Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41236.t1 | XP_004490690.1 | 46.2 | 719 | 146 | 4 | 1 | 485 | 1 | 712 | 2.70E-156 | 562 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41236.t1 | Q9SZL8 | 18.8 | 607 | 229 | 7 | 6 | 348 | 69 | 675 | 1.5e-22 | 109.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41236.t1 | A0A1S2XKF4 | 46.2 | 719 | 146 | 4 | 1 | 485 | 1 | 712 | 1.9e-156 | 562.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41236.t1 | TF | FAR1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41236.t1 | MTR_7g074790 | 54.494 | 178 | 62 | 2 | 1 | 177 | 1 | 160 | 2.35e-60 | 197 |
| MS.gene41236.t1 | MTR_5g039760 | 51.397 | 179 | 61 | 3 | 1 | 177 | 1 | 155 | 4.58e-55 | 182 |
| MS.gene41236.t1 | MTR_0402s0040 | 28.160 | 451 | 291 | 13 | 10 | 440 | 26 | 463 | 1.27e-42 | 158 |
| MS.gene41236.t1 | MTR_7g061980 | 55.462 | 119 | 52 | 1 | 1 | 118 | 1 | 119 | 3.73e-42 | 146 |
| MS.gene41236.t1 | MTR_4g102720 | 34.524 | 168 | 77 | 1 | 7 | 174 | 4 | 138 | 3.37e-30 | 117 |
| MS.gene41236.t1 | MTR_2g099430 | 49.425 | 87 | 43 | 1 | 33 | 118 | 26 | 112 | 5.55e-20 | 85.9 |
| MS.gene41236.t1 | MTR_4g069880 | 51.562 | 64 | 31 | 0 | 1 | 64 | 1 | 64 | 1.48e-17 | 77.4 |
| MS.gene41236.t1 | MTR_5g015480 | 37.705 | 122 | 73 | 2 | 10 | 128 | 56 | 177 | 3.33e-17 | 82.0 |
| MS.gene41236.t1 | MTR_7g113010 | 36.508 | 126 | 65 | 2 | 10 | 133 | 457 | 569 | 6.71e-16 | 80.9 |
| MS.gene41236.t1 | MTR_1g083640 | 30.928 | 194 | 108 | 7 | 8 | 179 | 52 | 241 | 2.98e-15 | 76.6 |
| MS.gene41236.t1 | MTR_1g019850 | 30.827 | 133 | 84 | 3 | 10 | 140 | 70 | 196 | 4.19e-15 | 75.1 |
| MS.gene41236.t1 | MTR_1g070355 | 28.144 | 167 | 112 | 3 | 14 | 174 | 78 | 242 | 4.34e-15 | 78.2 |
| MS.gene41236.t1 | MTR_0558s0020 | 30.928 | 194 | 108 | 7 | 8 | 179 | 37 | 226 | 4.46e-15 | 76.3 |
| MS.gene41236.t1 | MTR_3g058090 | 36.585 | 123 | 54 | 3 | 285 | 407 | 5 | 103 | 6.95e-15 | 70.9 |
| MS.gene41236.t1 | MTR_2g014100 | 29.897 | 194 | 110 | 6 | 8 | 179 | 45 | 234 | 1.01e-13 | 71.2 |
| MS.gene41236.t1 | MTR_1g057920 | 39.326 | 89 | 51 | 2 | 10 | 95 | 34 | 122 | 1.19e-13 | 68.2 |
| MS.gene41236.t1 | MTR_1g013060 | 30.000 | 170 | 112 | 3 | 7 | 169 | 21 | 190 | 1.89e-13 | 70.1 |
| MS.gene41236.t1 | MTR_6g017200 | 37.805 | 82 | 50 | 1 | 10 | 90 | 58 | 139 | 3.11e-13 | 67.8 |
| MS.gene41236.t1 | MTR_5g076070 | 30.000 | 160 | 108 | 3 | 13 | 168 | 56 | 215 | 4.74e-13 | 70.1 |
| MS.gene41236.t1 | MTR_5g045210 | 31.429 | 105 | 69 | 2 | 287 | 390 | 20 | 122 | 3.93e-12 | 65.9 |
| MS.gene41236.t1 | MTR_4g117620 | 62.791 | 43 | 16 | 0 | 443 | 485 | 36 | 78 | 4.55e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41236.t1 | AT4G38180 | 31.638 | 177 | 116 | 3 | 6 | 177 | 69 | 245 | 3.47e-20 | 94.4 |
| MS.gene41236.t1 | AT4G38180 | 27.778 | 90 | 65 | 0 | 175 | 264 | 426 | 515 | 8.28e-12 | 68.2 |
| MS.gene41236.t1 | AT4G15090 | 29.515 | 227 | 113 | 11 | 249 | 463 | 557 | 748 | 1.54e-15 | 80.1 |
