Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41184.t1 | KEH30134.1 | 92.2 | 258 | 15 | 3 | 1 | 254 | 1 | 257 | 5.40E-124 | 453.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41184.t1 | Q6X7K1 | 38.9 | 257 | 120 | 7 | 17 | 250 | 6 | 248 | 8.4e-33 | 142.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41184.t1 | A0A072UK53 | 92.2 | 258 | 15 | 3 | 1 | 254 | 1 | 257 | 3.9e-124 | 453.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene41184.t1 | TF | HB-WOX |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41184.t1 | MTR_4g063735 | 94.872 | 234 | 7 | 3 | 25 | 254 | 25 | 257 | 1.62e-164 | 455 |
MS.gene41184.t1 | MTR_8g107210 | 56.383 | 94 | 35 | 2 | 12 | 99 | 80 | 173 | 6.78e-28 | 109 |
MS.gene41184.t1 | MTR_4g084550 | 57.317 | 82 | 35 | 0 | 6 | 87 | 45 | 126 | 2.59e-27 | 103 |
MS.gene41184.t1 | MTR_1g019130 | 62.500 | 72 | 27 | 0 | 20 | 91 | 85 | 156 | 6.26e-27 | 104 |
MS.gene41184.t1 | MTR_1g019130 | 35.754 | 179 | 85 | 4 | 20 | 196 | 85 | 235 | 1.18e-26 | 103 |
MS.gene41184.t1 | MTR_7g060630 | 66.667 | 66 | 22 | 0 | 23 | 88 | 6 | 71 | 6.81e-26 | 100 |
MS.gene41184.t1 | MTR_5g021930 | 68.182 | 66 | 20 | 1 | 22 | 86 | 27 | 92 | 6.46e-25 | 100 |
MS.gene41184.t1 | MTR_5g081990 | 51.899 | 79 | 37 | 1 | 13 | 90 | 20 | 98 | 3.73e-24 | 95.9 |
MS.gene41184.t1 | MTR_8g095580 | 65.455 | 55 | 19 | 0 | 34 | 88 | 91 | 145 | 3.53e-20 | 84.7 |
MS.gene41184.t1 | MTR_3g088485 | 63.636 | 55 | 20 | 0 | 34 | 88 | 89 | 143 | 7.07e-20 | 84.0 |
MS.gene41184.t1 | MTR_2g015000 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 4.14e-14 | 71.6 |
MS.gene41184.t1 | MTR_7g025010 | 45.161 | 62 | 34 | 0 | 25 | 86 | 47 | 108 | 2.28e-13 | 69.7 |
MS.gene41184.t1 | MTR_1g115315 | 46.154 | 65 | 35 | 0 | 20 | 84 | 80 | 144 | 6.19e-13 | 67.0 |
MS.gene41184.t1 | MTR_1g115315 | 44.776 | 67 | 37 | 0 | 20 | 86 | 80 | 146 | 7.51e-13 | 67.0 |
MS.gene41184.t1 | MTR_4g088070 | 44.262 | 61 | 34 | 0 | 25 | 85 | 29 | 89 | 3.59e-12 | 65.9 |
MS.gene41184.t1 | MTR_3g115620 | 40.909 | 66 | 39 | 0 | 20 | 85 | 77 | 142 | 1.11e-11 | 62.8 |
MS.gene41184.t1 | MTR_7g023810 | 45.161 | 62 | 34 | 0 | 25 | 86 | 68 | 129 | 3.50e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41184.t1 | AT5G59340 | 41.245 | 257 | 114 | 8 | 17 | 250 | 6 | 248 | 1.07e-53 | 174 |
MS.gene41184.t1 | AT3G18010 | 45.312 | 128 | 57 | 2 | 20 | 134 | 71 | 198 | 5.77e-29 | 112 |
MS.gene41184.t1 | AT1G46480 | 36.994 | 173 | 98 | 3 | 24 | 196 | 89 | 250 | 1.76e-26 | 103 |
MS.gene41184.t1 | AT1G46480 | 65.672 | 67 | 23 | 0 | 24 | 90 | 89 | 155 | 3.24e-26 | 101 |
