AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41151

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41151.t1 MTR_4g064150 93.207 736 43 2 1 730 1 735 0.0 1391
MS.gene41151.t1 MTR_4g064120 72.030 665 135 7 67 730 14 628 0.0 934
MS.gene41151.t1 MTR_4g064180 71.880 665 136 8 67 730 14 628 0.0 923
MS.gene41151.t1 MTR_2g097410 56.354 779 255 17 1 730 1 743 0.0 816
MS.gene41151.t1 MTR_4g064160 49.341 683 295 13 77 730 26 686 0.0 603
MS.gene41151.t1 MTR_7g062120 44.604 695 328 17 77 730 64 742 0.0 543
MS.gene41151.t1 MTR_2g097467 44.544 669 296 18 80 730 45 656 2.15e-173 512
MS.gene41151.t1 MTR_4g064200 52.148 512 220 9 233 730 152 652 1.02e-172 510
MS.gene41151.t1 MTR_2g097473 44.978 667 296 18 80 730 45 656 3.77e-171 506
MS.gene41151.t1 MTR_2g097463 43.385 650 311 13 90 730 56 657 1.18e-165 492
MS.gene41151.t1 MTR_2g097310 49.028 463 218 8 270 730 194 640 8.63e-157 469
MS.gene41151.t1 MTR_2g097350 49.254 469 213 9 270 730 191 642 1.22e-151 456
MS.gene41151.t1 MTR_2g097390 47.134 471 230 8 265 730 187 643 5.41e-149 449
MS.gene41151.t1 MTR_2g097380 44.516 465 197 8 270 730 156 563 1.67e-131 401
MS.gene41151.t1 MTR_2g082090 32.979 376 247 4 352 727 208 578 1.36e-67 233
MS.gene41151.t1 MTR_5g097480 32.181 376 250 3 352 727 173 543 5.09e-63 220
MS.gene41151.t1 MTR_3g056110 32.804 378 245 6 352 727 171 541 1.77e-60 213
MS.gene41151.t1 MTR_2g026250 29.894 378 259 4 351 727 223 595 1.05e-58 209
MS.gene41151.t1 MTR_4g133660 30.729 384 250 7 351 728 170 543 5.30e-57 203
MS.gene41151.t1 MTR_5g094450 31.865 386 242 9 352 727 157 531 2.74e-56 201
MS.gene41151.t1 MTR_8g442410 30.500 400 242 7 348 730 147 527 4.63e-54 195
MS.gene41151.t1 MTR_7g027190 30.923 401 240 7 346 727 290 672 2.84e-53 196
MS.gene41151.t1 MTR_1g029420 28.877 374 261 3 354 727 223 591 2.98e-53 194
MS.gene41151.t1 MTR_3g089055 28.877 374 261 3 354 727 201 569 3.41e-53 193
MS.gene41151.t1 MTR_3g089055 28.877 374 261 3 354 727 196 564 4.03e-53 193
MS.gene41151.t1 MTR_4g104020 29.899 398 248 8 345 727 138 519 6.12e-53 192
MS.gene41151.t1 MTR_3g065980 30.435 414 251 8 331 727 146 539 1.09e-49 183
MS.gene41151.t1 MTR_7g074650 30.541 370 239 7 360 729 442 793 2.32e-46 177
MS.gene41151.t1 MTR_4g076140 27.293 458 261 9 332 727 21 468 5.47e-45 168
MS.gene41151.t1 MTR_2g034260 29.899 398 249 9 346 727 200 583 5.97e-44 167
MS.gene41151.t1 MTR_2g034250 29.873 395 254 9 346 727 200 584 7.01e-43 164
MS.gene41151.t1 MTR_5g009080 27.356 435 246 10 353 727 53 477 9.87e-41 156
MS.gene41151.t1 MTR_3g022830 26.366 421 249 8 357 727 26 435 2.20e-40 154
MS.gene41151.t1 MTR_4g102790 26.804 388 262 10 352 729 288 663 3.38e-39 154
MS.gene41151.t1 MTR_4g076020 27.224 371 243 5 360 730 88 431 6.62e-39 150
MS.gene41151.t1 MTR_4g097080 28.312 385 256 10 354 729 131 504 4.83e-38 149
MS.gene41151.t1 MTR_2g089100 26.406 409 258 9 353 730 49 445 4.54e-37 145
MS.gene41151.t1 MTR_2g034280 27.990 393 261 9 346 727 193 574 5.32e-36 144
MS.gene41151.t1 MTR_1g069725 27.506 389 246 14 348 727 101 462 1.15e-35 141
MS.gene41151.t1 MTR_1g096030 30.250 400 236 14 353 727 77 458 1.77e-34 137
MS.gene41151.t1 MTR_3g072710 27.047 403 262 10 345 727 109 499 3.28e-33 134
MS.gene41151.t1 MTR_5g015490 25.916 382 273 5 355 729 113 491 1.82e-32 132
MS.gene41151.t1 MTR_4g077760 27.473 364 238 9 372 727 209 554 6.08e-32 131
MS.gene41151.t1 MTR_7g109580 28.205 390 257 12 346 727 179 553 2.65e-30 126
MS.gene41151.t1 MTR_5g015950 23.474 426 269 11 353 730 32 448 4.07e-30 124
MS.gene41151.t1 MTR_3g053270 23.474 426 269 11 353 730 32 448 4.07e-30 124
MS.gene41151.t1 MTR_7g057230 25.069 363 251 7 372 728 310 657 4.37e-30 127
MS.gene41151.t1 MTR_5g058860 28.499 393 246 12 357 728 119 497 4.46e-30 125
MS.gene41151.t1 MTR_4g095500 24.344 419 272 9 353 730 56 470 1.16e-29 123
MS.gene41151.t1 MTR_6g047750 25.455 385 260 9 354 727 293 661 4.50e-29 124
MS.gene41151.t1 MTR_1g086970 26.185 401 258 13 346 727 96 477 2.23e-28 119
MS.gene41151.t1 MTR_8g093070 26.895 409 246 17 341 730 124 498 6.80e-28 119
MS.gene41151.t1 MTR_2g099110 25.667 300 213 4 356 654 74 364 5.78e-22 100
MS.gene41151.t1 MTR_0092s0100 22.475 396 286 7 333 727 352 727 3.27e-15 80.1
MS.gene41151.t1 MTR_0092s0100 22.475 396 286 7 333 727 355 730 3.58e-15 80.1
MS.gene41151.t1 MTR_8g020840 24.872 390 226 16 356 714 171 524 5.63e-15 79.0
MS.gene41151.t1 MTR_4g026485 27.536 276 180 7 357 628 270 529 2.58e-14 77.0
