Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41090.t1 | XP_003625960.1 | 88.9 | 658 | 68 | 2 | 72 | 729 | 1 | 653 | 9.70E-259 | 902.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41090.t1 | P54103 | 38.4 | 589 | 261 | 16 | 173 | 728 | 90 | 609 | 1.3e-54 | 216.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41090.t1 | G7KSS7 | 88.9 | 658 | 68 | 2 | 72 | 729 | 1 | 653 | 7.0e-259 | 902.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41090.t1 | TF | MYB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41090.t1 | MTR_3g113680 | 92.857 | 658 | 42 | 4 | 72 | 729 | 1 | 653 | 0.0 | 1093 |
| MS.gene41090.t1 | MTR_7g109430 | 91.489 | 658 | 51 | 5 | 72 | 729 | 1 | 653 | 0.0 | 1084 |
| MS.gene41090.t1 | MTR_3g114060 | 81.071 | 280 | 44 | 2 | 452 | 729 | 62 | 334 | 7.23e-146 | 429 |
| MS.gene41090.t1 | MTR_8g093080 | 29.245 | 212 | 99 | 3 | 517 | 728 | 140 | 300 | 3.36e-22 | 98.2 |
| MS.gene41090.t1 | MTR_4g109510 | 30.802 | 237 | 112 | 9 | 172 | 371 | 9 | 230 | 1.90e-17 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41090.t1 | AT3G11450 | 62.930 | 669 | 206 | 10 | 75 | 729 | 7 | 647 | 0.0 | 729 |
| MS.gene41090.t1 | AT5G06110 | 58.806 | 670 | 246 | 8 | 73 | 726 | 5 | 660 | 0.0 | 706 |
| MS.gene41090.t1 | AT5G06110 | 58.806 | 670 | 246 | 8 | 73 | 726 | 5 | 660 | 0.0 | 706 |
| MS.gene41090.t1 | AT5G45420 | 32.308 | 195 | 86 | 3 | 533 | 727 | 158 | 306 | 2.45e-19 | 90.1 |
| MS.gene41090.t1 | AT5G45420 | 32.308 | 195 | 86 | 3 | 533 | 727 | 158 | 306 | 2.45e-19 | 90.1 |
| MS.gene41090.t1 | AT5G45420 | 32.308 | 195 | 86 | 3 | 533 | 727 | 158 | 306 | 2.45e-19 | 90.1 |
| MS.gene41090.t1 | AT1G74250 | 29.583 | 240 | 116 | 6 | 172 | 371 | 12 | 238 | 3.47e-16 | 83.2 |
Find 0 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATGTGATTTTTTTATATA+TGG | - | 10674:18537-18556 | None:intergenic | 10.0% |
| !! | AGAAAAAAAAAAAACATGTT+TGG | + | 10674:18775-18794 | MS.gene41090:intron | 15.0% |
| !! | GAAAAAAAAAAAACATGTTT+GGG | + | 10674:18776-18795 | MS.gene41090:intron | 15.0% |
| !!! | ATCATAAATTCTTCTTTTTA+CGG | - | 10674:19698-19717 | None:intergenic | 15.0% |
| !!! | GAAACAAGTAATTAATTTTA+GGG | - | 10674:18881-18900 | None:intergenic | 15.0% |
| !!! | TGAAACAAGTAATTAATTTT+AGG | - | 10674:18882-18901 | None:intergenic | 15.0% |
| !!! | TTTATTGTATTTTGATTTTC+TGG | + | 10674:19063-19082 | MS.gene41090:intron | 15.0% |
| !! | AATCAACAATAATAAATCGA+AGG | + | 10674:18694-18713 | MS.gene41090:intron | 20.0% |
| !! | AATCTGAATCAAGATAAATT+TGG | + | 10674:18610-18629 | MS.gene41090:intron | 20.0% |
