AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41379

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41379.t1 MTR_1g101810 96.450 338 10 2 1 337 1 337 0.0 659
MS.gene41379.t1 MTR_1g101810 96.450 338 10 2 1 337 31 367 0.0 657
MS.gene41379.t1 MTR_8g033070 50.357 280 104 11 62 329 76 332 1.04e-71 226
MS.gene41379.t1 MTR_2g006150 58.475 118 45 1 40 153 101 218 1.14e-37 140
MS.gene41379.t1 MTR_2g006150 58.475 118 45 1 40 153 101 218 1.15e-37 140
MS.gene41379.t1 MTR_7g028160 71.765 85 24 0 58 142 43 127 1.70e-36 133
MS.gene41379.t1 MTR_4g108370 54.264 129 48 3 15 132 36 164 4.51e-34 130
MS.gene41379.t1 MTR_5g039600 67.059 85 28 0 62 146 64 148 3.48e-33 127
MS.gene41379.t1 MTR_1g063870 82.090 67 12 0 61 127 45 111 7.14e-33 121
MS.gene41379.t1 MTR_1g038650 71.053 76 22 0 52 127 19 94 1.52e-31 119
MS.gene41379.t1 MTR_1g114380 68.750 80 25 0 58 137 26 105 3.59e-31 118
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41379.t1 AT5G51910 47.305 334 110 11 1 323 1 279 3.36e-75 234
MS.gene41379.t1 AT5G51910 47.305 334 110 11 1 323 1 279 3.36e-75 234
MS.gene41379.t1 AT2G45680 50.000 284 121 8 62 328 72 351 1.36e-67 216
MS.gene41379.t1 AT1G58100 71.264 87 18 2 62 141 57 143 2.30e-34 130
MS.gene41379.t1 AT3G27010 59.322 118 33 4 11 126 35 139 1.15e-33 126
MS.gene41379.t1 AT3G27010 59.322 118 33 4 11 126 35 139 1.15e-33 126
MS.gene41379.t1 AT1G69690 81.818 66 12 0 62 127 49 114 1.44e-33 126
MS.gene41379.t1 AT1G72010 69.620 79 24 0 59 137 57 135 3.38e-33 126
MS.gene41379.t1 AT3G47620 63.918 97 20 2 37 127 92 179 1.01e-32 127
MS.gene41379.t1 AT1G35560 68.966 87 20 2 62 141 52 138 4.48e-32 123
MS.gene41379.t1 AT5G23280 65.909 88 27 1 40 127 17 101 1.25e-31 119
MS.gene41379.t1 AT5G08330 78.261 69 15 0 59 127 25 93 3.58e-31 118
MS.gene41379.t1 AT5G41030 60.256 78 31 0 53 130 56 133 7.31e-28 109
MS.gene41379.t1 AT2G37000 76.667 60 14 0 65 124 43 102 1.24e-25 102
MS.gene41379.t1 AT3G45150 60.317 63 25 0 61 123 13 75 1.38e-21 90.5
MS.gene41379.t1 AT1G58100 86.111 36 5 0 62 97 57 92 9.11e-15 75.1

Find 100 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTCATTAAACTTGAATT+TGG 0.121922 1.4:-78974696 None:intergenic
TAAGAAAGAGTTGCAGTTTA+TGG 0.151782 1.4:+78974971 MS.gene41379:CDS
GGGTTGTTCTTCTGCAAATT+TGG 0.196594 1.4:+78974992 MS.gene41379:CDS
