Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41267.t1 | XP_024631418.1 | 86.7 | 249 | 33 | 0 | 1 | 249 | 1 | 249 | 1.10E-113 | 419.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41267.t1 | Q9M1K1 | 42.2 | 249 | 133 | 4 | 1 | 240 | 1 | 247 | 3.1e-40 | 166.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41267.t1 | A0A396JNS6 | 87.3 | 244 | 31 | 0 | 1 | 244 | 1 | 244 | 4.1e-110 | 407.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene41267.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41267.t1 | MTR_1g048720 | 86.885 | 244 | 32 | 0 | 1 | 244 | 1 | 244 | 1.72e-153 | 427 |
MS.gene41267.t1 | MTR_1g048720 | 86.475 | 244 | 32 | 1 | 1 | 244 | 1 | 243 | 6.55e-151 | 420 |
MS.gene41267.t1 | MTR_1g048710 | 83.936 | 249 | 31 | 2 | 1 | 249 | 1 | 240 | 3.14e-141 | 395 |
MS.gene41267.t1 | MTR_1g048720 | 87.215 | 219 | 28 | 0 | 1 | 219 | 1 | 219 | 5.12e-139 | 389 |
MS.gene41267.t1 | MTR_1g048720 | 86.758 | 219 | 28 | 1 | 1 | 219 | 1 | 218 | 1.53e-136 | 383 |
MS.gene41267.t1 | MTR_1g048750 | 81.651 | 218 | 32 | 1 | 1 | 218 | 1 | 210 | 1.77e-126 | 359 |
MS.gene41267.t1 | MTR_7g090410 | 58.367 | 245 | 95 | 6 | 1 | 241 | 1 | 242 | 3.71e-65 | 203 |
MS.gene41267.t1 | MTR_0007s0330 | 30.539 | 167 | 104 | 5 | 65 | 228 | 6 | 163 | 2.46e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41267.t1 | AT3G56970 | 42.570 | 249 | 132 | 5 | 1 | 240 | 1 | 247 | 1.18e-54 | 176 |
MS.gene41267.t1 | AT3G56980 | 39.844 | 256 | 138 | 3 | 1 | 242 | 1 | 254 | 1.17e-45 | 153 |
MS.gene41267.t1 | AT2G41240 | 37.255 | 255 | 130 | 7 | 1 | 242 | 1 | 238 | 1.33e-42 | 145 |
MS.gene41267.t1 | AT2G41240 | 36.863 | 255 | 130 | 8 | 1 | 242 | 1 | 237 | 3.33e-40 | 139 |
MS.gene41267.t1 | AT5G04150 | 43.169 | 183 | 96 | 4 | 60 | 237 | 78 | 257 | 3.85e-34 | 124 |
MS.gene41267.t1 | AT5G04150 | 44.172 | 163 | 86 | 2 | 60 | 219 | 78 | 238 | 8.06e-34 | 122 |
Find 45 sgRNAs with CRISPR-Local
Find 93 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTAATTCCAGTATGTATTTA+AGG | 0.091448 | 1.4:+34690474 | None:intergenic |
AGTGACCCTGAAGCTGTTTA+TGG | 0.179245 | 1.4:+34690927 | None:intergenic |
TGAAGCTGTTTATGGGTTAT+TGG | 0.224116 | 1.4:+34690935 | None:intergenic |
GAGCTTCTCATTTAGAATTT+CGG | 0.255939 | 1.4:+34689216 | None:intergenic |
CTTCTATAATTTGCATTTCC+AGG | 0.265122 | 1.4:-34690168 | MS.gene41267:intron |
TTCTGAGATCTTGATATGTT+TGG | 0.287728 | 1.4:-34690249 | MS.gene41267:CDS |