| !! | AGAATATTAAACACAAAACA+TGG | - | 10674:19004-19023 | None:intergenic | 20.0% |
| !! | ATTTGATATTGAACAATTGA+GGG | + | 10674:20371-20390 | MS.gene41090:CDS | 20.0% |
| !! | TGATGATAATAATAAGAAAG+TGG | + | 10674:19363-19382 | MS.gene41090:CDS | 20.0% |
| !!! | AAGAGTTTTTTGTATTTTGT+TGG | + | 10674:19142-19161 | MS.gene41090:CDS | 20.0% |
| !!! | TCATAAATTCTTCTTTTTAC+GGG | - | 10674:19697-19716 | None:intergenic | 20.0% |
| !!! | TCGATTTATTATTGTTGATT+TGG | - | 10674:18694-18713 | None:intergenic | 20.0% |
| !!! | TTCATGGTTTTTAGATTTAA+TGG | + | 10674:19040-19059 | MS.gene41090:intron | 20.0% |
| !!! | TTGAAATTTTATTTGGATAC+AGG | + | 10674:19102-19121 | MS.gene41090:intron | 20.0% |
| !!! | TTGATAGTTTCTACAATTTT+TGG | + | 10674:19869-19888 | MS.gene41090:CDS | 20.0% |
| ! | AATAATAAATCGAAGGAATG+CGG | + | 10674:18701-18720 | MS.gene41090:intron | 25.0% |
| ! | CAAGATCATTATGCATTATT+GGG | + | 10674:19475-19494 | MS.gene41090:CDS | 25.0% |
| ! | CATTTGATATTGAACAATTG+AGG | + | 10674:20370-20389 | MS.gene41090:CDS | 25.0% |
| ! | GAGAAAAGTAATCAACAAAA+TGG | + | 10674:20483-20502 | MS.gene41090:CDS | 25.0% |
| ! | GATATTTCGTTGAGAAAATT+GGG | - | 10674:18811-18830 | None:intergenic | 25.0% |
| ! | TTTGATATTGAACAATTGAG+GGG | + | 10674:20372-20391 | MS.gene41090:CDS | 25.0% |
| !! | TGAAATTGACGTTCATTTTA+AGG | + | 10674:19639-19658 | MS.gene41090:CDS | 25.0% |
| !! | TGCTTTCATTATTTCTTCAA+CGG | - | 10674:20679-20698 | None:intergenic | 25.0% |
| !! | TTTTATATATGGACCACATT+AGG | - | 10674:18526-18545 | None:intergenic | 25.0% |
| !!! | AATTTTATTTGGATACAGGT+TGG | + | 10674:19106-19125 | MS.gene41090:intron | 25.0% |
| !!! | TGTTGATAATGCTTATAAGA+GGG | + | 10674:20044-20063 | MS.gene41090:CDS | 25.0% |
| !!! | TTGTTGATAATGCTTATAAG+AGG | + | 10674:20043-20062 | MS.gene41090:CDS | 25.0% |
| AAGAAACGTATCAAAAGCTT+TGG | - | 10674:20736-20755 | None:intergenic | 30.0% | |
| CAGTTTGACGAAACAAAAAT+AGG | - | 10674:19244-19263 | None:intergenic | 30.0% | |
| CGATGATAAGTCTTCAATAA+AGG | + | 10674:19843-19862 | MS.gene41090:CDS | 30.0% | |
| GAAAAAATTTGCCATGATGA+AGG | + | 10674:21103-21122 | MS.gene41090:CDS | 30.0% | |
| GCAAGATCATTATGCATTAT+TGG | + | 10674:19474-19493 | MS.gene41090:CDS | 30.0% | |
| GGATATTTCGTTGAGAAAAT+TGG | - | 10674:18812-18831 | None:intergenic | 30.0% | |
| TCATCTTAGATATCTTGCTA+CGG | + | 10674:19504-19523 | MS.gene41090:CDS | 30.0% | |
| TTCAATCTTCTTTGCTTCTT+TGG | - | 10674:19623-19642 | None:intergenic | 30.0% | |
| ! | TTCACCATTTTCAGTTATTG+TGG | - | 10674:20838-20857 | None:intergenic | 30.0% |
| ! | TTTGGTATTCCTTTAAAAGC+TGG | + | 10674:19887-19906 | MS.gene41090:CDS | 30.0% |
