Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41096.t1 | XP_013467912.2 | 89.2 | 231 | 24 | 1 | 1 | 230 | 1 | 231 | 7.00E-111 | 410.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41096.t1 | Q9FMC8 | 31.3 | 259 | 149 | 8 | 3 | 237 | 4 | 257 | 8.4e-20 | 99.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41096.t1 | A0A396JMH3 | 89.2 | 231 | 24 | 1 | 1 | 230 | 1 | 231 | 5.1e-111 | 410.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene41096.t1 | TF | OFP |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41096.t1 | MTR_1g058000 | 88.987 | 227 | 24 | 1 | 5 | 230 | 1 | 227 | 1.19e-129 | 366 |
MS.gene41096.t1 | MTR_7g105780 | 46.500 | 200 | 92 | 7 | 3 | 194 | 5 | 197 | 1.33e-43 | 149 |
MS.gene41096.t1 | MTR_1g111640 | 40.952 | 210 | 92 | 6 | 3 | 194 | 4 | 199 | 2.09e-41 | 142 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41096.t1 | AT5G04820 | 32.692 | 260 | 146 | 9 | 3 | 238 | 4 | 258 | 1.31e-31 | 117 |
MS.gene41096.t1 | AT2G36050 | 37.209 | 172 | 75 | 7 | 27 | 194 | 29 | 171 | 7.86e-15 | 72.8 |
MS.gene41096.t1 | AT3G52540 | 41.379 | 116 | 54 | 6 | 82 | 194 | 94 | 198 | 2.29e-11 | 63.2 |
Find 35 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGAAATATTAATTATTTCTT+TGG | 0.213180 | 1.2:+45601295 | None:intergenic |
ATAAGAAAATTCAGTTAATA+TGG | 0.287857 | 1.2:+45601424 | None:intergenic |
ACCTACAAAGGTTGGGTTGA+TGG | 0.345047 | 1.2:+45601481 | None:intergenic |
ATGGAAAATCCTCTTCTTCA+TGG | 0.370442 | 1.2:-45601574 | MS.gene41096:CDS |
ATATGGAGTCAGAAGTTTCT+AGG | 0.382955 | 1.2:+45601441 | None:intergenic |
CAAAGATTCTATCGTGGAAA+TGG | 0.386586 | 1.2:-45601177 | MS.gene41096:CDS |
TCCATCAACCCAACCTTTGT+AGG | 0.396189 | 1.2:-45601482 | MS.gene41096:CDS |
AATCCTCTTCTTCATGGTCT+TGG | 0.397416 | 1.2:-45601568 | MS.gene41096:CDS |
AATATCGAGCTTGTTTCGTT+CGG | 0.425393 | 1.2:+45601323 | None:intergenic |
AGTTTCTAGGATATCTTTGT+TGG | 0.429909 | 1.2:+45601454 | None:intergenic |
GGCTCATGGCATTAACGATT+GGG | 0.430744 | 1.2:-45601150 | MS.gene41096:CDS |
AATGATTTGCGGTTTGTGTT+CGG | 0.436168 | 1.2:-45601363 | MS.gene41096:CDS |
GAGTATTTCAAAGGTAATAG+TGG | 0.437931 | 1.2:-45601401 | MS.gene41096:CDS |
TAATAACTTATTATTACCAT+TGG | 0.440369 | 1.2:-45601249 | MS.gene41096:CDS |
TTCTAGGATATCTTTGTTGG+TGG | 0.454097 | 1.2:+45601457 | None:intergenic |
GTTCTTCTCTTGATTCATTG+TGG | 0.463886 | 1.2:-45600986 | MS.gene41096:CDS |
GTTAATGAGAAAAGAAATCA+TGG | 0.484456 | 1.2:-45601092 | MS.gene41096:CDS |
TTGGTGGAACCTACAAAGGT+TGG | 0.485113 | 1.2:+45601473 | None:intergenic |
TGGGTTGATGGATTTGAATA+CGG | 0.486750 | 1.2:+45601493 | None:intergenic |
