Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41024.t1 | AES60572.1 | 93.6 | 265 | 17 | 0 | 1 | 265 | 1 | 265 | 9.30E-135 | 489.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41024.t1 | Q6IP65 | 55.9 | 236 | 102 | 1 | 18 | 253 | 9 | 242 | 8.4e-68 | 258.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41024.t1 | G7I8I6 | 93.6 | 265 | 17 | 0 | 1 | 265 | 1 | 265 | 6.7e-135 | 489.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41024.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41024.t1 | MTR_1g056470 | 93.585 | 265 | 17 | 0 | 1 | 265 | 1 | 265 | 0.0 | 505 |
| MS.gene41024.t1 | MTR_3g018640 | 62.257 | 257 | 93 | 1 | 1 | 253 | 1 | 257 | 8.46e-114 | 329 |
| MS.gene41024.t1 | MTR_6g065170 | 59.108 | 269 | 104 | 3 | 1 | 263 | 1 | 269 | 7.95e-105 | 307 |
| MS.gene41024.t1 | MTR_8g106940 | 57.621 | 269 | 108 | 2 | 1 | 263 | 1 | 269 | 2.53e-104 | 306 |
| MS.gene41024.t1 | MTR_3g053170 | 67.727 | 220 | 71 | 0 | 34 | 253 | 26 | 245 | 3.45e-104 | 305 |
| MS.gene41024.t1 | MTR_5g093460 | 59.216 | 255 | 99 | 3 | 3 | 253 | 132 | 385 | 3.08e-99 | 297 |
| MS.gene41024.t1 | MTR_5g093460 | 69.697 | 132 | 39 | 1 | 30 | 161 | 1 | 131 | 1.46e-54 | 182 |
| MS.gene41024.t1 | MTR_1g043540 | 58.824 | 119 | 48 | 1 | 138 | 256 | 9 | 126 | 1.94e-41 | 139 |
| MS.gene41024.t1 | MTR_1g043500 | 47.619 | 63 | 32 | 1 | 192 | 253 | 3 | 65 | 4.07e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41024.t1 | AT3G20800 | 62.205 | 254 | 90 | 2 | 6 | 253 | 5 | 258 | 2.50e-104 | 306 |
| MS.gene41024.t1 | AT5G12980 | 60.392 | 255 | 98 | 2 | 1 | 253 | 1 | 254 | 4.80e-100 | 295 |
| MS.gene41024.t1 | AT2G32550 | 35.185 | 216 | 126 | 4 | 49 | 253 | 67 | 279 | 1.42e-35 | 129 |
| MS.gene41024.t1 | AT2G32550 | 35.122 | 205 | 119 | 4 | 60 | 253 | 39 | 240 | 3.50e-34 | 125 |
| MS.gene41024.t1 | AT2G32550 | 36.943 | 157 | 96 | 2 | 100 | 253 | 29 | 185 | 3.63e-30 | 113 |
Find 50 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAACTCGCACCGTTATTA+TGG | 0.230182 | 1.3:-41504998 | MS.gene41024:CDS |
| CTAACTTACTTGATGTATTA+AGG | 0.245270 | 1.3:+41503389 | None:intergenic |
| TGCCTACGCAATATGGAAAT+TGG | 0.348006 | 1.3:-41503129 | MS.gene41024:CDS |
| GCCGTTGTGCCTACGCAATA+TGG | 0.352059 | 1.3:-41503136 | MS.gene41024:CDS |
| CAATACCCTTGCTCTACTTC+AGG | 0.386132 | 1.3:-41504445 | MS.gene41024:intron |
| AGCAGTTAAGATGGTGGAGT+TGG | 0.389913 | 1.3:+41502759 | None:intergenic |
| GATTTAAGACTTGCGAGTCT+TGG | 0.402589 | 1.3:-41503355 | MS.gene41024:CDS |
| ATGAATGAAAACTTTGTGTC+AGG | 0.407209 | 1.3:+41504263 | None:intergenic |
| AGGAAGGGATACAGATATAT+AGG | 0.410734 | 1.3:+41503409 | None:intergenic |
| TAAGATGGTGGAGTTGGGTT+CGG | 0.419375 | 1.3:+41502765 | None:intergenic |
| TTCTTCAAGGAGGGTGATTG+AGG | 0.449123 | 1.3:+41506134 | None:intergenic |