MS.gene41151.t1 MTR_3g087300 44.737 76 32 2 310 375 133 208 4.62e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41151.t1 AT1G07530 47.504 701 287 18 90 730 88 767 0.0 578
MS.gene41151.t1 AT2G29060 47.112 658 284 15 82 729 53 656 0.0 557
MS.gene41151.t1 AT2G29060 46.936 669 306 14 82 729 53 693 0.0 553
MS.gene41151.t1 AT2G29065 45.719 654 280 15 90 730 39 630 0.0 533
MS.gene41151.t1 AT1G07520 46.225 649 317 11 90 730 71 695 9.83e-180 530
MS.gene41151.t1 AT1G07520 46.225 649 317 11 90 730 72 696 1.00e-179 530
MS.gene41151.t1 AT1G07520 51.040 529 240 8 208 730 16 531 1.56e-178 521
MS.gene41151.t1 AT1G07520 51.040 529 240 8 208 730 16 531 1.56e-178 521
MS.gene41151.t1 AT2G37650 43.279 677 328 18 77 729 58 702 6.01e-167 497
MS.gene41151.t1 AT2G37650 43.279 677 328 18 77 729 70 714 9.37e-167 497
MS.gene41151.t1 AT3G46600 50.333 451 207 6 280 730 116 549 9.63e-152 453
MS.gene41151.t1 AT3G46600 50.333 451 207 6 280 730 148 581 1.01e-151 454
MS.gene41151.t1 AT5G59450 48.707 464 219 7 275 730 148 600 3.05e-148 446
MS.gene41151.t1 AT3G46600 52.646 378 174 2 353 730 1 373 6.17e-141 419
MS.gene41151.t1 AT2G04890 32.181 376 243 4 352 727 49 412 2.56e-60 209
MS.gene41151.t1 AT1G50600 32.181 376 250 3 352 727 155 525 1.17e-59 210
MS.gene41151.t1 AT1G50600 32.181 376 250 3 352 727 226 596 5.71e-59 210
MS.gene41151.t1 AT1G50600 32.181 376 250 3 352 727 230 600 5.84e-59 210
MS.gene41151.t1 AT5G48150 30.585 376 257 3 352 727 118 489 2.10e-57 203
MS.gene41151.t1 AT5G48150 30.585 376 257 3 352 727 118 489 2.10e-57 203
MS.gene41151.t1 AT5G48150 30.585 376 257 3 352 727 118 489 2.10e-57 203
MS.gene41151.t1 AT5G48150 30.585 376 257 3 352 727 118 489 2.10e-57 203
MS.gene41151.t1 AT1G21450 30.585 376 253 5 354 727 223 592 1.40e-54 198
MS.gene41151.t1 AT4G17230 31.579 380 253 4 351 729 153 526 2.77e-52 190
MS.gene41151.t1 AT4G17230 31.579 380 253 4 351 729 153 526 2.77e-52 190
MS.gene41151.t1 AT1G66350 31.496 381 232 10 351 727 150 505 5.68e-48 177
MS.gene41151.t1 AT1G50420 25.694 432 257 5 353 727 54 478 8.57e-47 173
MS.gene41151.t1 AT3G54220 30.280 393 257 8 338 729 275 651 2.04e-46 176
MS.gene41151.t1 AT2G01570 30.208 384 239 10 351 727 219 580 2.30e-46 174
MS.gene41151.t1 AT1G14920 30.366 382 241 9 351 727 167 528 5.02e-46 172
MS.gene41151.t1 AT3G03450 28.721 383 251 9 351 727 178 544 6.49e-46 172
MS.gene41151.t1 AT5G17490 27.344 384 249 10 351 727 155 515 3.76e-42 161
MS.gene41151.t1 AT5G41920 28.346 381 252 6 350 727 37 399 2.17e-41 156
MS.gene41151.t1 AT5G66770 26.914 405 278 8 328 727 192 583 3.92e-37 147
MS.gene41151.t1 AT1G63100 31.231 333 215 8 352 681 273 594 3.59e-36 145
MS.gene41151.t1 AT1G63100 31.231 333 215 8 352 681 248 569 4.13e-36 145
MS.gene41151.t1 AT5G52510 26.154 390 256 10 354 727 266 639 7.22e-36 144
MS.gene41151.t1 AT4G37650 25.445 393 268 10 355 729 145 530 1.37e-34 139
MS.gene41151.t1 AT3G50650 29.283 321 208 5 365 679 184 491 1.62e-33 136
MS.gene41151.t1 AT3G49950 27.110 391 263 11 353 729 27 409 5.99e-30 123
MS.gene41151.t1 AT1G55580 25.060 419 255 11 353 727 41 444 6.39e-26 112
MS.gene41151.t1 AT4G08250 26.768 396 262 14 346 727 95 476 5.70e-25 109
MS.gene41151.t1 AT3G13840 23.666 431 251 17 326 727 128 509 1.90e-15 80.5

Find 160 sgRNAs with CRISPR-Local

Find 185 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGAATTAATGGACAAATTT+AGG 0.087513 4.1:-36348126 MS.gene41151:CDS
GATGAGATTTAAGAATTTAT+TGG 0.142030 4.1:-36348497 MS.gene41151:CDS
ACCCTCCATATCATTGATTT+TGG 0.161875 4.1:-36348793 MS.gene41151:CDS
TCCATTGAATTCGGAATTAA+TGG 0.174492 4.1:-36348137 MS.gene41151:CDS
AATCAATATGATAGCTTTCT+TGG 0.191887 4.1:-36350038 MS.gene41151:CDS
ATGCCATACCATCGCGTTAT+TGG 0.192133 4.1:-36348582 MS.gene41151:CDS
CATTCTTTGCTACTCGGTTT+AGG 0.207171 4.1:-36348366 MS.gene41151:CDS
AAATGCAGAACCGCGTTTCT+AGG 0.249958 4.1:+36348451 None:intergenic
ATTCTTTGCTACTCGGTTTA+GGG 0.268714 4.1:-36348365 MS.gene41151:CDS
CTCCCTAGCCATATCCAAAT+TGG 0.279685 4.1:+36349443 None:intergenic
ATCAGAGTTATGAATATCTA+AGG 0.292408 4.1:+36349773 None:intergenic
TGAATCATCCAATTTGGATA+TGG 0.292680 4.1:-36349451 MS.gene41151:CDS
TATCTAAGGGGTGTTGATTA+GGG 0.313284 4.1:+36349787 None:intergenic
ATATCTAAGGGGTGTTGATT+AGG 0.323460 4.1:+36349786 None:intergenic
TGCCATACCATCGCGTTATT+GGG 0.330847 4.1:-36348581 MS.gene41151:CDS
ACTCTATCCCGGTGATCTTC+AGG 0.333841 4.1:+36348701 None:intergenic
CAAGCAGCTTCCATTGAATT+CGG 0.338286 4.1:-36348146 MS.gene41151:CDS
GGATACCAAAATCAATGATA+TGG 0.351602 4.1:+36348788 None:intergenic
