AlfalfaGEDB | MS.gene40989

M. sativa cultivar XinJiangDaYe / MS.gene40989

KEGG: K13412
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005509 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0046872 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40989.t1	XP_013467809.1	99	593	2	1	1	593	1	589	1.80E-279	971.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40989.t1	Q38870	79.8	491	97	1	96	584	154	644	1.1e-192	674.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene40989.t1	A0A072VJT8	99.0	593	2	1	1	593	1	589	1.3e-279	971.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene40989.t1	MTR_1g055255	98.820	593	3	1	1	593	1	589	1214
MS.gene40989.t1	MTR_1g041150	70.333	600	147	9	1	590	1	579	833
MS.gene40989.t1	MTR_7g106710	64.120	602	207	5	1	593	1	602	776
MS.gene40989.t1	MTR_1g054865	62.987	616	177	7	1	575	1	606	764
MS.gene40989.t1	MTR_7g106710	64.875	558	189	4	1	551	1	558	729
MS.gene40989.t1	MTR_5g099240	71.215	469	135	0	116	584	84	552	714
MS.gene40989.t1	MTR_5g099240	71.215	469	135	0	116	584	12	480	714
MS.gene40989.t1	MTR_1g096490	67.280	489	157	2	99	585	2	489	687
MS.gene40989.t1	MTR_3g098070	67.715	477	150	1	116	592	17	489	679
MS.gene40989.t1	MTR_8g095440	68.000	475	148	1	116	590	18	488	675

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene40989.t1	AT3G10660	73.897	544	136	4	45	584	103	644	822
MS.gene40989.t1	AT3G10660	73.897	544	136	4	45	584	103	644	822
MS.gene40989.t1	AT5G04870	68.071	617	159	7	1	587	1	609	821
MS.gene40989.t1	AT2G38910	69.674	521	142	3	59	579	79	583	754
MS.gene40989.t1	AT4G35310	69.456	478	144	1	112	589	81	556	714
MS.gene40989.t1	AT4G35310	69.456	478	144	1	112	589	81	556	714
MS.gene40989.t1	AT2G17290	67.530	502	157	1	83	584	46	541	714
MS.gene40989.t1	AT2G17290	67.530	502	157	1	83	584	46	541	714
MS.gene40989.t1	AT4G38230	69.811	477	143	1	92	567	17	493	708
MS.gene40989.t1	AT4G38230	71.739	460	130	0	108	567	4	463	707