| TTTGTCAGATGATGATGGTT+TGG | 0.451681 | 1.3:-41502940 | MS.gene41024:CDS |
| CCGTTATTATGGAATTCAAT+TGG | 0.452277 | 1.3:-41504987 | MS.gene41024:CDS |
| GAGGAAGGAAGCAGTTAAGA+TGG | 0.457991 | 1.3:+41502750 | None:intergenic |
| TGCTCTTCATTTGCTCTCCA+AGG | 0.461860 | 1.3:-41506006 | MS.gene41024:intron |
| GTGCTGGAGGCAGATGTAAC+AGG | 0.465456 | 1.3:+41506098 | None:intergenic |
| CATCTTGTTGCCAATGGTGC+TGG | 0.465484 | 1.3:+41506082 | None:intergenic |
| CAGTTGGTCGAGCTTTGGAC+AGG | 0.472419 | 1.3:-41502884 | MS.gene41024:CDS |
| GCAAGTCTTAAATCTTCAAA+TGG | 0.494179 | 1.3:+41503364 | None:intergenic |
| ACATCTGCCTCCAGCACCAT+TGG | 0.494495 | 1.3:-41506092 | MS.gene41024:CDS |
| GCAGTTAAGATGGTGGAGTT+GGG | 0.497274 | 1.3:+41502760 | None:intergenic |
| CTTACTTGATGTATTAAGGA+AGG | 0.509839 | 1.3:+41503393 | None:intergenic |
| CCAATTGAATTCCATAATAA+CGG | 0.510406 | 1.3:+41504987 | None:intergenic |
| TCTTCAAGGAGGGTGATTGA+GGG | 0.516540 | 1.3:+41506135 | None:intergenic |
| TCGAGCTTTGGACAGGATGT+TGG | 0.529344 | 1.3:-41502877 | MS.gene41024:CDS |
| ATATTCACAGGTTAAGACTA+AGG | 0.533680 | 1.3:-41503193 | MS.gene41024:intron |
| TTACTTGATGTATTAAGGAA+GGG | 0.537664 | 1.3:+41503394 | None:intergenic |
| AGTCATTGCTGCCATGGTAA+AGG | 0.543352 | 1.3:-41503332 | MS.gene41024:intron |
| GAAGGAAGCAGTTAAGATGG+TGG | 0.550389 | 1.3:+41502753 | None:intergenic |
| AATTCATTATTCTTCAAGGA+GGG | 0.558130 | 1.3:+41506125 | None:intergenic |
| TTCAAGGAGGGTGATTGAGG+GGG | 0.561905 | 1.3:+41506137 | None:intergenic |
| TCTTGGAGTCATTGCTGCCA+TGG | 0.568265 | 1.3:-41503338 | MS.gene41024:CDS |
| AGCTTTAAAAGACGAGGTGA+AGG | 0.570450 | 1.3:+41502837 | None:intergenic |
| ATCTCACCTGAAGTAGAGCA+AGG | 0.580182 | 1.3:+41504439 | None:intergenic |
| TCAAGGAGGGTGATTGAGGG+GGG | 0.591467 | 1.3:+41506138 | None:intergenic |
| GCATTACTTCAGTTGCGAGA+AGG | 0.595531 | 1.3:+41503157 | None:intergenic |
| TGAATGAAAACTTTGTGTCA+GGG | 0.602907 | 1.3:+41504264 | None:intergenic |
| TGCCAATTTCCATATTGCGT+AGG | 0.604311 | 1.3:+41503127 | None:intergenic |
| GTACAACATCTTGTTGCCAA+TGG | 0.613212 | 1.3:+41506076 | None:intergenic |
| CTTGTTGCCAATGGTGCTGG+AGG | 0.622571 | 1.3:+41506085 | None:intergenic |
| TCCATATTGCGTAGGCACAA+CGG | 0.628181 | 1.3:+41503135 | None:intergenic |
| GTTAAGACTAAGGAAGCGAT+AGG | 0.628788 | 1.3:-41503183 | MS.gene41024:CDS |
| AAATTCATTATTCTTCAAGG+AGG | 0.632490 | 1.3:+41506124 | None:intergenic |
| ATAGAATAATACCTTTACCA+TGG | 0.642599 | 1.3:+41503321 | None:intergenic |
| CTTCAAGGAGGGTGATTGAG+GGG | 0.647804 | 1.3:+41506136 | None:intergenic |
| TCTCACCTGAAGTAGAGCAA+GGG | 0.652890 | 1.3:+41504440 | None:intergenic |
| ATCATAAGCTTTAAAAGACG+AGG | 0.660763 | 1.3:+41502831 | None:intergenic |
| TTTGTGAGACTTGTATAACA+CGG | 0.661280 | 1.3:+41502807 | None:intergenic |
