AlfalfaGEDB | MS.gene41169

M. sativa cultivar XinJiangDaYe / MS.gene41169

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41169.t1	XP_013456131.1	67.6	420	36	4	1	324	1	416	6.50E-138	500.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41169.t1	P46573	48.3	375	107	7	9	300	1	371	1.6e-76	287.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41169.t1	A0A072UKC4	67.6	420	36	4	1	324	1	416	4.7e-138	500.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41169.t1	MTR_4g063935	59.762	420	69	6	1	324	1	416	5.93e-153	435
MS.gene41169.t1	MTR_4g063935	59.479	422	69	7	1	324	19	436	7.26e-151	431
MS.gene41169.t1	MTR_4g063930	59.559	408	79	6	1	324	93	498	3.69e-150	431
MS.gene41169.t1	MTR_4g063945	57.524	412	82	4	1	321	1	410	1.35e-149	427
MS.gene41169.t1	MTR_4g063945	57.246	414	82	5	1	321	1	412	1.33e-147	422
MS.gene41169.t1	MTR_4g063940	66.894	293	56	2	71	324	128	418	4.82e-128	372
MS.gene41169.t1	MTR_4g063940	72.152	79	22	0	1	79	1	79	2.30e-17	82.8
MS.gene41169.t1	MTR_2g096950	49.871	389	103	6	9	310	1	384	8.82e-113	333
MS.gene41169.t1	MTR_7g061660	43.489	407	135	10	9	322	1	405	1.19e-92	281
MS.gene41169.t1	MTR_5g079840	42.611	406	137	9	9	320	1	404	4.26e-91	278

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41169.t1	AT2G28930	47.090	378	110	6	9	300	1	374	8.37e-100	300
MS.gene41169.t1	AT2G28930	53.674	313	99	5	30	300	63	371	1.42e-99	299
MS.gene41169.t1	AT2G28930	53.674	313	99	5	30	300	74	382	3.12e-99	299
MS.gene41169.t1	AT1G07570	49.441	358	96	6	9	285	1	354	6.34e-98	295
MS.gene41169.t1	AT1G07570	49.441	358	96	6	9	285	1	354	6.34e-98	295
MS.gene41169.t1	AT1G07570	49.441	358	96	6	9	285	1	354	6.34e-98	295
MS.gene41169.t1	AT1G07570	55.556	297	87	4	30	285	73	365	1.61e-97	295
MS.gene41169.t1	AT1G07570	61.345	238	49	3	89	285	3	238	1.52e-90	272
MS.gene41169.t1	AT5G02290	52.140	257	80	3	71	286	101	355	1.67e-84	260
MS.gene41169.t1	AT5G02290	52.140	257	80	3	71	286	101	355	1.67e-84	260