| MS.gene41236.t1 | AT4G15090 | 29.944 | 177 | 116 | 5 | 3 | 174 | 44 | 217 | 5.18e-13 | 72.0 |
| MS.gene41236.t1 | AT4G15090 | 29.515 | 227 | 113 | 11 | 249 | 463 | 557 | 748 | 1.54e-15 | 80.1 |
| MS.gene41236.t1 | AT4G15090 | 29.944 | 177 | 116 | 5 | 3 | 174 | 44 | 217 | 5.18e-13 | 72.0 |
| MS.gene41236.t1 | AT4G15090 | 29.515 | 227 | 113 | 11 | 249 | 463 | 557 | 748 | 1.54e-15 | 80.1 |
| MS.gene41236.t1 | AT4G15090 | 29.944 | 177 | 116 | 5 | 3 | 174 | 44 | 217 | 5.18e-13 | 72.0 |
| MS.gene41236.t1 | AT4G15090 | 29.515 | 227 | 113 | 11 | 249 | 463 | 557 | 748 | 1.54e-15 | 80.1 |
| MS.gene41236.t1 | AT4G15090 | 29.944 | 177 | 116 | 5 | 3 | 174 | 44 | 217 | 5.18e-13 | 72.0 |
| MS.gene41236.t1 | AT4G15090 | 29.515 | 227 | 113 | 11 | 249 | 463 | 557 | 748 | 1.54e-15 | 80.1 |
| MS.gene41236.t1 | AT4G15090 | 29.944 | 177 | 116 | 5 | 3 | 174 | 44 | 217 | 5.18e-13 | 72.0 |
| MS.gene41236.t1 | AT5G18960 | 42.718 | 103 | 44 | 4 | 9 | 109 | 42 | 131 | 2.62e-14 | 76.3 |
| MS.gene41236.t1 | AT5G18960 | 42.718 | 103 | 44 | 4 | 9 | 109 | 42 | 131 | 2.62e-14 | 76.3 |
| MS.gene41236.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 5.62e-13 | 71.6 |
| MS.gene41236.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 5.90e-13 | 71.6 |
| MS.gene41236.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 8.00e-13 | 71.2 |
| MS.gene41236.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 8.00e-13 | 71.2 |
| MS.gene41236.t1 | AT5G28530 | 27.811 | 169 | 116 | 4 | 8 | 170 | 53 | 221 | 8.24e-13 | 71.2 |
| MS.gene41236.t1 | AT3G06250 | 38.835 | 103 | 48 | 4 | 9 | 109 | 27 | 116 | 4.27e-12 | 68.9 |
| MS.gene41236.t1 | AT3G06250 | 38.835 | 103 | 48 | 4 | 9 | 109 | 27 | 116 | 4.27e-12 | 68.9 |
| MS.gene41236.t1 | AT3G06250 | 38.835 | 103 | 48 | 4 | 9 | 109 | 27 | 116 | 4.27e-12 | 68.9 |
Find 68 sgRNAs with CRISPR-Local
Find 137 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCTTGTATGCAACCGAATT+TGG | 0.167798 | 1.4:-35700821 | MS.gene41236:CDS |
| TAGATGAAGTTCATCAATTT+TGG | 0.174539 | 1.4:-35702007 | MS.gene41236:CDS |
| ATTGATTTGGCTAATGATTC+TGG | 0.243805 | 1.4:-35701669 | MS.gene41236:CDS |
| CAGTTTCAAGTAATGTTTCT+AGG | 0.273436 | 1.4:-35700129 | MS.gene41236:CDS |
| GTTGTCTCAAATTTCATAAA+AGG | 0.301460 | 1.4:-35700283 | MS.gene41236:CDS |
| TATGCTTATCTTCAAATTCA+TGG | 0.305536 | 1.4:+35701769 | None:intergenic |
| TGTAGAAAGTTTGAAACATT+TGG | 0.316097 | 1.4:-35700481 | MS.gene41236:CDS |
| TGGCTTCCAATCAACATTTA+CGG | 0.338693 | 1.4:+35702055 | None:intergenic |
| ATTTGTCGTGGCTCATAAAC+TGG | 0.340582 | 1.4:+35699932 | None:intergenic |
| GTGGCGTTGTGCAAGATGTT+AGG | 0.347695 | 1.4:-35700360 | MS.gene41236:CDS |
| GTCATGAATGCCGTTGTCTT+TGG | 0.359484 | 1.4:+35700165 | None:intergenic |
| TATGCTGCACGTACTGGCTT+TGG | 0.360264 | 1.4:-35701978 | MS.gene41236:CDS |
| CTTGCTTATGCTGCACGTAC+TGG | 0.365082 | 1.4:-35701984 | MS.gene41236:CDS |
| AATTGCATGATTTCCAAATT+CGG | 0.367504 | 1.4:+35700808 | None:intergenic |
