AlfalfaGEDB | MS.gene41152

M. sativa cultivar XinJiangDaYe / MS.gene41152

KEGG: -
GO: -
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41152.t1	XP_003606670.1	94.3	688	30	5	1	681	1	686	0.00E+00	1241.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41152.t1	Q9XE58	53.9	690	275	12	32	681	81	767	3.3e-193	676.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41152.t1	G7JUT7	94.3	688	30	5	1	681	1	686	0.0e+00	1241.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene41152.t1	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene41152.t1	MTR_4g064160	93.023	688	39	5	1	681	1	686	1274
MS.gene41152.t1	MTR_7g062120	48.542	686	320	10	23	681	63	742	634
MS.gene41152.t1	MTR_2g097410	49.030	722	307	18	8	681	35	743	629
MS.gene41152.t1	MTR_4g064150	50.000	680	290	18	25	681	83	735	609
MS.gene41152.t1	MTR_4g064120	48.563	661	280	10	25	681	24	628	598
MS.gene41152.t1	MTR_4g064180	47.958	661	284	9	25	681	24	628	593
MS.gene41152.t1	MTR_2g097310	56.768	495	179	7	190	681	178	640	560
MS.gene41152.t1	MTR_2g097350	60.586	444	162	6	241	681	209	642	555
MS.gene41152.t1	MTR_2g097467	44.828	667	300	16	28	681	45	656	538
MS.gene41152.t1	MTR_2g097463	44.257	653	315	10	33	681	50	657	535

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41152.t1	AT1G07530	54.825	684	268	10	37	681	86	767	0.0	722
MS.gene41152.t1	AT2G29060	51.437	696	271	16	11	680	39	693	0.0	658
MS.gene41152.t1	AT2G29060	51.105	679	262	16	11	680	39	656	0.0	652
MS.gene41152.t1	AT1G07520	47.059	697	307	19	8	681	39	696	0.0	549
MS.gene41152.t1	AT1G07520	47.059	697	307	19	8	681	38	695	0.0	549
MS.gene41152.t1	AT2G37650	44.248	678	320	13	27	680	59	702	0.0	537
MS.gene41152.t1	AT2G37650	44.248	678	320	13	27	680	71	714	0.0	537
MS.gene41152.t1	AT2G29065	46.515	660	278	16	34	681	34	630	0.0	532
MS.gene41152.t1	AT1G07520	51.526	557	219	16	147	681	4	531	1.51e-177	516
MS.gene41152.t1	AT1G07520	51.526	557	219	16	147	681	4	531	1.51e-177	516

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Find 167 sgRNAs with CRISPR-Local