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Find 76 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACACATACTGAATC+TGG	0.400412	4.1:+36518267	None:intergenic
AAACGTAGGCTCCAAGAAAG+AGG	0.577226	4.1:+36518376	None:intergenic
AAATTTGCCCGGTGGAGACA+CGG	0.575772	4.1:+36518110	None:intergenic
AACACAGAAGCAGAACGTTG+TGG	0.631060	4.1:+36517463	None:intergenic
AACGTTCTGCTTCTGTGTTT+TGG	0.274243	4.1:-36517459	MS.gene41169:CDS
AAGGGTGATGTCTATAGTTT+CGG	0.384381	4.1:-36517837	MS.gene41169:CDS
AATTAGTATTGTTTCAGCCA+TGG	0.527816	4.1:-36519610	MS.gene41169:CDS
AGAACGTTGTGGATTTACTG+TGG	0.735251	4.1:+36517474	None:intergenic
AGACATCACCCTTAGAAGTG+TGG	0.658109	4.1:+36517847	None:intergenic
AGCCAAGTTGAGACCAAACA+TGG	0.574568	4.1:-36517605	MS.gene41169:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATTAGTATTGTTTCAGCCA+TGG	-	chr4.1:36517458-36517477	MS.gene41169:CDS	30.0%
AGATTCATGTCAACTTACAT+TGG	+	chr4.1:36518295-36518314	None:intergenic	30.0%
ATTAGTATTGTTTCAGCCAT+GGG	-	chr4.1:36517459-36517478	MS.gene41169:CDS	30.0%
ATTGCGATATTGTCAAATAG+CGG	-	chr4.1:36518017-36518036	MS.gene41169:intron	30.0%
CGTCTATAATATTTAACGAC+AGG	-	chr4.1:36519091-36519110	MS.gene41169:intron	30.0%
GATCATATCATTTCAGTTTC+AGG	-	chr4.1:36517587-36517606	MS.gene41169:CDS	30.0%
GATTCATGTCAACTTACATT+GGG	+	chr4.1:36518294-36518313	None:intergenic	30.0%
GCATAAATTCATAGACCAAA+AGG	+	chr4.1:36518532-36518551	None:intergenic	30.0%
GTCAAAAGACTTAATCAAGA+TGG	-	chr4.1:36517928-36517947	MS.gene41169:intron	30.0%
TTATCGTCAAAAAGTAGAGA+TGG	-	chr4.1:36519041-36519060	MS.gene41169:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4.1	gene	36517453	36519637	36517453	ID=MS.gene41169
chr4.1	mRNA	36517453	36519637	36517453	ID=MS.gene41169.t1;Parent=MS.gene41169
chr4.1	exon	36519562	36519637	36519562	ID=MS.gene41169.t1.exon1;Parent=MS.gene41169.t1
chr4.1	CDS	36519562	36519637	36519562	ID=cds.MS.gene41169.t1;Parent=MS.gene41169.t1
chr4.1	exon	36519350	36519481	36519350	ID=MS.gene41169.t1.exon2;Parent=MS.gene41169.t1
chr4.1	CDS	36519350	36519481	36519350	ID=cds.MS.gene41169.t1;Parent=MS.gene41169.t1
chr4.1	exon	36519115	36519176	36519115	ID=MS.gene41169.t1.exon3;Parent=MS.gene41169.t1
chr4.1	CDS	36519115	36519176	36519115	ID=cds.MS.gene41169.t1;Parent=MS.gene41169.t1
chr4.1	exon	36518506	36518641	36518506	ID=MS.gene41169.t1.exon4;Parent=MS.gene41169.t1
chr4.1	CDS	36518506	36518641	36518506	ID=cds.MS.gene41169.t1;Parent=MS.gene41169.t1
chr4.1	exon	36518267	36518415	36518267	ID=MS.gene41169.t1.exon5;Parent=MS.gene41169.t1
chr4.1	CDS	36518267	36518415	36518267	ID=cds.MS.gene41169.t1;Parent=MS.gene41169.t1
chr4.1	exon	36518077	36518194	36518077	ID=MS.gene41169.t1.exon6;Parent=MS.gene41169.t1
chr4.1	CDS	36518077	36518194	36518077	ID=cds.MS.gene41169.t1;Parent=MS.gene41169.t1
chr4.1	exon	36517811	36517873	36517811	ID=MS.gene41169.t1.exon7;Parent=MS.gene41169.t1
chr4.1	CDS	36517811	36517873	36517811	ID=cds.MS.gene41169.t1;Parent=MS.gene41169.t1
chr4.1	exon	36517453	36517691	36517453	ID=MS.gene41169.t1.exon8;Parent=MS.gene41169.t1
chr4.1	CDS	36517453	36517691	36517453	ID=cds.MS.gene41169.t1;Parent=MS.gene41169.t1