| TGAAAACTTTGTGTCAGGGT+GGG | 0.675917 | 1.3:+41504268 | None:intergenic |
| ATGAAAACTTTGTGTCAGGG+TGG | 0.707370 | 1.3:+41504267 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGAGTAAAAAAATATAAA+TGG | + | chr1.3:41503098-41503117 | None:intergenic | 10.0% |
| !! | TTGAGTAAAAAAATATAAAT+GGG | + | chr1.3:41503097-41503116 | None:intergenic | 10.0% |
| !!! | ATTTTATTAAAGAATAAAGA+AGG | + | chr1.3:41505131-41505150 | None:intergenic | 10.0% |
| !!! | ATTTTTTATATGAAATACAA+GGG | - | chr1.3:41505366-41505385 | MS.gene41024:intron | 10.0% |
| !!! | GAAAAATGAAAATTTTAATT+AGG | - | chr1.3:41503203-41503222 | MS.gene41024:intron | 10.0% |
| !!! | TATTTTTTATATGAAATACA+AGG | - | chr1.3:41505365-41505384 | MS.gene41024:intron | 10.0% |
| !! | AAAAAATTCATTATTCTTCA+AGG | + | chr1.3:41502795-41502814 | None:intergenic | 15.0% |
| !! | AAAATTAAAATTTCACTTCA+TGG | + | chr1.3:41504373-41504392 | None:intergenic | 15.0% |
| !! | AAACAATGAAATATGAAATT+AGG | - | chr1.3:41503516-41503535 | MS.gene41024:intron | 15.0% |
| !! | AAATATTTGTGTTAACAAAT+AGG | + | chr1.3:41504096-41504115 | None:intergenic | 15.0% |
| !! | ACCAAAAAAAAAAAAAAAGA+AGG | + | chr1.3:41505096-41505115 | None:intergenic | 15.0% |
| !! | TAAGAAGAAAATAAAAACAA+CGG | + | chr1.3:41504566-41504585 | None:intergenic | 15.0% |
| !! | TGAGTAAAAAAATATAAATG+GGG | + | chr1.3:41503096-41503115 | None:intergenic | 15.0% |
| !!! | TGACTTTTTTTGTATAAAAA+TGG | - | chr1.3:41505150-41505169 | MS.gene41024:intron | 15.0% |
| !!! | TTAATTTTTTCTTTCTCTTT+TGG | - | chr1.3:41504070-41504089 | MS.gene41024:intron | 15.0% |
| !!! | TTTTTTATATGAAATACAAG+GGG | - | chr1.3:41505367-41505386 | MS.gene41024:intron | 15.0% |
| !! | AAATATGTCACATAAATTGA+TGG | - | chr1.3:41504974-41504993 | MS.gene41024:CDS | 20.0% |
| !! | ATTTATAATTGCTAGAAATG+AGG | - | chr1.3:41504887-41504906 | MS.gene41024:intron | 20.0% |
| !! | ATTTCATTAGGAGTTATAAT+TGG | + | chr1.3:41505911-41505930 | None:intergenic | 20.0% |
| !! | TAAATAGTTCACTCTATATT+GGG | - | chr1.3:41504263-41504282 | MS.gene41024:CDS | 20.0% |
| !! | TTAAATAGTTCACTCTATAT+TGG | - | chr1.3:41504262-41504281 | MS.gene41024:CDS | 20.0% |
| !! | TTAACGCATATAAGAATATT+TGG | + | chr1.3:41503323-41503342 | None:intergenic | 20.0% |
| !! | TTATTTACAGTAGAATTTCT+AGG | - | chr1.3:41504013-41504032 | MS.gene41024:intron | 20.0% |
| !! | TTGATAAGTACAATAATAGT+TGG | + | chr1.3:41504720-41504739 | None:intergenic | 20.0% |
| !! | TTTATAATTGCTAGAAATGA+GGG | - | chr1.3:41504888-41504907 | MS.gene41024:intron | 20.0% |
| !!! | AATTTTTGATTATAGTGAAG+TGG | + | chr1.3:41503566-41503585 | None:intergenic | 20.0% |
| !!! | ATTCTTTTATTAACTAGCTT+TGG | - | chr1.3:41503343-41503362 | MS.gene41024:CDS | 20.0% |
| !!! | ATTTTTGATTATAGTGAAGT+GGG | + | chr1.3:41503565-41503584 | None:intergenic | 20.0% |