| TAGCTTAACAGCGTATTTGA+TGG | 0.383182 | 1.4:-35699894 | MS.gene41236:intron |
| TGTCATGCGTAAGAAAATAA+TGG | 0.385423 | 1.4:-35700203 | MS.gene41236:CDS |
| TGACTACATGGTTGCTCTCT+AGG | 0.386661 | 1.4:+35700004 | None:intergenic |
| ACAAGCACATGAGATTGATT+TGG | 0.396994 | 1.4:-35701682 | MS.gene41236:CDS |
| CTTCGTGTTCTAGACAACTT+TGG | 0.403555 | 1.4:+35700316 | None:intergenic |
| AAACATTACTTGAAACTGTT+GGG | 0.416514 | 1.4:+35700134 | None:intergenic |
| TCAAATTTCATTCCAACCCT+TGG | 0.416794 | 1.4:+35702035 | None:intergenic |
| CTTCTTAAAATATACTTCTC+AGG | 0.433030 | 1.4:+35700403 | None:intergenic |
| ATGTAGATTTGTTTGTTGTA+AGG | 0.434039 | 1.4:-35701907 | MS.gene41236:CDS |
| GAAACATTACTTGAAACTGT+TGG | 0.441612 | 1.4:+35700133 | None:intergenic |
| TGACATCCGTAAATGTTGAT+TGG | 0.442141 | 1.4:-35702061 | MS.gene41236:CDS |
| GCAAGCATGTGTGTTGTCTC+TGG | 0.449397 | 1.4:+35701729 | None:intergenic |
| TGGCGTTGTGCAAGATGTTA+GGG | 0.450029 | 1.4:-35700359 | MS.gene41236:CDS |
| TCTCTGGAGATAGCAGTTCA+TGG | 0.464032 | 1.4:+35701745 | None:intergenic |
| ACTTGAGACACTTGACTACA+TGG | 0.464898 | 1.4:+35699992 | None:intergenic |
| ATCTTGCACAACGCCACTTC+GGG | 0.465364 | 1.4:+35700366 | None:intergenic |
| ATCACACTTACACGTTATGA+TGG | 0.466378 | 1.4:-35701804 | MS.gene41236:CDS |
| AGATTTGTTTGTTGTAAGGA+AGG | 0.482622 | 1.4:-35701903 | MS.gene41236:CDS |
| TAAAATATACTTCTCAGGAA+TGG | 0.483384 | 1.4:+35700408 | None:intergenic |
| CATCTTGCACAACGCCACTT+CGG | 0.498150 | 1.4:+35700365 | None:intergenic |
| CGCAAAAGCGACATAAGAGT+TGG | 0.506849 | 1.4:-35700063 | MS.gene41236:CDS |
| AGTTTCAAGTAATGTTTCTA+GGG | 0.511152 | 1.4:-35700128 | MS.gene41236:CDS |
| AGTGTCTCAAGTATATCATA+TGG | 0.522885 | 1.4:-35699981 | MS.gene41236:CDS |
| AGCATAAACTGATTTGATCC+AGG | 0.534474 | 1.4:+35700939 | None:intergenic |
| GGTCGATGGAGTATCTTGTT+CGG | 0.535349 | 1.4:-35699960 | MS.gene41236:CDS |
| CAACTTATGAGCACACATGC+AGG | 0.539062 | 1.4:-35701624 | MS.gene41236:CDS |
| GTTGATTGGAAGCCAAGGGT+TGG | 0.540661 | 1.4:-35702047 | MS.gene41236:CDS |
| TACACGTTATGATGGGAAGT+TGG | 0.549441 | 1.4:-35701796 | MS.gene41236:CDS |
| CAAGTATATCATATGGTCGA+TGG | 0.554858 | 1.4:-35699974 | MS.gene41236:CDS |
| TATGAGCCACGACAAATACA+AGG | 0.558713 | 1.4:-35699926 | MS.gene41236:CDS |
| TGAGTCCCTTGTATTTGTCG+TGG | 0.560216 | 1.4:+35699920 | None:intergenic |
| GATTTGTTTGTTGTAAGGAA+GGG | 0.580884 | 1.4:-35701902 | MS.gene41236:CDS |
| CTACATGGTTGCTCTCTAGG+TGG | 0.583984 | 1.4:+35700007 | None:intergenic |
| AGTCCTCACATAAGCTTGCA+AGG | 0.585698 | 1.4:-35700723 | MS.gene41236:intron |
| ATGATCTTCATGATAACACC+TGG | 0.589928 | 1.4:-35700957 | MS.gene41236:CDS |
| AACTTATGAGCACACATGCA+GGG | 0.592671 | 1.4:-35701623 | MS.gene41236:CDS |
| AAATGTTGATTGGAAGCCAA+GGG | 0.593917 | 1.4:-35702051 | MS.gene41236:CDS |
| GCAGGGCATAGATCTAATGT+TGG | 0.596510 | 1.4:-35701606 | MS.gene41236:CDS |
| TAAATGTTGATTGGAAGCCA+AGG | 0.602713 | 1.4:-35702052 | MS.gene41236:CDS |