| !! | ACTTTTCCATCTCTTTAAGA+AGG | + | 10674:18951-18970 | MS.gene41090:intron | 30.0% |
| !! | TAAGAAAGTGGTTGATGATA+AGG | + | 10674:19375-19394 | MS.gene41090:CDS | 30.0% |
| !! | TTTTGTTTGAACAGCCATTA+TGG | - | 10674:19179-19198 | None:intergenic | 30.0% |
| AAAACATGTTTGGGCCAAAA+TGG | + | 10674:18785-18804 | MS.gene41090:intron | 35.0% | |
| AACAAGAGAAGAATTGGAAG+GGG | + | 10674:20800-20819 | MS.gene41090:CDS | 35.0% | |
| AAGAGCAAGAAAAAATCTGG+TGG | + | 10674:19433-19452 | MS.gene41090:CDS | 35.0% | |
| AAGCATTATCAACAAGAGTG+CGG | - | 10674:20038-20057 | None:intergenic | 35.0% | |
| AATTCTTCTCTTGTTGACAG+TGG | - | 10674:20795-20814 | None:intergenic | 35.0% | |
| ACAAATGTAGAAGTTTGCAG+TGG | - | 10674:18474-18493 | None:intergenic | 35.0% | |
| ACTGTCAACAAGAGAAGAAT+TGG | + | 10674:20794-20813 | MS.gene41090:CDS | 35.0% | |
| AGCAAGAGCAAGAAAAAATC+TGG | + | 10674:19430-19449 | MS.gene41090:CDS | 35.0% | |
| AGCTGAGAAGAAAAGGAAAA+AGG | + | 10674:20101-20120 | MS.gene41090:CDS | 35.0% | |
| ATTCTTCTCTTGTTGACAGT+GGG | - | 10674:20794-20813 | None:intergenic | 35.0% | |
| CAAAACTGTCAGAAAAAGCT+AGG | + | 10674:19992-20011 | MS.gene41090:CDS | 35.0% | |
| CAACAAGAGAAGAATTGGAA+GGG | + | 10674:20799-20818 | MS.gene41090:CDS | 35.0% | |
| CAACTTCTTTGCCATATACT+TGG | - | 10674:20130-20149 | None:intergenic | 35.0% | |
| CAAGTATATGGCAAAGAAGT+TGG | + | 10674:20128-20147 | MS.gene41090:CDS | 35.0% | |
| CTCGGTCTTAATAAGAAAGA+AGG | + | 10674:19331-19350 | MS.gene41090:CDS | 35.0% | |
| CTTGTGAGTAAGTAATGAGA+CGG | - | 10674:19204-19223 | None:intergenic | 35.0% | |
| GAAAAAGGAGTCCAAGTATA+TGG | + | 10674:20116-20135 | MS.gene41090:CDS | 35.0% | |
| GACATACCTTCTTAAAGAGA+TGG | - | 10674:18960-18979 | None:intergenic | 35.0% | |
| GAGATTCTTATTGCACTTCA+TGG | + | 10674:19024-19043 | MS.gene41090:intron | 35.0% | |
| GAGATTGAGCTATTGAGAAA+AGG | + | 10674:20582-20601 | MS.gene41090:CDS | 35.0% | |
| GCTATCATAAAACTTCGTTG+AGG | + | 10674:19545-19564 | MS.gene41090:CDS | 35.0% | |
| GGAATACAAAAGTTTCCCAA+AGG | + | 10674:20603-20622 | MS.gene41090:CDS | 35.0% | |
| TCAACAAAATGGCTCTTTCA+AGG | + | 10674:20494-20513 | MS.gene41090:CDS | 35.0% | |
| TCAACAAGAGAAGAATTGGA+AGG | + | 10674:20798-20817 | MS.gene41090:CDS | 35.0% | |
| TCAATCTCTTCTTTAGTCCA+AGG | - | 10674:20570-20589 | None:intergenic | 35.0% | |
| TCATATTTCATCGCCTTAAC+CGG | - | 10674:19271-19290 | None:intergenic | 35.0% | |
| TGAGAAAATGGAAGACAAAG+AGG | + | 10674:20401-20420 | MS.gene41090:CDS | 35.0% | |
| TTGATACGTTTCTTGAGAAG+AGG | + | 10674:20742-20761 | MS.gene41090:CDS | 35.0% | |
