AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene40623

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40623.t1 MTR_1g054265 94.675 169 9 0 1 169 1 169 2.65e-115 324
MS.gene40623.t1 MTR_1g063160 77.654 179 40 0 1 179 1 179 5.66e-100 286
MS.gene40623.t1 MTR_1g047550 77.654 179 40 0 1 179 1 179 1.73e-99 285
MS.gene40623.t1 MTR_4g131030 71.277 188 37 1 1 171 1 188 1.92e-91 266
MS.gene40623.t1 MTR_8g079502 77.844 167 37 0 1 167 1 167 4.37e-90 261
MS.gene40623.t1 MTR_8g051580 57.865 178 75 0 1 178 1 178 2.51e-70 211
MS.gene40623.t1 MTR_8g046350 51.786 168 75 2 1 168 1 162 2.32e-53 167
MS.gene40623.t1 MTR_4g094632 39.634 164 87 2 1 164 1 152 7.20e-29 105
MS.gene40623.t1 MTR_3g080940 41.538 130 74 1 1 128 8 137 2.56e-28 105
MS.gene40623.t1 MTR_3g052870 41.304 138 78 2 2 136 9 146 2.76e-27 102
MS.gene40623.t1 MTR_1g106070 47.619 105 45 2 2 100 9 109 2.29e-26 99.4
MS.gene40623.t1 MTR_1g105920 48.515 101 50 1 2 100 9 109 5.30e-26 99.8
MS.gene40623.t1 MTR_3g052920 46.535 101 52 2 2 100 9 109 1.35e-25 98.6
MS.gene40623.t1 MTR_1g012570 40.625 128 73 2 2 127 9 135 4.33e-25 97.4
MS.gene40623.t1 MTR_5g045560 52.500 80 38 0 1 80 8 87 5.29e-25 97.1
MS.gene40623.t1 MTR_1g105910 47.525 101 51 1 2 100 9 109 6.07e-25 97.1
MS.gene40623.t1 MTR_1g108510 44.554 101 54 1 2 100 9 109 2.08e-24 95.5
MS.gene40623.t1 MTR_1g077360 44.554 101 54 1 2 100 9 109 4.13e-24 94.7
MS.gene40623.t1 MTR_3g030770 44.554 101 54 1 2 100 9 109 4.61e-24 94.7
MS.gene40623.t1 MTR_0121s0100 44.554 101 54 1 2 100 9 109 4.83e-24 92.0
MS.gene40623.t1 MTR_2g030740 45.545 101 53 1 2 100 9 109 8.56e-24 94.0
MS.gene40623.t1 MTR_8g043650 45.545 101 53 1 2 100 9 109 2.51e-23 92.8
MS.gene40623.t1 MTR_2g093190 44.554 101 54 1 2 100 9 109 2.62e-23 92.4
MS.gene40623.t1 MTR_1g108580 42.574 101 56 1 2 100 9 109 4.04e-23 92.0
MS.gene40623.t1 MTR_4g094638 55.714 70 31 0 1 70 1 70 9.21e-23 89.7
MS.gene40623.t1 MTR_1g075600 51.899 79 38 0 2 80 9 87 2.99e-22 90.1
MS.gene40623.t1 MTR_3g030780 41.818 110 62 1 2 109 9 118 3.49e-22 87.0
MS.gene40623.t1 MTR_8g086290 47.126 87 44 1 2 86 12 98 3.64e-22 88.2
MS.gene40623.t1 MTR_0121s0080 42.373 118 63 2 2 117 9 123 3.70e-22 89.7
MS.gene40623.t1 MTR_2g085250 49.367 79 40 0 2 80 9 87 9.63e-22 88.6
MS.gene40623.t1 MTR_5g053390 55.072 69 31 0 2 70 9 77 9.83e-22 88.6
MS.gene40623.t1 MTR_2g085280 49.367 79 40 0 2 80 9 87 1.06e-21 88.6
MS.gene40623.t1 MTR_2g105290 53.521 71 33 0 1 71 11 81 1.30e-21 87.0
MS.gene40623.t1 MTR_5g055100 46.835 79 42 0 2 80 9 87 3.59e-20 84.3
MS.gene40623.t1 MTR_0003s0590 50.725 69 34 0 1 69 1 69 3.12e-19 82.4
MS.gene40623.t1 MTR_1g105905 60.656 61 24 0 18 78 8 68 8.38e-19 80.5
MS.gene40623.t1 MTR_7g062350 56.716 67 29 0 13 79 32 98 1.25e-18 80.5
MS.gene40623.t1 MTR_7g028448 56.140 57 25 0 14 70 24 80 3.08e-18 77.8
MS.gene40623.t1 MTR_4g036915 56.140 57 25 0 14 70 24 80 3.08e-18 77.8