TTTGTTCAGTCGGTTGTTAA+TGG 0.356635 4.1:-36348403 MS.gene41151:CDS
CGAGTCTTCCCTCCATTTGA+TGG 0.357746 4.1:+36349183 None:intergenic
AGAAAGCTATCATATTGATT+TGG 0.360772 4.1:+36350041 None:intergenic
CTTCCCTATAGAAGGTTATA+TGG 0.365695 4.1:-36349985 MS.gene41151:CDS
TTTATATGCTTCCACATGTT+GGG 0.369926 4.1:-36348020 MS.gene41151:CDS
CATATAAACAGTGGCAGGTT+AGG 0.372839 4.1:-36348186 MS.gene41151:CDS
TGATCAGAAACAGGAGTATC+AGG 0.375983 4.1:+36349681 None:intergenic
ATTGCTATTGCTGTTGCTGC+TGG 0.378194 4.1:+36349743 None:intergenic
GGCCTTGAGGCACGCCTTGT+CGG 0.379088 4.1:-36348982 MS.gene41151:CDS
TTAGTGACTTGAGGAAAGTT+TGG 0.384039 4.1:+36350173 None:intergenic
ATTAGCATTCCTGTTGTCAT+TGG 0.384143 4.1:+36349083 None:intergenic
CGCCTTGTCGGCGATGGTAC+TGG 0.387590 4.1:-36348970 MS.gene41151:CDS
TAGTGATGGACTCAGAGATT+TGG 0.396758 4.1:-36349598 MS.gene41151:CDS
AGAGAATCTGTTTGTGTTGA+AGG 0.397490 4.1:-36349418 MS.gene41151:CDS
ATCCCGGTGATCTTCAGGTT+TGG 0.401423 4.1:+36348706 None:intergenic
AGAAAGCTATCATATTCATT+TGG 0.404865 4.1:+36350074 None:intergenic
ATTATCAGAGATGTTTGATA+AGG 0.416031 4.1:-36349289 MS.gene41151:CDS
AGGTAGCTATCATATTGATT+TGG 0.419337 4.1:+36350107 None:intergenic
TGCCACTGTTTATATGTCTC+TGG 0.420951 4.1:+36348193 None:intergenic
TCCATTAATTCCGAATTCAA+TGG 0.422266 4.1:+36348136 None:intergenic
GCCACTACCTTCCCTATAGA+AGG 0.428776 4.1:-36349993 MS.gene41151:CDS
AACAGGAGTATCAGGTGAAA+GGG 0.430936 4.1:+36349689 None:intergenic
GAGGCCATATAACCTTCTAT+AGG 0.431388 4.1:+36349981 None:intergenic
ATGAGCTACTGAAGCAGATT+AGG 0.435797 4.1:-36349062 MS.gene41151:CDS
AGGCAACATTCTTCACCCTC+TGG 0.447707 4.1:-36349042 MS.gene41151:CDS
CTGTATATGCCAATGACAAC+AGG 0.450042 4.1:-36349092 MS.gene41151:CDS
AGAATGAAACAATAGATTTG+AGG 0.453249 4.1:-36349140 MS.gene41151:CDS
GGCAACATTCTTCACCCTCT+GGG 0.453926 4.1:-36349041 MS.gene41151:CDS
ATGGAAAGAATCGAAGAAAC+TGG 0.455010 4.1:-36348655 MS.gene41151:CDS
ATTTCTCAACCTCATTCTAC+TGG 0.458162 4.1:-36349624 MS.gene41151:CDS
TTTCTTGGTGCTGATCCACT+TGG 0.459039 4.1:-36350023 MS.gene41151:CDS
GTTTCTTCGATTCTTTCCAT+TGG 0.459734 4.1:+36348658 None:intergenic
TTCAAGAAAAGTTTAGAAGA+AGG 0.460061 4.1:-36349516 MS.gene41151:CDS
AGGCCATATAACCTTCTATA+GGG 0.460382 4.1:+36349982 None:intergenic
ATTCGCCATTCTTTGCTACT+CGG 0.460384 4.1:-36348372 MS.gene41151:CDS
AGGTTATATGGCCTCGGCGA+CGG 0.474767 4.1:-36349973 MS.gene41151:CDS
GACAACAATTGGATGCTTCA+AGG 0.476004 4.1:-36348058 MS.gene41151:CDS
GGGATAGAGTTCCCTTTACC+TGG 0.477006 4.1:-36348688 MS.gene41151:CDS
GTAGAGATCCTCTTGGTGTT+CGG 0.479560 4.1:+36348925 None:intergenic
TCAAAACCAGTCAAGATTTG+AGG 0.481231 4.1:+36349471 None:intergenic
TGATTAACATGATCAGAAAC+AGG 0.483590 4.1:+36349672 None:intergenic
GAGGAGTCACCTCCATCAAA+TGG 0.486751 4.1:-36349195 MS.gene41151:CDS
CCGCAGCCTCAAATCTTGAC+TGG 0.488575 4.1:-36349477 MS.gene41151:CDS
GAATGAGGTTGAGAAATAGC+AGG 0.490215 4.1:+36349630 None:intergenic
TTGGCTCATTACTTTGCCAA+TGG 0.490767 4.1:-36349003 MS.gene41151:CDS
TTGGACGAAAACCAGGTAAA+GGG 0.491920 4.1:+36348677 None:intergenic
ACAATTGGATGCTTCAAGGT+TGG 0.492282 4.1:-36348054 MS.gene41151:CDS
GGGTGTTGATTAGGGGAAAG+AGG 0.492324 4.1:+36349795 None:intergenic
GAGAATCTGTTTGTGTTGAA+GGG 0.493199 4.1:-36349417 MS.gene41151:CDS
CTTTCCATTGGACGAAAACC+AGG 0.495527 4.1:+36348670 None:intergenic
CTGTCATTTGCAAGCTAAGT+GGG 0.500777 4.1:+36349856 None:intergenic
CCTCAAGTCACTAACCACTT+TGG 0.500977 4.1:-36350164 MS.gene41151:CDS
TTGGCCACTGAAAACCATAT+AGG 0.503360 4.1:+36348767 None:intergenic
TGGGGATGGACCACAGAGGT+TGG 0.505585 4.1:-36349022 MS.gene41151:CDS
CCGGTGATCTTCAGGTTTGG+AGG 0.507786 4.1:+36348709 None:intergenic
TTCCCAATAACGCGATGGTA+TGG 0.510255 4.1:+36348579 None:intergenic
AAGGCGTGCCTCAAGGCCAT+TGG 0.511609 4.1:+36348987 None:intergenic
CATCCAATTTGGATATGGCT+AGG 0.513403 4.1:-36349446 MS.gene41151:CDS
TATAGAAGGTTATATGGCCT+CGG 0.515236 4.1:-36349979 MS.gene41151:CDS
CATTCTTCACCCTCTGGGGA+TGG 0.516297 4.1:-36349036 MS.gene41151:CDS
TTGGGAAACAATTCGAGTTG+AGG 0.525214 4.1:-36348563 MS.gene41151:CDS
CGCCGACAAGGCGTGCCTCA+AGG 0.525318 4.1:+36348980 None:intergenic
ATTCATTTGGATCAGCATCA+AGG 0.527139 4.1:+36350087 None:intergenic
GGATTCTTCTATTACACAGA+TGG 0.528072 4.1:-36349577 MS.gene41151:CDS
GGTATGGCATTAAACTCAAA+GGG 0.528598 4.1:+36348595 None:intergenic
ATTGGACGAAAACCAGGTAA+AGG 0.530391 4.1:+36348676 None:intergenic
CATTAAACTCAAAGGGAACA+TGG 0.533197 4.1:+36348602 None:intergenic
GAAAATGATTGCTTGCAGAA+TGG 0.533837 4.1:-36349231 MS.gene41151:CDS
AATGAGGTTGAGAAATAGCA+GGG 0.534181 4.1:+36349631 None:intergenic