MS.gene41184.t1 | AT2G28610 | 62.687 | 67 | 25 | 0 | 22 | 88 | 5 | 71 | 6.98e-25 | 99.4 |
MS.gene41184.t1 | AT3G11260 | 50.000 | 80 | 40 | 0 | 13 | 92 | 12 | 91 | 8.24e-25 | 97.4 |
MS.gene41184.t1 | AT5G05770 | 54.054 | 74 | 34 | 0 | 21 | 94 | 25 | 98 | 9.94e-25 | 95.5 |
MS.gene41184.t1 | AT2G17950 | 63.636 | 66 | 23 | 1 | 22 | 86 | 35 | 100 | 2.19e-23 | 96.3 |
MS.gene41184.t1 | AT2G01500 | 64.407 | 59 | 21 | 0 | 21 | 79 | 57 | 115 | 5.09e-22 | 92.4 |
MS.gene41184.t1 | AT5G45980 | 51.613 | 62 | 30 | 0 | 25 | 86 | 55 | 116 | 7.81e-15 | 73.2 |
MS.gene41184.t1 | AT1G20700 | 40.506 | 79 | 47 | 0 | 13 | 91 | 21 | 99 | 8.26e-15 | 70.1 |
MS.gene41184.t1 | AT1G20700 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 1.94e-14 | 70.5 |
MS.gene41184.t1 | AT1G20700 | 40.506 | 79 | 47 | 0 | 13 | 91 | 83 | 161 | 2.28e-14 | 70.5 |
MS.gene41184.t1 | AT2G33880 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.06e-14 | 70.5 |
MS.gene41184.t1 | AT2G33880 | 48.387 | 62 | 32 | 0 | 25 | 86 | 55 | 116 | 9.26e-14 | 70.5 |
MS.gene41184.t1 | AT4G35550 | 40.278 | 72 | 43 | 0 | 14 | 85 | 88 | 159 | 3.18e-13 | 68.2 |
MS.gene41184.t1 | AT1G20710 | 50.000 | 54 | 27 | 0 | 32 | 85 | 86 | 139 | 2.06e-11 | 62.0 |
Find 45 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAAATAGGTGAAGGATAAA+TGG | 0.223363 | 4.1:+36826521 | None:intergenic |
AATCAAGATCATGGTTATAA+TGG | 0.248654 | 4.1:-36825270 | MS.gene41184:CDS |
CTGTAACCAAAGTTATAGTT+AGG | 0.305798 | 4.1:+36825438 | None:intergenic |
TTCTTCAGGACAAGGTTCTT+AGG | 0.317828 | 4.1:-36825217 | None:intergenic |
AGTTCCACTGATACACATTC+TGG | 0.341293 | 4.1:-36825315 | MS.gene41184:CDS |
AACATACCATTTGGACAAAT+AGG | 0.347632 | 4.1:+36826507 | None:intergenic |
ACTGCATCCAACTGGCATAT+TGG | 0.347683 | 4.1:-36825388 | MS.gene41184:CDS |
ACTGCAGGTAGAAGCACTTT+TGG | 0.360138 | 4.1:+36825561 | None:intergenic |
TAGCTTATTTCATGACTTTG+TGG | 0.366655 | 4.1:+36825597 | None:intergenic |
CCTTCACCTATTTGTCCAAA+TGG | 0.376093 | 4.1:-36826513 | MS.gene41184:intron |
ATTAATGAGGAAGGTTCAAA+TGG | 0.376394 | 4.1:-36826801 | MS.gene41184:CDS |
ATCAAGATCATGGTTATAAT+GGG | 0.392817 | 4.1:-36825269 | MS.gene41184:CDS |
TGTGGTTGTGGTACGCAATA+TGG | 0.424892 | 4.1:+36825615 | None:intergenic |
ATTTCATGACTTTGTGGTTG+TGG | 0.425330 | 4.1:+36825603 | None:intergenic |
CAAATAGGTGAAGGATAAAT+GGG | 0.425469 | 4.1:+36826522 | None:intergenic |
TCTTGTATTTCTTCAGCACT+TGG | 0.437582 | 4.1:+36826687 | None:intergenic |
TTGTTTCCACTGCATCCAAC+TGG | 0.438638 | 4.1:-36825396 | MS.gene41184:CDS |
AGAATCCCTAACTATAACTT+TGG | 0.443156 | 4.1:-36825444 | MS.gene41184:CDS |