TCAATAGAGACAATGATTTG+CGG | 0.506903 | 1.2:-45601374 | MS.gene41096:CDS |
AGGCTCATGGCATTAACGAT+TGG | 0.509284 | 1.2:-45601151 | MS.gene41096:CDS |
GCGAATCCATTGAAAACTCA+AGG | 0.518597 | 1.2:+45601219 | None:intergenic |
TTTGCGGTTTGTGTTCGGAT+AGG | 0.524474 | 1.2:-45601358 | MS.gene41096:CDS |
TGGTGGAACCTACAAAGGTT+GGG | 0.527801 | 1.2:+45601474 | None:intergenic |
GTGGAAATGGTGGAGGCTCA+TGG | 0.536930 | 1.2:-45601164 | MS.gene41096:CDS |
TTCTATCGTGGAAATGGTGG+AGG | 0.540689 | 1.2:-45601171 | MS.gene41096:CDS |
TTTGTTGGTGGAACCTACAA+AGG | 0.547175 | 1.2:+45601469 | None:intergenic |
AACTCAAGGGTGTTCTCCAA+TGG | 0.557424 | 1.2:+45601233 | None:intergenic |
TTTCATCTTATAGTTCACCT+TGG | 0.576082 | 1.2:-45600950 | MS.gene41096:intron |
TGGCCAAGACCATGAAGAAG+AGG | 0.591369 | 1.2:+45601565 | None:intergenic |
AGATTCTATCGTGGAAATGG+TGG | 0.592057 | 1.2:-45601174 | MS.gene41096:CDS |
CGAATCCATTGAAAACTCAA+GGG | 0.622493 | 1.2:+45601220 | None:intergenic |
GAACTATAAGATGAAATACA+AGG | 0.649755 | 1.2:+45600957 | None:intergenic |
GAATCTTTGAAATCTTCACA+AGG | 0.663236 | 1.2:+45601191 | None:intergenic |
AGATTTCAAAGATTCTATCG+TGG | 0.687852 | 1.2:-45601183 | MS.gene41096:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAAAAAAAAAACTTAG+TGG | + | chr1.2:45600551-45600570 | None:intergenic | 10.0% |
!!! | AGTTTTTTTTTTTTTTTTTG+AGG | - | chr1.2:45600554-45600573 | MS.gene41096:intron | 10.0% |
!!! | TGAAATATTAATTATTTCTT+TGG | + | chr1.2:45599188-45599207 | None:intergenic | 10.0% |
!! | ATAAGAAAATTCAGTTAATA+TGG | + | chr1.2:45599059-45599078 | None:intergenic | 15.0% |
!! | GTATAATTAAGTCAAAATAT+AGG | + | chr1.2:45599941-45599960 | None:intergenic | 15.0% |
!! | TAATAACTTATTATTACCAT+TGG | - | chr1.2:45599231-45599250 | MS.gene41096:intron | 15.0% |
!!! | ACATAATAATTTTAGTATGA+TGG | + | chr1.2:45600478-45600497 | None:intergenic | 15.0% |
!!! | ATTTGTAAACAATTGTATTT+TGG | - | chr1.2:45600710-45600729 | MS.gene41096:intron | 15.0% |
!!! | CATAATAATTTTAGTATGAT+GGG | + | chr1.2:45600477-45600496 | None:intergenic | 15.0% |
!!! | TTCTATCGTATAATTTTTTT+CGG | + | chr1.2:45601563-45601582 | None:intergenic | 15.0% |
!! | AAAAAAAAAACTTAGTGGTT+TGG | + | chr1.2:45600546-45600565 | None:intergenic | 20.0% |
!! | AGAAGAAAAATCATAACAAT+AGG | - | chr1.2:45600753-45600772 | MS.gene41096:intron | 20.0% |
!! | ATAAAAGAAAATACTCATAG+TGG | + | chr1.2:45600522-45600541 | None:intergenic | 20.0% |
!! | ATGAATAGTACAAATTCTTT+CGG | - | chr1.2:45599716-45599735 | MS.gene41096:intron | 20.0% |