TACCACGCGAAAACAAATAC+AGG 0.534979 4.1:-36348294 MS.gene41151:CDS
CTAAACCGAGTAGCAAAGAA+TGG 0.536096 4.1:+36348367 None:intergenic
CAGGTTAGGAATACAAGAGC+TGG 0.537591 4.1:-36348172 MS.gene41151:CDS
AAACAGGAGTATCAGGTGAA+AGG 0.542644 4.1:+36349688 None:intergenic
GCAGAATGGACAAGTGAAAA+CGG 0.543482 4.1:-36349217 MS.gene41151:CDS
CTCCAGTACCATCGCCGACA+AGG 0.546196 4.1:+36348968 None:intergenic
TTAGATATTCATAACTCTGA+TGG 0.546938 4.1:-36349771 MS.gene41151:CDS
GTTCATAAACCAAATCCTGA+TGG 0.550468 4.1:-36349910 MS.gene41151:CDS
AGAGACATATAAACAGTGGC+AGG 0.551226 4.1:-36348191 MS.gene41151:CDS
TCAGAGTTATGAATATCTAA+GGG 0.551258 4.1:+36349774 None:intergenic
ACTAACCACTTTGGTCAAGA+AGG 0.551949 4.1:-36350155 MS.gene41151:CDS
TACCAAAATCAATGATATGG+AGG 0.553791 4.1:+36348791 None:intergenic
CTCCAAACCTGAAGATCACC+GGG 0.554977 4.1:-36348708 MS.gene41151:CDS
TGGTATGGCATTAAACTCAA+AGG 0.555962 4.1:+36348594 None:intergenic
AGGTAAAGGGAACTCTATCC+CGG 0.560031 4.1:+36348690 None:intergenic
CCTCCAAACCTGAAGATCAC+CGG 0.561178 4.1:-36348709 MS.gene41151:CDS
CCAAAGTGGTTAGTGACTTG+AGG 0.561864 4.1:+36350164 None:intergenic
CCAGTCAAGATTTGAGGCTG+CGG 0.561996 4.1:+36349477 None:intergenic
AAATCAGTGTCTTCGAGGGA+AGG 0.562271 4.1:+36349948 None:intergenic
GAGGCACGCCTTGTCGGCGA+TGG 0.563864 4.1:-36348976 MS.gene41151:CDS
TCTGTCATTTGCAAGCTAAG+TGG 0.564137 4.1:+36349855 None:intergenic
ATCCAATTTGGATATGGCTA+GGG 0.564149 4.1:-36349445 MS.gene41151:CDS
ATGAACGTTGTAGCTTGTGA+AGG 0.570356 4.1:-36348235 MS.gene41151:CDS
CATTCTACTGGTGTTAGTGA+TGG 0.570556 4.1:-36349612 MS.gene41151:CDS
CATATAACCTTCTATAGGGA+AGG 0.576430 4.1:+36349986 None:intergenic
TGGATGCTTCAAGGTTGGAA+AGG 0.577566 4.1:-36348049 MS.gene41151:CDS
TGAATATGATAGCTTTCTTG+AGG 0.577796 4.1:-36350069 MS.gene41151:CDS
TCTTGGTGTTCGGAGAGGAA+TGG 0.578017 4.1:+36348935 None:intergenic
TACTCCCTTCTTGACCAAAG+TGG 0.580662 4.1:+36350150 None:intergenic
CTCAGCAGTAGAGATCCTCT+TGG 0.580706 4.1:+36348918 None:intergenic
ACCTTCTATAGGGAAGGTAG+TGG 0.581330 4.1:+36349992 None:intergenic
CAATTTGGATATGGCTAGGG+AGG 0.586371 4.1:-36349442 MS.gene41151:CDS
CTTTGCTACTCGGTTTAGGG+AGG 0.589247 4.1:-36348362 MS.gene41151:CDS
GTGATGTGAGTTGATTATGC+TGG 0.591556 4.1:+36347995 None:intergenic
ATGGAAGCGCTTGCAATAGT+CGG 0.593097 4.1:+36348621 None:intergenic
GTCAAGATTTGAGGCTGCGG+AGG 0.593242 4.1:+36349480 None:intergenic
TTACTTTGCCAATGGCCTTG+AGG 0.593344 4.1:-36348995 MS.gene41151:CDS
CTAACCACTTTGGTCAAGAA+GGG 0.596865 4.1:-36350154 MS.gene41151:CDS
AAACAAATACAGGATGCTGA+TGG 0.598030 4.1:-36348284 MS.gene41151:CDS
AAGACTCGTCGTAAGAAACA+AGG 0.598350 4.1:-36349168 MS.gene41151:CDS
CTCTGTGGTCCATCCCCAGA+GGG 0.598960 4.1:+36349027 None:intergenic
ATCTAAGGGGTGTTGATTAG+GGG 0.605109 4.1:+36349788 None:intergenic
ACCAAAATCAATGATATGGA+GGG 0.610467 4.1:+36348792 None:intergenic
AAGCTAAGTGGGTCATAGAA+CGG 0.617850 4.1:+36349867 None:intergenic
ATACAGGATGCTGATGGAGA+GGG 0.620955 4.1:-36348278 MS.gene41151:CDS
ATTGTTTCCCAATAACGCGA+TGG 0.623674 4.1:+36348574 None:intergenic
GTCTTCCCTCCATTTGATGG+AGG 0.626646 4.1:+36349186 None:intergenic
GAGTCACCTCCATCAAATGG+AGG 0.628730 4.1:-36349192 MS.gene41151:CDS
TCACTAACACCAGTAGAATG+AGG 0.628786 4.1:+36349615 None:intergenic
AGCTATTAGTGCTGTTGATG+AGG 0.631843 4.1:-36349316 MS.gene41151:CDS
AATACAGGATGCTGATGGAG+AGG 0.637418 4.1:-36348279 MS.gene41151:CDS
ACAGGAGTATCAGGTGAAAG+GGG 0.642453 4.1:+36349690 None:intergenic
ATTCCTCTCCGAACACCAAG+AGG 0.643154 4.1:-36348933 MS.gene41151:CDS
AGTCACCTCCATCAAATGGA+GGG 0.643984 4.1:-36349191 MS.gene41151:CDS
CCTCTGTGGTCCATCCCCAG+AGG 0.644825 4.1:+36349026 None:intergenic
GCAACATTCTTCACCCTCTG+GGG 0.646104 4.1:-36349040 MS.gene41151:CDS
TGGTCAAGAAGGGAGTATAG+TGG 0.646620 4.1:-36350144 MS.gene41151:CDS
TTATGCTGGCACCCAACATG+TGG 0.647174 4.1:+36348009 None:intergenic
AAGGTTTAGAGAGAGTTGAG+AGG 0.649221 4.1:-36348216 MS.gene41151:CDS
ATGAGGTTGAGAAATAGCAG+GGG 0.658762 4.1:+36349632 None:intergenic
GATCCTCTTGGTGTTCGGAG+AGG 0.659641 4.1:+36348930 None:intergenic
GGCCAGAGACATATAAACAG+TGG 0.660113 4.1:-36348195 MS.gene41151:CDS
CAATAGCAATAGCAGCGTCG+AGG 0.672364 4.1:-36349730 MS.gene41151:CDS
CAGAGTTATGAATATCTAAG+GGG 0.672632 4.1:+36349775 None:intergenic
CTGATGGAGAGGGAAAGTAC+AGG 0.681920 4.1:-36348268 MS.gene41151:CDS
AAGTAATGAGCCAACCTCTG+TGG 0.682694 4.1:+36349012 None:intergenic
GAGGGAAGGATCCGTCGCCG+AGG 0.685761 4.1:+36349962 None:intergenic
TCTTAAAATCAAGAGCAATG+AGG 0.688807 4.1:-36348539 MS.gene41151:CDS
