87952467-87952486 None:intergenic 25.0%
! TTTATCAAGGTCAAAACATT+AGG - chr3.2:87953978-87953997 None:intergenic 25.0%
!! AAAGAAACAAACCATTTTGA+CGG - chr3.2:87951939-87951958 None:intergenic 25.0%
!! AGATCATAATATTCTGGTTA+TGG + chr3.2:87952609-87952628 MS.gene40301:CDS 25.0%
!! ATCAATTGCACATTCTTTTT+AGG + chr3.2:87954280-87954299 MS.gene40301:intron 25.0%
!! ATCTCAAATAATTCCTTTTC+CGG + chr3.2:87953877-87953896 MS.gene40301:intron 25.0%
!! ATGAGATCAACATTTTGTAT+CGG + chr3.2:87952071-87952090 MS.gene40301:intron 25.0%
!! CCACAAATTTCATTCTATTT+TGG + chr3.2:87954113-87954132 MS.gene40301:intron 25.0%
!! TCTATTTACAAAAGTTCTAG+AGG + chr3.2:87953347-87953366 MS.gene40301:intron 25.0%
!! TTTTAATGCTCATTGCAAAA+CGG + chr3.2:87955805-87955824 MS.gene40301:intron 25.0%
!!! ATTATTTTTCACTTGGAAGT+TGG + chr3.2:87955933-87955952 MS.gene40301:intron 25.0%
!!! CTGCAATTTGTTACATTTAT+AGG + chr3.2:87953143-87953162 MS.gene40301:intron 25.0%
!!! GAATAAAATTTTAACAGGGA+CGG + chr3.2:87954010-87954029 MS.gene40301:CDS 25.0%
!!! GCTACATTTCTTTATTTTGT+AGG + chr3.2:87952383-87952402 MS.gene40301:intron 25.0%
!!! TATATTATTGATTTCGGACT+AGG + chr3.2:87953168-87953187 MS.gene40301:CDS 25.0%
!!! TGAATTATTGATTCCTGAAA+AGG - chr3.2:87956074-87956093 None:intergenic 25.0%
!!! TGCTTGCTTTATTTTTCAAT+TGG + chr3.2:87952745-87952764 MS.gene40301:intron 25.0%
AAACCAGATAACTTCCTAAT+GGG + chr3.2:87953006-87953025 MS.gene40301:CDS 30.0%
AAATTATACAGTCTTCTCCA+AGG + chr3.2:87952447-87952466 MS.gene40301:CDS 30.0%
AACGAATTCTGTTCAATTGT+GGG + chr3.2:87955695-87955714 MS.gene40301:intron 30.0%
AACTAAAGGAGAAAGAAGAA+AGG - chr3.2:87954973-87954992 None:intergenic 30.0%
ACCATAATAAGTTTGGAAGT+AGG + chr3.2:87953725-87953744 MS.gene40301:intron 30.0%
ACCTACTTCCAAACTTATTA+TGG - chr3.2:87953729-87953748 None:intergenic 30.0%
ACTATGACAATTTATTCGAC+TGG + chr3.2:87955353-87955372 MS.gene40301:CDS 30.0%
AGATTACACAGATTACAAGT+TGG - chr3.2:87953861-87953880 None:intergenic 30.0%
ATATGAAACGAATTATGGGA+CGG - chr3.2:87953107-87953126 None:intergenic 30.0%
ATGTACTAGTAACCAATCTT+AGG + chr3.2:87955233-87955252 MS.gene40301:intron 30.0%
ATTAAGACATGTACATCATC+AGG - chr3.2:87956049-87956068 None:intergenic 30.0%
ATTCTTCATTTGTGTTTGCT+TGG + chr3.2:87955188-87955207 MS.gene40301:intron 30.0%
ATTGAAAATGTATACCTCAG+TGG - chr3.2:87954421-87954440 None:intergenic 30.0%
ATTTGGATCTCATATGGAAA+AGG + chr3.2:87952503-87952522 MS.gene40301:intron 30.0%
CATGTCTTAGCAATTAATAG+AGG - chr3.2:87956271-87956290 None:intergenic 30.0%
CTAAATGCTAAGAATCATAC+GGG + chr3.2:87956178-87956197 MS.gene40301:CDS 30.0%
CTCTATTAATTGCTAAGACA+TGG + chr3.2:87956269-87956288 MS.gene40301:intron 30.0%
CTCTCTGTATAAGTTTATCA+AGG - chr3.2:87953991-87954010 None:intergenic 30.0%
CTTCTTATGTTCATACAATG+AGG + chr3.2:87955662-87955681 MS.gene40301:intron 30.0%
GAAGATAAAAACAACACAAG+AGG - chr3.2:87955281-87955300 None:intergenic 30.0%
GCAATTAATAGAGGATATAG+AGG - chr3.2:87956262-87956281 None:intergenic 30.0%
TAAACTTATACTTGCTTGCT+AGG + chr3.2:87952272-87952291 MS.gene40301:intron 30.0%
TAAACTTCTTATTACATCGG+GGG - chr3.2:87955305-87955324 None:intergenic 30.0%
TATTAATTGCTAAGACATGG+TGG + chr3.2:87956272-87956291 MS.gene40301:intron 30.0%
TATTAGGAGAAAATCAAGTC+AGG + chr3.2:87953029-87953048 MS.gene40301:CDS 30.0%
TGATCTATTCCTTAGATTAC+CGG - chr3.2:87952041-87952060 None:intergenic 30.0%