!! | CACATGTAAAAAATATGAAA+GGG | + | chr1.2:45601122-45601141 | None:intergenic | 20.0% |
!! | GAAGAAAAATCATAACAATA+GGG | - | chr1.2:45600754-45600773 | MS.gene41096:intron | 20.0% |
!! | GTCAAAAAAGTTGTTTAAAA+TGG | - | chr1.2:45600130-45600149 | MS.gene41096:intron | 20.0% |
!! | TAAAGAAAAACAAATCGAAT+AGG | - | chr1.2:45601238-45601257 | MS.gene41096:CDS | 20.0% |
!! | TATACAAATTGGATAATACT+TGG | + | chr1.2:45599876-45599895 | None:intergenic | 20.0% |
!! | TCAATTAAATTGTTTAGAGA+GGG | + | chr1.2:45600891-45600910 | None:intergenic | 20.0% |
!! | TCACATGTAAAAAATATGAA+AGG | + | chr1.2:45601123-45601142 | None:intergenic | 20.0% |
!! | TGTATATAAATGATGTTGAT+TGG | + | chr1.2:45601026-45601045 | None:intergenic | 20.0% |
!! | TTCAATTAAATTGTTTAGAG+AGG | + | chr1.2:45600892-45600911 | None:intergenic | 20.0% |
!! | TTGTTTCCTTAAAAAAAGAT+TGG | - | chr1.2:45601364-45601383 | MS.gene41096:CDS | 20.0% |
!! | TTTATTGTACCAAAAGAATA+AGG | - | chr1.2:45600616-45600635 | MS.gene41096:intron | 20.0% |
!!! | CTAAATGTAGAACATTTTTT+TGG | - | chr1.2:45601586-45601605 | MS.gene41096:CDS | 20.0% |
!!! | GGTTTATATATTGGTAATTT+GGG | - | chr1.2:45601469-45601488 | MS.gene41096:CDS | 20.0% |
!!! | GTAGATTTTTTTATCAAGTT+TGG | + | chr1.2:45600858-45600877 | None:intergenic | 20.0% |
!!! | GTATATAAATGATGTTGATT+GGG | + | chr1.2:45601025-45601044 | None:intergenic | 20.0% |
!!! | TAAGGAAACAAATTTTAATG+TGG | + | chr1.2:45601355-45601374 | None:intergenic | 20.0% |
!!! | TATGATACCGAAATTTTTTT+AGG | - | chr1.2:45601524-45601543 | MS.gene41096:CDS | 20.0% |
!!! | TCAAATCCAATCTTTTTTTA+AGG | + | chr1.2:45601373-45601392 | None:intergenic | 20.0% |
!!! | TGGTTTATATATTGGTAATT+TGG | - | chr1.2:45601468-45601487 | MS.gene41096:CDS | 20.0% |
!!! | TTATTCTTTTGGTACAATAA+AGG | + | chr1.2:45600617-45600636 | None:intergenic | 20.0% |
!!! | TTTCAAGTAATAAAAACTTG+TGG | + | chr1.2:45600588-45600607 | None:intergenic | 20.0% |
!!! | TTTTCATTGGTCAAAAATAA+TGG | + | chr1.2:45600093-45600112 | None:intergenic | 20.0% |
!!! | TTTTCTTATGAGTATTTCAA+AGG | - | chr1.2:45599070-45599089 | MS.gene41096:intron | 20.0% |
! | ACACATGATGGTTTATATAT+TGG | - | chr1.2:45601460-45601479 | MS.gene41096:CDS | 25.0% |
! | ACATTCAACGATATACAAAT+TGG | + | chr1.2:45599887-45599906 | None:intergenic | 25.0% |
! | AGTAATAAAAACTTGTGGTT+TGG | + | chr1.2:45600583-45600602 | None:intergenic | 25.0% |
! | ATTCACTACTCAAAATGATT+TGG | + | chr1.2:45599618-45599637 | None:intergenic | 25.0% |
! | CTATCGTCCTAAAAAAATTT+CGG | + | chr1.2:45601534-45601553 | None:intergenic | 25.0% |
! | CTGAAATATTGTTTCAATCT+AGG | + | chr1.2:45600349-45600368 | None:intergenic | 25.0% |