TTCCCTTCCAATATGCCAGT+TGG | 0.473137 | 4.1:+36825381 | None:intergenic |
GCTGAGAAAGTTATGTCAAA+TGG | 0.482284 | 4.1:-36825519 | MS.gene41184:CDS |
ACTGCTAGGCTTAGAGTGTA+TGG | 0.483688 | 4.1:-36826660 | MS.gene41184:CDS |
TGTAACCAAAGTTATAGTTA+GGG | 0.484125 | 4.1:+36825439 | None:intergenic |
TTGGAGAATTTGTATAAGCA+AGG | 0.498360 | 4.1:-36826720 | MS.gene41184:CDS |
CATGATATCAATCAAGATCA+TGG | 0.502262 | 4.1:-36825279 | MS.gene41184:CDS |
AAAAGAACAAATAAGTATGT+TGG | 0.504717 | 4.1:-36826739 | MS.gene41184:CDS |
CATCCAACTGGCATATTGGA+AGG | 0.509666 | 4.1:-36825384 | MS.gene41184:CDS |
TTACAGTAATCAAGAAACAT+TGG | 0.520782 | 4.1:-36825421 | MS.gene41184:CDS |
GGTGAAGGATAAATGGGTTG+AGG | 0.539516 | 4.1:+36826528 | None:intergenic |
TTAATGAGGAAGGTTCAAAT+GGG | 0.550220 | 4.1:-36826800 | MS.gene41184:CDS |
AATAATGAGATTAATGAGGA+AGG | 0.554945 | 4.1:-36826810 | MS.gene41184:CDS |
TTTAATAATTCTTCAGGACA+AGG | 0.564633 | 4.1:-36825225 | MS.gene41184:CDS |
TTCCTTCTAAAACCTACTGC+AGG | 0.572590 | 4.1:+36825546 | None:intergenic |
CTGAAACAATAGAAGACACC+TGG | 0.584011 | 4.1:+36825349 | None:intergenic |
AAAGTGCTTCTACCTGCAGT+AGG | 0.586289 | 4.1:-36825558 | MS.gene41184:CDS |
AATATGCCAGTTGGATGCAG+TGG | 0.586423 | 4.1:+36825390 | None:intergenic |
AGAAGAAGAAGAATAATGGA+GGG | 0.590346 | 4.1:-36826840 | None:intergenic |
AGAACCAGAATGTGTATCAG+TGG | 0.599607 | 4.1:+36825311 | None:intergenic |
AGAGTGTATGGTCACATCGA+AGG | 0.601558 | 4.1:-36826648 | MS.gene41184:CDS |
AAATATCTGCAATAGTCCAA+TGG | 0.604277 | 4.1:-36825490 | MS.gene41184:CDS |
CCATTTGGACAAATAGGTGA+AGG | 0.604508 | 4.1:+36826513 | None:intergenic |
GAATAATAATGAGATTAATG+AGG | 0.604874 | 4.1:-36826814 | MS.gene41184:CDS |
AAATACAAGAAATCACTGCT+AGG | 0.611419 | 4.1:-36826674 | MS.gene41184:CDS |
ATCCAACTGGCATATTGGAA+GGG | 0.612491 | 4.1:-36825383 | MS.gene41184:CDS |
GGAAGGGAAAACAACTGACC+AGG | 0.627194 | 4.1:-36825367 | MS.gene41184:CDS |
GTATTTCATCAAGTTCACGA+TGG | 0.702362 | 4.1:-36826770 | MS.gene41184:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAACTAATAGTTAAAAACA+AGG | + | chr4.1:36825923-36825942 | None:intergenic | 15.0% |
!! | ATTATTAAAAAAGTCAAAGA+AGG | + | chr4.1:36826807-36826826 | None:intergenic | 15.0% |
!! | TTATTAAAAAAGTCAAAGAA+GGG | + | chr4.1:36826806-36826825 | None:intergenic | 15.0% |
!!! | AACTAAAAAAGCATTAAAAA+AGG | - | chr4.1:36826232-36826251 | MS.gene41184:intron | 15.0% |
!!! | GGTAATTGAATTATTATTTT+TGG | - | chr4.1:36826387-36826406 | MS.gene41184:intron | 15.0% |
!!! | TTGTTCTTATTATATTTTCA+TGG | - | chr4.1:36825633-36825652 | MS.gene41184:intron | 15.0% |