TGATGGAGATCATAATATTC+TGG + chr3.2:87952603-87952622 MS.gene40301:CDS 30.0%
TGGTAAATATCTGTCAATCT+TGG - chr3.2:87955893-87955912 None:intergenic 30.0%
TGTACTAGTAACCAATCTTA+GGG + chr3.2:87955234-87955253 MS.gene40301:intron 30.0%
TGTGTGACATTAAAACAATC+TGG - chr3.2:87953388-87953407 None:intergenic 30.0%
TTACCAAAAACTTCTGTAAC+TGG + chr3.2:87953527-87953546 MS.gene40301:intron 30.0%
TTACTGTCAATTGGACATAT+AGG + chr3.2:87954845-87954864 MS.gene40301:intron 30.0%
TTATGTACTTCTTAAGAGGA+AGG + chr3.2:87954192-87954211 MS.gene40301:CDS 30.0%
TTGGAGAAGACTGTATAATT+TGG - chr3.2:87952448-87952467 None:intergenic 30.0%
TTTGATCAAGATCCAGATTA+TGG + chr3.2:87954741-87954760 MS.gene40301:CDS 30.0%
! AAATTTAGGGCTTGACTATA+TGG + chr3.2:87954304-87954323 MS.gene40301:intron 30.0%
! AGCTTGATAACATGGAATTA+GGG + chr3.2:87952205-87952224 MS.gene40301:intron 30.0%
! ATAACTTCCTAATGGGTATT+AGG + chr3.2:87953013-87953032 MS.gene40301:CDS 30.0%
! ATGAATGTAGCTTGATAACA+TGG + chr3.2:87952197-87952216 MS.gene40301:intron 30.0%
! ATTTTCTCCTAATACCCATT+AGG - chr3.2:87953023-87953042 None:intergenic 30.0%
! CATGTCTTAATTTCCTTTTC+AGG + chr3.2:87956058-87956077 MS.gene40301:intron 30.0%
! CTTGTCATATTTTTCCTCTT+TGG - chr3.2:87954373-87954392 None:intergenic 30.0%
! GATCATTGCCTATTTTCTTA+TGG + chr3.2:87953553-87953572 MS.gene40301:intron 30.0%
! TAAAACAATCTGGTTTCATG+TGG - chr3.2:87953378-87953397 None:intergenic 30.0%
! TAGCTTGATAACATGGAATT+AGG + chr3.2:87952204-87952223 MS.gene40301:intron 30.0%
! TGAGATCAACATTTTGTATC+GGG + chr3.2:87952072-87952091 MS.gene40301:intron 30.0%
! TGCTTATAATGGAGTTTAGA+GGG + chr3.2:87953755-87953774 MS.gene40301:intron 30.0%
! TGTATAATTTGTGAATGCTC+CGG + chr3.2:87952019-87952038 MS.gene40301:intron 30.0%
! TTCCTCTTAAGAAGTACATA+AGG - chr3.2:87954193-87954212 None:intergenic 30.0%
! TTGCTTATAATGGAGTTTAG+AGG + chr3.2:87953754-87953773 MS.gene40301:intron 30.0%
! TTTAAGATTGGTCGCAAAAT+CGG + chr3.2:87951761-87951780 MS.gene40301:CDS 30.0%
!! AAGAAGCATTTGGGTATATT+TGG + chr3.2:87952486-87952505 MS.gene40301:intron 30.0%
!! AATAGTCATTGATTCAAGTG+AGG - chr3.2:87955547-87955566 None:intergenic 30.0%
!! ACATTTTCTGCAGTTGATTT+GGG - chr3.2:87956444-87956463 None:intergenic 30.0%
!! CTTTTAAGGATTGCTATTAC+TGG + chr3.2:87954556-87954575 MS.gene40301:intron 30.0%
!!! AGTTTTGTTACAGTAACTTG+AGG - chr3.2:87956097-87956116 None:intergenic 30.0%
AAAAACTAGATTGAGGGTCA+GGG - chr3.2:87954461-87954480 None:intergenic 35.0%
AAAATGTCTCTAAGCCTGAA+AGG + chr3.2:87956457-87956476 MS.gene40301:CDS 35.0%
AAGGAGACAAAAGCAATCAT+CGG + chr3.2:87955408-87955427 MS.gene40301:CDS 35.0%
AATAGAGTACATGCATTCCA+AGG + chr3.2:87952963-87952982 MS.gene40301:CDS 35.0%
AATCCAGCTGCTTGAAATAT+GGG - chr3.2:87956526-87956545 None:intergenic 35.0%
ACATACTGCATACAGTACAT+AGG + chr3.2:87955028-87955047 MS.gene40301:intron 35.0%
AGTCTTTCTTAGTTGAACAG+CGG - chr3.2:87955984-87956003 None:intergenic 35.0%
AGTTTAAACCCTGATCATCA+AGG + chr3.2:87952150-87952169 MS.gene40301:intron 35.0%
ATACCCATTAGGAAGTTATC+TGG - chr3.2:87953012-87953031 None:intergenic 35.0%
ATAGAGTACATGCATTCCAA+GGG + chr3.2:87952964-87952983 MS.gene40301:CDS 35.0%
ATAGTTCCAGGTATTCATGT+AGG - chr3.2:87954516-87954535 None:intergenic 35.0%
ATCGAAAAGTTACCTCTTGT+AGG + chr3.2:87952853-87952872 MS.gene40301:intron 35.0%
ATTGTTTCGTCAATAGTTCC+AGG - chr3.2:87954528-87954547 None:intergenic 35.0%