MS.gene40623.t1 MTR_2g009890 52.055 73 35 0 1 73 1 73 1.61e-17 78.2
MS.gene40623.t1 MTR_5g066960 55.000 60 27 0 1 60 1 60 1.76e-17 72.8
MS.gene40623.t1 MTR_3g452380 41.346 104 57 1 1 100 16 119 1.85e-17 77.4
MS.gene40623.t1 MTR_5g066180 47.826 69 36 0 1 69 1 69 2.55e-17 76.6
MS.gene40623.t1 MTR_1g053070 49.275 69 35 0 1 69 1 69 6.02e-17 76.3
MS.gene40623.t1 MTR_8g033220 41.667 96 54 1 1 96 1 94 6.21e-17 75.5
MS.gene40623.t1 MTR_8g033220 41.667 96 54 1 1 96 1 94 7.35e-17 75.5
MS.gene40623.t1 MTR_8g033270 46.667 75 40 0 1 75 1 75 8.10e-17 75.9
MS.gene40623.t1 MTR_3g005530 49.296 71 36 0 1 71 1 71 1.05e-16 75.1
MS.gene40623.t1 MTR_1g101970 44.444 81 45 0 1 81 1 81 1.29e-16 73.9
MS.gene40623.t1 MTR_2g017865 50.704 71 35 0 1 71 16 86 1.47e-16 75.1
MS.gene40623.t1 MTR_7g075870 37.143 105 63 1 1 105 1 102 2.00e-16 73.9
MS.gene40623.t1 MTR_4g127140 52.113 71 34 0 1 71 11 81 3.90e-16 72.8
MS.gene40623.t1 MTR_4g102530 47.826 69 36 0 1 69 1 69 5.18e-16 72.8
MS.gene40623.t1 MTR_8g087860 49.296 71 36 0 1 71 17 87 6.30e-16 73.2
MS.gene40623.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 8.17e-16 72.8
MS.gene40623.t1 MTR_6g464720 35.971 139 79 4 1 134 1 134 8.48e-16 73.2
MS.gene40623.t1 MTR_7g075870 55.172 58 26 0 1 58 1 58 9.00e-16 72.4
MS.gene40623.t1 MTR_5g031000 47.826 69 36 0 1 69 1 69 9.23e-16 72.4
MS.gene40623.t1 MTR_3g067875 50.820 61 29 1 18 77 8 68 1.12e-15 68.6
MS.gene40623.t1 MTR_4g093970 47.692 65 34 0 1 65 27 91 1.96e-15 72.0
MS.gene40623.t1 MTR_5g021270 37.895 95 50 2 1 93 1 88 2.64e-15 71.2
MS.gene40623.t1 MTR_5g021270 37.895 95 50 2 1 93 1 88 2.76e-15 71.2
MS.gene40623.t1 MTR_1g108500 64.583 48 17 0 18 65 113 160 3.60e-15 72.4
MS.gene40623.t1 MTR_2g461710 50.877 57 28 0 1 57 1 57 4.05e-15 66.6
MS.gene40623.t1 MTR_3g113030 38.889 90 40 1 1 75 1 90 4.33e-15 70.9
MS.gene40623.t1 MTR_5g046790 50.000 58 29 0 1 58 1 58 5.40e-15 70.1
MS.gene40623.t1 MTR_1g038300 37.778 90 54 1 1 88 1 90 6.08e-15 70.5
MS.gene40623.t1 MTR_5g046870 52.632 57 27 0 1 57 1 57 6.41e-15 67.8
MS.gene40623.t1 MTR_5g032150 52.632 57 27 0 1 57 1 57 7.82e-15 70.1
MS.gene40623.t1 MTR_5g032520 52.632 57 27 0 1 57 1 57 8.91e-15 70.1
MS.gene40623.t1 MTR_4g109830 42.857 70 39 1 1 69 1 70 1.16e-14 69.7
MS.gene40623.t1 MTR_7g016630 31.579 114 72 2 1 113 1 109 1.32e-14 70.1
MS.gene40623.t1 MTR_4g093030 53.448 58 27 0 1 58 1 58 1.68e-14 67.8
MS.gene40623.t1 MTR_1g029670 40.000 65 39 0 1 65 1 65 1.79e-14 68.2
MS.gene40623.t1 MTR_3g067910 49.206 63 32 0 18 80 6 68 1.80e-14 66.6
MS.gene40623.t1 MTR_4g084740 45.205 73 39 1 1 72 1 73 2.38e-14 70.1
MS.gene40623.t1 MTR_7g016600 52.632 57 27 0 1 57 1 57 2.56e-14 68.9
MS.gene40623.t1 MTR_8g066260 50.000 58 29 0 1 58 1 58 2.78e-14 68.9
MS.gene40623.t1 MTR_3g088615 41.538 65 38 0 1 65 1 65 3.27e-14 67.4