GTAGTGGCTGCAAAACCAAG+TGG 0.695952 4.1:+36350008 None:intergenic
AGACTCGTCGTAAGAAACAA+GGG 0.706908 4.1:-36349167 MS.gene41151:CDS
AGCGAACAGTCCTAGAAACG+CGG 0.739727 4.1:-36348461 MS.gene41151:CDS
GAATGGACAAGTGAAAACGG+AGG 0.763230 4.1:-36349214 MS.gene41151:CDS
CCTCTGGGGATGGACCACAG+AGG 0.797161 4.1:-36349026 MS.gene41151:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATAAAAACTTTATAAGTAT+TGG + chr4.1:36349443-36349462 None:intergenic 15.0%
!! GATGAGATTTAAGAATTTAT+TGG - chr4.1:36349691-36349710 MS.gene41151:CDS 20.0%
!!! TTCTAAACTTTTCTTGAATA+GGG + chr4.1:36348670-36348689 None:intergenic 20.0%
! AATCAATATGATAGCTTTCT+TGG - chr4.1:36348150-36348169 MS.gene41151:CDS 25.0%
! AGAAAGCTATCATATTCATT+TGG + chr4.1:36348117-36348136 None:intergenic 25.0%
! AGAATGAAACAATAGATTTG+AGG - chr4.1:36349048-36349067 MS.gene41151:CDS 25.0%
! ATCAGAGTTATGAATATCTA+AGG + chr4.1:36348418-36348437 None:intergenic 25.0%
! ATTATCAGAGATGTTTGATA+AGG - chr4.1:36348899-36348918 MS.gene41151:CDS 25.0%
! TCAGAGTTATGAATATCTAA+GGG + chr4.1:36348417-36348436 None:intergenic 25.0%
! TTAGATATTCATAACTCTGA+TGG - chr4.1:36348417-36348436 MS.gene41151:CDS 25.0%
! TTCAAGAAAAGTTTAGAAGA+AGG - chr4.1:36348672-36348691 MS.gene41151:CDS 25.0%
!! AAGTATGCAAACTTTTTGAA+AGG + chr4.1:36349332-36349351 None:intergenic 25.0%
!! AAGTTTTTATCAGATAGAGA+AGG - chr4.1:36349452-36349471 MS.gene41151:CDS 25.0%
!! AGAAAGCTATCATATTGATT+TGG + chr4.1:36348150-36348169 None:intergenic 25.0%
!! CTTCTAAACTTTTCTTGAAT+AGG + chr4.1:36348671-36348690 None:intergenic 25.0%
!! TTTTTGATGTAGACAACAAT+TGG - chr4.1:36350119-36350138 MS.gene41151:CDS 25.0%
!!! ATTGATTTTGGTATCCTATA+TGG - chr4.1:36349407-36349426 MS.gene41151:CDS 25.0%
ACCAAAATCAATGATATGGA+GGG + chr4.1:36349399-36349418 None:intergenic 30.0%
CAGAGTTATGAATATCTAAG+GGG + chr4.1:36348416-36348435 None:intergenic 30.0%
CATCAAAAACAAAGTCTTTG+TGG + chr4.1:36350108-36350127 None:intergenic 30.0%
GGATACCAAAATCAATGATA+TGG + chr4.1:36349403-36349422 None:intergenic 30.0%
TACCAAAATCAATGATATGG+AGG + chr4.1:36349400-36349419 None:intergenic 30.0%
TCCATTAATTCCGAATTCAA+TGG + chr4.1:36350055-36350074 None:intergenic 30.0%
TCCATTGAATTCGGAATTAA+TGG - chr4.1:36350051-36350070 MS.gene41151:CDS 30.0%
TCTTAAAATCAAGAGCAATG+AGG - chr4.1:36349649-36349668 MS.gene41151:CDS 30.0%
TGAATATGATAGCTTTCTTG+AGG - chr4.1:36348119-36348138 MS.gene41151:CDS 30.0%
TGAATCATCCAATTTGGATA+TGG - chr4.1:36348737-36348756 MS.gene41151:CDS 30.0%
TGATTAACATGATCAGAAAC+AGG + chr4.1:36348519-36348538 None:intergenic 30.0%
TTTATATGCTTCCACATGTT+GGG - chr4.1:36350168-36350187 MS.gene41151:CDS 30.0%
! AGGTAGCTATCATATTGATT+TGG + chr4.1:36348084-36348103 None:intergenic 30.0%
! CAATCATTTTCATTGCATAG+TGG + chr4.1:36348948-36348967 None:intergenic 30.0%
! CGGAATTAATGGACAAATTT+AGG - chr4.1:36350062-36350081 MS.gene41151:CDS 30.0%
! TGATAAGGTTTTGCTTAATG+TGG - chr4.1:36348914-36348933 MS.gene41151:CDS 30.0%
! TTTTATATGCTTCCACATGT+TGG - chr4.1:36350167-36350186 MS.gene41151:CDS 30.0%
! TTTTTATCAGATAGAGAAGG+TGG - chr4.1:36349455-36349474 MS.gene41151:CDS 30.0%
!!! TGGTTTTGAATCATCCAATT+TGG - chr4.1:36348731-36348750 MS.gene41151:CDS 30.0%
AAACAAATACAGGATGCTGA+TGG - chr4.1:36349904-36349923 MS.gene41151:CDS 35.0%
AACAAGAAGAAGAAGAAGCT+TGG - chr4.1:36348832-36348851 MS.gene41151:CDS 35.0%
AATGAGGTTGAGAAATAGCA+GGG + chr4.1:36348560-36348579 None:intergenic 35.0%
AGAGAATCTGTTTGTGTTGA+AGG - chr4.1:36348770-36348789 MS.gene41151:CDS 35.0%
AGGCCATATAACCTTCTATA+GGG + chr4.1:36348209-36348228 None:intergenic 35.0%
ATCCAATTTGGATATGGCTA+GGG - chr4.1:36348743-36348762 MS.gene41151:CDS 35.0%
ATGGAAAGAATCGAAGAAAC+TGG - chr4.1:36349533-36349552 MS.gene41151:CDS 35.0%
ATTAGCATTCCTGTTGTCAT+TGG + chr4.1:36349108-36349127 None:intergenic 35.0%
ATTCATTTGGATCAGCATCA+AGG + chr4.1:36348104-36348123 None:intergenic 35.0%
ATTCTTTGCTACTCGGTTTA+GGG - chr4.1:36349823-36349842 MS.gene41151:CDS 35.0%
ATTTCTCAACCTCATTCTAC+TGG - chr4.1:36348564-36348583 MS.gene41151:CDS 35.0%
CATATAACCTTCTATAGGGA+AGG + chr4.1:36348205-36348224 None:intergenic 35.0%
CATTAAACTCAAAGGGAACA+TGG + chr4.1:36349589-36349608 None:intergenic 35.0%
CTTCCCTATAGAAGGTTATA+TGG - chr4.1:36348203-36348222 MS.gene41151:CDS 35.0%
CTTCTTCTTCTTCTTGTTCT+TGG + chr4.1:36348830-36348849 None:intergenic 35.0%
GAAAATGATTGCTTGCAGAA+TGG - chr4.1:36348957-36348976 MS.gene41151:CDS 35.0%
GAGAATCTGTTTGTGTTGAA+GGG - chr4.1:36348771-36348790 MS.gene41151:CDS 35.0%