TGAGAAGCTCTTATCAATAA+TGG | 0.319674 | 1.4:-34689203 | MS.gene41267:CDS |
GTTTCTTCATCTCAGACCTT+TGG | 0.353556 | 1.4:-34690200 | MS.gene41267:CDS |
CAGAAGAAATTGAGCATTCC+GGG | 0.366600 | 1.4:-34690512 | MS.gene41267:CDS |
AAAAGTCCTTAAATACATAC+TGG | 0.376466 | 1.4:-34690480 | MS.gene41267:CDS |
GCAGAAGAAATTGAGCATTC+CGG | 0.378244 | 1.4:-34690513 | MS.gene41267:intron |
AATAACCCATAAACAGCTTC+AGG | 0.395318 | 1.4:-34690933 | MS.gene41267:CDS |
TCTTCATCTCAGACCTTTGG+AGG | 0.399420 | 1.4:-34690197 | MS.gene41267:CDS |
GTCACTGCTTGTGGACTGTA+AGG | 0.403959 | 1.4:+34690832 | None:intergenic |
AGTACCATTTGATCTGAAAC+AGG | 0.414053 | 1.4:+34690716 | None:intergenic |
GTGACCCTGAAGCTGTTTAT+GGG | 0.414301 | 1.4:+34690928 | None:intergenic |
ATGGGTTATTGGCTCTTCAA+AGG | 0.431180 | 1.4:+34690946 | None:intergenic |
GCTCTTATCAATAATGGATA+AGG | 0.434619 | 1.4:-34689197 | MS.gene41267:CDS |
TCTTCCTGTTTCAGATCAAA+TGG | 0.439923 | 1.4:-34690720 | MS.gene41267:intron |
TGGGTTATTGGCTCTTCAAA+GGG | 0.480765 | 1.4:+34690947 | None:intergenic |
AAGAAACATTAAGTAGCAAA+AGG | 0.489430 | 1.4:+34690216 | None:intergenic |
CATATCAAGATCTCAGAAAG+TGG | 0.493296 | 1.4:+34690254 | None:intergenic |
CGAGGGACTAATTAAGAGAA+AGG | 0.497408 | 1.4:-34690441 | MS.gene41267:CDS |
ACAAATTATTGATCTTCTTG+CGG | 0.529574 | 1.4:+34690762 | None:intergenic |
CATGCCAAGGTCACTGCTTG+TGG | 0.530365 | 1.4:+34690823 | None:intergenic |
TTGATATGTTTGGAAAATGA+TGG | 0.537710 | 1.4:-34690239 | MS.gene41267:CDS |
AAGAAACATAGTTACAACTC+TGG | 0.547575 | 1.4:-34690353 | MS.gene41267:CDS |
AGTGTAACATGAAATCTGAA+TGG | 0.555088 | 1.4:+34690289 | None:intergenic |
CATCCAATTGTTGAAAACAT+AGG | 0.558093 | 1.4:+34690971 | None:intergenic |
TTATCAATAATGGATAAGGA+AGG | 0.562276 | 1.4:-34689193 | MS.gene41267:CDS |
CTTCATCTCAGACCTTTGGA+GGG | 0.563936 | 1.4:-34690196 | MS.gene41267:CDS |
ATGATCACCTCATCTACTTG+TGG | 0.565875 | 1.4:+34690395 | None:intergenic |
TCTCAGAAAGTGGAATCTTG+TGG | 0.569417 | 1.4:+34690264 | None:intergenic |
ATAACCCATAAACAGCTTCA+GGG | 0.574272 | 1.4:-34690932 | MS.gene41267:CDS |
CCAATTGTTGAAAACATAGG+AGG | 0.582074 | 1.4:+34690974 | None:intergenic |
ATAGAAGACTCTCCCTCCAA+AGG | 0.594272 | 1.4:+34690184 | None:intergenic |
AGGAAGAAGTGAACGAAGTG+AGG | 0.599839 | 1.4:+34690736 | None:intergenic |
TATCAATAATGGATAAGGAA+GGG | 0.600012 | 1.4:-34689192 | MS.gene41267:CDS |
CACAAGCAGTGACCTTGGCA+TGG | 0.603384 | 1.4:-34690822 | MS.gene41267:CDS |