MS.gene40623.t1 MTR_3g102570 35.644 101 64 1 1 100 1 101 4.08e-14 69.3
MS.gene40623.t1 MTR_3g109930 34.146 123 74 2 1 122 1 117 4.67e-14 67.0
MS.gene40623.t1 MTR_3g084980 54.386 57 26 0 1 57 1 57 5.78e-14 68.2
MS.gene40623.t1 MTR_8g097090 52.632 57 27 0 1 57 1 57 7.35e-14 67.8
MS.gene40623.t1 MTR_6g015975 52.632 57 27 0 1 57 1 57 9.79e-14 67.4
MS.gene40623.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 1.05e-13 66.2
MS.gene40623.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 1.18e-13 65.9
MS.gene40623.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 1.25e-13 66.2
MS.gene40623.t1 MTR_4g036050 45.205 73 39 1 1 72 1 73 1.41e-13 65.9
MS.gene40623.t1 MTR_5g041650 50.000 54 27 0 1 54 38 91 2.28e-13 67.4
MS.gene40623.t1 MTR_4g109810 50.877 57 28 0 1 57 1 57 2.36e-13 66.2
MS.gene40623.t1 MTR_7g075850 57.143 49 21 0 1 49 1 49 3.47e-13 65.9
MS.gene40623.t1 MTR_1g041615 65.909 44 15 0 15 58 19 62 4.02e-13 63.5
MS.gene40623.t1 MTR_4g108720 38.158 76 45 1 1 74 1 76 3.13e-12 63.9
MS.gene40623.t1 MTR_8g022970 42.647 68 39 0 3 70 19 86 1.22e-11 60.8
MS.gene40623.t1 MTR_3g067870 50.000 52 26 0 18 69 92 143 2.17e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene40623.t1 AT2G34440 43.860 171 86 4 1 161 1 171 3.92e-37 126
MS.gene40623.t1 AT3G66656 72.464 69 19 0 1 69 1 69 2.98e-32 114
MS.gene40623.t1 AT2G24840 45.161 124 62 4 1 121 62 182 6.86e-28 105
MS.gene40623.t1 AT5G60440 46.154 130 63 3 2 127 7 133 3.42e-26 101
MS.gene40623.t1 AT1G01530 40.288 139 79 2 1 139 6 140 2.11e-21 88.2
MS.gene40623.t1 AT1G65360 40.708 113 64 1 1 113 6 115 1.21e-20 85.5
MS.gene40623.t1 AT4G36590 33.929 168 85 4 2 160 7 157 2.24e-20 85.5
MS.gene40623.t1 AT3G61120 46.835 79 42 0 1 79 1 79 4.87e-20 84.3
MS.gene40623.t1 AT1G47760 56.061 66 28 1 1 65 1 66 4.97e-20 83.2
MS.gene40623.t1 AT4G22950 43.820 89 46 1 1 89 1 85 2.57e-19 80.9
MS.gene40623.t1 AT5G13790 52.174 69 33 0 1 69 1 69 3.56e-19 82.4
MS.gene40623.t1 AT5G13790 52.174 69 33 0 1 69 1 69 3.57e-19 82.4
MS.gene40623.t1 AT2G45660 37.037 108 65 1 1 108 1 105 6.82e-19 79.3
MS.gene40623.t1 AT1G72350 38.462 130 76 2 2 129 43 170 8.50e-19 80.5
MS.gene40623.t1 AT3G57230 50.725 69 34 0 1 69 1 69 8.72e-19 78.6
MS.gene40623.t1 AT4G37940 52.055 73 35 0 1 73 1 73 9.71e-19 80.5
MS.gene40623.t1 AT4G37940 52.055 73 35 0 1 73 1 73 1.25e-18 80.1
MS.gene40623.t1 AT4G37940 52.055 73 35 0 1 73 1 73 1.95e-18 78.6
MS.gene40623.t1 AT4G22950 42.391 92 49 1 1 92 1 88 2.61e-18 79.3
MS.gene40623.t1 AT4G22950 42.391 92 49 1 1 92 1 88 2.61e-18 79.3
MS.gene40623.t1 AT3G57230 50.725 69 34 0 1 69 1 69 3.51e-18 79.3
MS.gene40623.t1 AT3G57230 50.725 69 34 0 1 69 1 69 3.51e-18 79.3
MS.gene40623.t1 AT2G45660 37.037 108 65 1 1 108 1 105 3.95e-18 78.6
MS.gene40623.t1 AT3G57390 49.275 69 35 0 1 69 1 69 8.19e-18 78.2
MS.gene40623.t1 AT4G09960 46.835 79 42 0 1 79 2 80 1.44e-17 77.4