Find 187 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATCAACAGGAAAA+TGG	0.197416	4.1:+36354136	None:intergenic
AAAGAAGAAGCAAATAATTC+TGG	0.356533	4.1:-36353640	MS.gene41152:CDS
AAATCATTCTATGAAGTCAT+TGG	0.453169	4.1:-36354285	MS.gene41152:CDS
AAATGGGTTTGCAATATAGA+AGG	0.381555	4.1:+36354153	None:intergenic
AACAAAATCAACAGGAAAAT+GGG	0.391391	4.1:+36354137	None:intergenic
AACGTTCACAATACCTTGCT+AGG	0.524003	4.1:+36353077	None:intergenic
AAGAAACAAGGCAACAAGAA+GGG	0.596770	4.1:-36353598	MS.gene41152:CDS
AAGAAACTCTGCTGCCGACA+TGG	0.522015	4.1:-36353365	MS.gene41152:CDS
AAGAGCCGAGGTAAGAAACA+AGG	0.639801	4.1:-36353610	MS.gene41152:CDS
AAGGCAATATTCTTCTCCAT+TGG	0.423667	4.1:-36353485	MS.gene41152:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAATGCTAATGAGTTATTG+AGG	-	chr4.1:36353436-36353455	MS.gene41152:CDS	30.0%
CTACTGTTAAAACTATCATC+AGG	+	chr4.1:36352718-36352737	None:intergenic	30.0%
GAGAAATCAATTTCATCCAA+AGG	+	chr4.1:36352544-36352563	None:intergenic	30.0%
GCTTGAAAAACAAAATCAAC+AGG	+	chr4.1:36352823-36352842	None:intergenic	30.0%
GTTAATGAGATGTTTATCCA+AGG	+	chr4.1:36354363-36354382	None:intergenic	30.0%
TCGCTAGATTCAAAATTGTA+TGG	+	chr4.1:36353674-36353693	None:intergenic	30.0%
TTTCAAGCTACTTCAATGAA+TGG	-	chr4.1:36352835-36352854	MS.gene41152:CDS	30.0%
AAGAAACAAGGCAACAAGAA+GGG	-	chr4.1:36353351-36353370	MS.gene41152:CDS	35.0%
AAGGCAATATTCTTCTCCAT+TGG	-	chr4.1:36353464-36353483	MS.gene41152:CDS	35.0%
AATGCTTATGGAAGAAGACA+TGG	-	chr4.1:36352591-36352610	MS.gene41152:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	36352463	36354508	36352463	ID=MS.gene41152
chr4.1	mRNA	36352463	36354508	36352463	ID=MS.gene41152.t1;Parent=MS.gene41152
chr4.1	exon	36352463	36354508	36352463	ID=MS.gene41152.t1.exon1;Parent=MS.gene41152.t1
chr4.1	CDS	36352463	36354508	36352463	ID=cds.MS.gene41152.t1;Parent=MS.gene41152.t1

