AlfalfaGEDB | MS.gene41362

M. sativa cultivar XinJiangDaYe / MS.gene41362

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF00319.21 PF17917.4

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41362.t1	GAU25035.1	47.2	502	49	2	1	286	767	1268	2.90E-105	392.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41362.t1	O64703	41.0	173	90	4	297	458	1	172	1.5e-25	119.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41362.t1	A0A2Z6MND4	47.2	502	49	2	1	286	767	1268	2.1e-105	392.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene41362.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41362.t1	MTR_1g047550	91.463	164	14	0	297	460	1	164	3.78e-103	311
MS.gene41362.t1	MTR_8g079502	83.537	164	27	0	297	460	1	164	8.81e-93	284
MS.gene41362.t1	MTR_4g131030	70.899	189	38	1	297	468	1	189	1.63e-83	261
MS.gene41362.t1	MTR_1g063160	77.439	164	37	0	297	460	1	164	2.94e-83	259
MS.gene41362.t1	MTR_1g054265	74.390	164	42	0	297	460	1	164	3.56e-79	248
MS.gene41362.t1	MTR_8g051580	54.268	164	75	0	297	460	1	164	3.79e-58	194
MS.gene41362.t1	MTR_8g046350	54.268	164	69	2	297	460	1	158	4.78e-52	177
MS.gene41362.t1	MTR_4g094632	39.053	169	89	5	297	464	1	156	1.72e-28	112
MS.gene41362.t1	MTR_4g094638	39.766	171	91	5	297	464	1	162	2.34e-23	97.8
MS.gene41362.t1	MTR_3g052870	40.000	145	82	4	292	432	3	146	4.73e-22	95.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41362.t1	AT2G34440	41.860	172	90	4	297	458	1	172	2.69e-34	129
MS.gene41362.t1	AT3G66656	48.000	125	57	2	297	416	1	122	3.30e-29	114
MS.gene41362.t1	AT2G24840	40.800	125	66	2	297	417	62	182	3.20e-24	103
MS.gene41362.t1	AT5G60440	38.365	159	74	4	298	447	7	150	1.14e-21	96.3
MS.gene41362.t1	AT1G01530	37.857	140	83	2	297	436	6	141	1.93e-19	88.6
MS.gene41362.t1	AT4G09960	31.111	180	107	4	295	469	9	176	2.14e-18	85.5
MS.gene41362.t1	AT4G09960	31.285	179	106	4	296	469	1	167	2.63e-18	85.1
MS.gene41362.t1	AT4G09960	31.461	178	105	4	297	469	1	166	3.63e-18	84.7
MS.gene41362.t1	AT4G09960	31.461	178	105	4	297	469	27	192	6.05e-18	84.3
MS.gene41362.t1	AT3G57230	32.278	158	94	3	297	454	1	145	1.80e-17	80.1

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Find 158 sgRNAs with CRISPR-Local