!! | AAAAGAACAAATAAGTATGT+TGG | - | chr4.1:36825304-36825323 | MS.gene41184:CDS | 20.0% |
!! | ACCAAAAATAAAATACTAGA+AGG | + | chr4.1:36826112-36826131 | None:intergenic | 20.0% |
!! | ATCTATATTGTGGTAAAATA+TGG | - | chr4.1:36825867-36825886 | MS.gene41184:intron | 20.0% |
!! | CAAAAACATTGATATGAAAA+TGG | + | chr4.1:36825616-36825635 | None:intergenic | 20.0% |
!! | GAATAATAATGAGATTAATG+AGG | - | chr4.1:36825229-36825248 | MS.gene41184:CDS | 20.0% |
!! | TCTATATTGTGGTAAAATAT+GGG | - | chr4.1:36825868-36825887 | MS.gene41184:intron | 20.0% |
!! | TGAAAATGAGATTTATTGAA+AGG | + | chr4.1:36826020-36826039 | None:intergenic | 20.0% |
!!! | ATACTTATTTGTTCTTTTGT+TGG | + | chr4.1:36825302-36825321 | None:intergenic | 20.0% |
!!! | ATGTTTTCATTATATACCAT+TGG | + | chr4.1:36826572-36826591 | None:intergenic | 20.0% |
!!! | GACTTTTTTAATAATTCTTC+AGG | - | chr4.1:36826812-36826831 | MS.gene41184:CDS | 20.0% |
!!! | TACTTATTTGTTCTTTTGTT+GGG | + | chr4.1:36825301-36825320 | None:intergenic | 20.0% |
!!! | TTCAATAAATCTCATTTTCA+TGG | - | chr4.1:36826020-36826039 | MS.gene41184:intron | 20.0% |
! | AAGGTTAATTTCTCCTAAAA+CGG | + | chr4.1:36826001-36826020 | None:intergenic | 25.0% |
! | AATAATGAGATTAATGAGGA+AGG | - | chr4.1:36825233-36825252 | MS.gene41184:CDS | 25.0% |
! | AATCAAGATCATGGTTATAA+TGG | - | chr4.1:36826773-36826792 | MS.gene41184:CDS | 25.0% |
! | ATCAAGATCATGGTTATAAT+GGG | - | chr4.1:36826774-36826793 | MS.gene41184:CDS | 25.0% |
! | CAAATAAATTACTCCATCTT+TGG | + | chr4.1:36826281-36826300 | None:intergenic | 25.0% |
! | TAAAACGGGATTTATATAGA+GGG | + | chr4.1:36825986-36826005 | None:intergenic | 25.0% |
! | TATAACCTAGAACTAGAAAA+AGG | + | chr4.1:36825573-36825592 | None:intergenic | 25.0% |
! | TATCTTTGTACGACATAAAA+TGG | - | chr4.1:36825763-36825782 | MS.gene41184:intron | 25.0% |
! | TGTAACCAAAGTTATAGTTA+GGG | + | chr4.1:36826607-36826626 | None:intergenic | 25.0% |
! | TTACAGTAATCAAGAAACAT+TGG | - | chr4.1:36826622-36826641 | MS.gene41184:CDS | 25.0% |
! | TTTAATAATTCTTCAGGACA+AGG | - | chr4.1:36826818-36826837 | MS.gene41184:CDS | 25.0% |
!!! | GCCTTCTAGTATTTTATTTT+TGG | - | chr4.1:36826108-36826127 | MS.gene41184:intron | 25.0% |
!!! | TTGTTGTTGTATCTTTTTCA+TGG | - | chr4.1:36825833-36825852 | MS.gene41184:intron | 25.0% |
AAATACAAGAAATCACTGCT+AGG | - | chr4.1:36825369-36825388 | MS.gene41184:CDS | 30.0% | |
AAATATCTGCAATAGTCCAA+TGG | - | chr4.1:36826553-36826572 | MS.gene41184:CDS | 30.0% | |
AACAGAAACATAACCAAAGA+TGG | - | chr4.1:36826265-36826284 | MS.gene41184:intron | 30.0% | |