! | GAACTATAAGATGAAATACA+AGG | + | chr1.2:45599526-45599545 | None:intergenic | 25.0% |
! | GTTAATGAGAAAAGAAATCA+TGG | - | chr1.2:45599388-45599407 | MS.gene41096:intron | 25.0% |
! | TCAAAGTACAATATTACAAG+TGG | - | chr1.2:45599823-45599842 | MS.gene41096:intron | 25.0% |
! | TCATGTCTTGTATTGAATAT+TGG | - | chr1.2:45601202-45601221 | MS.gene41096:CDS | 25.0% |
! | TGAGCTTCAACTTAAAAAAA+TGG | + | chr1.2:45600973-45600992 | None:intergenic | 25.0% |
! | TTGGTAAGTTAAGGAATAAA+AGG | - | chr1.2:45599549-45599568 | MS.gene41096:intron | 25.0% |
!! | AAAATAATGGAGAGAGAAAA+AGG | + | chr1.2:45600080-45600099 | None:intergenic | 25.0% |
!! | ATTTAATTGAAGTACCACAA+TGG | - | chr1.2:45600901-45600920 | MS.gene41096:intron | 25.0% |
!! | CTTGAAGTTTCAAACAATTT+TGG | - | chr1.2:45601313-45601332 | MS.gene41096:CDS | 25.0% |
!! | CTTTTATCGAGTGTTTAATT+TGG | + | chr1.2:45600175-45600194 | None:intergenic | 25.0% |
!! | TCACTCATTTTCTTAAACTA+CGG | + | chr1.2:45600318-45600337 | None:intergenic | 25.0% |
!! | TCTCTTTTCAAAAACAAAGA+TGG | - | chr1.2:45598887-45598906 | MS.gene41096:CDS | 25.0% |
!! | TTAATCCATAGCTTTTTAGA+GGG | - | chr1.2:45599908-45599927 | MS.gene41096:intron | 25.0% |
!! | TTTAATTGAAGTACCACAAT+GGG | - | chr1.2:45600902-45600921 | MS.gene41096:intron | 25.0% |
!! | TTTCATTGATTAACACATGA+TGG | - | chr1.2:45601448-45601467 | MS.gene41096:CDS | 25.0% |
!! | TTTTATTCCTTAACTTACCA+AGG | + | chr1.2:45599550-45599569 | None:intergenic | 25.0% |
!!! | ACAATTGTATTTTGGTAGAA+TGG | - | chr1.2:45600718-45600737 | MS.gene41096:intron | 25.0% |
!!! | CTTTTTTTTACCATAGATTG+AGG | - | chr1.2:45600437-45600456 | MS.gene41096:intron | 25.0% |
!!! | TAAAAGAAAGTGTTTTTGGT+TGG | + | chr1.2:45598949-45598968 | None:intergenic | 25.0% |
!!! | TCATTTCTCTTAATTTGTAG+TGG | + | chr1.2:45599979-45599998 | None:intergenic | 25.0% |
!!! | TCTATTTTCTCACTTTTCAT+TGG | + | chr1.2:45600106-45600125 | None:intergenic | 25.0% |
!!! | TTGTAAAAGCCTTATTCTTT+TGG | + | chr1.2:45600628-45600647 | None:intergenic | 25.0% |
AAAATACTCATAGTGGTCAA+CGG | + | chr1.2:45600515-45600534 | None:intergenic | 30.0% | |
AATAGTACAAATTCTTTCGG+TGG | - | chr1.2:45599719-45599738 | MS.gene41096:intron | 30.0% | |
ACATTATCTATAACTCCAGT+AGG | + | chr1.2:45601411-45601430 | None:intergenic | 30.0% | |
AGATTTCAAAGATTCTATCG+TGG | - | chr1.2:45599297-45599316 | MS.gene41096:intron | 30.0% | |
ATTGTTTCAATCTAGGTTTG+TGG | + | chr1.2:45600342-45600361 | None:intergenic | 30.0% | |
CTCTCTTGTACAATTTGTAT+GGG | - | chr1.2:45599765-45599784 | MS.gene41096:intron | 30.0% | |