Find 405 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGAGAACAACCAAGAG+GGG	0.681223	1.2:-30600087	None:intergenic
AAACTCTTGCCCAAATATTT+TGG	0.214976	1.2:+30596121	MS.gene41362:CDS
AAAGAGTAAGGTCTGTCACC+AGG	0.560507	1.2:-30597850	None:intergenic
AACAATGCCGAAAGAGGGAA+AGG	0.525861	1.2:-30599647	None:intergenic
AACATGTGCAAGAGGCGATG+CGG	0.651283	1.2:-30599442	None:intergenic
AATATTTGGGCAAGAGTTTG+TGG	0.437262	1.2:-30596117	None:intergenic
AATGTAACTTGCCTCGTGTT+GGG	0.491629	1.2:-30597742	None:intergenic
AATTCGTGATGGTGAAAAGC+AGG	0.545592	1.2:+30598011	MS.gene41362:CDS
AATTTGGGTGGATATTAGCA+TGG	0.557808	1.2:+30595811	MS.gene41362:CDS
ACAAACAGAGAACAACCAAG+AGG	0.604125	1.2:-30600089	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACCAAGACAATCATTAG+TGG	-	chr1.2:30596883-30596902	None:intergenic	30.0%
AAAACCACTAATGATTGTCT+TGG	+	chr1.2:30596876-30596895	MS.gene41362:intron	30.0%
AATCTTTCTCTCAATTACCA+CGG	+	chr1.2:30598487-30598506	MS.gene41362:intron	30.0%
ACTTAACCATTACTCAACTA+GGG	-	chr1.2:30597166-30597185	None:intergenic	30.0%
AGAAATTGATGCTTAATAGC+TGG	+	chr1.2:30598732-30598751	MS.gene41362:intron	30.0%
ATACAAAGAGCTTCAAGATT+GGG	+	chr1.2:30598107-30598126	MS.gene41362:CDS	30.0%
ATACTAACACAAATTCGTGA+TGG	+	chr1.2:30598000-30598019	MS.gene41362:CDS	30.0%
ATCGGTCTTAATGATAAATG+GGG	-	chr1.2:30595224-30595243	None:intergenic	30.0%
ATTTATGCTGTCCAAAATTG+GGG	+	chr1.2:30595181-30595200	MS.gene41362:CDS	30.0%
CATTTATGCTGTCCAAAATT+GGG	+	chr1.2:30595180-30595199	MS.gene41362:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	30595088	30600124	30595088	ID=MS.gene41362
chr1.2	mRNA	30595088	30600124	30595088	ID=MS.gene41362.t1;Parent=MS.gene41362
chr1.2	exon	30595088	30595514	30595088	ID=MS.gene41362.t1.exon1;Parent=MS.gene41362.t1
chr1.2	CDS	30595088	30595514	30595088	ID=cds.MS.gene41362.t1;Parent=MS.gene41362.t1
chr1.2	exon	30595771	30596204	30595771	ID=MS.gene41362.t1.exon2;Parent=MS.gene41362.t1
chr1.2	CDS	30595771	30596204	30595771	ID=cds.MS.gene41362.t1;Parent=MS.gene41362.t1
chr1.2	exon	30597676	30598194	30597676	ID=MS.gene41362.t1.exon3;Parent=MS.gene41362.t1
chr1.2	CDS	30597676	30598194	30597676	ID=cds.MS.gene41362.t1;Parent=MS.gene41362.t1
chr1.2	exon	30599409	30599502	30599409	ID=MS.gene41362.t1.exon4;Parent=MS.gene41362.t1
chr1.2	CDS	30599409	30599502	30599409	ID=cds.MS.gene41362.t1;Parent=MS.gene41362.t1
chr1.2	exon	30599594	30599792	30599594	ID=MS.gene41362.t1.exon5;Parent=MS.gene41362.t1
chr1.2	CDS	30599594	30599792	30599594	ID=cds.MS.gene41362.t1;Parent=MS.gene41362.t1
chr1.2	exon	30599878	30600124	30599878	ID=MS.gene41362.t1.exon6;Parent=MS.gene41362.t1
chr1.2	CDS	30599878	30600124	30599878	ID=cds.MS.gene41362.t1;Parent=MS.gene41362.t1