AACATACCATTTGGACAAAT+AGG | + | chr4.1:36825539-36825558 | None:intergenic | 30.0% | |
ACAAATAGGTGAAGGATAAA+TGG | + | chr4.1:36825525-36825544 | None:intergenic | 30.0% | |
AGAATCCCTAACTATAACTT+TGG | - | chr4.1:36826599-36826618 | MS.gene41184:CDS | 30.0% | |
AGGTTAATTTCTCCTAAAAC+GGG | + | chr4.1:36826000-36826019 | None:intergenic | 30.0% | |
ATTAATGAGGAAGGTTCAAA+TGG | - | chr4.1:36825242-36825261 | MS.gene41184:CDS | 30.0% | |
CAAATAGGTGAAGGATAAAT+GGG | + | chr4.1:36825524-36825543 | None:intergenic | 30.0% | |
CATGATATCAATCAAGATCA+TGG | - | chr4.1:36826764-36826783 | MS.gene41184:CDS | 30.0% | |
CCATATTTAAATTGTGCTAG+CGG | - | chr4.1:36825699-36825718 | MS.gene41184:intron | 30.0% | |
CTAAAACGGGATTTATATAG+AGG | + | chr4.1:36825987-36826006 | None:intergenic | 30.0% | |
CTGTAACCAAAGTTATAGTT+AGG | + | chr4.1:36826608-36826627 | None:intergenic | 30.0% | |
TAGCTTATTTCATGACTTTG+TGG | + | chr4.1:36826449-36826468 | None:intergenic | 30.0% | |
TTAATGAGGAAGGTTCAAAT+GGG | - | chr4.1:36825243-36825262 | MS.gene41184:CDS | 30.0% | |
TTCTGCAAACATCTATATTG+TGG | - | chr4.1:36825857-36825876 | MS.gene41184:intron | 30.0% | |
TTGGAGAATTTGTATAAGCA+AGG | - | chr4.1:36825323-36825342 | MS.gene41184:CDS | 30.0% | |
TTTCTTCATGCAAATGTGTT+TGG | - | chr4.1:36826170-36826189 | MS.gene41184:intron | 30.0% | |
! | AAAACAAGGTGCATTTTCAA+CGG | + | chr4.1:36825909-36825928 | None:intergenic | 30.0% |
! | AACCTAATGAGTACTACTTT+TGG | + | chr4.1:36825674-36825693 | None:intergenic | 30.0% |
! | AAGGAAAGAATGTCTTTTAC+TGG | - | chr4.1:36825414-36825433 | MS.gene41184:CDS | 30.0% |
! | CTCTATATAAATCCCGTTTT+AGG | - | chr4.1:36825985-36826004 | MS.gene41184:intron | 30.0% |
!!! | TTCTTCCTTTTTCTAGTTCT+AGG | - | chr4.1:36825565-36825584 | MS.gene41184:CDS | 30.0% |
ATTTCATGACTTTGTGGTTG+TGG | + | chr4.1:36826443-36826462 | None:intergenic | 35.0% | |
CCGCTAGCACAATTTAAATA+TGG | + | chr4.1:36825702-36825721 | None:intergenic | 35.0% | |
CTAGTATTCTACTGTAACGT+TGG | - | chr4.1:36826366-36826385 | MS.gene41184:intron | 35.0% | |
GAAGTTGAGAACATACCATT+TGG | + | chr4.1:36825548-36825567 | None:intergenic | 35.0% | |
GCTGAGAAAGTTATGTCAAA+TGG | - | chr4.1:36826524-36826543 | MS.gene41184:CDS | 35.0% | |
GTATTTCATCAAGTTCACGA+TGG | - | chr4.1:36825273-36825292 | MS.gene41184:CDS | 35.0% | |
TCTTGTATTTCTTCAGCACT+TGG | + | chr4.1:36825359-36825378 | None:intergenic | 35.0% | |
TGCCAAAAGTAGTACTCATT+AGG | - | chr4.1:36825669-36825688 | MS.gene41184:intron | 35.0% | |
!! | GAAGCACTTTTGGATTTTGA+GGG | + | chr4.1:36826475-36826494 | None:intergenic | 35.0% |