Gene Sequence

>MS.gene41169

ATGGGAATTAGTATTGTTTCAGCCATGGGAGTTTGTTTAGGTGGCCAAGTCAAAGCTGAGGGCCCAAATAATTCAGGTATTCATATGTGTAGTACTAGTATGTAATATGTGGTTTATGTAAGTTTTGTTTTAGTGATCATATCATTTCAGTTTCAGGGTTAAGTTCAAAGAGTGTGATAGTCAATACAGAAGATCACAGCATGCTATGTTACAAGGGTTCTGATGATCTCATTAGCTCAAGTAGTGAGGTATCAGCAGCTTTGGCATCGGTGCCACGAACTCTCCCATGTGAGGGGGAGATCTTGCAATCATCCAATTTAAAGAGTTTTACTTTGACAGAACTTCAGGCTGCAACTAGAAATTTTCGTGTAGACATTGTGTTAGGAGATGGCGATTTTGGATCAGTTTTTAAGGGCCGGATTGATGTACACTCACCTGATCTGCTGCCAAACCTGGCACAGGCATTGCTGTTGCTGTCAAAAGACTTAATCAAGATGGTGTCAAAAGTCACAACGAGTTGATGGTAAGTTCGACTCATATAATTAATTAGCAAATATTGTCACTATTGCGATATTGTCAAATAGCGGCTATAGTGGCGCTATAGCTTAGCTGAATTTGAACAAATCGTTGTTATTCTGCAATACGCTATTATATTTAGCCTAGCAAAACTTGACAGAACCACTATTTTCTGCGGTTCACAACATTGCTGTGTTGCATGTTTAATGCTAGTACTTTATGGAGAATATTTTTACCAATTGTTTCTTTACTAAGCTAATTTTACTAATGGTTGGGAAACTAAGCCTGTGTTTGGATCCGCATTGGTCAGCAAATCTAACGTCCCAATGTAAGTTGACATGAATCTCATGAAGCTGCAAAGTGAAGCTTTTAGTCAGCCTCGCGGTGTAACCGCGATTTCATTAAAATCCAAACACATGCTAATTACGAGGGATTCGTTTTGAGTGATTCATTTAATAGTGTTTTCCCTTTCTATCTTAGGCTGAAGTCAATTATCTGGGCCAGCTTTCACATCCTCATCTAGTGAAATTGATTGGCTATTGTCTTGAAGATGAAAACAACCTTTTGGTCTATGAATTTATGCCACGTGGCAGCTTGGAGAATCACTTATTCATCAGTAAGTTCTTCCTGTTTATCATTTCACATTGTTGTTCTTGAGAGGCATGCCTAACATTACAGATAATAATGTTGGAATGTTGTAACACAGGAGGCTCATATTTTCAACCTCTTTCTTGGAGCCTACGTTTGAAGGTTACTCTTGGTGCTGCCAAAGGCCTTGCATTCCTTCACAGTGCTGAAACAAAATTGATTTACCGAAACTTCAAATATCTTGCCAGATTCAGTATGTGTCCTTTTGTACAGCCACATGAATAAATTATGTTTATTTAGGTAACATGTTTGAAAATGTCCTTGCTGATTTGATGACAGAATTATAGTGCAAAACTCTCTAATTTTGGGCTGGCAAAGGATGGGTCCACGAGTGATAGAAGCCGTGTCTCCACCGGGCAAATTTACGGATATGCAGCTCCAGAGTACCTAGCCACCGGTACTATAACCATTAGACAAAATCAAATTATCGTCAAAAAGTAGAGATGGAAAAATTAGTTTCTTATCCAATTCTTACGTCTATAATATTTAACGACAGGATTATAATCAAACTTCATGTTTTTCTGTTAAAACTTTGCTCATTTATTCAATTTTTTAGTATGTTTTTAGTAGTGACTAAGATAAAATACTTTGTTGATGAAGGTAACCACACTTCTAAGGGTGATGTCTATAGTTTCGGAGTTGTCCTGTTGGAAATACTATCAGGTAGGAGAATCGTTGACAAGAATAGACCACTAAGACAACACAATTTGGTGGAATGGGCTAAGCTGTGTCCATCCAACAAGCGTAAGATTTTGCGCATATGTTGGATAATCGCCTTGAAGGCCAATATGAAATAGAAGACGCCTATAAGGTTGCTACACTCTCCCTAAGGTGCCTTTCTACAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACAAATTTGGAGCAGTTGCAGGTTCCTTATGTAAATGGAAGCAACAAGAATCATTTTCGGAGAAGAAGTGCTGATGATGTTACCCATGTTAGAACAGCCACAGTAAATCCACAACGTTCTGCTTCTGTGTTTTGGACATGA

Protein sequence

>MS.gene41169.t1

MGISIVSAMGVCLGGQVKAEGPNNSGLSSKSVIVNTEDHSMLCYKGSDDLISSSSEVSAALASVPRTLPCIAVAVKRLNQDGVKSHNELMAEVNYLGQLSHPHLVKLIGYCLEDENNLLVYEFMPRGSLENHLFIRGSYFQPLSWSLRLKVTLGAAKGLAFLHSAETKLIYRNFKYLARFSMCPFNYSAKLSNFGLAKDGSTSDRSRVSTGQIYGYAAPEYLATGNHTSKGDVYSFGVVLLEILSGQYEIEDAYKVATLSLRCLSTEAKLRPNMDEVVTNLEQLQVPYVNGSNKNHFRRRSADDVTHVRTATVNPQRSASVFWT