| GCAAGGTCTGTCTCACTAAG+TGG | 0.604947 | 1.4:+35699778 | None:intergenic |
| TTTCATAAAAGGTGCAGCTG+AGG | 0.605578 | 1.4:-35700272 | MS.gene41236:CDS |
| TGAGGCAACACCTTGTGAAG+AGG | 0.611556 | 1.4:-35700254 | MS.gene41236:CDS |
| TCACACTTACACGTTATGAT+GGG | 0.613020 | 1.4:-35701803 | MS.gene41236:CDS |
| ATGAAGAAAGCAGTAACACT+TGG | 0.614713 | 1.4:-35700889 | MS.gene41236:CDS |
| CCAATCAGTGTAATGCTGCA+AGG | 0.621517 | 1.4:+35699761 | None:intergenic |
| CGGTCAAACGCCAAAGACAA+CGG | 0.631949 | 1.4:-35700175 | MS.gene41236:CDS |
| TAATGTTGGATTTACACGAG+TGG | 0.643534 | 1.4:-35701592 | MS.gene41236:CDS |
| GGCGTTGTGCAAGATGTTAG+GGG | 0.670016 | 1.4:-35700358 | MS.gene41236:CDS |
| TAACCTTGCAAGCTTATGTG+AGG | 0.674762 | 1.4:+35700720 | None:intergenic |
| TGGACAAGAGATGCCCGAAG+TGG | 0.678714 | 1.4:-35700379 | MS.gene41236:CDS |
| GCGTTGTGCAAGATGTTAGG+GGG | 0.680564 | 1.4:-35700357 | MS.gene41236:CDS |
| TGTCGTGGCTCATAAACTGG+AGG | 0.687831 | 1.4:+35699935 | None:intergenic |
| GTAAGAAAATAATGGAACGT+CGG | 0.713792 | 1.4:-35700195 | MS.gene41236:CDS |
| ATGAGCCACGACAAATACAA+GGG | 0.736791 | 1.4:-35699925 | MS.gene41236:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATGCTATTAAAAAAAAAT+GGG | - | chr1.4:35700904-35700923 | MS.gene41236:CDS | 10.0% |
| !! | TTTATGCTATTAAAAAAAAA+TGG | - | chr1.4:35700903-35700922 | MS.gene41236:CDS | 10.0% |
| !!! | TTTTTTAAAAAAAATTATGC+AGG | - | chr1.4:35702024-35702043 | MS.gene41236:CDS | 10.0% |
| !!! | AATAACACTATCCAATATTT+TGG | + | chr1.4:35701295-35701314 | None:intergenic | 20.0% |
| !!! | AATTCTTCAAACATTTTGAA+CGG | - | chr1.4:35701038-35701057 | MS.gene41236:intron | 20.0% |
| ! | AAACATTACTTGAAACTGTT+GGG | + | chr1.4:35701696-35701715 | None:intergenic | 25.0% |
| ! | AATTGCATGATTTCCAAATT+CGG | + | chr1.4:35701022-35701041 | None:intergenic | 25.0% |
| ! | ATGTGAATATGTCATTACTA+TGG | - | chr1.4:35701261-35701280 | MS.gene41236:intron | 25.0% |
| ! | CTTCTTAAAATATACTTCTC+AGG | + | chr1.4:35701427-35701446 | None:intergenic | 25.0% |
| ! | GTTGTCTCAAATTTCATAAA+AGG | - | chr1.4:35701544-35701563 | MS.gene41236:intron | 25.0% |
| ! | TAAAAGAAGACAAAGAAGTA+TGG | - | chr1.4:35700277-35700296 | MS.gene41236:CDS | 25.0% |
| ! | TAAAATATACTTCTCAGGAA+TGG | + | chr1.4:35701422-35701441 | None:intergenic | 25.0% |
| ! | TATGCGAACAAAAATAAAGA+CGG | - | chr1.4:35699885-35699904 | MS.gene41236:intron | 25.0% |
| ! | TATGCTTATCTTCAAATTCA+TGG | + | chr1.4:35700061-35700080 | None:intergenic | 25.0% |
| ! | TCATCATAAGTGTAAATGTA+AGG | + | chr1.4:35701989-35702008 | None:intergenic | 25.0% |
| ! | TGTGAATATGTCATTACTAT+GGG | - | chr1.4:35701262-35701281 | MS.gene41236:intron | 25.0% |
| !! | AACAAATGACAAATGTGTTT+TGG | - | chr1.4:35700393-35700412 | MS.gene41236:CDS | 25.0% |
| !! | AGTTTCAAGTAATGTTTCTA+GGG | - | chr1.4:35701699-35701718 | MS.gene41236:CDS | 25.0% |
| !! | ATATTTTCAACGACAATTGT+TGG | - | chr1.4:35700328-35700347 | MS.gene41236:CDS | 25.0% |