CCGTATGCTGTTTGAGCAAT+TGG 0.236628 1.4:-78974558 None:intergenic
TTTGAACCGGCATCGGAATA+AGG 0.270424 1.4:-78974164 None:intergenic
GATCAAGTTTCAATGTGTTC+TGG 0.294475 1.4:+78974528 MS.gene41379:CDS
TAATGAATCAGCCACAGTTT+TGG 0.305680 1.4:+78974709 MS.gene41379:CDS
CCTCGTCAGTTGAAAGATTC+TGG 0.326356 1.4:-78974283 None:intergenic
CGTATGCTGTTTGAGCAATT+GGG 0.328215 1.4:-78974557 None:intergenic
CAACTTAAACTTCAATTTGA+AGG 0.336529 1.4:-78975035 None:intergenic
AAGAAAGAGTTGCAGTTTAT+GGG 0.351004 1.4:+78974972 MS.gene41379:CDS
GGTGGTGGTAGTGGTGAAAA+TGG 0.355388 1.4:+78974597 MS.gene41379:CDS
AGGGACGTGGTCGGAGAATC+AGG 0.360591 1.4:+78974241 MS.gene41379:CDS
GATTCATTAAACTTGAATTT+GGG 0.361250 1.4:-78974695 None:intergenic
AAAACATCATCGCCGCCGTT+AGG 0.366433 1.4:-78974036 None:intergenic
GCAGAAACAAAATCAGAAAT+AGG 0.368459 1.4:-78974771 None:intergenic
TTCCAATGCTTCATCTACTT+TGG 0.393966 1.4:+78974842 MS.gene41379:CDS
GTGGTGGTTTAGTTCCATTA+TGG 0.415083 1.4:+78974619 MS.gene41379:CDS
TTACTTACAACAGGCCATAA+TGG 0.429653 1.4:-78974633 None:intergenic
GACAACGGAGCCTGCGGCTG+CGG 0.434289 1.4:+78974104 MS.gene41379:CDS
TGGTCGGAGAATCAGGATTC+CGG 0.442503 1.4:+78974248 MS.gene41379:CDS
ATTCTGGCGGCGCATGTCGC+CGG 0.450483 1.4:-78974267 None:intergenic
AAACATCATCGCCGCCGTTA+GGG 0.450955 1.4:-78974035 None:intergenic
ACCTCCGGTGGTGGTGGTAG+TGG 0.461112 1.4:+78974588 MS.gene41379:CDS
GCCACTGTCATCGTTTGAAC+CGG 0.470202 1.4:-78974177 None:intergenic
ATCATCGAAGCTACCGGCAC+TGG 0.470702 1.4:+78974369 MS.gene41379:CDS
GCCACCACCTCCGGTGGTGG+TGG 0.474522 1.4:+78974582 MS.gene41379:CDS
AACATCATCTCCGGCGAGAC+CGG 0.479647 1.4:+78974440 MS.gene41379:CDS
CTACAAATACTCAGATGCTA+AGG 0.482853 1.4:+78974925 MS.gene41379:CDS
GGTGCCACCACCTCCGGTGG+TGG 0.483512 1.4:+78974579 MS.gene41379:CDS
CTGTTGTAAGTAACGGTGTT+GGG 0.497781 1.4:+78974643 MS.gene41379:CDS
CCAACACCGTTACTTACAAC+AGG 0.501497 1.4:-78974642 None:intergenic
GCATACGGTGCCACCACCTC+CGG 0.506126 1.4:+78974573 MS.gene41379:CDS
GGTGTTGGGTCTAATACAAC+AGG 0.506356 1.4:+78974657 MS.gene41379:CDS
ACCGGACGGTGAAGATGCTC+CGG 0.509905 1.4:+78974458 MS.gene41379:CDS
GGTAGTGGTGAAAATGGTGG+TGG 0.510528 1.4:+78974603 MS.gene41379:CDS
GAAAGAAGAGCTAACGGAAA+CGG 0.511043 1.4:+78974131 MS.gene41379:CDS
TTCACCACTACCACCACCAC+CGG 0.511362 1.4:-78974592 None:intergenic