Gene Sequence

>MS.gene41362

ATGCGAGAAAGGCATCCCATTGCTTATATTAGCAAATCCTTGGGTCCTAAACATGAAGCAATGTCTGTGTATGAAATGGAACTTCTTGCTATCATTTATGCTGTCCAAAATTGGGGTGCATATTTGTCTCATGCCCCATTTATCATTAAGACCGATCAACAGAGTATCAAACACATTCTTGACCAGAAGTTTAACACTCCCTTCCAACAAGCTTGGGTATCTAAACTTTTGGGTTTTGAGTTTGAGATACAATATAATGAAGGATCGACTAATACGGCTGCTGATGCGTTATCAAGGAAAACTGGGGAGGAACTTTTGTCTCTCCTACTTGATAATGTTCAGACTGATTTATTACACCATATCAGGAAATCTTGGTCCTCTGATCCTGCCATGTCTCAATTAATTTCAAGCCTACAAGCTAAGCCAGGTACTCACCCTAAGTTTTCATGGATAAATGGAGAACTCTGACGACGAGGAAAGCTGGTCATTGGTAATGTTTCTACTCTCAAAGATACGATTCTCCAATATAATGGCTTCACAATTCTGCTTAGGGGGTCATTCAGGCAGGGACATCACTATAGTGAGAGTTCAGTCTCTTTTCTTTTGGAAGGGAATGCGGAAGGATATTCAAACATTTATCTAAAATTGCAGTACATGTCAAACGTGTAAATCTGATTATGCAGCTTCTCTAGGATTGTTACAACCATCGCCGATCCCGTCACAAATTTGGGTGGATATTAGCATGGATTTTATTGAAGGATTGCCTCAATACACAGGTAAACAAACTATCTTTGTTTTTGTCGATCGACTAAGAAAATATGCTCATTTCATACCTTTGAGACACCCGCATACAACTTTGGATGCCCAAGAAGATGTCGTCAAACTCATGAAATTTCACCATATGCGTGCTCAAAACCACATGAAACAACAGGCAGATCATCGAAGCAGTGACATAATATTTGATATTGGAGACTTAGTATTTCTCAAACTGCAACCTTATCGTCAATCTTCTGCCCATCGTGCTGCATACCACAAACTCTTGCCCAAATATTTTGGTCCCTTCAAAATATTGGACAAAGTGGGAAAAGTTGCTTATCAATTAGAATTACCTCAGCAGGTTGCTATTCATAATGTATTTCACGTCTATCAATTGAAAAAAATGCCACAACCCTTCTTCCACTATGTTTCATCCAATCCCTGCTTCCTGGCCTACTGCTGTTGCACAACGATACCTTAAGGCTATCTTAGATTGTAAAATGGTCAAGAGAGGTCGTGTTGCAGCGACTAAAGTGCTCGTGCAAGGGTTGTGTTAACCGGTGCCCCTGTGGCACTGGTTAAGGTATCTAAAAAAGGAAAAATTAAATTGAAAAAGATACTTTTTTTGACTTTTGAAACATTGATTACACAATTTTCAATGCAAAAGCTTCTATTTTTGCATCCTTAACCAGTGCCCCGGGGGCACCGGTTAACATTTCCCTTTGTTGTTTTATAGCTAGAAGGTTCTAGTTGTATGAGTTGTCATTTTAGCTTTGGATTCATTGTACTAGGTAACAAATAGTGAATTCTATGCTCACATATTATGTACTCCCTCCGGTCCTATTTATAAGAAAATTTTCAAAAAAAACTTTGGTCCTATATATAAGAAAAAGTCACAACTTTAAAGTACATTTATTGCTTAAAAGACTTTTCTAACCCTCATTTAATGTTTGTCTTTTTAATATTAGTGGATATAATTAATACTTCACAAATTTTTATGAGGGCATATTTGTAAAAGCATTCAAAAAAATTAAAACCACTAATGATTGTCTTGGTTTTGATGATTTTTGGTTTCTTTTCTTATAAAAAGGACCGGAGAGAGTATTTAAACACTCTGTCGACAATGGAATAAACAGACAATTAATGCAAATTGTTATGATCCAAAATATCACATGGGACATGTGTCACTTGATCCAATAATTAAGGGAATAAAACTAACAAGAAAATATTCTCTTAACCTTCTATAAAAGGGAACCAATGATGGGAAGCAAAGGCATGAAGAATATTGATGAAAGTCTCTCCTCTTTCCCTTTGGTACTCCCTAGTTGAGTAATGGTTAAGTCTTAGACTTAATCTTCTTCTATCTTTTCTTTGATGTTTCTATGTACCAAGAACATCAATTTTAATTGAGTTCTAATCTATCAATTTTACCTTTTATTTCACAATCAATTCACAATTATCATTTTATTTCATTATCAATTTTAGGAACCATTACACAAATCAAACAAATTCTCCTCTCCTTACTCTCAATATCACTGTTATCATTTAACTACTTACCCAACGAGCTTCATTCATTCATTCATTGTTGCTCCTGGAAGTAGAAAGGAATTAACGGATCCTAATCCCTAATAACCAAATCCCTGTTACAAGAAATAAAATATTTCTATGTTAGTGATAATAATGTCCATTATTGAAAAATGAGTTGTTTTAAAATCAATATTAGAAACAACGAACCTTTTTCTAGAATGTACACATAAATAGGGGAGTAAAATATACACACAACATTGATAATCAATCTTTGTGTTCTAAACTTGCCTTCTTTTTTTTAGTAGGTGTTGTGTGAAGCAGGTGAAGGAATCATGGGTCGTCGTAAAATTAAGATTGAGATCGTGAAAGATCCCAACACGAGGCAAGTTACATTCTCAAAGCGTCGAACGGGCTTATTCAAGAAAGCATATGAATTGTCCATTTTGTGCAGAGCAGAAGTCGTTATTGTTGTGTTCTCTCCTGGTGACAGACCTTACTCTTTTGGCCATCCAGGTGTTGACGTTGTTGCAGCCAAGTATCTCCAACAAGAGACTGATGCAAGCGATTCCCAAGGAAACCCATCTTCTAATGCTCCCAAGATGGAAAAATTAAATCTAGAACTTGCTGAGATACTAACACAAATTCGTGATGGTGAAAAGCAGGCCAAGACTCATGATGAGATTCTGAAGCAAAATGATGTGTCAAAACTCTCTGAGCTTAAAGAATTAAGAGATTCATACAAAGAGCTTCAAGATTGGGTCAAATTATGTCTTAGTGATATTGAAATATCAGAATATATGATGCTTCTTGCTCAGGAACCAATGGTGGGAATAAAAGCGAAATCTGCAAATAGGAAAAGAAGAAGAAATTCTCAGGTGGATAGGTGTTTATGCCGTTATGCCTAGCGACACACCAAGTCATTTTAATCAGTTTAGTTTTCTTGGTGGTGTTGCCAAATCAAAACAATTCATTTTACAGGCTATTTGGTTTGCAACTGCTTGGGAAATTTGGAAGGAAAGAAATAACAGGGTATTCAATGTGAAATTTTGCTCCATTCATCAGGTAGTAGACAAGATTAAGTCGACAACTTTCATGTGGTTGAAAGGAACATACATCAATCTTTCTCTCAATTACCACGGTTGGTGGCTTAGTCCGTTTACTATTCTCGGCATAGGTTAATTGTTTGTTTCTTTGTTGTTTTTTCCGCCATTGCGGATTGGCTTTGCCTTGTAATTATATCTGTGATACTGTTTGAACTATGGTGTTTCTTCCTTAGCACACCTTGTGCTGGGAAGGCCATTTTGAGGTGGTAATATAATTTCATTTTAGCCTCTTCAAAAAAAAAAAAAAGGAAAAGAAGAAGAAATTGATGCTTAATAGCTGGAAAGCTATTTTAATTTAATTTATTTTCTACTTTTTTATGAATAGTTTATGTTCTCATGTCTCTCTAAGCCTTGTTGTACACATCCAACAACGTTTAAGAGAGACATGGAAGAAAATAGTACTAATAGTGAATAAAGTGTTTGCTTTTGCCATTCATATTTTTATTAGTAGAAATGAATTTAAACTTGACGTCTAATTATTGATTTGTAATAAGTTGTGTCGAATAATTAAATATGGGATAAAATCTTAATTTAAATATAGAAAAAACAAGTCGTGGAACATATTTTTGTGTAAAAGTGGAATGTCAATTTGTATGAAAATCATCGGATTTGTTATTCGTCATTGGCACTTCCCTCTTGCTCTCTCTTATCACTTATTTCATTGCTTGTTTTTTATCGGTTGATTTTAATTTGGTAGATTTTTTTATTGTAGATTCTCGACTAGTGTATCCTTTCAGTTTTAAAATATTTTTTTTATCAAAAAATATACATTTTTATTGCAGATATCTTTTAGAAATAAAATAATATTAATCAATGTTAAAATAATTTTTTTTGCAAATTAAAACAACGCCGCTCTCTGACTTCTCTCTAAGTTTCGTCGCGCCGCCGGTTCTTTGAATCCAAAACGTTGCTGTTCAGATGTAGACGGTGGTTAGCGGTGGTGCGACGATGGGTCAATCTACAACCATCCGCATCGCCTCTTGCACATGTTCTCTGCGGCGGTGATTCGTCGGAAGACCAGGTTTCAAGGTGTGTCTTGTTTCGGTCCGGTGGTTATGCCGACGATTTTGGTTTTGTTCAGATTTTGAGGTTTTGTCATTCGTTTTTGCGATGATGCTAGATTTTGAGTCTCGGTTTTCACTATATCGTCACTTTTGTCCTCCGACGGCCTGTCCTTTCCCTCTTTCGGCATTGTTTCTCGTCGAATTCAGACTGGTTGCGGTCTTGTTGTTTCTGGTATGGTGGTTATGGTACGGTGGTGGTGAGAAGGTGATAACATGTGGTGTTTTGGGTGTTTATGTGGTGGTGATGGGGTGGTGGTGATTATCGTTGTTTGAGTGGTGATGGGGTGGTGGTTCTGTGGTGGCGAGGAGATGGGGACGTTTGGTATTTGATTGGTTTTAGTGAGGCTGCCTATGTAGCTGCGGCGGGTTGTAGTGGTGGTTCACTAGTGTTTTTCATGGGGGTTTGTCGTGGATGCAGTGGTGTGGGTTGGACGGTGTCGTGGTGGAATTTTGGTTTCGGATCTAGCGCTAGATCTTTTGGTGGTTTTGTTGCACTGGGGTTGATTTTATGTTTGGATGTTAGAGGGTGGATGATCTTTGAATCGGAATCCCCTCTTGGTTGTTCTCTGTTTGTCCGCGGTTTTTGA