CAAACCAGATAACTTCCTAA+TGG + chr3.2:87953005-87953024 MS.gene40301:CDS 35.0%
CAAGCAAGCATATTCCTTAT+AGG + chr3.2:87953214-87953233 MS.gene40301:CDS 35.0%
CAAGGATGCCATAAGAAAAT+AGG - chr3.2:87953564-87953583 None:intergenic 35.0%
CAATAGACTCCAAATCATCA+CGG - chr3.2:87954163-87954182 None:intergenic 35.0%
CTCAACAACTATTGTGTACA+AGG + chr3.2:87952340-87952359 MS.gene40301:intron 35.0%
CTCAACTGATTAGGGTTAAA+AGG + chr3.2:87952113-87952132 MS.gene40301:intron 35.0%
CTCATTGCAAAACGGAAAAA+AGG + chr3.2:87955813-87955832 MS.gene40301:intron 35.0%
CTTCAATGATAAAACCTCTC+AGG - chr3.2:87954610-87954629 None:intergenic 35.0%
GAACGAATTCTGTTCAATTG+TGG + chr3.2:87955694-87955713 MS.gene40301:intron 35.0%
GAGATGAACGATAAAGAGAT+GGG - chr3.2:87951973-87951992 None:intergenic 35.0%
GGAGATGACCATAATAAGTT+TGG + chr3.2:87953718-87953737 MS.gene40301:intron 35.0%
GGGTATATTTGGATCTCATA+TGG + chr3.2:87952497-87952516 MS.gene40301:intron 35.0%
GTCCTTATGTACTTCTTAAG+AGG + chr3.2:87954188-87954207 MS.gene40301:CDS 35.0%
GTCTCTATGTAAAAATCCCT+TGG - chr3.2:87952983-87953002 None:intergenic 35.0%
GTGAGGAAGAGAATAAAATC+AGG - chr3.2:87955530-87955549 None:intergenic 35.0%
GTGCTTAAGTAGAGATATTC+TGG - chr3.2:87955010-87955029 None:intergenic 35.0%
TAAAAACTAGATTGAGGGTC+AGG - chr3.2:87954462-87954481 None:intergenic 35.0%
TACAAGCTTAGCTGTAAAGA+AGG - chr3.2:87954091-87954110 None:intergenic 35.0%
TATGAAACGAATTATGGGAC+GGG - chr3.2:87953106-87953125 None:intergenic 35.0%
TCATGTAGGTCAAAGTATGA+GGG - chr3.2:87954502-87954521 None:intergenic 35.0%
TGATGATCAGGGTTTAAACT+CGG - chr3.2:87952150-87952169 None:intergenic 35.0%
TGCAATACTCACTTAGGAAT+CGG + chr3.2:87954047-87954066 MS.gene40301:CDS 35.0%
TGCATTTACTGGAATGCATA+TGG + chr3.2:87955475-87955494 MS.gene40301:intron 35.0%
TGGATCTTGATCAAATGTCA+AGG - chr3.2:87954736-87954755 None:intergenic 35.0%
TTAGGGTTAAAAGGAGTTTG+AGG + chr3.2:87952122-87952141 MS.gene40301:intron 35.0%
TTATAACTGCACAGTAGTAC+TGG - chr3.2:87953594-87953613 None:intergenic 35.0%
TTCATGTAGGTCAAAGTATG+AGG - chr3.2:87954503-87954522 None:intergenic 35.0%
TTCTTTAGATTGGATGGCTT+AGG - chr3.2:87956157-87956176 None:intergenic 35.0%
TTTGGCTGAATTTAATGAGC+AGG + chr3.2:87955325-87955344 MS.gene40301:intron 35.0%
! ACACCAGTTACAGAAGTTTT+TGG - chr3.2:87953533-87953552 None:intergenic 35.0%
! ACATTTTGTATCGGGTTTGA+TGG + chr3.2:87952080-87952099 MS.gene40301:intron 35.0%
! AGGAATATGCTTGCTTGTTT+TGG - chr3.2:87953211-87953230 None:intergenic 35.0%
! ATTCTGGTTATGGATCTTCT+GGG + chr3.2:87952619-87952638 MS.gene40301:CDS 35.0%
! CATTTTGTATCGGGTTTGAT+GGG + chr3.2:87952081-87952100 MS.gene40301:intron 35.0%
! CTTATAATGGAGTTTAGAGG+GGG + chr3.2:87953757-87953776 MS.gene40301:intron 35.0%
! CTTCTGAGAACAAGGAATAT+GGG - chr3.2:87954661-87954680 None:intergenic 35.0%
! GACATTTTCTGCAGTTGATT+TGG - chr3.2:87956445-87956464 None:intergenic 35.0%
! GCTTATAATGGAGTTTAGAG+GGG + chr3.2:87953756-87953775 MS.gene40301:intron 35.0%
! GTCAGGGGTTAATCATTTTA+TGG - chr3.2:87954445-87954464 None:intergenic 35.0%
! TATTCTGGTTATGGATCTTC+TGG + chr3.2:87952618-87952637 MS.gene40301:CDS 35.0%
! TGGAATTAGGGATGTGTTTT+TGG + chr3.2:87952217-87952236 MS.gene40301:intron 35.0%
! TTCTGATTCGTCTTACACTT+CGG + chr3.2:87952542-87952561 MS.gene40301:intron 35.0%
!! CGCTTTAAGAATCCATAATC+TGG - chr3.2:87954756-87954775 None:intergenic 35.0%
!! GGAATATGCTTGCTTGTTTT+GGG - chr3.2:87953210-87953229 None:intergenic 35.0%