Gene Sequence

>MS.gene41152

ATGGATCACACCTTTGGATTTATGGATAACCCTTTTCTTCAACCAGCTCCAAACAATGCTACAGAAGAAGAAGATGCACCTTTGGATGAAATTGATTTCTCTTCCACTGTTCTTCGTTACATTAACCAAATGCTTATGGAAGAAGACATGGATATGAAACCATGTATGTTTCATGATTCATTGGCTTTACAAGCTGCTGAAAAATCATTCTATGAAGTCATTGGTGAGACTTACCCTTCTTCTGTACAAAGCCCTGATGATAGTTTTAACAGTAGTAGTAATTCTGTTGAGGTTGAATCATATTTGAGTAATTTTGATGTTTCTGAGCATAATCCTTCTATATTGCAAACCCATTTTCCTGTTGATTTTGTTTTTCAAGCTACTTCAATGAATGGTAGTAGTAGTAGTAATAGCAGTAGCGATTTCGGTGTAACCGGTGGTGGATTTAAGGATGGATTTCCTGATTCAAATTTGCTTAGTAAGAATGAGTCTGTATTGCAATTTGAGAGGGGTGTGGAGGAAGCTAATAAGTTTCTGCCTAAAGTGAATCCATTGGTTGTTGATTTGAAGAGTAACCCTTTTGTTCCTTCTTTTAGAAGGGAGGTTCAGGAGGTAGTGGTTGAGAGGGAGAGCAATGAAAGAGAACGTTTTTCAGCTGAGTCGAGGGGGAGGAAGAATCACGAGCGGGGAGATGAATTGAGTTTACAAGATGAGAGAAGTAACAAACAATCAGCTGTTTATACTGATGATGACAGTGAGCTATCGGAGCTGTTTGATAAGGTGCTGCTTGGAACGGGGTGCAGAAAGGAAGAGAAGGCTAATGGGTCGGATACGAGCGTGCAGCAGAAAGAAGAAGCAAATAATTCTGGTGGTGGAAAGAGCCGAGGTAAGAAACAAGGCAACAAGAAGGGTGTTGTGGATCTAAGGACAATGTTGGTTCTATGTGCACAATATGTTTCTTCTGATGATCGTGCAAATGCTAATGAGTTATTGAGGCAGATAAGGCAATATTCTTCTCCATTGGGTGATGGATCTCAGAGGCTGGCACATTGCTTTGCGAATGCTCTAGAAGCACGCATGGCTGGTACTGGCACTCAGATTTATACTGCTTTATACTCCAAAAGAAACTCTGCTGCCGACATGGTGAAAGCGTACCAAATGTATATTGAAGCCTGTCCATTCAAGAAGCTTGCATTCATTTTCGCGAACCATACAATTTTGAATCTAGCGAAGGAAGTAGAAACTCTCCACATTGTAGATTTTGGCATCCGTTACGGCTTTCAATGGCCTGCCCTTATTTATCGTTTATCAAAACGACCTGGGGGACCTCCTAAGCTGCTCTTGACAGGGATAGAACTCCCCCAACCTGGCTTCAGGCCTGCTGAGAGAGTCCAGGAGACAGGGCTTCGCCTAGCAAGGTATTGTGAACGTTTTAATGTTCCATTTGAGTTCAATGCTATTGCACAGAAATGGGAAACCATCAAAGTTGAGGACTTGAAGATAAAGAAAAATGAACTTCTTGTGGTGAATTCTGTTTGTCGGCTTAAAAATTTACTTGACGAGACAGTTGTGTTGAATAGTCCCAGGGATGCTGTTTTGAAATTAATTAGGGACGCAAATCCCAATATCTTTATACATACTACTGTCAATGGGAGCTACAATGCCCCATTCTTTGCGACACGGTTCAAGGAGGCTCTTTTCAATTACTCTACAATGTTTGATGTGCTTGACATCAATGTTGCTCGTGAAGATCAGACAAGGTTGATGTTTGAGAAAGAGTTCTGGGGGAGGGAAGTAATGAATATTATAGCTTGTGAAGGTTCTCAGAGGGTTGAGAGGCCAGAGACATACAGGAAATGGCAGGTTCGGAATACAAGGGCTGGATTTAGGCAACTGCCCTTGGATAAACATCTCATTAACAAGTTAAGATGCAAGTTGAAAGATGTGTATCATAGTGATTTCATGCTGGTTGAAGATGGAAACTGCATGCTGCAAGGTTGGAAGGGTCGAATAATTTACGCTTCCTCCTGTTGGGTACCTGCATAG

Protein sequence

>MS.gene41152.t1

MDHTFGFMDNPFLQPAPNNATEEEDAPLDEIDFSSTVLRYINQMLMEEDMDMKPCMFHDSLALQAAEKSFYEVIGETYPSSVQSPDDSFNSSSNSVEVESYLSNFDVSEHNPSILQTHFPVDFVFQATSMNGSSSSNSSSDFGVTGGGFKDGFPDSNLLSKNESVLQFERGVEEANKFLPKVNPLVVDLKSNPFVPSFRREVQEVVVERESNERERFSAESRGRKNHERGDELSLQDERSNKQSAVYTDDDSELSELFDKVLLGTGCRKEEKANGSDTSVQQKEEANNSGGGKSRGKKQGNKKGVVDLRTMLVLCAQYVSSDDRANANELLRQIRQYSSPLGDGSQRLAHCFANALEARMAGTGTQIYTALYSKRNSAADMVKAYQMYIEACPFKKLAFIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLLLTGIELPQPGFRPAERVQETGLRLARYCERFNVPFEFNAIAQKWETIKVEDLKIKKNELLVVNSVCRLKNLLDETVVLNSPRDAVLKLIRDANPNIFIHTTVNGSYNAPFFATRFKEALFNYSTMFDVLDINVAREDQTRLMFEKEFWGREVMNIIACEGSQRVERPETYRKWQVRNTRAGFRQLPLDKHLINKLRCKLKDVYHSDFMLVEDGNCMLQGWKGRIIYASSCWVPA