GAGTATTTCAAAGGTAATAG+TGG | - | chr1.2:45599079-45599098 | MS.gene41096:intron | 30.0% | |
GTAAGTTAAGGAATAAAAGG+TGG | - | chr1.2:45599552-45599571 | MS.gene41096:intron | 30.0% | |
TATCATAATGCCTCAATCTA+TGG | + | chr1.2:45600450-45600469 | None:intergenic | 30.0% | |
TATGCTTCCAAAATGTAACT+TGG | - | chr1.2:45601284-45601303 | MS.gene41096:CDS | 30.0% | |
TCAATAGAGACAATGATTTG+CGG | - | chr1.2:45599106-45599125 | MS.gene41096:intron | 30.0% | |
TCTCTCTTGTACAATTTGTA+TGG | - | chr1.2:45599764-45599783 | MS.gene41096:intron | 30.0% | |
TTGTTTCAATCTAGGTTTGT+GGG | + | chr1.2:45600341-45600360 | None:intergenic | 30.0% | |
TTTCATCTTATAGTTCACCT+TGG | - | chr1.2:45599530-45599549 | MS.gene41096:intron | 30.0% | |
! | AAAGTTTTCCTAAATCCTAC+TGG | - | chr1.2:45601393-45601412 | MS.gene41096:CDS | 30.0% |
! | GTTAATCCATAGCTTTTTAG+AGG | - | chr1.2:45599907-45599926 | MS.gene41096:intron | 30.0% |
!! | AGTTTCTAGGATATCTTTGT+TGG | + | chr1.2:45599029-45599048 | None:intergenic | 30.0% |
!! | GAATCTTTGAAATCTTCACA+AGG | + | chr1.2:45599292-45599311 | None:intergenic | 30.0% |
!! | TTCTCTTAATTTGTAGTGGT+TGG | + | chr1.2:45599975-45599994 | None:intergenic | 30.0% |
!!! | AAAGCTTTTGAGTTGGTATT+TGG | - | chr1.2:45599363-45599382 | MS.gene41096:intron | 30.0% |
!!! | GCTCTAAAAGAAAGTGTTTT+TGG | + | chr1.2:45598953-45598972 | None:intergenic | 30.0% |
!!! | GTAGAACATTTTTTTGGAGA+GGG | - | chr1.2:45601592-45601611 | MS.gene41096:CDS | 30.0% |
!!! | TGTAGAACATTTTTTTGGAG+AGG | - | chr1.2:45601591-45601610 | MS.gene41096:CDS | 30.0% |
AAATACTCATAGTGGTCAAC+GGG | + | chr1.2:45600514-45600533 | None:intergenic | 35.0% | |
AAATTAGATGTGACCTTCGT+AGG | + | chr1.2:45600825-45600844 | None:intergenic | 35.0% | |
AATTTGTATGGGTAGCACTT+GGG | - | chr1.2:45599776-45599795 | MS.gene41096:intron | 35.0% | |
AGGAATAAAAGGTGGAGATT+TGG | - | chr1.2:45599560-45599579 | MS.gene41096:intron | 35.0% | |
ATATGGAGTCAGAAGTTTCT+AGG | + | chr1.2:45599042-45599061 | None:intergenic | 35.0% | |
ATGGAAAATCCTCTTCTTCA+TGG | - | chr1.2:45598906-45598925 | MS.gene41096:CDS | 35.0% | |
CAAAGATTCTATCGTGGAAA+TGG | - | chr1.2:45599303-45599322 | MS.gene41096:intron | 35.0% | |
CGAATCCATTGAAAACTCAA+GGG | + | chr1.2:45599263-45599282 | None:intergenic | 35.0% | |
CTATAACTCCAGTAGGATTT+AGG | + | chr1.2:45601404-45601423 | None:intergenic | 35.0% | |
GTCAAGAAGTTGTCAAAAAG+TGG | + | chr1.2:45600013-45600032 | None:intergenic | 35.0% | |
GTTCTTCTCTTGATTCATTG+TGG | - | chr1.2:45599494-45599513 | MS.gene41096:intron | 35.0% | |
TAGTTCACCTTGGTAAGTTA+AGG | - | chr1.2:45599540-45599559 | MS.gene41096:intron | 35.0% | |