GGATTCTTCTATTACACAGA+TGG - chr4.1:36348611-36348630 MS.gene41151:CDS 35.0%
GGTATGGCATTAAACTCAAA+GGG + chr4.1:36349596-36349615 None:intergenic 35.0%
GTTCATAAACCAAATCCTGA+TGG - chr4.1:36348278-36348297 MS.gene41151:CDS 35.0%
GTTTCTTCGATTCTTTCCAT+TGG + chr4.1:36349533-36349552 None:intergenic 35.0%
TATAGAAGGTTATATGGCCT+CGG - chr4.1:36348209-36348228 MS.gene41151:CDS 35.0%
TCAAAACCAGTCAAGATTTG+AGG + chr4.1:36348720-36348739 None:intergenic 35.0%
TGAAAAATCAGTGTCTTCGA+GGG + chr4.1:36348247-36348266 None:intergenic 35.0%
TGGTATGGCATTAAACTCAA+AGG + chr4.1:36349597-36349616 None:intergenic 35.0%
TTAGTGACTTGAGGAAAGTT+TGG + chr4.1:36348018-36348037 None:intergenic 35.0%
TTTGTTCAGTCGGTTGTTAA+TGG - chr4.1:36349785-36349804 MS.gene41151:CDS 35.0%
! CATTTTCTTCCATCAGGATT+TGG + chr4.1:36348290-36348309 None:intergenic 35.0%
! GATCAACATTTTCTTCCATC+AGG + chr4.1:36348296-36348315 None:intergenic 35.0%
! GTATCCTATATGGTTTTCAG+TGG - chr4.1:36349417-36349436 MS.gene41151:CDS 35.0%
!! ATATCTAAGGGGTGTTGATT+AGG + chr4.1:36348405-36348424 None:intergenic 35.0%
!! TATCTAAGGGGTGTTGATTA+GGG + chr4.1:36348404-36348423 None:intergenic 35.0%
!!! ACCCTCCATATCATTGATTT+TGG - chr4.1:36349395-36349414 MS.gene41151:CDS 35.0%
!!! GACACTGATTTTTCAGATAC+TGG - chr4.1:36348252-36348271 MS.gene41151:CDS 35.0%
AAGACTCGTCGTAAGAAACA+AGG - chr4.1:36349020-36349039 MS.gene41151:CDS 40.0%
AAGCTAAGTGGGTCATAGAA+CGG + chr4.1:36348324-36348343 None:intergenic 40.0%
AAGGTTTAGAGAGAGTTGAG+AGG - chr4.1:36349972-36349991 MS.gene41151:CDS 40.0%
ACAATTGGATGCTTCAAGGT+TGG - chr4.1:36350134-36350153 MS.gene41151:CDS 40.0%
ACCGACTGAACAAAAATAGC+AGG + chr4.1:36349779-36349798 None:intergenic 40.0%
ACTAACCACTTTGGTCAAGA+AGG - chr4.1:36348033-36348052 MS.gene41151:CDS 40.0%
AGACTCGTCGTAAGAAACAA+GGG - chr4.1:36349021-36349040 MS.gene41151:CDS 40.0%
AGAGACATATAAACAGTGGC+AGG - chr4.1:36349997-36350016 MS.gene41151:CDS 40.0%
ATGAGCTACTGAAGCAGATT+AGG - chr4.1:36349126-36349145 MS.gene41151:CDS 40.0%
ATGAGGTTGAGAAATAGCAG+GGG + chr4.1:36348559-36348578 None:intergenic 40.0%
ATTCGCCATTCTTTGCTACT+CGG - chr4.1:36349816-36349835 MS.gene41151:CDS 40.0%
ATTGGACGAAAACCAGGTAA+AGG + chr4.1:36349515-36349534 None:intergenic 40.0%
ATTGTTTCCCAATAACGCGA+TGG + chr4.1:36349617-36349636 None:intergenic 40.0%
CAAGCAGCTTCCATTGAATT+CGG - chr4.1:36350042-36350061 MS.gene41151:CDS 40.0%
CATATAAACAGTGGCAGGTT+AGG - chr4.1:36350002-36350021 MS.gene41151:CDS 40.0%
CATCCAATTTGGATATGGCT+AGG - chr4.1:36348742-36348761 MS.gene41151:CDS 40.0%
CATTCTTTGCTACTCGGTTT+AGG - chr4.1:36349822-36349841 MS.gene41151:CDS 40.0%
CCGACTGAACAAAAATAGCA+GGG + chr4.1:36349778-36349797 None:intergenic 40.0%
CTAAACCGAGTAGCAAAGAA+TGG + chr4.1:36349824-36349843 None:intergenic 40.0%
CTAACCACTTTGGTCAAGAA+GGG - chr4.1:36348034-36348053 MS.gene41151:CDS 40.0%
CTGAAAAATCAGTGTCTTCG+AGG + chr4.1:36348248-36348267 None:intergenic 40.0%
CTGTATATGCCAATGACAAC+AGG - chr4.1:36349096-36349115 MS.gene41151:CDS 40.0%
GAATGAGGTTGAGAAATAGC+AGG + chr4.1:36348561-36348580 None:intergenic 40.0%
GACAACAATTGGATGCTTCA+AGG - chr4.1:36350130-36350149 MS.gene41151:CDS 40.0%
GAGGCCATATAACCTTCTAT+AGG + chr4.1:36348210-36348229 None:intergenic 40.0%
GCAGAATGGACAAGTGAAAA+CGG - chr4.1:36348971-36348990 MS.gene41151:CDS 40.0%
TACCACGCGAAAACAAATAC+AGG - chr4.1:36349894-36349913 MS.gene41151:CDS 40.0%
TCACTAACACCAGTAGAATG+AGG + chr4.1:36348576-36348595 None:intergenic 40.0%
TGCCACTGTTTATATGTCTC+TGG + chr4.1:36349998-36350017 None:intergenic 40.0%
TTGGACGAAAACCAGGTAAA+GGG + chr4.1:36349514-36349533 None:intergenic 40.0%
TTGGCCACTGAAAACCATAT+AGG + chr4.1:36349424-36349443 None:intergenic 40.0%
TTGGCTCATTACTTTGCCAA+TGG - chr4.1:36349185-36349204 MS.gene41151:CDS 40.0%
! AGCTATTAGTGCTGTTGATG+AGG - chr4.1:36348872-36348891 MS.gene41151:CDS 40.0%
! ATGAACGTTGTAGCTTGTGA+AGG - chr4.1:36349953-36349972 MS.gene41151:CDS 40.0%
! CATTCTACTGGTGTTAGTGA+TGG - chr4.1:36348576-36348595 MS.gene41151:CDS 40.0%
! CTGTCATTTGCAAGCTAAGT+GGG + chr4.1:36348335-36348354 None:intergenic 40.0%
! TCTGTCATTTGCAAGCTAAG+TGG + chr4.1:36348336-36348355 None:intergenic 40.0%
!! AAACAGGAGTATCAGGTGAA+AGG + chr4.1:36348503-36348522 None:intergenic 40.0%
!! AACAGGAGTATCAGGTGAAA+GGG + chr4.1:36348502-36348521 None:intergenic 40.0%
!! ATCCTGTATTTGTTTTCGCG+TGG + chr4.1:36349899-36349918 None:intergenic 40.0%
!! ATCTAAGGGGTGTTGATTAG+GGG + chr4.1:36348403-36348422 None:intergenic 40.0%
!! TAGTGATGGACTCAGAGATT+TGG - chr4.1:36348590-36348609 MS.gene41151:CDS 40.0%