| !!! | GCCTTCTTTTTTTTTTTTTT+TGG | - | chr1.3:41505092-41505111 | MS.gene41024:intron | 20.0% |
| !!! | TACTATTGCAATATTTTTAC+AGG | - | chr1.3:41503949-41503968 | MS.gene41024:intron | 20.0% |
| !!! | TGAAATTTTAATTTTCTCTC+AGG | - | chr1.3:41504378-41504397 | MS.gene41024:intron | 20.0% |
| !!! | TGTAGTTTTTATCAAAATTG+TGG | + | chr1.3:41505851-41505870 | None:intergenic | 20.0% |
| !!! | TTTTACATTGAAAAGAACAA+AGG | + | chr1.3:41504145-41504164 | None:intergenic | 20.0% |
| ! | AAACAAATTAAGCATTAGCA+AGG | + | chr1.3:41504297-41504316 | None:intergenic | 25.0% |
| ! | AAATTCATTATTCTTCAAGG+AGG | + | chr1.3:41502792-41502811 | None:intergenic | 25.0% |
| ! | AATTCATTATTCTTCAAGGA+GGG | + | chr1.3:41502791-41502810 | None:intergenic | 25.0% |
| ! | AGTGATATACACATTTCATT+AGG | + | chr1.3:41505923-41505942 | None:intergenic | 25.0% |
| ! | ATAGAATAATACCTTTACCA+TGG | + | chr1.3:41505595-41505614 | None:intergenic | 25.0% |
| ! | ATGAGTGGAATAATATCTAA+CGG | + | chr1.3:41505013-41505032 | None:intergenic | 25.0% |
| ! | CATACATCTTTCAATTTATG+GGG | - | chr1.3:41502938-41502957 | MS.gene41024:CDS | 25.0% |
| ! | CCAATTGAATTCCATAATAA+CGG | + | chr1.3:41503929-41503948 | None:intergenic | 25.0% |
| ! | CCATAAATTGAAAGATGTAT+GGG | + | chr1.3:41502939-41502958 | None:intergenic | 25.0% |
| ! | CCATACATCTTTCAATTTAT+GGG | - | chr1.3:41502937-41502956 | MS.gene41024:CDS | 25.0% |
| ! | CTAACTTACTTGATGTATTA+AGG | + | chr1.3:41505527-41505546 | None:intergenic | 25.0% |
| ! | GAAGAAATACATGTTGTTAA+AGG | - | chr1.3:41503444-41503463 | MS.gene41024:intron | 25.0% |
| ! | GATAAAAAAGTTTAGATGAG+TGG | + | chr1.3:41505028-41505047 | None:intergenic | 25.0% |
| ! | GTTTCATCATGATAAAATCA+TGG | + | chr1.3:41503418-41503437 | None:intergenic | 25.0% |
| ! | TAAATGTGAATACTCTCTAT+GGG | - | chr1.3:41503034-41503053 | MS.gene41024:intron | 25.0% |
| ! | TGGAAACATAAGACATAAAA+TGG | + | chr1.3:41504121-41504140 | None:intergenic | 25.0% |
| ! | TTAAATGTGAATACTCTCTA+TGG | - | chr1.3:41503033-41503052 | MS.gene41024:intron | 25.0% |
| ! | TTACTTGATGTATTAAGGAA+GGG | + | chr1.3:41505522-41505541 | None:intergenic | 25.0% |
| ! | TTCTTACAAAATATACCGAA+TGG | + | chr1.3:41503125-41503144 | None:intergenic | 25.0% |
| !! | AAAATTTTGTCAGATGATGA+TGG | - | chr1.3:41505968-41505987 | MS.gene41024:intron | 25.0% |
| !! | ACAAAGTTTTCATTCATGAA+AGG | - | chr1.3:41504656-41504675 | MS.gene41024:intron | 25.0% |
| !! | AGTTTTTATCAAAATTGTGG+TGG | + | chr1.3:41505848-41505867 | None:intergenic | 25.0% |
| !! | ATAGATATCATTGATTGCAA+TGG | - | chr1.3:41503701-41503720 | MS.gene41024:intron | 25.0% |
| !! | ATTGGTAACTAAATTACAAG+TGG | + | chr1.3:41505893-41505912 | None:intergenic | 25.0% |
| !! | ATTTTGTAAGAATTAGGATG+CGG | - | chr1.3:41503133-41503152 | MS.gene41024:CDS | 25.0% |