!! TTTTGCATTTTAGCCTTCCT+TGG + chr3.2:87954328-87954347 MS.gene40301:intron 35.0%
!!! GAATATGCTTGCTTGTTTTG+GGG - chr3.2:87953209-87953228 None:intergenic 35.0%
!!! TGTTTTAGCCTGTTGAATGT+AGG + chr3.2:87954914-87954933 MS.gene40301:intron 35.0%
AAAACTAGATTGAGGGTCAG+GGG - chr3.2:87954460-87954479 None:intergenic 40.0%
AAAATCGGAAGCGGTTCATT+TGG + chr3.2:87951776-87951795 MS.gene40301:intron 40.0%
AAAGTAAGACGCAAACTCCA+CGG - chr3.2:87954700-87954719 None:intergenic 40.0%
AATCAGAACTCAGAAGAGTC+CGG - chr3.2:87953899-87953918 None:intergenic 40.0%
AGAAGAAATCCAATGGCAGT+CGG - chr3.2:87956231-87956250 None:intergenic 40.0%
AGCTAGTACGAATCAGCATT+AGG - chr3.2:87952366-87952385 None:intergenic 40.0%
ATGAATCAGTGGTTACCATC+TGG - chr3.2:87952717-87952736 None:intergenic 40.0%
ATTCCAACTATGAGATGGTG+CGG + chr3.2:87952577-87952596 MS.gene40301:CDS 40.0%
CAAACCTAGGTCGTGTATTT+GGG + chr3.2:87956493-87956512 MS.gene40301:CDS 40.0%
CAATGATAAAACCTCTCAGG+AGG - chr3.2:87954607-87954626 None:intergenic 40.0%
CACATTTGGACGATCAAGAT+TGG - chr3.2:87956125-87956144 None:intergenic 40.0%
CGAGATGAACGATAAAGAGA+TGG - chr3.2:87951974-87951993 None:intergenic 40.0%
CTTTGACCTACATGAATACC+TGG + chr3.2:87954507-87954526 MS.gene40301:intron 40.0%
GAAGAAATTCGCCGTAAAGA+AGG - chr3.2:87956549-87956568 None:intergenic 40.0%
GAAGTTATCAACTTCCACTG+AGG + chr3.2:87954404-87954423 MS.gene40301:CDS 40.0%
GAATCCAGCTGCTTGAAATA+TGG - chr3.2:87956527-87956546 None:intergenic 40.0%
GCAAGTTGCAATACTCACTT+AGG + chr3.2:87954041-87954060 MS.gene40301:CDS 40.0%
GCAATCCAGATATGAATCAG+TGG - chr3.2:87952728-87952747 None:intergenic 40.0%
GCATCCACAACTATTGTATG+AGG + chr3.2:87952422-87952441 MS.gene40301:CDS 40.0%
GTGGTATTCCAACTATGAGA+TGG + chr3.2:87952572-87952591 MS.gene40301:CDS 40.0%
GTGGTTGTGGAAAAACATAC+AGG + chr3.2:87955629-87955648 MS.gene40301:CDS 40.0%
TAATGCCTCCTACATTCAAC+AGG - chr3.2:87954925-87954944 None:intergenic 40.0%
TAATTTCTTCCGACTGCCAT+TGG + chr3.2:87956219-87956238 MS.gene40301:intron 40.0%
TACTCTATTCTCGAAAGCTG+TGG - chr3.2:87952952-87952971 None:intergenic 40.0%
TATTCCCAAATACACGACCT+AGG - chr3.2:87956500-87956519 None:intergenic 40.0%
TCAAACCTAGGTCGTGTATT+TGG + chr3.2:87956492-87956511 MS.gene40301:CDS 40.0%
TGTAGGAGAAGAAGAGAACA+AGG + chr3.2:87952400-87952419 MS.gene40301:intron 40.0%
TTCACTTGGAAGTTGGAACT+TGG + chr3.2:87955940-87955959 MS.gene40301:intron 40.0%
TTGGCCTCATACAATAGTTG+TGG - chr3.2:87952429-87952448 None:intergenic 40.0%
TTGGGTAGCTCAACTGATTA+GGG + chr3.2:87952105-87952124 MS.gene40301:intron 40.0%
TTGTTCTCAAGACCACATGT+AGG - chr3.2:87955072-87955091 None:intergenic 40.0%
TTTAGCCTGTTGAATGTAGG+AGG + chr3.2:87954917-87954936 MS.gene40301:intron 40.0%
TTTGATGTTAGCAGACCAGA+TGG + chr3.2:87952699-87952718 MS.gene40301:CDS 40.0%
TTTGGGTAGCTCAACTGATT+AGG + chr3.2:87952104-87952123 MS.gene40301:intron 40.0%
! AGTAGCTACCTTGATGATCA+GGG - chr3.2:87952161-87952180 None:intergenic 40.0%
! ATGGTCTAGCTTGCATTTAC+TGG + chr3.2:87955464-87955483 MS.gene40301:intron 40.0%
! CGTCTTACACTTCGGATTTT+AGG + chr3.2:87952550-87952569 MS.gene40301:intron 40.0%
! CGTGATGATTTGGAGTCTAT+TGG + chr3.2:87954161-87954180 MS.gene40301:CDS 40.0%
! CTTACACTTCGGATTTTAGG+TGG + chr3.2:87952553-87952572 MS.gene40301:intron 40.0%
! GCTTCTGAGAACAAGGAATA+TGG - chr3.2:87954662-87954681 None:intergenic 40.0%
! GTATGTTTTTCCACAACCAC+TGG - chr3.2:87955629-87955648 None:intergenic 40.0%