| TTTGCAACAGAAGAAGTTGA+AGG | + | 10674:20230-20249 | MS.gene41090:CDS | 35.0% | |
| ! | AAACTCTCTCCAGCTTTTAA+AGG | - | 10674:19899-19918 | None:intergenic | 35.0% |
| ! | ATCAAAAGCTTTGGCTGTAT+CGG | - | 10674:20727-20746 | None:intergenic | 35.0% |
| ! | GAGGTTGTTTCAGAATACAT+TGG | + | 10674:20642-20661 | MS.gene41090:CDS | 35.0% |
| ! | TGGTATAGGAGTTGTTGTTA+TGG | - | 10674:20862-20881 | None:intergenic | 35.0% |
| ! | TTGAGAAAATTGGGCCATTT+TGG | - | 10674:18802-18821 | None:intergenic | 35.0% |
| !! | AGCTTTAAAAACCTTCCCAA+AGG | + | 10674:21016-21035 | MS.gene41090:CDS | 35.0% |
| !!! | TCATTTTAAGGCAATCCAAG+AGG | + | 10674:19651-19670 | MS.gene41090:CDS | 35.0% |
| !!! | TGGCAAATTTTTTCTTGCAC+TGG | - | 10674:21097-21116 | None:intergenic | 35.0% |
| !!! | TTTTTTCTTGCACTGGATCA+CGG | - | 10674:21090-21109 | None:intergenic | 35.0% |
| AAAGGAAGCTAACCAGAGAT+GGG | + | 10674:21034-21053 | MS.gene41090:CDS | 40.0% | |
| AACAACAAGCAGCATCAACT+CGG | + | 10674:20929-20948 | MS.gene41090:CDS | 40.0% | |
| AACACCTTGTAGAAGTCTTG+TGG | - | 10674:19763-19782 | None:intergenic | 40.0% | |
| AACTTCGTTGAGGTTTCATC+CGG | + | 10674:19555-19574 | MS.gene41090:CDS | 40.0% | |
| AATACTGAGACGAAAGGAAG+AGG | + | 10674:20074-20093 | MS.gene41090:CDS | 40.0% | |
| AATCAACCAATTCCGTCTCT+AGG | + | 10674:19820-19839 | MS.gene41090:CDS | 40.0% | |
| AATGGCTCTTTCAAGGCTAA+TGG | + | 10674:20501-20520 | MS.gene41090:CDS | 40.0% | |
| ACAGAAGAAGTTGAAGGAGA+AGG | + | 10674:20236-20255 | MS.gene41090:CDS | 40.0% | |
| ACTCACAAGAGCTTCTAGAT+GGG | + | 10674:19215-19234 | MS.gene41090:CDS | 40.0% | |
| ACTGAGTTGCAAGAAAAACG+TGG | + | 10674:20455-20474 | MS.gene41090:CDS | 40.0% | |
| ACTGTCAGAAAAAGCTAGGA+AGG | + | 10674:19996-20015 | MS.gene41090:CDS | 40.0% | |
| AGAAGGAGAAAAAGCTCTTG+CGG | + | 10674:20253-20272 | MS.gene41090:CDS | 40.0% | |
| AGGCAAAAGCTGAGAAGAAA+AGG | + | 10674:20094-20113 | MS.gene41090:CDS | 40.0% | |
| AGTATGTGTTGTGACAAGAC+AGG | - | 10674:20312-20331 | None:intergenic | 40.0% | |
| AGTTTCCCAAAGGAACTTCA+AGG | + | 10674:20613-20632 | MS.gene41090:CDS | 40.0% | |
| ATCATAGAAGGTGGATGGAA+AGG | + | 10674:19962-19981 | MS.gene41090:CDS | 40.0% | |
| CAAAGGAACTTCAAGGAGAT+GGG | + | 10674:20620-20639 | MS.gene41090:CDS | 40.0% | |
| CAATAGAGCTGGACAATCTT+AGG | - | 10674:18411-18430 | None:intergenic | 40.0% | |
| CAGTTATGTCGTTCCTAATG+TGG | + | 10674:18510-18529 | MS.gene41090:CDS | 40.0% | |
| CATCTCCTTGAAGTTCCTTT+GGG | - | 10674:20621-20640 | None:intergenic | 40.0% | |
| CCAGCCACAATAACTGAAAA+TGG | + | 10674:20831-20850 | MS.gene41090:CDS | 40.0% | |