CAGTCCACAAGCAGTGACCT+TGG | 0.604161 | 1.4:-34690827 | MS.gene41267:CDS |
GAATTACAGAAGCAAGTCGA+GGG | 0.637852 | 1.4:-34690458 | MS.gene41267:CDS |
TCACTGCTTGTGGACTGTAA+GGG | 0.641603 | 1.4:+34690833 | None:intergenic |
ACTTTCTCCACAAGTAGATG+AGG | 0.642125 | 1.4:-34690402 | MS.gene41267:CDS |
CAAGCTTCTTGACCATGCCA+AGG | 0.656633 | 1.4:+34690810 | None:intergenic |
GGAATTACAGAAGCAAGTCG+AGG | 0.672305 | 1.4:-34690459 | MS.gene41267:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ACATAAATATATAGAAATTT+TGG | + | chr1.4:34690680-34690699 | None:intergenic | 10.0% |
!!! | TAATATAATGAGTATTTTTT+TGG | + | chr1.4:34690840-34690859 | None:intergenic | 10.0% |
!! | AAATAATGAAACAAAAATGT+AGG | - | chr1.4:34690496-34690515 | MS.gene41267:CDS | 15.0% |
!! | GTGATTAATTATTTGTATAA+TGG | + | chr1.4:34690554-34690573 | None:intergenic | 15.0% |
!! | TTTGTCATTGTAATATTTAT+AGG | + | chr1.4:34690461-34690480 | None:intergenic | 15.0% |
!!! | AATTAATTAATAGTTCCTTT+TGG | - | chr1.4:34690859-34690878 | MS.gene41267:CDS | 15.0% |
!!! | ATTAATTAATAGTTCCTTTT+GGG | - | chr1.4:34690860-34690879 | MS.gene41267:CDS | 15.0% |
!!! | ATTTAAAGTAATATCGAAAA+AGG | + | chr1.4:34689565-34689584 | None:intergenic | 15.0% |
!!! | TTTAAAGTAATATCGAAAAA+GGG | + | chr1.4:34689564-34689583 | None:intergenic | 15.0% |
!!! | TTTTATTAATAGTTCCTTTT+GGG | - | chr1.4:34690883-34690902 | MS.gene41267:CDS | 15.0% |
!! | AACTATTAATAAAACCCAAA+AGG | + | chr1.4:34690877-34690896 | None:intergenic | 20.0% |
!! | AAGACTTTACTCAATAATAT+TGG | + | chr1.4:34690059-34690078 | None:intergenic | 20.0% |
!! | ATATATAAAGAAATGAACGA+AGG | + | chr1.4:34689480-34689499 | None:intergenic | 20.0% |
!! | TTCGATATTACTTTAAATTG+TGG | - | chr1.4:34689567-34689586 | MS.gene41267:intron | 20.0% |
!!! | GTTTTATTAATAGTTCCTTT+TGG | - | chr1.4:34690882-34690901 | MS.gene41267:CDS | 20.0% |
!!! | TTTTGGTTTTTTTTTTGTAG+TGG | + | chr1.4:34690823-34690842 | None:intergenic | 20.0% |
! | AAAAGTCCTTAAATACATAC+TGG | - | chr1.4:34689677-34689696 | MS.gene41267:intron | 25.0% |
! | AAGAAACATTAAGTAGCAAA+AGG | + | chr1.4:34689944-34689963 | None:intergenic | 25.0% |
! | ACAAATTATTGATCTTCTTG+CGG | + | chr1.4:34689398-34689417 | None:intergenic | 25.0% |
! | GTAATTCCAGTATGTATTTA+AGG | + | chr1.4:34689686-34689705 | None:intergenic | 25.0% |
! | TTGATATGTTTGGAAAATGA+TGG | - | chr1.4:34689918-34689937 | MS.gene41267:intron | 25.0% |