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Find 104 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTGCAAGGACTATTGT+TGG	0.494637	1.3:-40706124	MS.gene40989:CDS
AAAGCTGTTAACCGCTTACT+AGG	0.426437	1.3:+40705047	None:intergenic
AACAGTGGCACGATCGACTA+TGG	0.382127	1.3:-40703741	MS.gene40989:CDS
AAGAGGATGTGGAAGATGTG+AGG	0.656303	1.3:-40706315	MS.gene40989:CDS
AAGCTAGGACAAGGGCAATT+TGG	0.313133	1.3:-40706418	MS.gene40989:CDS
AAGCTGTTAACCGCTTACTA+GGG	0.608056	1.3:+40705048	None:intergenic
AAGGTTGGACTGAAAAGATT+TGG	0.384631	1.3:-40704280	MS.gene40989:CDS
AATAGACTACAATGAATTTG+TGG	0.460686	1.3:-40703400	MS.gene40989:CDS
AATGAACAAGCTCAAGAAAA+TGG	0.336693	1.3:-40704546	MS.gene40989:CDS
AATGCAGAAATGGGTAAGAG+GGG	0.697689	1.3:-40703360	MS.gene40989:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCTAGCATCAATATAACA+GGG	+	chr1.3:40704562-40704581	None:intergenic	30.0%
AATGAACAAGCTCAAGAAAA+TGG	-	chr1.3:40705570-40705589	MS.gene40989:intron	30.0%
AATTAACATTTGGACAAACC+TGG	+	chr1.3:40704148-40704167	None:intergenic	30.0%
AATTAATCTCAATACCTAGG+TGG	-	chr1.3:40706203-40706222	MS.gene40989:CDS	30.0%
ACTGTTAGCAACAAATGTTA+TGG	+	chr1.3:40704640-40704659	None:intergenic	30.0%
AGCTTAAAACGTACTTTGAA+CGG	+	chr1.3:40706648-40706667	None:intergenic	30.0%
ATCGGAACAAGATATATTTG+AGG	-	chr1.3:40704951-40704970	MS.gene40989:intron	30.0%
ATCTTGTACATTCTCTTATG+TGG	-	chr1.3:40704782-40704801	MS.gene40989:intron	30.0%
CAAAAAGCTTGTGAAGAATT+TGG	-	chr1.3:40706513-40706532	MS.gene40989:CDS	30.0%
CATGCATGTGATTGATTAAT+CGG	-	chr1.3:40705196-40705215	MS.gene40989:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	40703302	40706836	40703302	ID=MS.gene40989
chr1.3	mRNA	40703302	40706836	40703302	ID=MS.gene40989.t1;Parent=MS.gene40989
chr1.3	exon	40705990	40706836	40705990	ID=MS.gene40989.t1.exon1;Parent=MS.gene40989.t1
chr1.3	CDS	40705990	40706836	40705990	ID=cds.MS.gene40989.t1;Parent=MS.gene40989.t1
chr1.3	exon	40705314	40705457	40705314	ID=MS.gene40989.t1.exon2;Parent=MS.gene40989.t1
chr1.3	CDS	40705314	40705457	40705314	ID=cds.MS.gene40989.t1;Parent=MS.gene40989.t1
chr1.3	exon	40705036	40705188	40705036	ID=MS.gene40989.t1.exon3;Parent=MS.gene40989.t1
chr1.3	CDS	40705036	40705188	40705036	ID=cds.MS.gene40989.t1;Parent=MS.gene40989.t1
chr1.3	exon	40704538	40704653	40704538	ID=MS.gene40989.t1.exon4;Parent=MS.gene40989.t1
chr1.3	CDS	40704538	40704653	40704538	ID=cds.MS.gene40989.t1;Parent=MS.gene40989.t1
chr1.3	exon	40704237	40704404	40704237	ID=MS.gene40989.t1.exon5;Parent=MS.gene40989.t1
chr1.3	CDS	40704237	40704404	40704237	ID=cds.MS.gene40989.t1;Parent=MS.gene40989.t1
chr1.3	exon	40703551	40703775	40703551	ID=MS.gene40989.t1.exon6;Parent=MS.gene40989.t1
chr1.3	CDS	40703551	40703775	40703551	ID=cds.MS.gene40989.t1;Parent=MS.gene40989.t1
chr1.3	exon	40703302	40703430	40703302	ID=MS.gene40989.t1.exon7;Parent=MS.gene40989.t1
chr1.3	CDS	40703302	40703430	40703302	ID=cds.MS.gene40989.t1;Parent=MS.gene40989.t1