| !! | CGGTATATTTTGTAAGAATT+AGG | - | chr1.3:41503127-41503146 | MS.gene41024:CDS | 25.0% |
| !! | TTAAGTTGTTAGTATCTTCA+TGG | + | chr1.3:41504797-41504816 | None:intergenic | 25.0% |
| !! | TTTTACTCAATTCAACCATT+CGG | - | chr1.3:41503107-41503126 | MS.gene41024:intron | 25.0% |
| !!! | AACCTAAGTGATTTTAGAAA+TGG | + | chr1.3:41503745-41503764 | None:intergenic | 25.0% |
| !!! | ATCCATTTCTAAAATCACTT+AGG | - | chr1.3:41503740-41503759 | MS.gene41024:intron | 25.0% |
| !!! | CAAAGCTTTGAATGATATAT+AGG | + | chr1.3:41503250-41503269 | None:intergenic | 25.0% |
| !!! | CAAGTTTTGTATCTTGTTTA+AGG | - | chr1.3:41504510-41504529 | MS.gene41024:CDS | 25.0% |
| !!! | CATCATTTTTCCTCATAAAA+AGG | - | chr1.3:41505411-41505430 | MS.gene41024:intron | 25.0% |
| !!! | TTCTCTCTAATTTATTTTGC+AGG | - | chr1.3:41505234-41505253 | MS.gene41024:intron | 25.0% |
| ACAAGTCTCACAAAAAATGT+AGG | - | chr1.3:41506115-41506134 | MS.gene41024:CDS | 30.0% | |
| ACATTGAAAAGAACAAAGGT+TGG | + | chr1.3:41504141-41504160 | None:intergenic | 30.0% | |
| ATATTCACAGGTTAAGACTA+AGG | - | chr1.3:41505720-41505739 | MS.gene41024:intron | 30.0% | |
| ATGAATGAAAACTTTGTGTC+AGG | + | chr1.3:41504653-41504672 | None:intergenic | 30.0% | |
| CAAGTCTCACAAAAAATGTA+GGG | - | chr1.3:41506116-41506135 | MS.gene41024:CDS | 30.0% | |
| CCCATAAATTGAAAGATGTA+TGG | + | chr1.3:41502940-41502959 | None:intergenic | 30.0% | |
| CCCATACATCTTTCAATTTA+TGG | - | chr1.3:41502936-41502955 | MS.gene41024:CDS | 30.0% | |
| CCGTTATTATGGAATTCAAT+TGG | - | chr1.3:41503926-41503945 | MS.gene41024:intron | 30.0% | |
| CTTACTTGATGTATTAAGGA+AGG | + | chr1.3:41505523-41505542 | None:intergenic | 30.0% | |
| GAGGGAAAGTTAAAACTAAA+TGG | - | chr1.3:41504211-41504230 | MS.gene41024:intron | 30.0% | |
| GCAAGTCTTAAATCTTCAAA+TGG | + | chr1.3:41505552-41505571 | None:intergenic | 30.0% | |
| GTTGGAATTGTGAAAGTAAA+AGG | + | chr1.3:41504171-41504190 | None:intergenic | 30.0% | |
| TAATTTACCACTATCCTTCA+AGG | - | chr1.3:41504852-41504871 | MS.gene41024:intron | 30.0% | |
| TATCCTTCAAGGAAATTTGT+TGG | - | chr1.3:41504863-41504882 | MS.gene41024:intron | 30.0% | |
| TGAAATGTGTATATCACTAC+AGG | - | chr1.3:41505925-41505944 | MS.gene41024:intron | 30.0% | |
| TGAATGAAAACTTTGTGTCA+GGG | + | chr1.3:41504652-41504671 | None:intergenic | 30.0% | |
| TGTTAGCTGCATATAAGAAA+AGG | + | chr1.3:41505482-41505501 | None:intergenic | 30.0% | |
| TGTTGATACATGATATTCAC+AGG | - | chr1.3:41505708-41505727 | MS.gene41024:intron | 30.0% | |
| TTTGTGAGACTTGTATAACA+CGG | + | chr1.3:41506109-41506128 | None:intergenic | 30.0% | |
| ! | ATATAGCTTTTCGACTCATT+TGG | + | chr1.3:41503167-41503186 | None:intergenic | 30.0% |
| ! | ATCCTTCAAGGAAATTTGTT+GGG | - | chr1.3:41504864-41504883 | MS.gene41024:intron | 30.0% |