!!! | TATCAATAATGGATAAGGAA+GGG | - | chr1.4:34690965-34690984 | MS.gene41267:CDS | 25.0% |
!!! | TTATCAATAATGGATAAGGA+AGG | - | chr1.4:34690964-34690983 | MS.gene41267:CDS | 25.0% |
AAGAAACATAGTTACAACTC+TGG | - | chr1.4:34689804-34689823 | MS.gene41267:intron | 30.0% | |
ACAAAAAATAGCCAATGCAT+TGG | + | chr1.4:34690437-34690456 | None:intergenic | 30.0% | |
AGTGTAACATGAAATCTGAA+TGG | + | chr1.4:34689871-34689890 | None:intergenic | 30.0% | |
ATAAAGAAATGAACGAAGGA+AGG | + | chr1.4:34689476-34689495 | None:intergenic | 30.0% | |
ATATTTATGTGTCAGTCCAA+GGG | - | chr1.4:34690690-34690709 | MS.gene41267:intron | 30.0% | |
CATCCAATTGTTGAAAACAT+AGG | + | chr1.4:34689189-34689208 | None:intergenic | 30.0% | |
GACAATGCATAATATATGCA+AGG | - | chr1.4:34690778-34690797 | MS.gene41267:CDS | 30.0% | |
TAAAGAAATGAACGAAGGAA+GGG | + | chr1.4:34689475-34689494 | None:intergenic | 30.0% | |
TACTGTAAAATTAACACACC+TGG | + | chr1.4:34690010-34690029 | None:intergenic | 30.0% | |
TATATTTATGTGTCAGTCCA+AGG | - | chr1.4:34690689-34690708 | MS.gene41267:intron | 30.0% | |
TGAGAAGCTCTTATCAATAA+TGG | - | chr1.4:34690954-34690973 | MS.gene41267:CDS | 30.0% | |
TTTATCTATGACCAATGCAT+TGG | - | chr1.4:34690423-34690442 | MS.gene41267:CDS | 30.0% | |
! | CTATGTTTTCAACAATTGGA+TGG | - | chr1.4:34689187-34689206 | MS.gene41267:CDS | 30.0% |
! | CTTCTATAATTTGCATTTCC+AGG | - | chr1.4:34689989-34690008 | MS.gene41267:intron | 30.0% |
! | GAGCTTCTCATTTAGAATTT+CGG | + | chr1.4:34690944-34690963 | None:intergenic | 30.0% |
! | GTTTTGTAGTTTCAACAAGT+AGG | - | chr1.4:34689826-34689845 | MS.gene41267:intron | 30.0% |
! | TCATTTTCAGCATCAATTTG+AGG | - | chr1.4:34689281-34689300 | MS.gene41267:intron | 30.0% |
!! | GCTCTTATCAATAATGGATA+AGG | - | chr1.4:34690960-34690979 | MS.gene41267:CDS | 30.0% |
!! | TTCTGAGATCTTGATATGTT+TGG | - | chr1.4:34689908-34689927 | MS.gene41267:intron | 30.0% |
AATAACCCATAAACAGCTTC+AGG | - | chr1.4:34689224-34689243 | MS.gene41267:CDS | 35.0% | |
ATAACCCATAAACAGCTTCA+GGG | - | chr1.4:34689225-34689244 | MS.gene41267:CDS | 35.0% | |
CATAATATATGCAAGGTCTG+GGG | - | chr1.4:34690785-34690804 | MS.gene41267:CDS | 35.0% | |
CATATCAAGATCTCAGAAAG+TGG | + | chr1.4:34689906-34689925 | None:intergenic | 35.0% | |
CCAATTGTTGAAAACATAGG+AGG | + | chr1.4:34689186-34689205 | None:intergenic | 35.0% | |
GCATAATATATGCAAGGTCT+GGG | - | chr1.4:34690784-34690803 | MS.gene41267:CDS | 35.0% | |