| CCATGATGAAGGAAAGTTTC+AGG | + | 10674:21114-21133 | MS.gene41090:CDS | 40.0% | |
| CCTGAAACTTTCCTTCATCA+TGG | - | 10674:21117-21136 | None:intergenic | 40.0% | |
| CCTTTCGTCTCAGTATTCTA+GGG | - | 10674:20071-20090 | None:intergenic | 40.0% | |
| CTAAGATTGTCCAGCTCTAT+TGG | + | 10674:18409-18428 | MS.gene41090:CDS | 40.0% | |
| GACAACAACAATTCCAACAC+CGG | + | 10674:20899-20918 | MS.gene41090:CDS | 40.0% | |
| GCTCCAATACTCTCAAGATA+AGG | - | 10674:18727-18746 | None:intergenic | 40.0% | |
| GTATATGGCAAAGAAGTTGG+AGG | + | 10674:20131-20150 | MS.gene41090:CDS | 40.0% | |
| GTTTCAGAATACATTGGCAC+TGG | + | 10674:20648-20667 | MS.gene41090:CDS | 40.0% | |
| TACTCACAAGAGCTTCTAGA+TGG | + | 10674:19214-19233 | MS.gene41090:CDS | 40.0% | |
| TAGAGAAGAAGGAGAAACCT+TGG | + | 10674:20550-20569 | MS.gene41090:CDS | 40.0% | |
| TCAAGGAGTTTCAGAACAAG+AGG | + | 10674:20959-20978 | MS.gene41090:CDS | 40.0% | |
| TCCTTTCGTCTCAGTATTCT+AGG | - | 10674:20072-20091 | None:intergenic | 40.0% | |
| TGATCCACAAGACTTCTACA+AGG | + | 10674:19756-19775 | MS.gene41090:CDS | 40.0% | |
| TGTTTCGTCAAACTGTCTTC+CGG | + | 10674:19249-19268 | MS.gene41090:CDS | 40.0% | |
| TGTTTGAACAGCCATTATGG+AGG | - | 10674:19176-19195 | None:intergenic | 40.0% | |
| TTCTTCTCTTGTTGACAGTG+GGG | - | 10674:20793-20812 | None:intergenic | 40.0% | |
| TTGCTGCTGTAAGAATCAGA+TGG | - | 10674:19415-19434 | None:intergenic | 40.0% | |
| TTTCTCCTCTTCAGCAATTC+TGG | - | 10674:20169-20188 | None:intergenic | 40.0% | |
| ! | AAGAAAAAATCTGGTGGCGA+CGG | + | 10674:19439-19458 | MS.gene41090:CDS | 40.0% |
| ! | CCATTTTCAGTTATTGTGGC+TGG | - | 10674:20834-20853 | None:intergenic | 40.0% |
| ! | TCAAAAGCTTTGGCTGTATC+GGG | - | 10674:20726-20745 | None:intergenic | 40.0% |
| !! | AGTGGATTGCATAGCAAGAA+GGG | - | 10674:18456-18475 | None:intergenic | 40.0% |
| !! | ATCTCTGGTTAGCTTCCTTT+GGG | - | 10674:21034-21053 | None:intergenic | 40.0% |
| !! | CTCCTGCTTTTATGAGGAAT+GGG | + | 10674:19785-19804 | MS.gene41090:CDS | 40.0% |
| !! | GTGCGAAAGTGTTGAATTTG+CGG | - | 10674:18933-18952 | None:intergenic | 40.0% |
| !! | TGCGAAAGTGTTGAATTTGC+GGG | - | 10674:18932-18951 | None:intergenic | 40.0% |
| !! | TGTTTGCTCCTGCTTTTATG+AGG | + | 10674:19779-19798 | MS.gene41090:CDS | 40.0% |
| !! | TTGATGCTGCTTGTTGTTGT+TGG | - | 10674:20927-20946 | None:intergenic | 40.0% |
| AAGATCAAACTCATCCGCCT+GGG | - | 10674:19923-19942 | None:intergenic | 45.0% | |
| AATCCCGAGATCATAGAAGG+TGG | + | 10674:19953-19972 | MS.gene41090:CDS | 45.0% | |
| ACCGAGAAGTTTAAGTGCAG+CGG | - | 10674:19317-19336 | None:intergenic | 45.0% | |