MS.gene40623.t1 AT4G09960 46.835 79 42 0 1 79 1 79 1.45e-17 77.4
MS.gene40623.t1 AT4G09960 46.835 79 42 0 1 79 1 79 1.46e-17 77.4
MS.gene40623.t1 AT3G57390 49.275 69 35 0 1 69 1 69 1.70e-17 77.8
MS.gene40623.t1 AT2G22630 49.275 69 35 0 1 69 1 69 2.18e-17 77.0
MS.gene40623.t1 AT2G22630 49.275 69 35 0 1 69 1 69 2.18e-17 77.0
MS.gene40623.t1 AT4G09960 46.835 79 42 0 1 79 11 89 2.18e-17 77.4
MS.gene40623.t1 AT4G09960 42.268 97 52 1 1 93 96 192 3.26e-17 77.8
MS.gene40623.t1 AT4G09960 46.835 79 42 0 1 79 27 105 3.32e-17 77.0
MS.gene40623.t1 AT4G24540 38.947 95 57 1 1 95 1 94 4.59e-17 75.9
MS.gene40623.t1 AT2G45650 49.275 69 35 0 1 69 1 69 5.09e-17 76.3
MS.gene40623.t1 AT3G04100 47.692 65 34 0 2 66 14 78 5.44e-17 75.5
MS.gene40623.t1 AT2G14210 42.353 85 48 1 1 84 1 85 9.38e-17 75.5
MS.gene40623.t1 AT2G14210 42.353 85 48 1 1 84 1 85 1.08e-16 75.1
MS.gene40623.t1 AT1G28460 31.613 155 91 3 2 141 8 162 1.45e-16 73.9
MS.gene40623.t1 AT1G29962 44.928 69 38 0 2 70 8 76 1.69e-16 73.6
MS.gene40623.t1 AT3G54340 39.560 91 40 1 1 76 1 91 4.25e-16 73.6
MS.gene40623.t1 AT2G42830 38.462 104 60 1 1 100 16 119 4.32e-16 73.9
MS.gene40623.t1 AT2G42830 38.462 104 60 1 1 100 16 119 4.67e-16 73.9
MS.gene40623.t1 AT5G51860 36.190 105 65 1 1 105 1 103 5.96e-16 72.8
MS.gene40623.t1 AT5G51860 36.190 105 65 1 1 105 1 103 6.02e-16 72.8
MS.gene40623.t1 AT5G10140 54.386 57 26 0 1 57 1 57 6.26e-16 72.0
MS.gene40623.t1 AT3G58780 38.462 104 60 1 1 100 16 119 6.36e-16 73.6
MS.gene40623.t1 AT5G51870 45.833 72 39 0 1 72 1 72 6.94e-16 72.0
MS.gene40623.t1 AT3G58780 38.462 104 60 1 1 100 22 125 7.32e-16 73.2
MS.gene40623.t1 AT5G20240 43.038 79 43 1 1 77 1 79 7.44e-16 71.2
MS.gene40623.t1 AT5G51870 45.833 72 39 0 1 72 1 72 8.09e-16 72.4
MS.gene40623.t1 AT2G22540 54.386 57 26 0 1 57 1 57 9.23e-16 72.8
MS.gene40623.t1 AT2G22540 54.386 57 26 0 1 57 1 57 9.23e-16 72.8
MS.gene40623.t1 AT4G11880 55.172 58 26 0 1 58 1 58 9.54e-16 71.6
MS.gene40623.t1 AT4G11880 55.172 58 26 0 1 58 1 58 9.54e-16 71.6
MS.gene40623.t1 AT5G65070 50.000 58 29 0 1 58 1 58 9.74e-16 70.9
MS.gene40623.t1 AT5G10140 53.448 58 27 0 1 58 1 58 1.01e-15 71.6
MS.gene40623.t1 AT5G10140 54.386 57 26 0 1 57 1 57 1.04e-15 71.6
MS.gene40623.t1 AT1G46408 48.684 76 33 2 1 70 1 76 1.16e-15 72.8
MS.gene40623.t1 AT3G58780 38.462 104 60 1 1 100 16 119 1.17e-15 73.2
MS.gene40623.t1 AT5G10140 54.386 57 26 0 1 57 1 57 1.23e-15 71.6
MS.gene40623.t1 AT5G51870 45.833 72 39 0 1 72 1 72 1.26e-15 72.0
MS.gene40623.t1 AT5G51870 45.833 72 39 0 1 72 24 95 1.30e-15 71.6
MS.gene40623.t1 AT5G51870 45.833 72 39 0 1 72 11 82 1.87e-15 72.0
MS.gene40623.t1 AT5G20240 43.038 79 43 1 1 77 1 79 1.89e-15 71.6
MS.gene40623.t1 AT5G65070 50.000 58 29 0 1 58 1 58 2.25e-15 71.2
MS.gene40623.t1 AT4G11880 55.172 58 26 0 1 58 1 58 2.75e-15 71.2
MS.gene40623.t1 AT4G11880 55.172 58 26 0 1 58 1 58 2.75e-15 71.2