TCTTCCTGTTTCAGATCAAA+TGG | - | chr1.4:34689437-34689456 | MS.gene41267:intron | 35.0% | |
TGCATAATATATGCAAGGTC+TGG | - | chr1.4:34690783-34690802 | MS.gene41267:CDS | 35.0% | |
! | AGTACCATTTGATCTGAAAC+AGG | + | chr1.4:34689444-34689463 | None:intergenic | 35.0% |
! | CCTCCTATGTTTTCAACAAT+TGG | - | chr1.4:34689183-34689202 | MS.gene41267:CDS | 35.0% |
! | CTTGAAAACCTTGTGTTTTG+AGG | - | chr1.4:34689508-34689527 | MS.gene41267:intron | 35.0% |
! | TGAAGCTGTTTATGGGTTAT+TGG | + | chr1.4:34689225-34689244 | None:intergenic | 35.0% |
!!! | AGGACTTTTGAAATTGTTCC+CGG | + | chr1.4:34689666-34689685 | None:intergenic | 35.0% |
!!! | GGTTTTTTTTTTGTAGTGGC+CGG | + | chr1.4:34690819-34690838 | None:intergenic | 35.0% |
!!! | GTTTTTTTTTTGTAGTGGCC+GGG | + | chr1.4:34690818-34690837 | None:intergenic | 35.0% |
!!! | TTTTTTTTTTGTAGTGGCCG+GGG | + | chr1.4:34690817-34690836 | None:intergenic | 35.0% |
ACCATACTCCTCAAAACACA+AGG | + | chr1.4:34689519-34689538 | None:intergenic | 40.0% | |
ACTTTCTCCACAAGTAGATG+AGG | - | chr1.4:34689755-34689774 | MS.gene41267:intron | 40.0% | |
ATGATCACCTCATCTACTTG+TGG | + | chr1.4:34689765-34689784 | None:intergenic | 40.0% | |
CAGAAGAAATTGAGCATTCC+GGG | - | chr1.4:34689645-34689664 | MS.gene41267:intron | 40.0% | |
CGAGGGACTAATTAAGAGAA+AGG | - | chr1.4:34689716-34689735 | MS.gene41267:intron | 40.0% | |
CTACCTGCAAAAAACCCAAA+AGG | + | chr1.4:34690900-34690919 | None:intergenic | 40.0% | |
GAATTACAGAAGCAAGTCGA+GGG | - | chr1.4:34689699-34689718 | MS.gene41267:intron | 40.0% | |
GCAGAAGAAATTGAGCATTC+CGG | - | chr1.4:34689644-34689663 | MS.gene41267:intron | 40.0% | |
GTTTCTTCATCTCAGACCTT+TGG | - | chr1.4:34689957-34689976 | MS.gene41267:intron | 40.0% | |
TCTCAGAAAGTGGAATCTTG+TGG | + | chr1.4:34689896-34689915 | None:intergenic | 40.0% | |
! | GAAAAAGGGCGTACACAATT+AGG | + | chr1.4:34689550-34689569 | None:intergenic | 40.0% |
! | TGAGCTTATCTCAGTTGGTA+TGG | - | chr1.4:34690756-34690775 | MS.gene41267:CDS | 40.0% |
!! | ATGGGTTATTGGCTCTTCAA+AGG | + | chr1.4:34689214-34689233 | None:intergenic | 40.0% |
!! | TGGGTTATTGGCTCTTCAAA+GGG | + | chr1.4:34689213-34689232 | None:intergenic | 40.0% |
!!! | ACCTTGTGTTTTGAGGAGTA+TGG | - | chr1.4:34689515-34689534 | MS.gene41267:intron | 40.0% |
!!! | GTTCCTTTTGGGTTTTTTGC+AGG | - | chr1.4:34690894-34690913 | MS.gene41267:CDS | 40.0% |
AGGAAGAAGTGAACGAAGTG+AGG | + | chr1.4:34689424-34689443 | None:intergenic | 45.0% | |