TTTCAACTGACGAGGGAGCT+AGG 0.517084 1.4:+78974291 MS.gene41379:CDS
GTCCCTCCACCTTCGTGTGA+CGG 0.518085 1.4:-78974224 None:intergenic
ACCGGAGCATCTTCACCGTC+CGG 0.521868 1.4:-78974459 None:intergenic
TCTTTCATTACCGCAGCCGC+AGG 0.522108 1.4:-78974114 None:intergenic
CCGGTAGCTTCGATGATAGA+AGG 0.522884 1.4:-78974363 None:intergenic
CAATTTGAAGGATTTGAAGA+GGG 0.523447 1.4:-78975023 None:intergenic
CCAATTGCTCAAACAGCATA+CGG 0.523616 1.4:+78974558 MS.gene41379:CDS
AGCCAAAGTAGATGAAGCAT+TGG 0.524527 1.4:-78974844 None:intergenic
ACCACCACCACCGGAGGTGG+TGG 0.527488 1.4:-78974583 None:intergenic
GGTGGTAGTGGTGAAAATGG+TGG 0.530669 1.4:+78974600 MS.gene41379:CDS
CAGCTTGTTCTAGTAACCAC+CGG 0.530941 1.4:-78974338 None:intergenic
CCTTCTATCATCGAAGCTAC+CGG 0.531231 1.4:+78974363 MS.gene41379:CDS
GTCATCGTTTGAACCGGCAT+CGG 0.531689 1.4:-78974171 None:intergenic
CAACAGCCTTATTCCGATGC+CGG 0.533446 1.4:+78974158 MS.gene41379:CDS
GGCCGGCACAGTTCCAGTGC+CGG 0.539294 1.4:-78974382 None:intergenic
TAAGCAGTAGAAGCATTTGA+AGG 0.540001 1.4:-78974813 None:intergenic
CACACGAAGGTGGAGGGACG+TGG 0.552204 1.4:+78974228 MS.gene41379:CDS
GAAGATTCCAACATCATCTC+CGG 0.553576 1.4:+78974431 MS.gene41379:CDS
AGTATCTCCGTCGGAGACAA+CGG 0.553999 1.4:+78974089 MS.gene41379:CDS
ACTACCACCACCACCGGAGG+TGG 0.554618 1.4:-78974586 None:intergenic
TCAATTTGAAGGATTTGAAG+AGG 0.556225 1.4:-78975024 None:intergenic
AGACCGTCACACGAAGGTGG+AGG 0.559373 1.4:+78974221 MS.gene41379:CDS
CCGGCCATCGCTGTTTCCGT+CGG 0.560469 1.4:+78974399 MS.gene41379:CDS
GAAGCATTTGAAGGTTCTTG+TGG 0.561789 1.4:-78974804 None:intergenic
GCCATCGCTGTTTCCGTCGG+AGG 0.562359 1.4:+78974402 MS.gene41379:CDS
CCACCGGATTGTTTCTCCGT+CGG 0.564902 1.4:-78974322 None:intergenic
CCGACGGAAACAGCGATGGC+CGG 0.568312 1.4:-78974399 None:intergenic
CCAGAATCTTTCAACTGACG+AGG 0.568890 1.4:+78974283 MS.gene41379:CDS
CCTGTTGTAAGTAACGGTGT+TGG 0.571104 1.4:+78974642 MS.gene41379:CDS
TCAAACGATGACAGTGGCGG+CGG 0.571801 1.4:+78974182 MS.gene41379:CDS
TCTTCACCGTCCGGTCTCGC+CGG 0.573077 1.4:-78974450 None:intergenic
CATCTGAGTATTTGTAGCAG+AGG 0.582913 1.4:-78974919 None:intergenic
TACAAATACTCAGATGCTAA+GGG 0.585086 1.4:+78974926 MS.gene41379:CDS
GAAAGACCGTCACACGAAGG+TGG 0.585783 1.4:+78974218 MS.gene41379:CDS
GCAGGCTCCGTTGTCTCCGA+CGG 0.585882 1.4:-78974096 None:intergenic