| ! | TATAGCTTTTCGACTCATTT+GGG | + | chr1.3:41503166-41503185 | None:intergenic | 30.0% |
| ! | TCAAATGTTGCCTTTTTATG+AGG | + | chr1.3:41505424-41505443 | None:intergenic | 30.0% |
| !! | ATCATAAGCTTTAAAAGACG+AGG | + | chr1.3:41506085-41506104 | None:intergenic | 30.0% |
| ACTTAAACCAGATGACTACA+TGG | + | chr1.3:41503597-41503616 | None:intergenic | 35.0% | |
| AGGAAGGGATACAGATATAT+AGG | + | chr1.3:41505507-41505526 | None:intergenic | 35.0% | |
| AGTGGAATAATATCTAACGG+AGG | + | chr1.3:41505010-41505029 | None:intergenic | 35.0% | |
| ATCAAAATTGTGGTGGTTCA+TGG | + | chr1.3:41505841-41505860 | None:intergenic | 35.0% | |
| ATCCCAACAAATTTCCTTGA+AGG | + | chr1.3:41504869-41504888 | None:intergenic | 35.0% | |
| ATGTGATCGACAATGTGAAT+TGG | - | chr1.3:41503631-41503650 | MS.gene41024:intron | 35.0% | |
| ATTTCATCCATGTAGTCATC+TGG | - | chr1.3:41503587-41503606 | MS.gene41024:intron | 35.0% | |
| CAAATTTCCTTGAAGGATAG+TGG | + | chr1.3:41504862-41504881 | None:intergenic | 35.0% | |
| GACAGTGAATATGAGGAAAA+AGG | - | chr1.3:41503486-41503505 | MS.gene41024:intron | 35.0% | |
| GGATATACCAACTACAAAGT+AGG | - | chr1.3:41505171-41505190 | MS.gene41024:intron | 35.0% | |
| GTGGAATAATATCTAACGGA+GGG | + | chr1.3:41505009-41505028 | None:intergenic | 35.0% | |
| TAGTGTGTGTCAACTTGTAT+AGG | + | chr1.3:41503011-41503030 | None:intergenic | 35.0% | |
| TCGTCAATACTAAGTCACTT+TGG | + | chr1.3:41504193-41504212 | None:intergenic | 35.0% | |
| TGTGATCGACAATGTGAATT+GGG | - | chr1.3:41503632-41503651 | MS.gene41024:intron | 35.0% | |
| TGTGTCAACTTGTATAGGAT+TGG | + | chr1.3:41503006-41503025 | None:intergenic | 35.0% | |
| ! | CAATACTAAGTCACTTTGGT+TGG | + | chr1.3:41504189-41504208 | None:intergenic | 35.0% |
| ! | CATGATTTTGTTACAGTGTG+TGG | - | chr1.3:41504619-41504638 | MS.gene41024:intron | 35.0% |
| !! | AAAGTGACTTAGTATTGACG+AGG | - | chr1.3:41504192-41504211 | MS.gene41024:intron | 35.0% |
| !! | AAGTGACTTAGTATTGACGA+GGG | - | chr1.3:41504193-41504212 | MS.gene41024:intron | 35.0% |
| !! | AGATTTTCTGGTGAAAAAGC+AGG | + | chr1.3:41504421-41504440 | None:intergenic | 35.0% |
| !! | CTCAAACTACACATTGACTT+GGG | - | chr1.3:41504931-41504950 | MS.gene41024:intron | 35.0% |
| !! | TTTGTCAGATGATGATGGTT+TGG | - | chr1.3:41505973-41505992 | MS.gene41024:intron | 35.0% |
| !!! | AAGAGCATTTTCTCGTAGAT+CGG | + | chr1.3:41502894-41502913 | None:intergenic | 35.0% |
| AAGAACTCGCACCGTTATTA+TGG | - | chr1.3:41503915-41503934 | MS.gene41024:intron | 40.0% | |
| AGAGTGTGACAGTGAATATG+AGG | - | chr1.3:41503479-41503498 | MS.gene41024:intron | 40.0% | |
| AGATGTATGGGTACAAACCT+TGG | + | chr1.3:41502927-41502946 | None:intergenic | 40.0% | |
| ATGAAAACTTTGTGTCAGGG+TGG | + | chr1.3:41504649-41504668 | None:intergenic | 40.0% | |
| CCAACTACAAAGTAGGTCTT+AGG | - | chr1.3:41505178-41505197 | MS.gene41024:intron | 40.0% | |