!! TGATCAGAAACAGGAGTATC+AGG + chr4.1:36348510-36348529 None:intergenic 40.0%
!! TTGGGAAACAATTCGAGTTG+AGG - chr4.1:36349625-36349644 MS.gene41151:CDS 40.0%
!! TTTACCTGGTTTTCGTCCAA+TGG - chr4.1:36349514-36349533 MS.gene41151:CDS 40.0%
!!! CCCTGCTATTTTTGTTCAGT+CGG - chr4.1:36349775-36349794 MS.gene41151:CDS 40.0%
AAATCAGTGTCTTCGAGGGA+AGG + chr4.1:36348243-36348262 None:intergenic 45.0%
AAATGCAGAACCGCGTTTCT+AGG + chr4.1:36349740-36349759 None:intergenic 45.0%
AAGTAATGAGCCAACCTCTG+TGG + chr4.1:36349179-36349198 None:intergenic 45.0%
AATACAGGATGCTGATGGAG+AGG - chr4.1:36349909-36349928 MS.gene41151:CDS 45.0%
ACCTTCTATAGGGAAGGTAG+TGG + chr4.1:36348199-36348218 None:intergenic 45.0%
AGGTAAAGGGAACTCTATCC+CGG + chr4.1:36349501-36349520 None:intergenic 45.0%
AGTCACCTCCATCAAATGGA+GGG - chr4.1:36348997-36349016 MS.gene41151:CDS 45.0%
ATACAGGATGCTGATGGAGA+GGG - chr4.1:36349910-36349929 MS.gene41151:CDS 45.0%
ATGCCATACCATCGCGTTAT+TGG - chr4.1:36349606-36349625 MS.gene41151:CDS 45.0%
CAATTTGGATATGGCTAGGG+AGG - chr4.1:36348746-36348765 MS.gene41151:CDS 45.0%
CAGGTTAGGAATACAAGAGC+TGG - chr4.1:36350016-36350035 MS.gene41151:CDS 45.0%
CCAAAGTGGTTAGTGACTTG+AGG + chr4.1:36348027-36348046 None:intergenic 45.0%
CCTCAAGTCACTAACCACTT+TGG - chr4.1:36348024-36348043 MS.gene41151:CDS 45.0%
CTCCCTAGCCATATCCAAAT+TGG + chr4.1:36348748-36348767 None:intergenic 45.0%
CTTTCCATTGGACGAAAACC+AGG + chr4.1:36349521-36349540 None:intergenic 45.0%
GAATGGACAAGTGAAAACGG+AGG - chr4.1:36348974-36348993 MS.gene41151:CDS 45.0%
GGCCAGAGACATATAAACAG+TGG - chr4.1:36349993-36350012 MS.gene41151:CDS 45.0%
TACTCCCTTCTTGACCAAAG+TGG + chr4.1:36348041-36348060 None:intergenic 45.0%
TGCCATACCATCGCGTTATT+GGG - chr4.1:36349607-36349626 MS.gene41151:CDS 45.0%
TGGATGCTTCAAGGTTGGAA+AGG - chr4.1:36350139-36350158 MS.gene41151:CDS 45.0%
TTCCCAATAACGCGATGGTA+TGG + chr4.1:36349612-36349631 None:intergenic 45.0%
! ATTGCTATTGCTGTTGCTGC+TGG + chr4.1:36348448-36348467 None:intergenic 45.0%
! TGGTCAAGAAGGGAGTATAG+TGG - chr4.1:36348044-36348063 MS.gene41151:CDS 45.0%
! TTACTTTGCCAATGGCCTTG+AGG - chr4.1:36349193-36349212 MS.gene41151:CDS 45.0%
!! ACAGGAGTATCAGGTGAAAG+GGG + chr4.1:36348501-36348520 None:intergenic 45.0%
!! ATGGAAGCGCTTGCAATAGT+CGG + chr4.1:36349570-36349589 None:intergenic 45.0%
!! GTAGAGATCCTCTTGGTGTT+CGG + chr4.1:36349266-36349285 None:intergenic 45.0%
!! TTTCTTGGTGCTGATCCACT+TGG - chr4.1:36348165-36348184 MS.gene41151:CDS 45.0%
ACTCTATCCCGGTGATCTTC+AGG + chr4.1:36349490-36349509 None:intergenic 50.0%
AGCGAACAGTCCTAGAAACG+CGG - chr4.1:36349727-36349746 MS.gene41151:CDS 50.0%
AGGCAACATTCTTCACCCTC+TGG - chr4.1:36349146-36349165 MS.gene41151:CDS 50.0%
ATTCCTCTCCGAACACCAAG+AGG - chr4.1:36349255-36349274 MS.gene41151:CDS 50.0%
CAATAGCAATAGCAGCGTCG+AGG - chr4.1:36348458-36348477 MS.gene41151:CDS 50.0%
CCTCCAAACCTGAAGATCAC+CGG - chr4.1:36349479-36349498 MS.gene41151:CDS 50.0%
CGAGTCTTCCCTCCATTTGA+TGG + chr4.1:36349008-36349027 None:intergenic 50.0%
CTCAGCAGTAGAGATCCTCT+TGG + chr4.1:36349273-36349292 None:intergenic 50.0%
CTCCAAACCTGAAGATCACC+GGG - chr4.1:36349480-36349499 MS.gene41151:CDS 50.0%
CTTTGCTACTCGGTTTAGGG+AGG - chr4.1:36349826-36349845 MS.gene41151:CDS 50.0%
GAGGAGTCACCTCCATCAAA+TGG - chr4.1:36348993-36349012 MS.gene41151:CDS 50.0%
GAGTCACCTCCATCAAATGG+AGG - chr4.1:36348996-36349015 MS.gene41151:CDS 50.0%
GCAACATTCTTCACCCTCTG+GGG - chr4.1:36349148-36349167 MS.gene41151:CDS 50.0%
GCCACTACCTTCCCTATAGA+AGG - chr4.1:36348195-36348214 MS.gene41151:CDS 50.0%
GGCAACATTCTTCACCCTCT+GGG - chr4.1:36349147-36349166 MS.gene41151:CDS 50.0%
GGGATAGAGTTCCCTTTACC+TGG - chr4.1:36349500-36349519 MS.gene41151:CDS 50.0%
GTAGTGGCTGCAAAACCAAG+TGG + chr4.1:36348183-36348202 None:intergenic 50.0%
GTCTTCCCTCCATTTGATGG+AGG + chr4.1:36349005-36349024 None:intergenic 50.0%
TTATGCTGGCACCCAACATG+TGG + chr4.1:36350182-36350201 None:intergenic 50.0%
! ATCCCGGTGATCTTCAGGTT+TGG + chr4.1:36349485-36349504 None:intergenic 50.0%
! CCAGTCAAGATTTGAGGCTG+CGG + chr4.1:36348714-36348733 None:intergenic 50.0%
! CTGATGGAGAGGGAAAGTAC+AGG - chr4.1:36349920-36349939 MS.gene41151:CDS 50.0%
!! GGGTGTTGATTAGGGGAAAG+AGG + chr4.1:36348396-36348415 None:intergenic 50.0%
!! TCTTGGTGTTCGGAGAGGAA+TGG + chr4.1:36349256-36349275 None:intergenic 50.0%
AGGTTATATGGCCTCGGCGA+CGG - chr4.1:36348215-36348234 MS.gene41151:CDS 55.0%
CCGCAGCCTCAAATCTTGAC+TGG - chr4.1:36348711-36348730 MS.gene41151:CDS 55.0%
! CATTCTTCACCCTCTGGGGA+TGG - chr4.1:36349152-36349171 MS.gene41151:CDS 55.0%