! GTTGCGTCTGCTGATATTTT+AGG - chr3.2:87955384-87955403 None:intergenic 40.0%
! GTTGGCGGAAAGTTTAAGAT+TGG + chr3.2:87951749-87951768 MS.gene40301:CDS 40.0%
! TAGGGTTTCAGAGTTGTTTC+TGG + chr3.2:87955252-87955271 MS.gene40301:intron 40.0%
! TAGTAGCTACCTTGATGATC+AGG - chr3.2:87952162-87952181 None:intergenic 40.0%
! TCGGACTAGGAAAAAGATAC+CGG + chr3.2:87953181-87953200 MS.gene40301:CDS 40.0%
! TTTGAGATGAGACCTACATG+TGG + chr3.2:87955057-87955076 MS.gene40301:intron 40.0%
!! AGTAGTACTGGTACACATCA+AGG - chr3.2:87953582-87953601 None:intergenic 40.0%
!! ATAGGAGCATTTCCTACAAG+AGG - chr3.2:87952868-87952887 None:intergenic 40.0%
!! CAACTCTGAAACCCTAAGAT+TGG - chr3.2:87955248-87955267 None:intergenic 40.0%
!! CGTCTGCTGATATTTTAGGA+TGG - chr3.2:87955380-87955399 None:intergenic 40.0%
!! GGTAACCACTGATTCATATC+TGG + chr3.2:87952720-87952739 MS.gene40301:intron 40.0%
!!! AGAGGGGGTATTTTGTGAAA+TGG + chr3.2:87953772-87953791 MS.gene40301:intron 40.0%
AACTCAGAAGAGTCCGGAAA+AGG - chr3.2:87953893-87953912 None:intergenic 45.0%
AAGTAAGACGCAAACTCCAC+GGG - chr3.2:87954699-87954718 None:intergenic 45.0%
ACTAGGAACAGCACTAGGTA+CGG - chr3.2:87955585-87955604 None:intergenic 45.0%
ACTCCCATATTTCAAGCAGC+TGG + chr3.2:87956520-87956539 MS.gene40301:CDS 45.0%
AGGAAATGCTCCTATCCACA+GGG + chr3.2:87952873-87952892 MS.gene40301:intron 45.0%
AGTATGAGGGCGAGAAGAAA+AGG - chr3.2:87954489-87954508 None:intergenic 45.0%
ATAAAACCTCTCAGGAGGAG+GGG - chr3.2:87954602-87954621 None:intergenic 45.0%
ATTGGTCGCAAAATCGGAAG+CGG + chr3.2:87951767-87951786 MS.gene40301:CDS 45.0%
CAATGATCCGTCCACTTCAT+CGG + chr3.2:87956413-87956432 MS.gene40301:CDS 45.0%
CATTGAAAGTCCCTGTGGAT+AGG - chr3.2:87952886-87952905 None:intergenic 45.0%
GATAAAACCTCTCAGGAGGA+GGG - chr3.2:87954603-87954622 None:intergenic 45.0%
GCAGCTGGATTCCTTCTTTA+CGG + chr3.2:87956535-87956554 MS.gene40301:CDS 45.0%
GCTTTCATTGAAAGTCCCTG+TGG - chr3.2:87952891-87952910 None:intergenic 45.0%
GTGAATGCTCCGGTAATCTA+AGG + chr3.2:87952029-87952048 MS.gene40301:intron 45.0%
TAGGAAATGCTCCTATCCAC+AGG + chr3.2:87952872-87952891 MS.gene40301:intron 45.0%
TCTGAAAGCTGTCACCAAAG+AGG + chr3.2:87954356-87954375 MS.gene40301:CDS 45.0%
TGATAAAACCTCTCAGGAGG+AGG - chr3.2:87954604-87954623 None:intergenic 45.0%
TTAGGCTGCACATGCACATT+TGG - chr3.2:87956139-87956158 None:intergenic 45.0%
! ACCTAGGTTTGAAGTTCCTG+TGG - chr3.2:87956484-87956503 None:intergenic 45.0%
! AGGACCTTTTTGTCTTCTGC+GGG + chr3.2:87952653-87952672 MS.gene40301:CDS 45.0%
! CCTAGGTTTGAAGTTCCTGT+GGG - chr3.2:87956483-87956502 None:intergenic 45.0%
! CGGACTAGGAAAAAGATACC+GGG + chr3.2:87953182-87953201 MS.gene40301:CDS 45.0%
! GAGGACCTTTTTGTCTTCTG+CGG + chr3.2:87952652-87952671 MS.gene40301:CDS 45.0%
! GATGGACTCAAAGTGTCTAC+TGG + chr3.2:87953635-87953654 MS.gene40301:intron 45.0%
! GCTTTTTGCAGCCTCTGATA+TGG + chr3.2:87951895-87951914 MS.gene40301:intron 45.0%
! TCGCAAAGCTTCTGAGAACA+AGG - chr3.2:87954669-87954688 None:intergenic 45.0%
!! CATTTTAGCCTTCCTTGGCA+GGG + chr3.2:87954333-87954352 MS.gene40301:intron 45.0%
!! GTATCGGGTTTGATGGGTTT+GGG + chr3.2:87952087-87952106 MS.gene40301:intron 45.0%
!! TGTATCGGGTTTGATGGGTT+TGG + chr3.2:87952086-87952105 MS.gene40301:intron 45.0%
ACAGCACTAGGAACAGCACT+AGG - chr3.2:87955590-87955609 None:intergenic 50.0%
ATCAGCAGACGCAACAGACA+AGG + chr3.2:87955389-87955408 MS.gene40301:CDS 50.0%