! | AATATCGAGCTTGTTTCGTT+CGG | + | chr1.2:45599160-45599179 | None:intergenic | 35.0% |
! | AATGATTTGCGGTTTGTGTT+CGG | - | chr1.2:45599117-45599136 | MS.gene41096:intron | 35.0% |
! | ACCAACTCAAAAGCTTTTCT+AGG | + | chr1.2:45599360-45599379 | None:intergenic | 35.0% |
! | CCAACTCAAAAGCTTTTCTA+GGG | + | chr1.2:45599359-45599378 | None:intergenic | 35.0% |
! | GGATAATACTTGGTGACAAT+CGG | + | chr1.2:45599866-45599885 | None:intergenic | 35.0% |
! | TGATTTGTGATTCTGCGTTT+CGG | + | chr1.2:45600231-45600250 | None:intergenic | 35.0% |
!! | TGGGTTGATGGATTTGAATA+CGG | + | chr1.2:45598990-45599009 | None:intergenic | 35.0% |
!! | TTCTAGGATATCTTTGTTGG+TGG | + | chr1.2:45599026-45599045 | None:intergenic | 35.0% |
!!! | GTTTTTGGTTGGTTACAAGA+TGG | + | chr1.2:45598938-45598957 | None:intergenic | 35.0% |
AACCATCTGGTACACTTGTT+TGG | + | chr1.2:45601178-45601197 | None:intergenic | 40.0% | |
AAGACATGAACTCAACCATC+TGG | + | chr1.2:45601191-45601210 | None:intergenic | 40.0% | |
AATACTCATAGTGGTCAACG+GGG | + | chr1.2:45600513-45600532 | None:intergenic | 40.0% | |
AATCCTCTTCTTCATGGTCT+TGG | - | chr1.2:45598912-45598931 | MS.gene41096:CDS | 40.0% | |
ACCAAGCATCTATATGGTGA+TGG | + | chr1.2:45600272-45600291 | None:intergenic | 40.0% | |
ACCATCACCATATAGATGCT+TGG | - | chr1.2:45600268-45600287 | MS.gene41096:intron | 40.0% | |
AGATTCTATCGTGGAAATGG+TGG | - | chr1.2:45599306-45599325 | MS.gene41096:intron | 40.0% | |
AGCAACACCAAGCATCTATA+TGG | + | chr1.2:45600278-45600297 | None:intergenic | 40.0% | |
ATTGAACGACAATCAGAGAG+CGG | - | chr1.2:45600197-45600216 | MS.gene41096:intron | 40.0% | |
CAATTTGTATGGGTAGCACT+TGG | - | chr1.2:45599775-45599794 | MS.gene41096:intron | 40.0% | |
GCGAATCCATTGAAAACTCA+AGG | + | chr1.2:45599264-45599283 | None:intergenic | 40.0% | |
TTAATTGCATCAGCCCATTG+TGG | + | chr1.2:45600918-45600937 | None:intergenic | 40.0% | |
! | GAACACCCTTGAGTTTTCAA+TGG | - | chr1.2:45599255-45599274 | MS.gene41096:intron | 40.0% |
! | GCGCAATCCAAGTTACATTT+TGG | + | chr1.2:45601294-45601313 | None:intergenic | 40.0% |
! | TTCCACCCTCTAAAAAGCTA+TGG | + | chr1.2:45599916-45599935 | None:intergenic | 40.0% |
! | TTTGTTGGTGGAACCTACAA+AGG | + | chr1.2:45599014-45599033 | None:intergenic | 40.0% |
!! | ATCCATAGCTTTTTAGAGGG+TGG | - | chr1.2:45599911-45599930 | MS.gene41096:intron | 40.0% |
!! | CCCTAGAAAAGCTTTTGAGT+TGG | - | chr1.2:45599356-45599375 | MS.gene41096:intron | 40.0% |
!! | GACATTGTAGTTGGTGACAT+TGG | - | chr1.2:45599800-45599819 | MS.gene41096:intron | 40.0% |