| !! | ATTCTTCAAACATTTTGAAC+GGG | - | chr1.4:35701039-35701058 | MS.gene41236:intron | 25.0% |
| !! | TAGATGAAGTTCATCAATTT+TGG | - | chr1.4:35699820-35699839 | MS.gene41236:intron | 25.0% |
| !! | TGTAGAAAGTTTGAAACATT+TGG | - | chr1.4:35701346-35701365 | MS.gene41236:intron | 25.0% |
| !!! | AGAAGTATATTTTAAGAAGG+TGG | - | chr1.4:35701428-35701447 | MS.gene41236:intron | 25.0% |
| !!! | ATGTAGATTTGTTTGTTGTA+AGG | - | chr1.4:35699920-35699939 | MS.gene41236:CDS | 25.0% |
| !!! | CTGAGAAGTATATTTTAAGA+AGG | - | chr1.4:35701425-35701444 | MS.gene41236:intron | 25.0% |
| !!! | TAAGGATAGTCACTTTTAAA+AGG | + | chr1.4:35701971-35701990 | None:intergenic | 25.0% |
| AGACAAGTGATTCATTTAAG+TGG | - | chr1.4:35700576-35700595 | MS.gene41236:intron | 30.0% | |
| AGTGTCTCAAGTATATCATA+TGG | - | chr1.4:35701846-35701865 | MS.gene41236:CDS | 30.0% | |
| CAAAATGGAATTAAACACCT+TGG | - | chr1.4:35700737-35700756 | MS.gene41236:CDS | 30.0% | |
| CTTTCTACAACTACAAGAAA+TGG | + | chr1.4:35701335-35701354 | None:intergenic | 30.0% | |
| GAAACATTACTTGAAACTGT+TGG | + | chr1.4:35701697-35701716 | None:intergenic | 30.0% | |
| GTGAATATGTCATTACTATG+GGG | - | chr1.4:35701263-35701282 | MS.gene41236:intron | 30.0% | |
| TGAATATGTCATTACTATGG+GGG | - | chr1.4:35701264-35701283 | MS.gene41236:intron | 30.0% | |
| TGATATGCATGAAAGAAAGA+TGG | + | chr1.4:35700359-35700378 | None:intergenic | 30.0% | |
| TGTCATGCGTAAGAAAATAA+TGG | - | chr1.4:35701624-35701643 | MS.gene41236:CDS | 30.0% | |
| TTTCTTTCATGCATATCAGA+TGG | - | chr1.4:35700361-35700380 | MS.gene41236:CDS | 30.0% | |
| ! | ATTTTGGATTACGCGTATTT+TGG | - | chr1.4:35700431-35700450 | MS.gene41236:CDS | 30.0% |
| ! | CAGTTTCAAGTAATGTTTCT+AGG | - | chr1.4:35701698-35701717 | MS.gene41236:CDS | 30.0% |
| ! | GTAAGAAAATAATGGAACGT+CGG | - | chr1.4:35701632-35701651 | MS.gene41236:CDS | 30.0% |
| ! | GTGTGATGCAAATATGATTT+TGG | - | chr1.4:35700415-35700434 | MS.gene41236:CDS | 30.0% |
| !! | AGATTTGTTTGTTGTAAGGA+AGG | - | chr1.4:35699924-35699943 | MS.gene41236:CDS | 30.0% |
| !! | ATTGATTTGGCTAATGATTC+TGG | - | chr1.4:35700158-35700177 | MS.gene41236:CDS | 30.0% |
| !! | GATTTGTTTGTTGTAAGGAA+GGG | - | chr1.4:35699925-35699944 | MS.gene41236:CDS | 30.0% |
| !!! | GGTTTTTTCTTGAATATCGT+TGG | + | chr1.4:35701727-35701746 | None:intergenic | 30.0% |
| AAACCAGAAAACAAAGCAAG+AGG | + | chr1.4:35700506-35700525 | None:intergenic | 35.0% | |
| ACAAGCACATGAGATTGATT+TGG | - | chr1.4:35700145-35700164 | MS.gene41236:CDS | 35.0% | |
| ATCACACTTACACGTTATGA+TGG | - | chr1.4:35700023-35700042 | MS.gene41236:CDS | 35.0% | |
| ATCTTGTATGCAACCGAATT+TGG | - | chr1.4:35701006-35701025 | MS.gene41236:intron | 35.0% | |
| ATGAAGAAAGCAGTAACACT+TGG | - | chr1.4:35700938-35700957 | MS.gene41236:CDS | 35.0% | |
| ATGATCTTCATGATAACACC+TGG | - | chr1.4:35700870-35700889 | MS.gene41236:CDS | 35.0% | |
| CAAGTATATCATATGGTCGA+TGG | - | chr1.4:35701853-35701872 | MS.gene41236:CDS | 35.0% | |