GAAGTTACTGAACTCAAACT+AGG 0.588049 1.4:-78974867 None:intergenic
TACCGGCACTGGAACTGTGC+CGG 0.588215 1.4:+78974380 MS.gene41379:CDS
GTATGCTGTTTGAGCAATTG+GGG 0.588581 1.4:-78974556 None:intergenic
AATCCGACGGAGAAACAATC+CGG 0.589954 1.4:+78974319 MS.gene41379:CDS
TTATGGCCTGTTGTAAGTAA+CGG 0.597870 1.4:+78974636 MS.gene41379:CDS
GGTCTCGCCGGAGATGATGT+TGG 0.599874 1.4:-78974438 None:intergenic
TGACAGTGGCGGCGGCGAAG+AGG 0.607175 1.4:+78974190 MS.gene41379:CDS
GACCGTCACACGAAGGTGGA+GGG 0.613473 1.4:+78974222 MS.gene41379:CDS
ACCTCCGACGGAAACAGCGA+TGG 0.615156 1.4:-78974403 None:intergenic
CGAAGGTGGAGGGACGTGGT+CGG 0.617193 1.4:+78974232 MS.gene41379:CDS
TCATCTCCGGCGAGACCGGA+CGG 0.619808 1.4:+78974444 MS.gene41379:CDS
TACGGTGCCACCACCTCCGG+TGG 0.622609 1.4:+78974576 MS.gene41379:CDS
GTCGGAGACAACGGAGCCTG+CGG 0.638611 1.4:+78974098 MS.gene41379:CDS
CAATACTGAAGTATCTCCGT+CGG 0.638733 1.4:+78974080 MS.gene41379:CDS
AGGATGGAAGTGAACCCTAA+CGG 0.640403 1.4:+78974021 None:intergenic
CAGAATCTTTCAACTGACGA+GGG 0.645062 1.4:+78974284 MS.gene41379:CDS
GAGCTAGGTCACAAATCCGA+CGG 0.657749 1.4:+78974306 MS.gene41379:CDS
GGTAATGAAAGAAGAGCTAA+CGG 0.657843 1.4:+78974125 MS.gene41379:CDS
ACCACTACCACCACCACCGG+AGG 0.661408 1.4:-78974589 None:intergenic
AATCTTCAACGTACCTCCGA+CGG 0.665588 1.4:-78974415 None:intergenic
GGTTCAAACGATGACAGTGG+CGG 0.668294 1.4:+78974179 MS.gene41379:CDS
CGTCAGTTGAAAGATTCTGG+CGG 0.698563 1.4:-78974280 None:intergenic
ATCGAAAGACCGTCACACGA+AGG 0.699940 1.4:+78974215 MS.gene41379:CDS
GCCGGTTCAAACGATGACAG+TGG 0.712883 1.4:+78974176 MS.gene41379:CDS
GCAGGAATAGCCCAAAACTG+TGG 0.725268 1.4:-78974720 None:intergenic
CCGACGGAGAAACAATCCGG+TGG 0.744089 1.4:+78974322 MS.gene41379:CDS
ATGGAAGTGAACCCTAACGG+CGG 0.769753 1.4:+78974024 MS.gene41379:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GATTCATTAAACTTGAATTT+GGG - chr1.4:78974698-78974717 None:intergenic 20.0%
!! TGATTCATTAAACTTGAATT+TGG - chr1.4:78974699-78974718 None:intergenic 20.0%
! CTTGTTTGCACATTAAAAAA+TGG - chr1.4:78974750-78974769 None:intergenic 25.0%
AAGAAAGAGTTGCAGTTTAT+GGG + chr1.4:78974972-78974991 MS.gene41379:CDS 30.0%
CAATTTGAAGGATTTGAAGA+GGG - chr1.4:78975026-78975045 None:intergenic 30.0%
GAATTTGGGAACATGAAAAA+TGG - chr1.4:78974684-78974703 None:intergenic 30.0%
GCAGAAACAAAATCAGAAAT+AGG - chr1.4:78974774-78974793 None:intergenic 30.0%