Protein sequence

>MS.gene41362.t1

MRERHPIAYISKSLGPKHEAMSVYEMELLAIIYAVQNWGAYLSHAPFIIKTDQQSIKHILDQKFNTPFQQAWVSKLLGFEFEIQYNEGSTNTAADALSRKTGEELLSLLLDNVQTDLLHHIRKSWSSDPAMSQLISSLQAKPASLGLLQPSPIPSQIWVDISMDFIEGLPQYTGKQTIFVFVDRLRKYAHFIPLRHPHTTLDAQEDVVKLMKFHHMRAQNHMKQQADHRSSDIIFDIGDLVFLKLQPYRQSSAHRAAYHKLLPKYFGPFKILDKVGKVAYQLELPQQVLCEAGEGIMGRRKIKIEIVKDPNTRQVTFSKRRTGLFKKAYELSILCRAEVVIVVFSPGDRPYSFGHPGVDVVAAKYLQQETDASDSQGNPSSNAPKMEKLNLELAEILTQIRDGEKQAKTHDEILKQNDVSKLSELKELRDSYKELQDWVKLCLSDIEISEYMMLLAQEPMRWCDDGSIYNHPHRLLHMFSAAVIRRKTRFQDFESRFSLYRHFCPPTACPFPLSALFLVEFRLVAVLLFLVWWLWYGGGEKVITCGVLGVYVVVMGWCEAAYVAAAGCSGGSLVFFMGVCRGCSGVGWTVSWWNFGFGSSARSFGGFVALGLILCLDVRGWMIFESESPLGCSLFVRGF