| TAATGTTGGATTTACACGAG+TGG | - | chr1.4:35700235-35700254 | MS.gene41236:CDS | 35.0% | |
| TAGCTTAACAGCGTATTTGA+TGG | - | chr1.4:35701933-35701952 | MS.gene41236:CDS | 35.0% | |
| TCAAATTTCATTCCAACCCT+TGG | + | chr1.4:35699795-35699814 | None:intergenic | 35.0% | |
| TCACACTTACACGTTATGAT+GGG | - | chr1.4:35700024-35700043 | MS.gene41236:CDS | 35.0% | |
| TCACCAATACTGATCCAAAT+GGG | - | chr1.4:35701142-35701161 | MS.gene41236:intron | 35.0% | |
| TCTACAACTACAAGAAATGG+AGG | + | chr1.4:35701332-35701351 | None:intergenic | 35.0% | |
| TGACATCCGTAAATGTTGAT+TGG | - | chr1.4:35699766-35699785 | MS.gene41236:CDS | 35.0% | |
| TGGCTTCCAATCAACATTTA+CGG | + | chr1.4:35699775-35699794 | None:intergenic | 35.0% | |
| ! | AAATGTTGATTGGAAGCCAA+GGG | - | chr1.4:35699776-35699795 | MS.gene41236:CDS | 35.0% |
| ! | AGACAAAGAAGTATGGTGTA+CGG | - | chr1.4:35700284-35700303 | MS.gene41236:CDS | 35.0% |
| ! | TAAATGTTGATTGGAAGCCA+AGG | - | chr1.4:35699775-35699794 | MS.gene41236:CDS | 35.0% |
| !! | AGCATAAACTGATTTGATCC+AGG | + | chr1.4:35700891-35700910 | None:intergenic | 35.0% |
| !!! | ATTTTGAGATCCTCTTCACA+AGG | + | chr1.4:35701586-35701605 | None:intergenic | 35.0% |
| !!! | GATTCAGACTCTTTTTTCTC+TGG | + | chr1.4:35701238-35701257 | None:intergenic | 35.0% |
| !!! | TTTTGGTGATGTTGTGTCAT+TGG | - | chr1.4:35700448-35700467 | MS.gene41236:CDS | 35.0% |
| AACTTATGAGCACACATGCA+GGG | - | chr1.4:35700204-35700223 | MS.gene41236:CDS | 40.0% | |
| ACACCTTGGAAACAAGATGA+AGG | - | chr1.4:35700751-35700770 | MS.gene41236:CDS | 40.0% | |
| ACTTGAGACACTTGACTACA+TGG | + | chr1.4:35701838-35701857 | None:intergenic | 40.0% | |
| ACTTGGCACTTGTGTCAAAA+TGG | - | chr1.4:35700722-35700741 | MS.gene41236:intron | 40.0% | |
| ATGAGCCACGACAAATACAA+GGG | - | chr1.4:35701902-35701921 | MS.gene41236:CDS | 40.0% | |
| ATTTGTCGTGGCTCATAAAC+TGG | + | chr1.4:35701898-35701917 | None:intergenic | 40.0% | |
| CACCAATACTGATCCAAATG+GGG | - | chr1.4:35701143-35701162 | MS.gene41236:intron | 40.0% | |
| CACCTTGGAAACAAGATGAA+GGG | - | chr1.4:35700752-35700771 | MS.gene41236:CDS | 40.0% | |
| GTCACCAATACTGATCCAAA+TGG | - | chr1.4:35701141-35701160 | MS.gene41236:intron | 40.0% | |
| GTGTGTATACTTTCCCCATT+TGG | + | chr1.4:35701159-35701178 | None:intergenic | 40.0% | |
| TAACCTTGCAAGCTTATGTG+AGG | + | chr1.4:35701110-35701129 | None:intergenic | 40.0% | |
| TATGAGCCACGACAAATACA+AGG | - | chr1.4:35701901-35701920 | MS.gene41236:CDS | 40.0% | |
| TGGGGGAACTTCCAAAATAT+TGG | - | chr1.4:35701281-35701300 | MS.gene41236:intron | 40.0% | |
| TTCCCCATTTGGATCAGTAT+TGG | + | chr1.4:35701148-35701167 | None:intergenic | 40.0% | |
| ! | CTTCGTGTTCTAGACAACTT+TGG | + | chr1.4:35701514-35701533 | None:intergenic | 40.0% |
| ! | TACACGTTATGATGGGAAGT+TGG | - | chr1.4:35700031-35700050 | MS.gene41236:CDS | 40.0% |
| ! | TTTCATAAAAGGTGCAGCTG+AGG | - | chr1.4:35701555-35701574 | MS.gene41236:intron | 40.0% |
| !! | TTTCTGGTTTCAACCACTAC+CGG | - | chr1.4:35700516-35700535 | MS.gene41236:intron | 40.0% |