!!! | AGAAGCACTTTTGGATTTTG+AGG | + | chr4.1:36826476-36826495 | None:intergenic | 35.0% |
AGAACCAGAATGTGTATCAG+TGG | + | chr4.1:36826735-36826754 | None:intergenic | 40.0% | |
AGTTCCACTGATACACATTC+TGG | - | chr4.1:36826728-36826747 | MS.gene41184:CDS | 40.0% | |
ATCCAACTGGCATATTGGAA+GGG | - | chr4.1:36826660-36826679 | MS.gene41184:CDS | 40.0% | |
CCATTTGGACAAATAGGTGA+AGG | + | chr4.1:36825533-36825552 | None:intergenic | 40.0% | |
CCTTCACCTATTTGTCCAAA+TGG | - | chr4.1:36825530-36825549 | MS.gene41184:CDS | 40.0% | |
CTGAAACAATAGAAGACACC+TGG | + | chr4.1:36826697-36826716 | None:intergenic | 40.0% | |
!! | TTCCTTCTAAAACCTACTGC+AGG | + | chr4.1:36826500-36826519 | None:intergenic | 40.0% |
!!! | TACCTGCAGTAGGTTTTAGA+AGG | - | chr4.1:36826495-36826514 | MS.gene41184:intron | 40.0% |
AATATGCCAGTTGGATGCAG+TGG | + | chr4.1:36826656-36826675 | None:intergenic | 45.0% | |
ACTGCATCCAACTGGCATAT+TGG | - | chr4.1:36826655-36826674 | MS.gene41184:CDS | 45.0% | |
ACTGCTAGGCTTAGAGTGTA+TGG | - | chr4.1:36825383-36825402 | MS.gene41184:CDS | 45.0% | |
AGAGTGTATGGTCACATCGA+AGG | - | chr4.1:36825395-36825414 | MS.gene41184:CDS | 45.0% | |
CATCCAACTGGCATATTGGA+AGG | - | chr4.1:36826659-36826678 | MS.gene41184:CDS | 45.0% | |
TGTGGTTGTGGTACGCAATA+TGG | + | chr4.1:36826431-36826450 | None:intergenic | 45.0% | |
TTCCCTTCCAATATGCCAGT+TGG | + | chr4.1:36826665-36826684 | None:intergenic | 45.0% | |
TTGTTTCCACTGCATCCAAC+TGG | - | chr4.1:36826647-36826666 | MS.gene41184:CDS | 45.0% | |
! | AAAGTGCTTCTACCTGCAGT+AGG | - | chr4.1:36826485-36826504 | MS.gene41184:intron | 45.0% |
!! | AAATTGTGCTAGCGGACTTG+TGG | - | chr4.1:36825707-36825726 | MS.gene41184:intron | 45.0% |
!! | GGTGAAGGATAAATGGGTTG+AGG | + | chr4.1:36825518-36825537 | None:intergenic | 45.0% |
!!! | ACTGCAGGTAGAAGCACTTT+TGG | + | chr4.1:36826485-36826504 | None:intergenic | 45.0% |
GGAAGGGAAAACAACTGACC+AGG | - | chr4.1:36826676-36826695 | MS.gene41184:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.1 | gene | 36825218 | 36826847 | 36825218 | ID=MS.gene41184 |
chr4.1 | mRNA | 36825218 | 36826847 | 36825218 | ID=MS.gene41184.t1;Parent=MS.gene41184 |
chr4.1 | exon | 36826514 | 36826847 | 36826514 | ID=MS.gene41184.t1.exon1;Parent=MS.gene41184.t1 |
chr4.1 | CDS | 36826514 | 36826847 | 36826514 | ID=cds.MS.gene41184.t1;Parent=MS.gene41184.t1 |
chr4.1 | exon | 36825218 | 36825648 | 36825218 | ID=MS.gene41184.t1.exon2;Parent=MS.gene41184.t1 |
chr4.1 | CDS | 36825218 | 36825648 | 36825218 | ID=cds.MS.gene41184.t1;Parent=MS.gene41184.t1 |
Gene Sequence |
Protein sequence |