AGTGACCCTGAAGCTGTTTA+TGG | + | chr1.4:34689233-34689252 | None:intergenic | 45.0% | |
ATAGAAGACTCTCCCTCCAA+AGG | + | chr1.4:34689976-34689995 | None:intergenic | 45.0% | |
CTTCATCTCAGACCTTTGGA+GGG | - | chr1.4:34689961-34689980 | MS.gene41267:intron | 45.0% | |
GGAATTACAGAAGCAAGTCG+AGG | - | chr1.4:34689698-34689717 | MS.gene41267:intron | 45.0% | |
GTGACCCTGAAGCTGTTTAT+GGG | + | chr1.4:34689232-34689251 | None:intergenic | 45.0% | |
TCTTCATCTCAGACCTTTGG+AGG | - | chr1.4:34689960-34689979 | MS.gene41267:intron | 45.0% | |
! | TCACTGCTTGTGGACTGTAA+GGG | + | chr1.4:34689327-34689346 | None:intergenic | 45.0% |
!!! | TTTTTTTAAAGAAAAAATAT+TGG | - | chr1.4:34690627-34690646 | MS.gene41267:intron | 5.0% |
AGTACTCCTCATCTCTCCCT+TGG | + | chr1.4:34690709-34690728 | None:intergenic | 50.0% | |
CAAGCTTCTTGACCATGCCA+AGG | + | chr1.4:34689350-34689369 | None:intergenic | 50.0% | |
CCAACTGAGATAAGCTCACG+AGG | + | chr1.4:34690754-34690773 | None:intergenic | 50.0% | |
CCTCGTGAGCTTATCTCAGT+TGG | - | chr1.4:34690751-34690770 | MS.gene41267:CDS | 50.0% | |
! | GTCACTGCTTGTGGACTGTA+AGG | + | chr1.4:34689328-34689347 | None:intergenic | 50.0% |
CACAAGCAGTGACCTTGGCA+TGG | - | chr1.4:34689335-34689354 | MS.gene41267:intron | 55.0% | |
CAGTCCACAAGCAGTGACCT+TGG | - | chr1.4:34689330-34689349 | MS.gene41267:intron | 55.0% | |
CATGCCAAGGTCACTGCTTG+TGG | + | chr1.4:34689337-34689356 | None:intergenic | 55.0% | |
GTCAGTCCAAGGGAGAGATG+AGG | - | chr1.4:34690700-34690719 | MS.gene41267:intron | 55.0% | |
! | AAGGTCTGGGGTTCAAACCC+CGG | - | chr1.4:34690797-34690816 | MS.gene41267:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 34689168 | 34691011 | 34689168 | ID=MS.gene41267 |
chr1.4 | mRNA | 34689168 | 34691011 | 34689168 | ID=MS.gene41267.t1;Parent=MS.gene41267 |
chr1.4 | exon | 34690721 | 34691011 | 34690721 | ID=MS.gene41267.t1.exon1;Parent=MS.gene41267.t1 |
chr1.4 | CDS | 34690721 | 34691011 | 34690721 | ID=cds.MS.gene41267.t1;Parent=MS.gene41267.t1 |
chr1.4 | exon | 34690169 | 34690531 | 34690169 | ID=MS.gene41267.t1.exon2;Parent=MS.gene41267.t1 |
chr1.4 | CDS | 34690169 | 34690531 | 34690169 | ID=cds.MS.gene41267.t1;Parent=MS.gene41267.t1 |
chr1.4 | exon | 34689168 | 34689263 | 34689168 | ID=MS.gene41267.t1.exon3;Parent=MS.gene41267.t1 |
chr1.4 | CDS | 34689168 | 34689263 | 34689168 | ID=cds.MS.gene41267.t1;Parent=MS.gene41267.t1 |
Gene Sequence |
Protein sequence |