MS.gene40623.t1 AT4G18960 38.835 103 59 1 2 100 18 120 2.92e-15 71.6
MS.gene40623.t1 AT3G30260 54.386 57 26 0 1 57 1 57 3.49e-15 71.2
MS.gene40623.t1 AT1G77980 46.575 73 38 1 1 72 1 73 3.55e-15 72.4
MS.gene40623.t1 AT5G65070 47.692 65 32 1 1 63 1 65 3.70e-15 71.2
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 5.30e-15 69.3
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 5.30e-15 69.3
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 5.30e-15 69.3
MS.gene40623.t1 AT5G65070 50.000 58 29 0 1 58 1 58 6.35e-15 70.5
MS.gene40623.t1 AT2G22540 60.000 50 20 0 1 50 1 50 6.99e-15 70.5
MS.gene40623.t1 AT1G71692 47.222 72 37 1 1 71 1 72 7.71e-15 69.7
MS.gene40623.t1 AT5G65070 50.000 58 29 0 1 58 1 58 7.82e-15 69.7
MS.gene40623.t1 AT1G22130 45.205 73 39 1 1 72 1 73 8.29e-15 71.2
MS.gene40623.t1 AT3G58780 54.237 59 27 0 1 59 16 74 8.57e-15 70.1
MS.gene40623.t1 AT1G77950 45.205 73 39 1 1 72 1 73 9.07e-15 70.5
MS.gene40623.t1 AT1G77950 45.205 73 39 1 1 72 1 73 9.07e-15 70.5
MS.gene40623.t1 AT1G77950 45.205 73 39 1 1 72 1 73 9.07e-15 70.5
MS.gene40623.t1 AT1G77950 45.205 73 39 1 1 72 1 73 9.07e-15 70.5
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 9.16e-15 68.6
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 9.16e-15 68.6
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 9.16e-15 68.6
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 9.16e-15 68.6
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 9.16e-15 68.6
MS.gene40623.t1 AT3G58780 55.172 58 26 0 1 58 16 73 1.05e-14 70.5
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.63e-14 68.9
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.63e-14 68.9
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.63e-14 68.9
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.70e-14 68.6
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 1.70e-14 68.6
MS.gene40623.t1 AT1G69120 51.724 58 28 0 1 58 1 58 1.72e-14 69.3
MS.gene40623.t1 AT2G03710 52.632 57 27 0 1 57 1 57 2.20e-14 68.2
MS.gene40623.t1 AT5G62165 38.554 83 51 0 1 83 1 83 2.27e-14 66.2
MS.gene40623.t1 AT1G17310 52.055 73 33 1 2 74 48 118 2.45e-14 68.6
MS.gene40623.t1 AT5G60910 50.877 57 28 0 1 57 1 57 2.70e-14 68.9
MS.gene40623.t1 AT1G17310 52.055 73 33 1 2 74 59 129 2.84e-14 68.6
MS.gene40623.t1 AT1G18750 40.789 76 43 1 1 74 1 76 3.06e-14 70.1
MS.gene40623.t1 AT1G18750 40.789 76 43 1 1 74 1 76 3.15e-14 70.1
MS.gene40623.t1 AT1G18750 40.789 76 43 1 1 74 1 76 3.26e-14 70.1
MS.gene40623.t1 AT1G69120 51.724 58 28 0 1 58 1 58 3.28e-14 68.9
MS.gene40623.t1 AT1G26310 50.000 58 29 0 1 58 1 58 4.23e-14 68.6
MS.gene40623.t1 AT5G15800 52.632 57 27 0 1 57 1 57 5.26e-14 68.2
MS.gene40623.t1 AT1G69540 44.000 75 41 1 1 74 1 75 5.85e-14 68.9
MS.gene40623.t1 AT1G69540 44.000 75 41 1 1 74 1 75 6.04e-14 68.9