CAGTCTACAACCAGTGGTTG+TGG + chr3.2:87955616-87955635 MS.gene40301:CDS 50.0%
CCCACAGGAACTTCAAACCT+AGG + chr3.2:87956480-87956499 MS.gene40301:CDS 50.0%
CGTGAGTTGTTCACTCGTGA+AGG + chr3.2:87954783-87954802 MS.gene40301:CDS 50.0%
CTCTGATATGGACACCTCTG+AGG + chr3.2:87951907-87951926 MS.gene40301:CDS 50.0%
GCAAAGTCGCCGTGATGATT+TGG + chr3.2:87954151-87954170 MS.gene40301:CDS 50.0%
GCTTTGCGAATCATATCCCG+TGG + chr3.2:87954680-87954699 MS.gene40301:CDS 50.0%
GTACCGCACCATCTCATAGT+TGG - chr3.2:87952583-87952602 None:intergenic 50.0%
TGAGGTCGTTGCCGTCAAAA+TGG + chr3.2:87951925-87951944 MS.gene40301:CDS 50.0%
TGCTCCCGCAGAAGACAAAA+AGG - chr3.2:87952660-87952679 None:intergenic 50.0%
TTTGGGCAAAGCCGATGAAG+TGG - chr3.2:87956427-87956446 None:intergenic 50.0%
! ACCACTGGTTGTAGACTGCT+AGG - chr3.2:87955614-87955633 None:intergenic 50.0%
! ATGAGATGGTGCGGTACTGA+TGG + chr3.2:87952586-87952605 MS.gene40301:CDS 50.0%
!! CTCAGAGGTGTCCATATCAG+AGG - chr3.2:87951909-87951928 None:intergenic 50.0%
!! GCATTTTAGCCTTCCTTGGC+AGG + chr3.2:87954332-87954351 MS.gene40301:intron 50.0%
ACAGCTTTCAGACCCTGCCA+AGG - chr3.2:87954348-87954367 None:intergenic 55.0%
AGACTGCTAGGCACAGCACT+AGG - chr3.2:87955602-87955621 None:intergenic 55.0%
CTTTCAGACCCTGCCAAGGA+AGG - chr3.2:87954344-87954363 None:intergenic 55.0%
GAAGTTCCTGTGGGCCTTTC+AGG - chr3.2:87956474-87956493 None:intergenic 55.0%
GCACTAGGTACGGCATCTGA+AGG - chr3.2:87955575-87955594 None:intergenic 55.0%
GCCTAGCAGTCTACAACCAG+TGG + chr3.2:87955610-87955629 MS.gene40301:CDS 55.0%
GGCAAAGCCGATGAAGTGGA+CGG - chr3.2:87956423-87956442 None:intergenic 55.0%
TCTAAGCCTGAAAGGCCCAC+AGG + chr3.2:87956465-87956484 MS.gene40301:CDS 55.0%
TTTGACGGCAACGACCTCAG+AGG - chr3.2:87951924-87951943 None:intergenic 55.0%
!! GGATCTTCTGGGACGTAGTC+TGG + chr3.2:87952630-87952649 MS.gene40301:CDS 55.0%
!! TCTTCTGGGACGTAGTCTGG+AGG + chr3.2:87952633-87952652 MS.gene40301:CDS 55.0%
!!! GCTTGCTTGTTTTGGGGTCC+CGG - chr3.2:87953203-87953222 None:intergenic 55.0%
AGTTAGCCCCTCCTCCTGAG+AGG + chr3.2:87954593-87954612 MS.gene40301:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 87951737 87956578 87951737 ID=MS.gene40301
chr3.2 mRNA 87951737 87956578 87951737 ID=MS.gene40301.t1;Parent=MS.gene40301
chr3.2 exon 87951737 87951788 87951737 ID=MS.gene40301.t1.exon1;Parent=MS.gene40301.t1
chr3.2 CDS 87951737 87951788 87951737 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87951906 87951946 87951906 ID=MS.gene40301.t1.exon2;Parent=MS.gene40301.t1
chr3.2 CDS 87951906 87951946 87951906 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87952405 87952474 87952405 ID=MS.gene40301.t1.exon3;Parent=MS.gene40301.t1
chr3.2 CDS 87952405 87952474 87952405 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87952572 87952720 87952572 ID=MS.gene40301.t1.exon4;Parent=MS.gene40301.t1
chr3.2 CDS 87952572 87952720 87952572 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87952955 87953050 87952955 ID=MS.gene40301.t1.exon5;Parent=MS.gene40301.t1
chr3.2 CDS 87952955 87953050 87952955 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87953165 87953235 87953165 ID=MS.gene40301.t1.exon6;Parent=MS.gene40301.t1
chr3.2 CDS 87953165 87953235 87953165 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87954007 87954068 87954007 ID=MS.gene40301.t1.exon7;Parent=MS.gene40301.t1