TAAGAAAGAGTTGCAGTTTA+TGG + chr1.4:78974971-78974990 MS.gene41379:CDS 30.0%
TACAAATACTCAGATGCTAA+GGG + chr1.4:78974926-78974945 MS.gene41379:CDS 30.0%
TCAATTTGAAGGATTTGAAG+AGG - chr1.4:78975027-78975046 None:intergenic 30.0%
CTACAAATACTCAGATGCTA+AGG + chr1.4:78974925-78974944 MS.gene41379:CDS 35.0%
GAAGTTACTGAACTCAAACT+AGG - chr1.4:78974870-78974889 None:intergenic 35.0%
GATCAAGTTTCAATGTGTTC+TGG + chr1.4:78974528-78974547 MS.gene41379:CDS 35.0%
GGTAATGAAAGAAGAGCTAA+CGG + chr1.4:78974125-78974144 MS.gene41379:CDS 35.0%
TTACTTACAACAGGCCATAA+TGG - chr1.4:78974636-78974655 None:intergenic 35.0%
TTATGGCCTGTTGTAAGTAA+CGG + chr1.4:78974636-78974655 MS.gene41379:CDS 35.0%
TTCCAATGCTTCATCTACTT+TGG + chr1.4:78974842-78974861 MS.gene41379:CDS 35.0%
! AATGAATCAGCCACAGTTTT+GGG + chr1.4:78974710-78974729 MS.gene41379:CDS 35.0%
! GATGCTAAGGGATTTTTCAT+TGG + chr1.4:78974938-78974957 MS.gene41379:CDS 35.0%
! TAATGAATCAGCCACAGTTT+TGG + chr1.4:78974709-78974728 MS.gene41379:CDS 35.0%
!! ACATTAAAAAATGGTGCTGC+AGG - chr1.4:78974741-78974760 None:intergenic 35.0%
!! TAAGCAGTAGAAGCATTTGA+AGG - chr1.4:78974816-78974835 None:intergenic 35.0%
AGCCAAAGTAGATGAAGCAT+TGG - chr1.4:78974847-78974866 None:intergenic 40.0%
CAGAATCTTTCAACTGACGA+GGG + chr1.4:78974284-78974303 MS.gene41379:CDS 40.0%
CATCTGAGTATTTGTAGCAG+AGG - chr1.4:78974922-78974941 None:intergenic 40.0%
CCAATTGCTCAAACAGCATA+CGG + chr1.4:78974558-78974577 MS.gene41379:CDS 40.0%
CTGTTGTAAGTAACGGTGTT+GGG + chr1.4:78974643-78974662 MS.gene41379:CDS 40.0%
GAAAGAAGAGCTAACGGAAA+CGG + chr1.4:78974131-78974150 MS.gene41379:CDS 40.0%
GAAGATTCCAACATCATCTC+CGG + chr1.4:78974431-78974450 MS.gene41379:CDS 40.0%
GGGTTGTTCTTCTGCAAATT+TGG + chr1.4:78974992-78975011 MS.gene41379:CDS 40.0%
! CAATACTGAAGTATCTCCGT+CGG + chr1.4:78974080-78974099 MS.gene41379:CDS 40.0%
! CGTATGCTGTTTGAGCAATT+GGG - chr1.4:78974560-78974579 None:intergenic 40.0%
! GAAGCATTTGAAGGTTCTTG+TGG - chr1.4:78974807-78974826 None:intergenic 40.0%
! GCTCTTCTTCTTCTTTTCAC+CGG - chr1.4:78974480-78974499 None:intergenic 40.0%
! GTATGCTGTTTGAGCAATTG+GGG - chr1.4:78974559-78974578 None:intergenic 40.0%
! GTGGTGGTTTAGTTCCATTA+TGG + chr1.4:78974619-78974638 MS.gene41379:CDS 40.0%
AATCCGACGGAGAAACAATC+CGG + chr1.4:78974319-78974338 MS.gene41379:CDS 45.0%