!!! | GAATACGGTGTCGTTTTTGT+TGG | + | chr1.2:45598975-45598994 | None:intergenic | 40.0% |
ACCTTCGTAGGAGTTGAAGT+CGG | + | chr1.2:45600813-45600832 | None:intergenic | 45.0% | |
AGGCTCATGGCATTAACGAT+TGG | - | chr1.2:45599329-45599348 | MS.gene41096:intron | 45.0% | |
CACTTGGGTGACATTGTAGT+TGG | - | chr1.2:45599791-45599810 | MS.gene41096:intron | 45.0% | |
GACCAAACAAGTGTACCAGA+TGG | - | chr1.2:45601173-45601192 | MS.gene41096:CDS | 45.0% | |
GCTCTCTGATTGTCGTTCAA+TGG | + | chr1.2:45600198-45600217 | None:intergenic | 45.0% | |
GGCTCATGGCATTAACGATT+GGG | - | chr1.2:45599330-45599349 | MS.gene41096:intron | 45.0% | |
GTTGATCGTCTTTGACAGTG+CGG | - | chr1.2:45600380-45600399 | MS.gene41096:intron | 45.0% | |
TCCATCAACCCAACCTTTGT+AGG | - | chr1.2:45598998-45599017 | MS.gene41096:intron | 45.0% | |
TGGTGGAACCTACAAAGGTT+GGG | + | chr1.2:45599009-45599028 | None:intergenic | 45.0% | |
TTCTATCGTGGAAATGGTGG+AGG | - | chr1.2:45599309-45599328 | MS.gene41096:intron | 45.0% | |
TTGGTGGAACCTACAAAGGT+TGG | + | chr1.2:45599010-45599029 | None:intergenic | 45.0% | |
TTTGCGGTTTGTGTTCGGAT+AGG | - | chr1.2:45599122-45599141 | MS.gene41096:intron | 45.0% | |
TTTGTGATTCTGCGTTTCGG+TGG | + | chr1.2:45600228-45600247 | None:intergenic | 45.0% | |
! | GGGACATGCTTTTGCTTCAA+CGG | - | chr1.2:45601489-45601508 | MS.gene41096:CDS | 45.0% |
!! | AACTCAAGGGTGTTCTCCAA+TGG | + | chr1.2:45599250-45599269 | None:intergenic | 45.0% |
!! | ACCTACAAAGGTTGGGTTGA+TGG | + | chr1.2:45599002-45599021 | None:intergenic | 45.0% |
!! | TAGATGCTTGGTGTTGCTGT+CGG | - | chr1.2:45600280-45600299 | MS.gene41096:intron | 45.0% |
ATAGGGCTCAAGCTCAGCTT+AGG | - | chr1.2:45600771-45600790 | MS.gene41096:intron | 50.0% | |
TCCGACTTCAACTCCTACGA+AGG | - | chr1.2:45600809-45600828 | MS.gene41096:intron | 50.0% | |
TGGCCAAGACCATGAAGAAG+AGG | + | chr1.2:45598918-45598937 | None:intergenic | 50.0% | |
! | GTGGAAATGGTGGAGGCTCA+TGG | - | chr1.2:45599316-45599335 | MS.gene41096:intron | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 45598863 | 45601639 | 45598863 | ID=MS.gene41096 |
chr1.2 | mRNA | 45598863 | 45601639 | 45598863 | ID=MS.gene41096.t1;Parent=MS.gene41096 |
chr1.2 | exon | 45600951 | 45601639 | 45600951 | ID=MS.gene41096.t1.exon1;Parent=MS.gene41096.t1 |
chr1.2 | CDS | 45600951 | 45601639 | 45600951 | ID=cds.MS.gene41096.t1;Parent=MS.gene41096.t1 |
chr1.2 | exon | 45598863 | 45598956 | 45598863 | ID=MS.gene41096.t1.exon2;Parent=MS.gene41096.t1 |
chr1.2 | CDS | 45598863 | 45598956 | 45598863 | ID=cds.MS.gene41096.t1;Parent=MS.gene41096.t1 |
Gene Sequence |
Protein sequence |