| AGCAGGCTACATAGAGAAGA+AGG | + | 10674:20539-20558 | MS.gene41090:CDS | 45.0% | |
| ATCAACTCGGAAGACTCTCA+AGG | + | 10674:20942-20961 | MS.gene41090:CDS | 45.0% | |
| ATTGCATAGCAAGAAGGGGT+AGG | - | 10674:18451-18470 | None:intergenic | 45.0% | |
| CAAAGGAAGCTAACCAGAGA+TGG | + | 10674:21033-21052 | MS.gene41090:CDS | 45.0% | |
| CATCCACCTTCTATGATCTC+GGG | - | 10674:19959-19978 | None:intergenic | 45.0% | |
| CCAAAGGAACTTCAAGGAGA+TGG | + | 10674:20619-20638 | MS.gene41090:CDS | 45.0% | |
| CCATCCACCTTCTATGATCT+CGG | - | 10674:19960-19979 | None:intergenic | 45.0% | |
| CCATCTCCTTGAAGTTCCTT+TGG | - | 10674:20622-20641 | None:intergenic | 45.0% | |
| CCCTAGAATACTGAGACGAA+AGG | + | 10674:20068-20087 | MS.gene41090:CDS | 45.0% | |
| CTGAATCCCGAGATCATAGA+AGG | + | 10674:19950-19969 | MS.gene41090:CDS | 45.0% | |
| CTTCTGTTGCAAAGCAGCTT+CGG | - | 10674:20223-20242 | None:intergenic | 45.0% | |
| GACTTATCATCGCCTAGAGA+CGG | - | 10674:19835-19854 | None:intergenic | 45.0% | |
| GAGGGGTTTGTGTGAGAAAA+TGG | + | 10674:20389-20408 | MS.gene41090:CDS | 45.0% | |
| GATGCAATTGATTGTGCTGC+AGG | - | 10674:20771-20790 | None:intergenic | 45.0% | |
| GGAAACAGTAGTTCTCTAGC+AGG | + | 10674:20522-20541 | MS.gene41090:CDS | 45.0% | |
| GGAGAAACAACGAAAAGCAG+AGG | + | 10674:20182-20201 | MS.gene41090:CDS | 45.0% | |
| GTCAAACTGTCTTCCGGTTA+AGG | + | 10674:19255-19274 | MS.gene41090:CDS | 45.0% | |
| TATGGCAAAGAAGTTGGAGG+AGG | + | 10674:20134-20153 | MS.gene41090:CDS | 45.0% | |
| TCTTGTGGATCACAGTCAGT+GGG | - | 10674:19748-19767 | None:intergenic | 45.0% | |
| TTGCATAGCAAGAAGGGGTA+GGG | - | 10674:18450-18469 | None:intergenic | 45.0% | |
| ! | CGGCCTTATCTTGAGAGTAT+TGG | + | 10674:18721-18740 | MS.gene41090:intron | 45.0% |
| ! | GTGGATTGCATAGCAAGAAG+GGG | - | 10674:18455-18474 | None:intergenic | 45.0% |
| ! | TTTGGCAGCTTCAGTTTGCT+CGG | - | 10674:19605-19624 | None:intergenic | 45.0% |
| !! | CAGTGGATTGCATAGCAAGA+AGG | - | 10674:18457-18476 | None:intergenic | 45.0% |
| !! | CATCTCTGGTTAGCTTCCTT+TGG | - | 10674:21035-21054 | None:intergenic | 45.0% |
| !! | CTGCTTGTTGTTGTTGGTAC+CGG | - | 10674:20921-20940 | None:intergenic | 45.0% |
| !! | CTGCTTTTATGAGGAATGGG+CGG | + | 10674:19788-19807 | MS.gene41090:CDS | 45.0% |
| !! | GCTCCTGCTTTTATGAGGAA+TGG | + | 10674:19784-19803 | MS.gene41090:CDS | 45.0% |
| !!! | TAATTATTTGAAATTTTATT+TGG | + | 10674:19095-19114 | MS.gene41090:intron | 5.0% |
| AGATCAAACTCATCCGCCTG+GGG | - | 10674:19922-19941 | None:intergenic | 50.0% | |
| AGGAACTTCAAGGAGATGGG+AGG | + | 10674:20623-20642 | MS.gene41090:CDS | 50.0% | |