| !!! | AGACCTCTTGCTTTGTTTTC+TGG | - | chr1.4:35700500-35700519 | MS.gene41236:intron | 40.0% |
| AAGCAAGAGGTCTATTCGCA+TGG | + | chr1.4:35700493-35700512 | None:intergenic | 45.0% | |
| AGTCCTCACATAAGCTTGCA+AGG | - | chr1.4:35701104-35701123 | MS.gene41236:intron | 45.0% | |
| AGTGCCAAGTGCATAAACCA+TGG | + | chr1.4:35700712-35700731 | None:intergenic | 45.0% | |
| CAACTTATGAGCACACATGC+AGG | - | chr1.4:35700203-35700222 | MS.gene41236:CDS | 45.0% | |
| CATAAACCATGGTGAGTCTC+GGG | + | chr1.4:35700701-35700720 | None:intergenic | 45.0% | |
| CGCAAAAGCGACATAAGAGT+TGG | - | chr1.4:35701764-35701783 | MS.gene41236:CDS | 45.0% | |
| CTCACCATGGTTTATGCACT+TGG | - | chr1.4:35700705-35700724 | MS.gene41236:intron | 45.0% | |
| CTTGGAAACAAGATGAAGGG+AGG | - | chr1.4:35700755-35700774 | MS.gene41236:CDS | 45.0% | |
| GACCCAAGCTGCTTCAAAAT+CGG | + | chr1.4:35700834-35700853 | None:intergenic | 45.0% | |
| GCAGGGCATAGATCTAATGT+TGG | - | chr1.4:35700221-35700240 | MS.gene41236:CDS | 45.0% | |
| GCATAAACCATGGTGAGTCT+CGG | + | chr1.4:35700702-35700721 | None:intergenic | 45.0% | |
| GTCATGAATGCCGTTGTCTT+TGG | + | chr1.4:35701665-35701684 | None:intergenic | 45.0% | |
| TGACTACATGGTTGCTCTCT+AGG | + | chr1.4:35701826-35701845 | None:intergenic | 45.0% | |
| TGAGTCCCTTGTATTTGTCG+TGG | + | chr1.4:35701910-35701929 | None:intergenic | 45.0% | |
| TGATCGGTGAAGACAGTCTT+TGG | + | chr1.4:35700641-35700660 | None:intergenic | 45.0% | |
| TGGCGTTGTGCAAGATGTTA+GGG | - | chr1.4:35701468-35701487 | MS.gene41236:intron | 45.0% | |
| TGTCTTCACCGATCAAGATC+CGG | - | chr1.4:35700646-35700665 | MS.gene41236:intron | 45.0% | |
| ! | CTCCCTTCATCTTGTTTCCA+AGG | + | chr1.4:35700757-35700776 | None:intergenic | 45.0% |
| ! | GGTCGATGGAGTATCTTGTT+CGG | - | chr1.4:35701867-35701886 | MS.gene41236:CDS | 45.0% |
| ! | TCTCTGGAGATAGCAGTTCA+TGG | + | chr1.4:35700085-35700104 | None:intergenic | 45.0% |
| ! | TGCGATGCTCTTTTTGTGCT+AGG | + | chr1.4:35701748-35701767 | None:intergenic | 45.0% |
| !! | TTCTGGTTTCAACCACTACC+GGG | - | chr1.4:35700517-35700536 | MS.gene41236:intron | 45.0% |
| !!! | AAGCCGATTTTGAAGCAGCT+TGG | - | chr1.4:35700828-35700847 | MS.gene41236:CDS | 45.0% |
| !!! | AGCCGATTTTGAAGCAGCTT+GGG | - | chr1.4:35700829-35700848 | MS.gene41236:CDS | 45.0% |
| ATCTTGCACAACGCCACTTC+GGG | + | chr1.4:35701464-35701483 | None:intergenic | 50.0% | |
| CACCAAAAATGACCGAACCC+CGG | + | chr1.4:35700538-35700557 | None:intergenic | 50.0% | |
| CATCACTTCAGCAAGTGCCT+TGG | + | chr1.4:35700678-35700697 | None:intergenic | 50.0% | |
| CATCTTGCACAACGCCACTT+CGG | + | chr1.4:35701465-35701484 | None:intergenic | 50.0% | |
| CGGTCAAACGCCAAAGACAA+CGG | - | chr1.4:35701652-35701671 | MS.gene41236:CDS | 50.0% | |
| CTACATGGTTGCTCTCTAGG+TGG | + | chr1.4:35701823-35701842 | None:intergenic | 50.0% | |
| CTTGCTTATGCTGCACGTAC+TGG | - | chr1.4:35699843-35699862 | MS.gene41236:intron | 50.0% | |