chr3.2 CDS 87954007 87954068 87954007 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87954150 87954213 87954150 ID=MS.gene40301.t1.exon8;Parent=MS.gene40301.t1
chr3.2 CDS 87954150 87954213 87954150 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87954341 87954425 87954341 ID=MS.gene40301.t1.exon9;Parent=MS.gene40301.t1
chr3.2 CDS 87954341 87954425 87954341 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87954678 87954804 87954678 ID=MS.gene40301.t1.exon10;Parent=MS.gene40301.t1
chr3.2 CDS 87954678 87954804 87954678 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87955347 87955429 87955347 ID=MS.gene40301.t1.exon11;Parent=MS.gene40301.t1
chr3.2 CDS 87955347 87955429 87955347 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87955572 87955650 87955572 ID=MS.gene40301.t1.exon12;Parent=MS.gene40301.t1
chr3.2 CDS 87955572 87955650 87955572 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87956080 87956207 87956080 ID=MS.gene40301.t1.exon13;Parent=MS.gene40301.t1
chr3.2 CDS 87956080 87956207 87956080 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
chr3.2 exon 87956405 87956578 87956405 ID=MS.gene40301.t1.exon14;Parent=MS.gene40301.t1
chr3.2 CDS 87956405 87956578 87956405 ID=cds.MS.gene40301.t1;Parent=MS.gene40301.t1
Gene Sequence

>MS.gene40301

ATGGAGTGGGTCGTTGGCGGAAAGTTTAAGATTGGTCGCAAAATCGGAAGCGGTTCATTTGGTGAAATTTATATAGGTAATTTATTATTATTCATTTCTATTTCATTTATTTGTATTGTTCTATTCAACATTCATATGCGGATGCTGATTATCTTGTTGCTTTTTGCAGCCTCTGATATGGACACCTCTGAGGTCGTTGCCGTCAAAATGGTTTGTTTCTTTCTCTTTCATTTCCCATCTCTTTATCGTTCATCTCGTTAATTTTGCTTAAAGTTTTTTTTATGTATAATTTGTGAATGCTCCGGTAATCTAAGGAATAGATCATTTTATCCTAATGAGATCAACATTTTGTATCGGGTTTGATGGGTTTGGGTAGCTCAACTGATTAGGGTTAAAAGGAGTTTGAGGATCCGAGTTTAAACCCTGATCATCAAGGTAGCTACTAATTATTAAGAAATGAATGAATGTAGCTTGATAACATGGAATTAGGGATGTGTTTTTGGATATGCATAAAGTGAATTAATCACTACAAGTATAAACTTATACTTGCTTGCTAGGTGTAAGCTATGACCTTTATTTTTTACACACTTTCATATTCAATTGCTCAACAACTATTGTGTACAAGGCCTAATGCTGATTCGTACTAGCTACATTTCTTTATTTTGTAGGAGAAGAAGAGAACAAGGCATCCACAACTATTGTATGAGGCCAAATTATACAGTCTTCTCCAAGGAGAAAGTAAGTTATAAAAGAAGCATTTGGGTATATTTGGATCTCATATGGAAAAGGCTATGTTACTTGTTTTTTCTGATTCGTCTTACACTTCGGATTTTAGGTGGTATTCCAACTATGAGATGGTGCGGTACTGATGGAGATCATAATATTCTGGTTATGGATCTTCTGGGACGTAGTCTGGAGGACCTTTTTGTCTTCTGCGGGAGCAAGTTTACTTTAAAAACAGTTTTGATGTTAGCAGACCAGATGGTAACCACTGATTCATATCTGGATTGCTTGCTTTATTTTTCAATTGGCATCATTAGTTCCTTGATGATATTAAATATGGCTTTTGGAAATAACTATCATGTTTGTTGCCTATCAATATAGTAGCAGTTTTATATCGAAAAGTTACCTCTTGTAGGAAATGCTCCTATCCACAGGGACTTTCAATGAAAGCACATTAATGTCAGTTTATTTCTGCTTTATTGTACTTGACCACAGCTTTCGAGAATAGAGTACATGCATTCCAAGGGATTTTTACATAGAGACATCAAACCAGATAACTTCCTAATGGGTATTAGGAGAAAATCAAGTCAGGTAAAATCATCTAAATTCATTATCTTCACTGGCTAATTATGTTGATAATTTTCCCGTCCCATAATTCGTTTCATATGTCTTACATTTTCTTTCTGCAATTTGTTACATTTATAGGTTTATATTATTGATTTCGGACTAGGAAAAAGATACCGGGACCCCAAAACAAGCAAGCATATTCCTTATAGGTATATTTTGTTGTTTAATTTTAATTATATTTCTAATCTTTTATTATGGATCATGTTTTTACATGTTATAAGGTTTTCTTGTGTCCTAAAAATACTTGATTTGTTTACTTTTCTATTTACAAAAGTTCTAGAGGTTTGACCACATGAAACCAGATTGTTTTAATGTCACACATGAAGTAAAAAAAAAAAAATATATGAGAAGATAAATTGAAAGTTGATATTAATTATTCTTCATTGGATAACAGTTAATAAAGGTATTCAATTAAGTTTTCTATATTTCAAATCTTATAATTACCAAAAACTTCTGTAACTGGTGTGATCATTGCCTATTTTCTTATGGCATCCTTGATGTGTACCAGTACTACTGTGCAGTTATAAGCAAAAAAAATGTCTAAATTTGATGGACTCAAAGTGTCTACTGGTGTGATCATTTAATGTTACTATTACAAAAACACCCTTACGTTAATACTTTAATGTTGTGAGGAGATGACCATAATAAGTTTGGAAGTAGGTATTTTTTGCTTATAATGGAGTTTAGAGGGGGTATTTTGTGAAATGGTCTCTCATTTTTTTTTTTTTTTGTAAATTAAATGTACATTGCTGTTTATCAATAGAGAGTCTTCCAACTTGTAATCTGTGTAATCTCAAATAATTCCTTTTCCGGACTCTTCTGAGTTCTGATTGTTTCATTCTCACTGCTACTTGTGATTTGCTAGTTTAACTAGTCAAGTTAATGGTCCCTAATGTTTTGACCTTGATAAACTTATACAGAGAGAATAAAATTTTAACAGGGACGGCACGATATGCAAGTTGCAATACTCACTTAGGAATCGGTACGTAGAAATAACTTCTCCTTCTTTACAGCTAAGCTTGTAACCCACAAATTTCATTCTATTTTGGTTTAATTTATTCAGAGCAAAGTCGCCGTGATGATTTGGAGTCTATTGGCTATGTCCTTATGTACTTCTTAAGAGGAAGGTATGTTTCTTCCCATTCATTGTAATTTTCTTACATTTTGAATTTTAAAAAATGGTGCATATGAGTATCAATTGCACATTCTTTTTAGGTAAATTTAGGGCTTGACTATATGGTTTTTGCATTTTAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAGAGGAAAAATATGACAAGATTCGTGAGAAGAAGTTATCAACTTCCACTGAGGTATACATTTTCAATTCCATAAAATGATTAACCCCTGACCCTCAATCTAGTTTTTAATTTCCTTTTCTTCTCGCCCTCATACTTTGACCTACATGAATACCTGGAACTATTGACGAAACAATATTAAGAGCTTTTAAGGATTGCTATTACTGGATTTATCAAATTTTAGTTAGCCCCTCCTCCTGAGAGGTTTTATCATTGAAGTGTTTTTGTTACTCAGAAGTTTAATGAACCCATATTCCTTGTTCTCAGAAGCTTTGCGAATCATATCCCGTGGAGTTTGCGTCTTACTTTCATTATTGTCGCTCCTTGACATTTGATCAAGATCCAGATTATGGATTCTTAAAGCGTCTGTTTCGTGAGTTGTTCACTCGTGAAGGTATTGACTGCTTTTTTATCTTATACTTGATTTTAAGTAATTACTGTCAATTGGACATATAGGATATATGACATTGTTTGATGATATGATAATTTGCTTATTAGTTGGTTGTTTTAGCCTGTTGAATGTAGGAGGCATTATAAATGACTTCCACTAAGTATTTAACCTTTCTTCTTTCTCCTTTAGTTATGCAAATTTTGTGCCAGAATATCTCTACTTAAGCACATACTGCATACAGTACATAGGTATACGTTTGAGATGAGACCTACATGTGGTCTTGAGAACAAAGCCAACTATCTAACATTTTATGATTTTATTGTTTTTCATCCATTACTCTATATCCAAAAATTCATGTTTTGGAAATTTTATGAATTAGTTCATTAATTCTTCATTTGTGTTTGCTTGGAAATAAATGATTTAGCTGTATCATGTACTAGTAACCAATCTTAGGGTTTCAGAGTTGTTTCTGGTAGCCTCTTGTGTTGTTTTTATCTTCTCCCCCGATGTAATAAGAAGTTTATTTGGCTGAATTTAATGAGCAGGATATGACTATGACAATTTATTCGACTGGACCATCCTAAAATATCAGCAGACGCAACAGACAAGGAGACAAAAGCAATCATCGGTTAGTATTTTATTTTGAACCTTTAAACATTTTTATGGTCTAGCTTGCATTTACTGGAATGCATATGGATTGTCTGATAGCCCGATTATTAAACTTTCCTGATTTTATTCTCTTCCTCACTTGAATCAATGACTATTTGCAGCCTTCAGATGCCGTACCTAGTGCTGTTCCTAGTGCTGTGCCTAGCAGTCTACAACCAGTGGTTGTGGAAAAACATACAGGTAACTTCAGTCTTCTTATGTTCATACAATGAGGTTAAAACTTGAACGAATTCTGTTCAATTGTGGGAGATTTTTCCTAGATAATGTATATTGAAGTGATTTGCTAGATGAGATTTTTATTTTCCAGTAGAATGAGTTAGAATTTAAAGTTACATTTTAATGCTCATTGCAAAACGGAAAAAAGGCAATAGTTTCTATCTTAATATAAGCTTCTGATGTACAAAGAATTAAGATAGTTGCCAAGATTGACAGATATTTACCAACAAATTCCTTGTTATTATTATTATTTTTCACTTGGAAGTTGGAACTTGGAAGTTTTGCTTTGCTGTGCCGCTGTTCAACTAAGAAAGACTAAGTTTGCAGTATAGTTGATTAATGCTGTCTACAGATTACATCCTGATGATGTACATGTCTTAATTTCCTTTTCAGGAATCAATAATTCACCTCAAGTTACTGTAACAAAACTGCTAACCAATCTTGATCGTCCAAATGTGCATGTGCAGCCTAAGCCATCCAATCTAAAGAATCTAAATGCTAAGAATCATACGGGAAAACATGTAAGTCACAGTAATTTCTTCCGACTGCCATTGGATTTCTTCTTAATTTTACCTCTATATCCTCTATTAATTGCTAAGACATGGTGGCGTCACTTCTGTCGTCATGTTTGTGCTGTTAGTTCAATCACAAAGATATTTTGTTTTGATTTTTTTTACTTGGCTGAAGAAATTCAACTGATTGAGATAAATTTGTGCAGAATGTGAACAATGATCCGTCCACTTCATCGGCTTTGCCCAAATCAACTGCAGAAAATGTCTCTAAGCCTGAAAGGCCCACAGGAACTTCAAACCTAGGTCGTGTATTTGGGAATAACTCCCATATTTCAAGCAGCTGGATTCCTTCTTTACGGCGAATTTCTTCTACCAAATAG
Protein sequence

>MS.gene40301.t1

MEWVVGGKFKIGRKIGSASDMDTSEVVAVKMEKKRTRHPQLLYEAKLYSLLQGESGIPTMRWCGTDGDHNILVMDLLGRSLEDLFVFCGSKFTLKTVLMLADQMLSRIEYMHSKGFLHRDIKPDNFLMGIRRKSSQVYIIDFGLGKRYRDPKTSKHIPYRENKILTGTARYASCNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLKAVTKEEKYDKIREKKLSTSTEKLCESYPVEFASYFHYCRSLTFDQDPDYGFLKRLFRELFTREGYDYDNLFDWTILKYQQTQQTRRQKQSSPSDAVPSAVPSAVPSSLQPVVVEKHTGINNSPQVTVTKLLTNLDRPNVHVQPKPSNLKNLNAKNHTGKHNVNNDPSTSSALPKSTAENVSKPERPTGTSNLGRVFGNNSHISSSWIPSLRRISSTK