| CAAGATCAAACTCATCCGCC+TGG | - | 10674:19924-19943 | None:intergenic | 50.0% | |
| CCAACACTGCATAAGCCTCT+TGG | - | 10674:19669-19688 | None:intergenic | 50.0% | |
| CCAAGAGGCTTATGCAGTGT+TGG | + | 10674:19666-19685 | MS.gene41090:CDS | 50.0% | |
| CCGAGATCATAGAAGGTGGA+TGG | + | 10674:19957-19976 | MS.gene41090:CDS | 50.0% | |
| CGCCCATTCCTCATAAAAGC+AGG | - | 10674:19790-19809 | None:intergenic | 50.0% | |
| GAAGTTGGAGGAGGAAGAAG+CGG | + | 10674:20143-20162 | MS.gene41090:CDS | 50.0% | |
| GAAGTTTAAGTGCAGCGGCA+TGG | - | 10674:19312-19331 | None:intergenic | 50.0% | |
| GAGGTTTCATCCGGACAAAC+AGG | + | 10674:19564-19583 | MS.gene41090:CDS | 50.0% | |
| GAGTTTCAGAACAAGAGGCG+TGG | + | 10674:20964-20983 | MS.gene41090:CDS | 50.0% | |
| GCCGCTGCACTTAAACTTCT+CGG | + | 10674:19313-19332 | MS.gene41090:CDS | 50.0% | |
| GGAGAAAAAGCTCTTGCGGA+AGG | + | 10674:20257-20276 | MS.gene41090:CDS | 50.0% | |
| GGCTGCATTTCCAATAGAGC+TGG | - | 10674:18422-18441 | None:intergenic | 50.0% | |
| GTCTTGTGGATCACAGTCAG+TGG | - | 10674:19749-19768 | None:intergenic | 50.0% | |
| GTTGTTGTCGTCGTCATCGT+CGG | - | 10674:20888-20907 | None:intergenic | 50.0% | |
| TCATCGCCTAGAGACGGAAT+TGG | - | 10674:19829-19848 | None:intergenic | 50.0% | |
| TGAACAGCCATTATGGAGGC+TGG | - | 10674:19172-19191 | None:intergenic | 50.0% | |
| TTGAATTTGCGGGCGTGAAG+TGG | - | 10674:18922-18941 | None:intergenic | 50.0% | |
| ! | CTTTTATGAGGAATGGGCGG+TGG | + | 10674:19791-19810 | MS.gene41090:CDS | 50.0% |
| !! | CTGGTTAGCTTCCTTTGGGA+AGG | - | 10674:21030-21049 | None:intergenic | 50.0% |
| !! | GTCATCGTCGGTGTTGGTAT+AGG | - | 10674:20876-20895 | None:intergenic | 50.0% |
| !! | GTTGTTGTTGGTACCGGTGT+TGG | - | 10674:20915-20934 | None:intergenic | 50.0% |
| AAGCTGGAGAGAGTTTCCCC+AGG | + | 10674:19903-19922 | MS.gene41090:CDS | 55.0% | |
| AATTTGCGGGCGTGAAGTGG+CGG | - | 10674:18919-18938 | None:intergenic | 55.0% | |
| ACAGCAGCTGCCTGTTTGTC+CGG | - | 10674:19577-19596 | None:intergenic | 55.0% | |
| AGCAAGAAGGGGTAGGGACA+TGG | - | 10674:18444-18463 | None:intergenic | 55.0% | |
| AGCGGCCAGAATTGCTGAAG+AGG | + | 10674:20161-20180 | MS.gene41090:CDS | 55.0% | |
| CACTGGATCACGGTCTTTCC+AGG | - | 10674:21080-21099 | None:intergenic | 55.0% | |
| CAGCTACTCGTTCCCATCTC+TGG | - | 10674:21049-21068 | None:intergenic | 55.0% | |
| CATGGAAAGAGTGACCAGCG+GGG | - | 10674:19294-19313 | None:intergenic | 55.0% | |
| CTTTGGCTGTATCGGGCTTC+TGG | - | 10674:20719-20738 | None:intergenic | 55.0% | |
| GCAAGAAGGGGTAGGGACAT+GGG | - | 10674:18443-18462 | None:intergenic | 55.0% | |