Gene Sequence

>MS.gene40989

ATGGGAAACAACTGTGTCGGAACGAGAACCTTTTTTTCGAAGGATGAATCATCATCACGCGCAACTTTTCCAAGTCCATCTTGCTGGTCACGTTCCAAGAAAGATAGTGCACACAAAACAAGTCCAACAAAACCAAAAGAATCTGTTCAGAACAATCCTCCACCGGTAATGAAAATCGAAAAGGAAGATGAAAAGCCACCACCACAGCAGCAACATCAACAACAACATCATCAAAAACCGCGACAAAAACCACAAACCAATGAAGCTGTTGTTGCTACACCTGCAAAACCAAAGAGACCTCACAATGTGAAGAGACTAGCAAGTGCAGGGCTAAAAGCAGATTCAGTTTTACAGCGAAAAACGGTTAGTCTTAAGGAGTTTTATACTTTAGGACCAAAGCTAGGACAAGGGCAATTTGGAACTACATTCCTTTGTGTCGAGAAATCTACTGGGAAAGAGTATGCATGTAAGTCAATCATGAAGAGGAAGTTGTTGACTGAAGAGGATGTGGAAGATGTGAGGAGGGAGATTCAGATTATGCATCACTTGGCTGGCAGTTCGAATGTGATTTCGATTAAGGAAGCTTCTGAGGATGCAGTTGCTGTTCATGTTGTTATGGAGTTGTGTGCAGGTGGTGAACTTTTTGATAGGATTGTGGAAAGAGGGCATTATACAGAAAGAAAGGCGGCGAAACTTGCAAGGACTATTGTTGGTGTTATTCAGTCATGTCATTCTCTTGGTGTGATGCATCGCGATCTTAAGCCGGAGAATTTTCTTTTTGTTAATCAGCAGGAAGAATCTCCCCTTAAGGCAATCGATTTTGGATTATCTTGTTTTTTCAAACCAGGTTTGTCCAAATGTTAATTCTCTTTTATCTTCAATTGTTTGTTTTTATGGTTATCGAATGGAGATTCATATCGTGAAATGGAAGAAAGGTTTTTCGAATCATGAATATATTAAGTTTGGGTAGTGATTCATTGGAATTAATTGTCAATGAGATTCATGTCTACAATAGATGCATATTACGGATTCCATATTCATATATCGATTGAGTTCAATTTTGTATCAAATCGAGATATGACTCACACTTATCGTAAGATACTGATAACCATGGTTTTCCACATCAATAAAATTTATCTTTTAACTTCAATTGTAAAAAACAAAGATACTTTTGGGTTAGACAAAAGTCCCGTTTTATGTGAAAAAAATTACTAGTGATTGTTACCTTAAGAGGTTTTATTTATTGTCCAATGTCCACCCTGTTATATTGATGCTAGCTTCCCTCGACATAATGCATTTGACGTTACATGAAGCTAATTTCTGCATAGGTAATTGCCATAACATTTGTTGCTAACAGTCAAAGACTCGTTATATTACAGGTGACATTTTCAATGATGTAGTAGGAAGTCCATATTATGTTGCACCTGAAGTTTTACGCAAGCGATATGGTCCAGAAGCAGATGTGTGGAGTGCCGGTGTCATCTTGTACATTCTCTTATGTGGTGTGCCTCCATTTTGGGGCGGTAAGAGTTCTTAAGATATCAAACTTATATTAATTCCAATCTAGCTATTTGCTTAATTTATATTTCCTTCACATGTTTCCTGGTTCAAAACATAGTATAACATTTATCTTTATCCTTGGTAATAGAATCGGAACAAGATATATTTGAGGCCATTTTGAATAATGATCTTGATTTCTCATCGGATCCATGGCCTAGTATCTCTGAAAGTGCAAAAGACTTGGTTAAGAAGATGCTTGTCAGAGACCCTAGTAAGCGGTTAACAGCTTTTGACGTTCTCCGTAAGTTTCTCTGCACTGTTATCCCATTGAGATTTATGGTAGTGAAATGAAAGTTATTAGGCAGCATACAACCTAATTTTATACCTCATTTGGCATGCATGTGATTGATTAATCGGCTATCATATATTTTCCATACCATAGTCCATTTCGTATATCAAGTTCGAGTAGTTTTCTTCAATACACCTTCAATGGTTAAGAGGAAAATCTTTTAAAAAGGTTACTCATTCAGTGAAAAAAATTTTGATCACTAAAATCATGTACTCTAACAAAATATTGAGCATTTTATTATAGTACTTTTGACTTGTGAGTTCTAATCAGTATAGCATTGTGAATTTGAGTTCTTTTACCACATTGTTAATGATGATGATCTGATTCTTTGCAGGTCACCCGTGGATCCAAATTGATGGAGCAGCACCAGACAAGCCTCTAGATTCTGCAGTTTTGAGTCGCATGAAGCAGTTTACTGCAATGAACAAGCTCAAGAAAATGGCACTTAGAGTAAGTTACTTTTCCGGTCAGATAACTCAGTCACACCAGAGTATTATTGACACCGAATATGTCGACTTATTGTATAGGAACTACTTTGATTGTCCAATTTTGCTCTTGTAAATTTTTATGCTGTTCTGTGCAGGTTATTGCAGAGAATCTATCTGAAGAAGAAATTGCTGGATTGAAAGAAATGTTTAAGATGATCGACACAGATAATAGTGGTCATATTACCTTTGAAGAACTCAAGGTTGGACTGAAAAGATTTGGTGCCAATCTAAAAGAATCTGAAATTTACGATCTAATGAAAGCTGTAAGTATAATTCAGGACCGTCTTTATTTCCTCAACTTTACGAAACCTTTGTTAATTATAGCTGTTAACTTCTGTAGTATATACTTATTTATGTATTGGTTCATATTCTTATAATTACATTAGAAGCATTTGGGTTATGATACCAATTATTTATAATTCAATTGCACCGTCAATACATAACATTACTAAGTCAACATGGTGTGACATGTTTGGTAGAAAATCGGGTGCCTTGAATATATAGTTACAGGTTCGACTTTAGGGTGATGCGTATGAAAGAGCATCTGTTGAGAGAAATCCCATAAATTAATCTCAATACCTAGGTGGATTAGTCTTGGAACATATTCTTAACATAACGATTAATTGATAGTAAAAACTAATTAATAATAAAGAAAGTTGGTGTTTTCGTCATTAGTACTAAATTAATTTGACGCATCGATTCCAATTTATGTTTCTGATTTCAGGCAGATGTTGATAACAGTGGCACGATCGACTATGGAGAATTCATAGCTGCAACATTACATTTAAACAAAGTTGATAGGGAAGATCATTTACATGCAGCATTCTCATATTTTGATAAAGATGGAAGTGGATACATCACAAAAGATGAGCTTCAAAAAGCTTGTGAAGAATTTGGCTTTAGAGATGTCCCCTTGGAGGAAATGATCCGAGAAGTTGATCAGAACAATGTGAGTACATTTTATTTTATTTTTGTTTCTCACATGTTCCATCTACGAGAACTAAGTCCGTTCAAAGTACGTTTTAAGCTTGATAATAACTTTGTTATGCTGTATGTTTTGGGTTTTCAGGATGGAAGAATAGACTACAATGAATTTGTGGCTATGATGCATAGAGGGAATGCAGAAATGGGTAAGAGGGGTCGAAAGGGTAGCAGTAGTTTTAGCATTGGATTTAGGGAGGCACTACCAGTATGTTAA