MS.gene40623.t1 AT5G65060 50.909 55 27 0 1 55 1 55 7.08e-14 67.0
MS.gene40623.t1 AT5G23260 59.184 49 20 0 1 49 1 49 7.11e-14 67.8
MS.gene40623.t1 AT5G23260 59.184 49 20 0 1 49 1 49 7.51e-14 67.8
MS.gene40623.t1 AT3G02310 52.632 57 27 0 1 57 1 57 7.64e-14 67.0
MS.gene40623.t1 AT5G15800 52.632 57 27 0 1 57 1 57 7.87e-14 67.8
MS.gene40623.t1 AT1G24260 52.632 57 27 0 1 57 1 57 8.61e-14 67.4
MS.gene40623.t1 AT4G37435 29.605 152 85 5 1 151 1 131 9.24e-14 66.6
MS.gene40623.t1 AT5G23260 59.184 49 20 0 1 49 17 65 9.44e-14 67.8
MS.gene40623.t1 AT1G24260 52.632 57 27 0 1 57 1 57 9.46e-14 67.4
MS.gene40623.t1 AT5G23260 59.184 49 20 0 1 49 17 65 9.53e-14 67.8
MS.gene40623.t1 AT1G24260 52.632 57 27 0 1 57 1 57 9.96e-14 67.4
MS.gene40623.t1 AT5G65060 50.909 55 27 0 1 55 1 55 1.18e-13 66.2
MS.gene40623.t1 AT3G02310 52.632 57 27 0 1 57 1 57 1.21e-13 67.4
MS.gene40623.t1 AT5G65060 50.909 55 27 0 1 55 1 55 1.33e-13 66.2
MS.gene40623.t1 AT2G03710 52.632 57 27 0 1 57 1 57 1.35e-13 67.4
MS.gene40623.t1 AT2G03710 52.632 57 27 0 1 57 1 57 1.38e-13 67.0
MS.gene40623.t1 AT5G65050 49.091 55 28 0 1 55 1 55 1.54e-13 65.9
MS.gene40623.t1 AT5G65080 49.091 55 28 0 1 55 8 62 2.40e-13 65.5
MS.gene40623.t1 AT1G28450 29.448 163 95 4 2 146 8 168 2.59e-13 65.5
MS.gene40623.t1 AT5G65080 49.091 55 28 0 1 55 8 62 3.01e-13 65.5
MS.gene40623.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.68e-13 64.7
MS.gene40623.t1 AT5G65050 49.091 55 28 0 1 55 1 55 3.88e-13 64.7
MS.gene40623.t1 AT5G65050 49.091 55 28 0 1 55 1 55 4.19e-13 65.1
MS.gene40623.t1 AT2G03060 42.105 76 42 2 1 74 1 76 1.91e-12 64.7
MS.gene40623.t1 AT2G03060 42.105 76 42 2 1 74 1 76 1.97e-12 64.7
MS.gene40623.t1 AT2G03060 42.105 76 42 2 1 74 1 76 1.97e-12 64.7
MS.gene40623.t1 AT2G03060 42.105 76 42 2 1 74 1 76 1.97e-12 64.7
MS.gene40623.t1 AT5G49490 43.056 72 37 1 3 70 46 117 2.93e-12 63.9
MS.gene40623.t1 AT2G26320 43.103 58 33 0 1 58 17 74 3.39e-12 60.5
MS.gene40623.t1 AT1G60920 42.466 73 37 2 3 70 5 77 3.84e-12 62.4
MS.gene40623.t1 AT5G38620 40.000 75 41 1 3 73 6 80 2.13e-11 61.6
MS.gene40623.t1 AT5G49420 39.726 73 40 1 3 71 8 80 2.48e-11 61.6
MS.gene40623.t1 AT1G77080 64.103 39 14 0 1 39 1 39 6.02e-11 58.9
MS.gene40623.t1 AT1G77080 64.103 39 14 0 1 39 1 39 7.19e-11 58.5
MS.gene40623.t1 AT1G77080 64.103 39 14 0 1 39 1 39 7.63e-11 57.8

Find 32 sgRNAs with CRISPR-Local

Find 37 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAACAATCCTTATTCTTT+TGG 0.240671 1.4:-43310000 MS.gene40623:CDS
CTCATCTTATTCTCCAAATA+TGG 0.248298 1.4:-43309902 MS.gene40623:CDS
CCTGGGTGACCAAAAGAATA+AGG 0.337629 1.4:+43309991 None:intergenic
CCTATGGAATTCATGCGATT+AGG 0.390950 1.4:+43309931 None:intergenic
CTAGAACTTGTTGAGGTGTT+GGG 0.408328 1.4:-43309868 MS.gene40623:CDS
ATGTTTGATGCTTCTAGCTC+AGG 0.413597 1.4:-43309689 MS.gene40623:CDS
GCTATTGTTGTGTTCTCTCC+AGG 0.420934 1.4:-43310021 MS.gene40623:CDS