| GCATGGAAAGAGTGACCAGC+GGG | - | 10674:19295-19314 | None:intergenic | 55.0% | |
| GCGATGAAATATGACCCCGC+TGG | + | 10674:19277-19296 | MS.gene41090:CDS | 55.0% | |
| GCGTGAGAAGTGAGGAGAGT+GGG | + | 10674:18749-18768 | MS.gene41090:intron | 55.0% | |
| GGCATGGAAAGAGTGACCAG+CGG | - | 10674:19296-19315 | None:intergenic | 55.0% | |
| TATGAGGAATGGGCGGTGGT+CGG | + | 10674:19795-19814 | MS.gene41090:CDS | 55.0% | |
| TGCGTGAGAAGTGAGGAGAG+TGG | + | 10674:18748-18767 | MS.gene41090:intron | 55.0% | |
| ! | ATCGGGCTTCTGGAGGAGAA+CGG | - | 10674:20709-20728 | None:intergenic | 55.0% |
| !! | GAGTTGGGGGCGTTTCTTAC+AGG | - | 10674:18838-18857 | None:intergenic | 55.0% |
| AGCGAGCGAGCGAGAGAGTT+GGG | - | 10674:18853-18872 | None:intergenic | 60.0% | |
| ATTTGCGGGCGTGAAGTGGC+GGG | - | 10674:18918-18937 | None:intergenic | 60.0% | |
| CAGCCATTATGGAGGCTGGC+TGG | - | 10674:19168-19187 | None:intergenic | 60.0% | |
| CGAGTAGCTGCAGCTGTACC+TGG | + | 10674:21059-21078 | MS.gene41090:CDS | 60.0% | |
| CTGGAGAGAGTTTCCCCAGG+CGG | + | 10674:19906-19925 | MS.gene41090:CDS | 60.0% | |
| GTCGTCGTCATCGTCGGTGT+TGG | - | 10674:20882-20901 | None:intergenic | 60.0% | |
| TGGAGCGTGCGTGAGAAGTG+AGG | + | 10674:18741-18760 | MS.gene41090:intron | 60.0% | |
| TGGCCAGCCAGCCTCCATAA+TGG | + | 10674:19162-19181 | MS.gene41090:CDS | 60.0% | |
| TGGCTGTATCGGGCTTCTGG+AGG | - | 10674:20716-20735 | None:intergenic | 60.0% | |
| !! | GGGGGCGTTTCTTACAGGCT+TGG | - | 10674:18833-18852 | None:intergenic | 60.0% |
| CGAGCGAGCGAGAGAGTTGG+GGG | - | 10674:18851-18870 | None:intergenic | 65.0% | |
| GAGCGAGCGAGCGAGAGAGT+TGG | - | 10674:18854-18873 | None:intergenic | 65.0% | |
| GCGAGCGAGCGAGAGAGTTG+GGG | - | 10674:18852-18871 | None:intergenic | 65.0% | |
| GGTGCACGAGTCTGAACCCC+AGG | - | 10674:18390-18409 | None:intergenic | 65.0% | |
| ! | AGAGGCGTGGTCTGCAGTGC+AGG | + | 10674:20977-20996 | MS.gene41090:CDS | 65.0% |
| ! | CGGGCGTGAAGTGGCGGGAT+CGG | - | 10674:18913-18932 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 10674 | gene | 18376 | 21157 | 18376 | ID=MS.gene41090 |
| 10674 | mRNA | 18376 | 21157 | 18376 | ID=MS.gene41090.t1;Parent=MS.gene41090 |
| 10674 | exon | 18376 | 18531 | 18376 | ID=MS.gene41090.t1.exon1;Parent=MS.gene41090.t1 |
| 10674 | CDS | 18376 | 18531 | 18376 | ID=cds.MS.gene41090.t1;Parent=MS.gene41090.t1 |
| 10674 | exon | 19124 | 21157 | 19124 | ID=MS.gene41090.t1.exon2;Parent=MS.gene41090.t1 |
| 10674 | CDS | 19124 | 21157 | 19124 | ID=cds.MS.gene41090.t1;Parent=MS.gene41090.t1 |
| Gene Sequence |
| Protein sequence |