| CCAACTGCAAAAAAACGATC+TGG | + | chr1.3:41506016-41506035 | None:intergenic | 40.0% | |
| CCTAAGACCTACTTTGTAGT+TGG | + | chr1.3:41505181-41505200 | None:intergenic | 40.0% | |
| GAATAATATCTAACGGAGGG+AGG | + | chr1.3:41505006-41505025 | None:intergenic | 40.0% | |
| GGGTTAGAAACCAAACAAAC+AGG | - | chr1.3:41504908-41504927 | MS.gene41024:intron | 40.0% | |
| GTACAACATCTTGTTGCCAA+TGG | + | chr1.3:41502840-41502859 | None:intergenic | 40.0% | |
| GTAGTTTGAGCCTGTTTGTT+TGG | + | chr1.3:41504921-41504940 | None:intergenic | 40.0% | |
| GTTAAGACTAAGGAAGCGAT+AGG | - | chr1.3:41505730-41505749 | MS.gene41024:intron | 40.0% | |
| TGAAAACTTTGTGTCAGGGT+GGG | + | chr1.3:41504648-41504667 | None:intergenic | 40.0% | |
| TGCCAATTTCCATATTGCGT+AGG | + | chr1.3:41505789-41505808 | None:intergenic | 40.0% | |
| TGCCTACGCAATATGGAAAT+TGG | - | chr1.3:41505784-41505803 | MS.gene41024:intron | 40.0% | |
| ! | GATTTAAGACTTGCGAGTCT+TGG | - | chr1.3:41505558-41505577 | MS.gene41024:intron | 40.0% |
| ! | GCTCAAACTACACATTGACT+TGG | - | chr1.3:41504930-41504949 | MS.gene41024:intron | 40.0% |
| ! | TGTGCAGCAGTAAGATTTTC+TGG | + | chr1.3:41504433-41504452 | None:intergenic | 40.0% |
| !! | AGAGCATTTTCTCGTAGATC+GGG | + | chr1.3:41502893-41502912 | None:intergenic | 40.0% |
| !! | AGCTTTAAAAGACGAGGTGA+AGG | + | chr1.3:41506079-41506098 | None:intergenic | 40.0% |
| !!! | CCAGATCGTTTTTTTGCAGT+TGG | - | chr1.3:41506013-41506032 | MS.gene41024:CDS | 40.0% |
| AGTCATTGCTGCCATGGTAA+AGG | - | chr1.3:41505581-41505600 | MS.gene41024:intron | 45.0% | |
| AGTCTCGTAACATGGTGCAT+CGG | + | chr1.3:41503071-41503090 | None:intergenic | 45.0% | |
| ATCTCACCTGAAGTAGAGCA+AGG | + | chr1.3:41504477-41504496 | None:intergenic | 45.0% | |
| CAATACCCTTGCTCTACTTC+AGG | - | chr1.3:41504468-41504487 | MS.gene41024:CDS | 45.0% | |
| GCATTACTTCAGTTGCGAGA+AGG | + | chr1.3:41505759-41505778 | None:intergenic | 45.0% | |
| TCCATATTGCGTAGGCACAA+CGG | + | chr1.3:41505781-41505800 | None:intergenic | 45.0% | |
| TCTCACCTGAAGTAGAGCAA+GGG | + | chr1.3:41504476-41504495 | None:intergenic | 45.0% | |
| TCTTCAAGGAGGGTGATTGA+GGG | + | chr1.3:41502781-41502800 | None:intergenic | 45.0% | |
| TGCTCTTCATTTGCTCTCCA+AGG | - | chr1.3:41502907-41502926 | MS.gene41024:CDS | 45.0% | |
| TTCTTCAAGGAGGGTGATTG+AGG | + | chr1.3:41502782-41502801 | None:intergenic | 45.0% | |
| ! | GAGCATTTTCTCGTAGATCG+GGG | + | chr1.3:41502892-41502911 | None:intergenic | 45.0% |
| ! | TTTTGCAGTTGGTCGAGCTT+TGG | - | chr1.3:41506024-41506043 | MS.gene41024:CDS | 45.0% |
| !! | TAAGATGGTGGAGTTGGGTT+CGG | + | chr1.3:41506151-41506170 | None:intergenic | 45.0% |
| !! | AAAATTATAATATTTATGTA+TGG | + | chr1.3:41504539-41504558 | None:intergenic | 5.0% |