AATCTTCAACGTACCTCCGA+CGG - chr1.4:78974418-78974437 None:intergenic 45.0%
CCAACACCGTTACTTACAAC+AGG - chr1.4:78974645-78974664 None:intergenic 45.0%
CCAGAATCTTTCAACTGACG+AGG + chr1.4:78974283-78974302 MS.gene41379:CDS 45.0%
CCTCGTCAGTTGAAAGATTC+TGG - chr1.4:78974286-78974305 None:intergenic 45.0%
CCTGTTGTAAGTAACGGTGT+TGG + chr1.4:78974642-78974661 MS.gene41379:CDS 45.0%
CCTTCTATCATCGAAGCTAC+CGG + chr1.4:78974363-78974382 MS.gene41379:CDS 45.0%
CGTCAGTTGAAAGATTCTGG+CGG - chr1.4:78974283-78974302 None:intergenic 45.0%
! CAGCTTGTTCTAGTAACCAC+CGG - chr1.4:78974341-78974360 None:intergenic 45.0%
! CCGTATGCTGTTTGAGCAAT+TGG - chr1.4:78974561-78974580 None:intergenic 45.0%
! GGTGTTGGGTCTAATACAAC+AGG + chr1.4:78974657-78974676 MS.gene41379:CDS 45.0%
! TTTGAACCGGCATCGGAATA+AGG - chr1.4:78974167-78974186 None:intergenic 45.0%
AAAACATCATCGCCGCCGTT+AGG - chr1.4:78974039-78974058 None:intergenic 50.0%
AAACATCATCGCCGCCGTTA+GGG - chr1.4:78974038-78974057 None:intergenic 50.0%
AGTATCTCCGTCGGAGACAA+CGG + chr1.4:78974089-78974108 MS.gene41379:CDS 50.0%
ATCGAAAGACCGTCACACGA+AGG + chr1.4:78974215-78974234 MS.gene41379:CDS 50.0%
ATGGAAGTGAACCCTAACGG+CGG + chr1.4:78974024-78974043 MS.gene41379:CDS 50.0%
CCGGTAGCTTCGATGATAGA+AGG - chr1.4:78974366-78974385 None:intergenic 50.0%
GAGCTAGGTCACAAATCCGA+CGG + chr1.4:78974306-78974325 MS.gene41379:CDS 50.0%
GCAGGAATAGCCCAAAACTG+TGG - chr1.4:78974723-78974742 None:intergenic 50.0%
GCCACTGTCATCGTTTGAAC+CGG - chr1.4:78974180-78974199 None:intergenic 50.0%
GGTTCAAACGATGACAGTGG+CGG + chr1.4:78974179-78974198 MS.gene41379:CDS 50.0%
GTCATCGTTTGAACCGGCAT+CGG - chr1.4:78974174-78974193 None:intergenic 50.0%
TGGTCGGAGAATCAGGATTC+CGG + chr1.4:78974248-78974267 MS.gene41379:CDS 50.0%
TTTCAACTGACGAGGGAGCT+AGG + chr1.4:78974291-78974310 MS.gene41379:CDS 50.0%
! GGTAGTGGTGAAAATGGTGG+TGG + chr1.4:78974603-78974622 MS.gene41379:CDS 50.0%
!! CAACAGCCTTATTCCGATGC+CGG + chr1.4:78974158-78974177 MS.gene41379:CDS 50.0%
!! GGTGGTAGTGGTGAAAATGG+TGG + chr1.4:78974600-78974619 MS.gene41379:CDS 50.0%
!! GGTGGTGGTAGTGGTGAAAA+TGG + chr1.4:78974597-78974616 MS.gene41379:CDS 50.0%
AACATCATCTCCGGCGAGAC+CGG + chr1.4:78974440-78974459 MS.gene41379:CDS 55.0%
ATCATCGAAGCTACCGGCAC+TGG + chr1.4:78974369-78974388 MS.gene41379:CDS 55.0%