AGGCTTTAGTTTCAAATACT+TGG 0.421254 1.4:+43309951 None:intergenic
GCAGCAACAACATCAACTCC+TGG 0.473203 1.4:+43309973 None:intergenic
CACTTTCTCAAAGCGCCGGA+CGG 0.491100 1.4:-43310094 MS.gene40623:CDS
ACTTTCTCAAAGCGCCGGAC+GGG 0.500307 1.4:-43310093 MS.gene40623:CDS
CTCTCAATTCTTTAAGCTCG+AGG 0.514790 1.4:+43309773 None:intergenic
CTTTCTTGAATAAGCCCGTC+CGG 0.521875 1.4:+43310079 None:intergenic
CTAGCTCAGGATCCAGTTGT+GGG 0.528788 1.4:-43309676 MS.gene40623:CDS
ATAAGATGAGGAGTTTCCTA+TGG 0.532335 1.4:+43309915 None:intergenic
TCTAGAACTTGTTGAGGTGT+TGG 0.548141 1.4:-43309869 MS.gene40623:CDS
GAAAGACTCCAACACGAGGC+AGG 0.554822 1.4:-43310118 MS.gene40623:CDS
TCTAGCTCAGGATCCAGTTG+TGG 0.556222 1.4:-43309677 MS.gene40623:CDS
CTATTGTTGTGTTCTCTCCA+GGG 0.556447 1.4:-43310020 MS.gene40623:CDS
CCTAATCGCATGAATTCCAT+AGG 0.557834 1.4:-43309931 MS.gene40623:CDS
AAAGAATAAGGATTGTTCCC+TGG 0.565551 1.4:+43310003 None:intergenic
GTCGCAAAATTAAAATAGAG+AGG 0.572448 1.4:-43310143 MS.gene40623:CDS
ATTGAATCTAGAACTTGTTG+AGG 0.572715 1.4:-43309875 MS.gene40623:CDS
AGGTCACTTTCTCAAAGCGC+CGG 0.595572 1.4:-43310098 MS.gene40623:CDS
CAGCAACAACATCAACTCCT+GGG 0.611229 1.4:+43309974 None:intergenic
CATATTTGGAGAATAAGATG+AGG 0.620665 1.4:+43309903 None:intergenic
TCGCAAAATTAAAATAGAGA+GGG 0.620927 1.4:-43310142 MS.gene40623:CDS
GAAAGTGACCTGCCTCGTGT+TGG 0.631102 1.4:+43310110 None:intergenic
GACTTCAGCTCCGCACAACA+TGG 0.644720 1.4:+43310044 None:intergenic
GTGTTGGGACAAGTTCAAGA+AGG 0.657260 1.4:-43309853 MS.gene40623:CDS
AATGAATTGTCCATGTTGTG+CGG 0.683772 1.4:-43310054 MS.gene40623:CDS
GGGTGAAAGACTCCAACACG+AGG 0.715970 1.4:-43310122 MS.gene40623:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGATTCAATTTTTCCATATT+TGG + chr1.4:43309894-43309913 None:intergenic 20.0%
!!! ATTTTGTCTTCTTTTCTTTT+TGG + chr1.4:43310147-43310166 None:intergenic 20.0%
!!! TTTTGTCTTCTTTTCTTTTT+GGG + chr1.4:43310146-43310165 None:intergenic 20.0%
! TCGCAAAATTAAAATAGAGA+GGG - chr1.4:43309638-43309657 MS.gene40623:CDS 25.0%
CATATTTGGAGAATAAGATG+AGG + chr1.4:43309880-43309899 None:intergenic 30.0%
CTCATCTTATTCTCCAAATA+TGG - chr1.4:43309878-43309897 MS.gene40623:CDS 30.0%
GTCGCAAAATTAAAATAGAG+AGG - chr1.4:43309637-43309656 MS.gene40623:CDS 30.0%
! AGGCTTTAGTTTCAAATACT+TGG + chr1.4:43309832-43309851 None:intergenic 30.0%
!! ATTGAATCTAGAACTTGTTG+AGG - chr1.4:43309905-43309924 MS.gene40623:CDS 30.0%
AAAGAATAAGGATTGTTCCC+TGG + chr1.4:43309780-43309799 None:intergenic 35.0%
AATGAATTGTCCATGTTGTG+CGG - chr1.4:43309726-43309745 MS.gene40623:CDS 35.0%
ATAAGATGAGGAGTTTCCTA+TGG + chr1.4:43309868-43309887 None:intergenic 35.0%
! GGGAACAATCCTTATTCTTT+TGG - chr1.4:43309780-43309799 MS.gene40623:CDS 35.0%
! TACTCTTTTATTCCCACAAC+TGG + chr1.4:43310119-43310138 None:intergenic 35.0%
CCTAATCGCATGAATTCCAT+AGG - chr1.4:43309849-43309868 MS.gene40623:CDS 40.0%