! CCGGTGATCTTCAGGTTTGG+AGG + chr4.1:36349482-36349501 None:intergenic 55.0%
! GTCAAGATTTGAGGCTGCGG+AGG + chr4.1:36348711-36348730 None:intergenic 55.0%
!! GATCCTCTTGGTGTTCGGAG+AGG + chr4.1:36349261-36349280 None:intergenic 55.0%
AAGGCGTGCCTCAAGGCCAT+TGG + chr4.1:36349204-36349223 None:intergenic 60.0%
CTCCAGTACCATCGCCGACA+AGG + chr4.1:36349223-36349242 None:intergenic 60.0%
CTCTGTGGTCCATCCCCAGA+GGG + chr4.1:36349164-36349183 None:intergenic 60.0%
TGGGGATGGACCACAGAGGT+TGG - chr4.1:36349166-36349185 MS.gene41151:CDS 60.0%
CCTCTGTGGTCCATCCCCAG+AGG + chr4.1:36349165-36349184 None:intergenic 65.0%
CGCCTTGTCGGCGATGGTAC+TGG - chr4.1:36349218-36349237 MS.gene41151:CDS 65.0%
GGCCTTGAGGCACGCCTTGT+CGG - chr4.1:36349206-36349225 MS.gene41151:CDS 65.0%
! CCTCTGGGGATGGACCACAG+AGG - chr4.1:36349162-36349181 MS.gene41151:CDS 65.0%
CGCCGACAAGGCGTGCCTCA+AGG + chr4.1:36349211-36349230 None:intergenic 70.0%
GAGGCACGCCTTGTCGGCGA+TGG - chr4.1:36349212-36349231 MS.gene41151:CDS 70.0%
GAGGGAAGGATCCGTCGCCG+AGG + chr4.1:36348229-36348248 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 36348009 36350201 36348009 ID=MS.gene41151
chr4.1 mRNA 36348009 36350201 36348009 ID=MS.gene41151.t1;Parent=MS.gene41151
chr4.1 exon 36348009 36350201 36348009 ID=MS.gene41151.t1.exon1;Parent=MS.gene41151.t1
chr4.1 CDS 36348009 36350201 36348009 ID=cds.MS.gene41151.t1;Parent=MS.gene41151.t1
Gene Sequence

>MS.gene41151

ATGGATCCAAACTTTCCTCAAGTCACTAACCACTTTGGTCAAGAAGGGAGTATAGTGGTCTCTGAGTTTGATCCAAATCAATATGATAGCTACCTTGATGCTGATCCAAATGAATATGATAGCTTTCTTGAGGCTGATCCAAATCAATATGATAGCTTTCTTGGTGCTGATCCACTTGGTTTTGCAGCCACTACCTTCCCTATAGAAGGTTATATGGCCTCGGCGACGGATCCTTCCCTCGAAGACACTGATTTTTCAGATACTGGTAAGTTCATAAACCAAATCCTGATGGAAGAAAATGTTGATCAGAGACCGTTCTATGACCCACTTAGCTTGCAAATGACAGAAAAATCATTCTATGATGCTCTCTTACACACAAATAAACCTCTTTCCCCTAATCAACACCCCTTAGATATTCATAACTCTGATGGCACAACCAGCAGCAACAGCAATAGCAATAGCAGCGTCGAGGATTCTCGAGAGTTAAAACCCCTTTCACCTGATACTCCTGTTTCTGATCATGTTAATCATGTTTTTCAGTTTAATTCCCCTGCTATTTCTCAACCTCATTCTACTGGTGTTAGTGATGGACTCAGAGATTTGGATTCTTCTATTACACAGATGGCACAAAACATTTTCAGTGATGTAGATTCTGTTTCCCTATTCAAGAAAAGTTTAGAAGAAGGCAACAAGTTTCTTCCTCCGCAGCCTCAAATCTTGACTGGTTTTGAATCATCCAATTTGGATATGGCTAGGGAGGAAGAGAATCTGTTTGTGTTGAAGGGTAGAAAGAATCACAAGCGCGAAGAAAGTTTTAGCCAAGAACAAGAAGAAGAAGAAGCTTGGAGAAGTAGCAAGCAATCAGCTATTAGTGCTGTTGATGAGGATGAATTATCAGAGATGTTTGATAAGGTTTTGCTTAATGTGGAACATTTGCCACTATGCAATGAAAATGATTGCTTGCAGAATGGACAAGTGAAAACGGAGGAGTCACCTCCATCAAATGGAGGGAAGACTCGTCGTAAGAAACAAGGGAAGAAGAATGAAACAATAGATTTGAGGAATCTTCTGCTTATGTGTTCACAATCTGTATATGCCAATGACAACAGGAATGCTAATGAGCTACTGAAGCAGATTAGGCAACATTCTTCACCCTCTGGGGATGGACCACAGAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCCTTGTCGGCGATGGTACTGGAGCACAAACATTCCATTCCTCTCCGAACACCAAGAGGATCTCTACTGCTGAGTTTTTGAAAGCATATCAAGTTCATCTATCTACTAGTCCTTTCAAAAAGTTTGCATACTTCTTTGCAAATAAAATGATTATGAAAGCTTCTGCAAACGCTGAAACCCTCCATATCATTGATTTTGGTATCCTATATGGTTTTCAGTGGCCAATACTTATAAAGTTTTTATCAGATAGAGAAGGTGGACCTCCAAACCTGAAGATCACCGGGATAGAGTTCCCTTTACCTGGTTTTCGTCCAATGGAAAGAATCGAAGAAACTGGTCGTCGTCTTGCCGACTATTGCAAGCGCTTCCATGTTCCCTTTGAGTTTAATGCCATACCATCGCGTTATTGGGAAACAATTCGAGTTGAGGATCTTAAAATCAAGAGCAATGAGGTTGTTGTTGTGAACTCTTTGATGAGATTTAAGAATTTATTGGATGAAAGTATTGAAGCGAACAGTCCTAGAAACGCGGTTCTGCATTTAATCAGAAAGATAAACCCTGCTATTTTTGTTCAGTCGGTTGTTAATGGATCATATAATTCGCCATTCTTTGCTACTCGGTTTAGGGAGGCACTGTTTCATTTTTCTGCTCTTTATGACATGTTTGACACTGTCATACCACGCGAAAACAAATACAGGATGCTGATGGAGAGGGAAAGTACAGGTAGAGAAGCTATGAACGTTGTAGCTTGTGAAGGTTTAGAGAGAGTTGAGAGGCCAGAGACATATAAACAGTGGCAGGTTAGGAATACAAGAGCTGGTTTCAAGCAGCTTCCATTGAATTCGGAATTAATGGACAAATTTAGGACAAAGTTACAGCAATGTTACCACAAAGACTTTGTTTTTGATGTAGACAACAATTGGATGCTTCAAGGTTGGAAAGGACGCATTTTATATGCTTCCACATGTTGGGTGCCAGCATAA
Protein sequence

>MS.gene41151.t1

MDPNFPQVTNHFGQEGSIVVSEFDPNQYDSYLDADPNEYDSFLEADPNQYDSFLGADPLGFAATTFPIEGYMASATDPSLEDTDFSDTGKFINQILMEENVDQRPFYDPLSLQMTEKSFYDALLHTNKPLSPNQHPLDIHNSDGTTSSNSNSNSSVEDSRELKPLSPDTPVSDHVNHVFQFNSPAISQPHSTGVSDGLRDLDSSITQMAQNIFSDVDSVSLFKKSLEEGNKFLPPQPQILTGFESSNLDMAREEENLFVLKGRKNHKREESFSQEQEEEEAWRSSKQSAISAVDEDELSEMFDKVLLNVEHLPLCNENDCLQNGQVKTEESPPSNGGKTRRKKQGKKNETIDLRNLLLMCSQSVYANDNRNANELLKQIRQHSSPSGDGPQRLAHYFANGLEARLVGDGTGAQTFHSSPNTKRISTAEFLKAYQVHLSTSPFKKFAYFFANKMIMKASANAETLHIIDFGILYGFQWPILIKFLSDREGGPPNLKITGIEFPLPGFRPMERIEETGRRLADYCKRFHVPFEFNAIPSRYWETIRVEDLKIKSNEVVVVNSLMRFKNLLDESIEANSPRNAVLHLIRKINPAIFVQSVVNGSYNSPFFATRFREALFHFSALYDMFDTVIPRENKYRMLMERESTGREAMNVVACEGLERVERPETYKQWQVRNTRAGFKQLPLNSELMDKFRTKLQQCYHKDFVFDVDNNWMLQGWKGRILYASTCWVPA