GAAAGACCGTCACACGAAGG+TGG + chr1.4:78974218-78974237 MS.gene41379:CDS 55.0%
TCAAACGATGACAGTGGCGG+CGG + chr1.4:78974182-78974201 MS.gene41379:CDS 55.0%
TCTTTCATTACCGCAGCCGC+AGG - chr1.4:78974117-78974136 None:intergenic 55.0%
TTCACCACTACCACCACCAC+CGG - chr1.4:78974595-78974614 None:intergenic 55.0%
! CCACCGGATTGTTTCTCCGT+CGG - chr1.4:78974325-78974344 None:intergenic 55.0%
! GCCGGTTCAAACGATGACAG+TGG + chr1.4:78974176-78974195 MS.gene41379:CDS 55.0%
ACCGGACGGTGAAGATGCTC+CGG + chr1.4:78974458-78974477 MS.gene41379:CDS 60.0%
ACCTCCGACGGAAACAGCGA+TGG - chr1.4:78974406-78974425 None:intergenic 60.0%
AGACCGTCACACGAAGGTGG+AGG + chr1.4:78974221-78974240 MS.gene41379:CDS 60.0%
AGGGACGTGGTCGGAGAATC+AGG + chr1.4:78974241-78974260 MS.gene41379:CDS 60.0%
CCGACGGAGAAACAATCCGG+TGG + chr1.4:78974322-78974341 MS.gene41379:CDS 60.0%
GACCGTCACACGAAGGTGGA+GGG + chr1.4:78974222-78974241 MS.gene41379:CDS 60.0%
GGTCTCGCCGGAGATGATGT+TGG - chr1.4:78974441-78974460 None:intergenic 60.0%
GTCCCTCCACCTTCGTGTGA+CGG - chr1.4:78974227-78974246 None:intergenic 60.0%
! ACCGGAGCATCTTCACCGTC+CGG - chr1.4:78974462-78974481 None:intergenic 60.0%
! TACCGGCACTGGAACTGTGC+CGG + chr1.4:78974380-78974399 MS.gene41379:CDS 60.0%
ACCACTACCACCACCACCGG+AGG - chr1.4:78974592-78974611 None:intergenic 65.0%
ACTACCACCACCACCGGAGG+TGG - chr1.4:78974589-78974608 None:intergenic 65.0%
ATTCTGGCGGCGCATGTCGC+CGG - chr1.4:78974270-78974289 None:intergenic 65.0%
CACACGAAGGTGGAGGGACG+TGG + chr1.4:78974228-78974247 MS.gene41379:CDS 65.0%
CCGACGGAAACAGCGATGGC+CGG - chr1.4:78974402-78974421 None:intergenic 65.0%
CGAAGGTGGAGGGACGTGGT+CGG + chr1.4:78974232-78974251 MS.gene41379:CDS 65.0%
GCAGGCTCCGTTGTCTCCGA+CGG - chr1.4:78974099-78974118 None:intergenic 65.0%
GTCGGAGACAACGGAGCCTG+CGG + chr1.4:78974098-78974117 MS.gene41379:CDS 65.0%
TCATCTCCGGCGAGACCGGA+CGG + chr1.4:78974444-78974463 MS.gene41379:CDS 65.0%
TCTTCACCGTCCGGTCTCGC+CGG - chr1.4:78974453-78974472 None:intergenic 65.0%
! CCGGCCATCGCTGTTTCCGT+CGG + chr1.4:78974399-78974418 MS.gene41379:CDS 65.0%
! GCCATCGCTGTTTCCGTCGG+AGG + chr1.4:78974402-78974421 MS.gene41379:CDS 65.0%
!! ACCTCCGGTGGTGGTGGTAG+TGG + chr1.4:78974588-78974607 MS.gene41379:CDS 65.0%
!! GCATACGGTGCCACCACCTC+CGG + chr1.4:78974573-78974592 MS.gene41379:CDS 65.0%