| !!! | ATATATAATTTTATTTTTCT+TGG | - | chr1.3:41503861-41503880 | MS.gene41024:intron | 5.0% |
| CATCTTGTTGCCAATGGTGC+TGG | + | chr1.3:41502834-41502853 | None:intergenic | 50.0% | |
| CTTCAAGGAGGGTGATTGAG+GGG | + | chr1.3:41502780-41502799 | None:intergenic | 50.0% | |
| TCTTGGAGTCATTGCTGCCA+TGG | - | chr1.3:41505575-41505594 | MS.gene41024:intron | 50.0% | |
| TTCAAGGAGGGTGATTGAGG+GGG | + | chr1.3:41502779-41502798 | None:intergenic | 50.0% | |
| !! | ATGGGGCTAGTCTCGTAACA+TGG | + | chr1.3:41503079-41503098 | None:intergenic | 50.0% |
| !! | TCGAGCTTTGGACAGGATGT+TGG | - | chr1.3:41506036-41506055 | MS.gene41024:CDS | 50.0% |
| ACATCTGCCTCCAGCACCAT+TGG | - | chr1.3:41502821-41502840 | MS.gene41024:CDS | 55.0% | |
| GCCGTTGTGCCTACGCAATA+TGG | - | chr1.3:41505777-41505796 | MS.gene41024:intron | 55.0% | |
| GTGCTGGAGGCAGATGTAAC+AGG | + | chr1.3:41502818-41502837 | None:intergenic | 55.0% | |
| TCAAGGAGGGTGATTGAGGG+GGG | + | chr1.3:41502778-41502797 | None:intergenic | 55.0% | |
| ! | CTTGTTGCCAATGGTGCTGG+AGG | + | chr1.3:41502831-41502850 | None:intergenic | 55.0% |
| !! | CAGTTGGTCGAGCTTTGGAC+AGG | - | chr1.3:41506029-41506048 | MS.gene41024:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 41502764 | 41506171 | 41502764 | ID=MS.gene41024 |
| chr1.3 | mRNA | 41502764 | 41506171 | 41502764 | ID=MS.gene41024.t1;Parent=MS.gene41024 |
| chr1.3 | exon | 41506007 | 41506171 | 41506007 | ID=MS.gene41024.t1.exon1;Parent=MS.gene41024.t1 |
| chr1.3 | CDS | 41506007 | 41506171 | 41506007 | ID=cds.MS.gene41024.t1;Parent=MS.gene41024.t1 |
| chr1.3 | exon | 41504965 | 41505036 | 41504965 | ID=MS.gene41024.t1.exon2;Parent=MS.gene41024.t1 |
| chr1.3 | CDS | 41504965 | 41505036 | 41504965 | ID=cds.MS.gene41024.t1;Parent=MS.gene41024.t1 |
| chr1.3 | exon | 41504446 | 41504535 | 41504446 | ID=MS.gene41024.t1.exon3;Parent=MS.gene41024.t1 |
| chr1.3 | CDS | 41504446 | 41504535 | 41504446 | ID=cds.MS.gene41024.t1;Parent=MS.gene41024.t1 |
| chr1.3 | exon | 41504258 | 41504300 | 41504258 | ID=MS.gene41024.t1.exon4;Parent=MS.gene41024.t1 |
| chr1.3 | CDS | 41504258 | 41504300 | 41504258 | ID=cds.MS.gene41024.t1;Parent=MS.gene41024.t1 |
| chr1.3 | exon | 41503333 | 41503439 | 41503333 | ID=MS.gene41024.t1.exon5;Parent=MS.gene41024.t1 |
| chr1.3 | CDS | 41503333 | 41503439 | 41503333 | ID=cds.MS.gene41024.t1;Parent=MS.gene41024.t1 |
| chr1.3 | exon | 41503110 | 41503205 | 41503110 | ID=MS.gene41024.t1.exon6;Parent=MS.gene41024.t1 |
| chr1.3 | CDS | 41503110 | 41503205 | 41503110 | ID=cds.MS.gene41024.t1;Parent=MS.gene41024.t1 |
| chr1.3 | exon | 41502764 | 41502988 | 41502764 | ID=MS.gene41024.t1.exon7;Parent=MS.gene41024.t1 |
| chr1.3 | CDS | 41502764 | 41502988 | 41502764 | ID=cds.MS.gene41024.t1;Parent=MS.gene41024.t1 |
| Gene Sequence |
| Protein sequence |