| GCAAGATGTTAGGGGGAAGA+CGG | - | chr1.4:35701477-35701496 | MS.gene41236:intron | 50.0% | |
| GCAAGCATGTGTGTTGTCTC+TGG | + | chr1.4:35700101-35700120 | None:intergenic | 50.0% | |
| GCAAGGTCTGTCTCACTAAG+TGG | + | chr1.4:35702052-35702071 | None:intergenic | 50.0% | |
| GCGTTGTGCAAGATGTTAGG+GGG | - | chr1.4:35701470-35701489 | MS.gene41236:intron | 50.0% | |
| GGCGTTGTGCAAGATGTTAG+GGG | - | chr1.4:35701469-35701488 | MS.gene41236:intron | 50.0% | |
| GTGGCGTTGTGCAAGATGTT+AGG | - | chr1.4:35701467-35701486 | MS.gene41236:intron | 50.0% | |
| GTTGATTGGAAGCCAAGGGT+TGG | - | chr1.4:35699780-35699799 | MS.gene41236:CDS | 50.0% | |
| TGAGGCAACACCTTGTGAAG+AGG | - | chr1.4:35701573-35701592 | MS.gene41236:CDS | 50.0% | |
| TGTCGTGGCTCATAAACTGG+AGG | + | chr1.4:35701895-35701914 | None:intergenic | 50.0% | |
| TTTCAACCACTACCGGGGTT+CGG | - | chr1.4:35700523-35700542 | MS.gene41236:intron | 50.0% | |
| ! | TCTGGTTTCAACCACTACCG+GGG | - | chr1.4:35700518-35700537 | MS.gene41236:intron | 50.0% |
| !! | TACCGGGGTTCGGTCATTTT+TGG | - | chr1.4:35700533-35700552 | MS.gene41236:intron | 50.0% |
| !! | TATGCTGCACGTACTGGCTT+TGG | - | chr1.4:35699849-35699868 | MS.gene41236:intron | 50.0% |
| AAATGACCGAACCCCGGTAG+TGG | + | chr1.4:35700532-35700551 | None:intergenic | 55.0% | |
| AGTATGGTGTACGGCGAAGC+TGG | - | chr1.4:35700293-35700312 | MS.gene41236:CDS | 55.0% | |
| CACCGATCAAGATCCGGCAA+TGG | - | chr1.4:35700652-35700671 | MS.gene41236:intron | 55.0% | |
| GGCCATTGCCGGATCTTGAT+CGG | + | chr1.4:35700657-35700676 | None:intergenic | 55.0% | |
| TCAAGATCCGGCAATGGCCA+AGG | - | chr1.4:35700658-35700677 | MS.gene41236:intron | 55.0% | |
| TGGACAAGAGATGCCCGAAG+TGG | - | chr1.4:35701448-35701467 | MS.gene41236:intron | 55.0% | |
| GCAAGTGCCTTGGCCATTGC+CGG | + | chr1.4:35700668-35700687 | None:intergenic | 60.0% | |
| GTGATGCCCGAGACTCACCA+TGG | - | chr1.4:35700692-35700711 | MS.gene41236:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 35699765 | 35702084 | 35699765 | ID=MS.gene41236 |
| chr1.4 | mRNA | 35699765 | 35702084 | 35699765 | ID=MS.gene41236.t1;Parent=MS.gene41236 |
| chr1.4 | exon | 35701556 | 35702084 | 35701556 | ID=MS.gene41236.t1.exon1;Parent=MS.gene41236.t1 |
| chr1.4 | CDS | 35701556 | 35702084 | 35701556 | ID=cds.MS.gene41236.t1;Parent=MS.gene41236.t1 |
| chr1.4 | exon | 35700724 | 35701003 | 35700724 | ID=MS.gene41236.t1.exon2;Parent=MS.gene41236.t1 |
| chr1.4 | CDS | 35700724 | 35701003 | 35700724 | ID=cds.MS.gene41236.t1;Parent=MS.gene41236.t1 |
| chr1.4 | exon | 35699895 | 35700504 | 35699895 | ID=MS.gene41236.t1.exon3;Parent=MS.gene41236.t1 |
| chr1.4 | CDS | 35699895 | 35700504 | 35699895 | ID=cds.MS.gene41236.t1;Parent=MS.gene41236.t1 |
| chr1.4 | exon | 35699765 | 35699803 | 35699765 | ID=MS.gene41236.t1.exon4;Parent=MS.gene41236.t1 |
| chr1.4 | CDS | 35699765 | 35699803 | 35699765 | ID=cds.MS.gene41236.t1;Parent=MS.gene41236.t1 |
| Gene Sequence |
| Protein sequence |