CCTATGGAATTCATGCGATT+AGG + chr1.4:43309852-43309871 None:intergenic 40.0%
CTATTGTTGTGTTCTCTCCA+GGG - chr1.4:43309760-43309779 MS.gene40623:CDS 40.0%
CTCTCAATTCTTTAAGCTCG+AGG + chr1.4:43310010-43310029 None:intergenic 40.0%
!! ATGTTTGATGCTTCTAGCTC+AGG - chr1.4:43310091-43310110 MS.gene40623:CDS 40.0%
!! CTAGAACTTGTTGAGGTGTT+GGG - chr1.4:43309912-43309931 MS.gene40623:CDS 40.0%
!! TCTAGAACTTGTTGAGGTGT+TGG - chr1.4:43309911-43309930 MS.gene40623:CDS 40.0%
CAGCAACAACATCAACTCCT+GGG + chr1.4:43309809-43309828 None:intergenic 45.0%
CCTGGGTGACCAAAAGAATA+AGG + chr1.4:43309792-43309811 None:intergenic 45.0%
CTTTCTTGAATAAGCCCGTC+CGG + chr1.4:43309704-43309723 None:intergenic 45.0%
GCTATTGTTGTGTTCTCTCC+AGG - chr1.4:43309759-43309778 MS.gene40623:CDS 45.0%
GTGTTGGGACAAGTTCAAGA+AGG - chr1.4:43309927-43309946 MS.gene40623:CDS 45.0%
! CCTTATTCTTTTGGTCACCC+AGG - chr1.4:43309789-43309808 MS.gene40623:CDS 45.0%
CTAGCTCAGGATCCAGTTGT+GGG - chr1.4:43310104-43310123 MS.gene40623:CDS 50.0%
GCAGCAACAACATCAACTCC+TGG + chr1.4:43309810-43309829 None:intergenic 50.0%
! AGGTCACTTTCTCAAAGCGC+CGG - chr1.4:43309682-43309701 MS.gene40623:CDS 50.0%
! TCTAGCTCAGGATCCAGTTG+TGG - chr1.4:43310103-43310122 MS.gene40623:CDS 50.0%
GAAAGACTCCAACACGAGGC+AGG - chr1.4:43309662-43309681 MS.gene40623:CDS 55.0%
GAAAGTGACCTGCCTCGTGT+TGG + chr1.4:43309673-43309692 None:intergenic 55.0%
GACTTCAGCTCCGCACAACA+TGG + chr1.4:43309739-43309758 None:intergenic 55.0%
GGGTGAAAGACTCCAACACG+AGG - chr1.4:43309658-43309677 MS.gene40623:CDS 55.0%
!! ACTTTCTCAAAGCGCCGGAC+GGG - chr1.4:43309687-43309706 MS.gene40623:CDS 55.0%
!! CACTTTCTCAAAGCGCCGGA+CGG - chr1.4:43309686-43309705 MS.gene40623:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 43309630 43310172 43309630 ID=MS.gene40623
chr1.4 mRNA 43309630 43310172 43309630 ID=MS.gene40623.t1;Parent=MS.gene40623
chr1.4 exon 43309630 43310172 43309630 ID=MS.gene40623.t1.exon1;Parent=MS.gene40623.t1
chr1.4 CDS 43309630 43310172 43309630 ID=cds.MS.gene40623.t1;Parent=MS.gene40623.t1
Gene Sequence

>MS.gene40623

ATGGGTCGTCGCAAAATTAAAATAGAGAGGGTGAAAGACTCCAACACGAGGCAGGTCACTTTCTCAAAGCGCCGGACGGGCTTATTCAAGAAAGCAAATGAATTGTCCATGTTGTGCGGAGCTGAAGTCGCTATTGTTGTGTTCTCTCCAGGGAACAATCCTTATTCTTTTGGTCACCCAGGAGTTGATGTTGTTGCTGCCAAGTATTTGAAACTAAAGCCTAATCGCATGAATTCCATAGGAAACTCCTCATCTTATTCTCCAAATATGGAAAAATTGAATCTAGAACTTGTTGAGGTGTTGGGACAAGTTCAAGAAGGTGAAAAGCAAGCTAAGAATCATGATGAGATTCTGAAGCAAAACAACGTGACAAAACTCCTCGAGCTTAAAGAATTGAGAGATTCATATAAAGAGCTTCAAGATTGCATAAAATTGCGTCTTAGTGATATCGAGATATCAGAATGTTTGATGCTTCTAGCTCAGGATCCAGTTGTGGGAATAAAAGAGTACTCACCCAAAAAGAAAAGAAGACAAAATTTATGA
Protein sequence

>MS.gene40623.t1

MGRRKIKIERVKDSNTRQVTFSKRRTGLFKKANELSMLCGAEVAIVVFSPGNNPYSFGHPGVDVVAAKYLKLKPNRMNSIGNSSSYSPNMEKLNLELVEVLGQVQEGEKQAKNHDEILKQNNVTKLLELKELRDSYKELQDCIKLRLSDIEISECLMLLAQDPVVGIKEYSPKKKRRQNL