ACCACCACCACCGGAGGTGG+TGG - chr1.4:78974586-78974605 None:intergenic 70.0%
GACAACGGAGCCTGCGGCTG+CGG + chr1.4:78974104-78974123 MS.gene41379:CDS 70.0%
GGCCGGCACAGTTCCAGTGC+CGG - chr1.4:78974385-78974404 None:intergenic 70.0%
TGACAGTGGCGGCGGCGAAG+AGG + chr1.4:78974190-78974209 MS.gene41379:CDS 70.0%
!! TACGGTGCCACCACCTCCGG+TGG + chr1.4:78974576-78974595 MS.gene41379:CDS 70.0%
! GCCACCACCTCCGGTGGTGG+TGG + chr1.4:78974582-78974601 MS.gene41379:CDS 75.0%
! GGTGCCACCACCTCCGGTGG+TGG + chr1.4:78974579-78974598 MS.gene41379:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 78974024 78975046 78974024 ID=MS.gene41379
chr1.4 mRNA 78974024 78975046 78974024 ID=MS.gene41379.t1;Parent=MS.gene41379
chr1.4 exon 78974024 78975046 78974024 ID=MS.gene41379.t1.exon1;Parent=MS.gene41379.t1
chr1.4 CDS 78974024 78975046 78974024 ID=cds.MS.gene41379.t1;Parent=MS.gene41379.t1
Gene Sequence

>MS.gene41379

ATGGAAGTGAACCCTAACGGCGGCGATGATGTTTTCTGTGAAGAAAACAACACTGACAATACTGAAGTATCTCCGTCGGAGACAACGGAGCCTGCGGCTGCGGTAATGAAAGAAGAGCTAACGGAAACGGAAAACAACAGCCTTATTCCGATGCCGGTTCAAACGATGACAGTGGCGGCGGCGAAGAGGTCATCGAAAGACCGTCACACGAAGGTGGAGGGACGTGGTCGGAGAATCAGGATTCCGGCGACATGCGCCGCCAGAATCTTTCAACTGACGAGGGAGCTAGGTCACAAATCCGACGGAGAAACAATCCGGTGGTTACTAGAACAAGCTGAACCTTCTATCATCGAAGCTACCGGCACTGGAACTGTGCCGGCCATCGCTGTTTCCGTCGGAGGTACGTTGAAGATTCCAACATCATCTCCGGCGAGACCGGACGGTGAAGATGCTCCGGTGAAAAGAAGAAGAAGAGCTTCAAACAGTGAGTTTGTTGACTTGAATGATCAAGTTTCAATGTGTTCTGGATTAGCCCCAATTGCTCAAACAGCATACGGTGCCACCACCTCCGGTGGTGGTGGTAGTGGTGAAAATGGTGGTGGTTTAGTTCCATTATGGCCTGTTGTAAGTAACGGTGTTGGGTCTAATACAACAGGACCATTTTTCATGTTCCCAAATTCAAGTTTAATGAATCAGCCACAGTTTTGGGCTATTCCTGCAGCACCATTTTTTAATGTGCAAACAAGACCTATTTCTGATTTTGTTTCTGCTATGCAAATGCCACAAGAACCTTCAAATGCTTCTACTGCTTATGCAAATTCCAATGCTTCATCTACTTTGGCTCCTAGTTTGAGTTCAGTAACTTCAACTAGTTGTTCTGCTACTACTTCTTCATCCTCTGCTACAAATACTCAGATGCTAAGGGATTTTTCATTGGATATTTTTGATAAGAAAGAGTTGCAGTTTATGGGTTGTTCTTCTGCAAATTTGGAATCATCTCCCTCTTCAAATCCTTCAAATTGA
Protein sequence

>MS.gene41379.t1

MEVNPNGGDDVFCEENNTDNTEVSPSETTEPAAAVMKEELTETENNSLIPMPVQTMTVAAAKRSSKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLEQAEPSIIEATGTGTVPAIAVSVGGTLKIPTSSPARPDGEDAPVKRRRRASNSEFVDLNDQVSMCSGLAPIAQTAYGATTSGGGGSGENGGGLVPLWPVVSNGVGSNTTGPFFMFPNSSLMNQPQFWAIPAAPFFNVQTRPISDFVSAMQMPQEPSNASTAYANSNASSTLAPSLSSVTSTSCSATTSSSSATNTQMLRDFSLDIFDKKELQFMGCSSANLESSPSSNPSN