Protein sequence

>MS.gene40989.t1

MGNNCVGTRTFFSKDESSSRATFPSPSCWSRSKKDSAHKTSPTKPKESVQNNPPPVMKIEKEDEKPPPQQQHQQQHHQKPRQKPQTNEAVVATPAKPKRPHNVKRLASAGLKADSVLQRKTVSLKEFYTLGPKLGQGQFGTTFLCVEKSTGKEYACKSIMKRKLLTEEDVEDVRREIQIMHHLAGSSNVISIKEASEDAVAVHVVMELCAGGELFDRIVERGHYTERKAAKLARTIVGVIQSCHSLGVMHRDLKPENFLFVNQQEESPLKAIDFGLSCFFKPGDIFNDVVGSPYYVAPEVLRKRYGPEADVWSAGVILYILLCGVPPFWGESEQDIFEAILNNDLDFSSDPWPSISESAKDLVKKMLVRDPSKRLTAFDVLRHPWIQIDGAAPDKPLDSAVLSRMKQFTAMNKLKKMALRVIAENLSEEEIAGLKEMFKMIDTDNSGHITFEELKVGLKRFGANLKESEIYDLMKAADVDNSGTIDYGEFIAATLHLNKVDREDHLHAAFSYFDKDGSGYITKDELQKACEEFGFRDVPLEEMIREVDQNNDGRIDYNEFVAMMHRGNAEMGKRGRKGSSSFSIGFREALPVC