AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41400.t1 MTR_6g051425 28.713 303 188 7 65 344 19 316 3.34e-32 129
MS.gene41400.t1 MTR_5g015480 46.364 110 58 1 54 162 47 156 4.47e-23 100
MS.gene41400.t1 MTR_0558s0020 24.812 266 161 5 68 305 41 295 1.38e-22 99.8
MS.gene41400.t1 MTR_0402s0040 31.282 195 130 3 54 247 17 208 3.17e-21 98.6
MS.gene41400.t1 MTR_6g017200 39.535 129 73 2 31 158 30 154 6.06e-21 90.9
MS.gene41400.t1 MTR_2g070590 41.818 110 63 1 54 162 8 117 1.93e-20 88.2
MS.gene41400.t1 MTR_4g067290 36.486 148 82 4 43 180 29 174 3.66e-20 90.9
MS.gene41400.t1 MTR_4g067290 35.915 142 82 3 43 177 29 168 6.15e-20 90.1
MS.gene41400.t1 MTR_4g067290 36.486 148 82 4 43 180 49 194 6.48e-20 90.9
MS.gene41400.t1 MTR_4g067290 36.486 148 82 4 43 180 89 234 9.59e-20 91.3
MS.gene41400.t1 MTR_4g067290 35.762 151 88 4 27 177 45 186 9.61e-20 90.1
MS.gene41400.t1 MTR_4g067290 35.762 151 88 4 27 177 47 188 1.08e-19 90.1
MS.gene41400.t1 MTR_1g057920 43.158 95 53 1 58 151 29 123 6.65e-19 84.0
MS.gene41400.t1 MTR_8g446020 25.926 189 127 2 123 305 74 255 2.85e-18 85.9
MS.gene41400.t1 MTR_5g039760 28.571 196 112 3 65 259 12 180 3.05e-17 81.3
MS.gene41400.t1 MTR_2g098920 37.755 98 60 1 65 162 82 178 4.97e-16 79.7
MS.gene41400.t1 MTR_6g090505 23.394 218 140 3 108 305 20 230 1.48e-15 79.7
MS.gene41400.t1 MTR_1g070355 26.250 240 159 7 69 300 80 309 6.44e-15 79.3
MS.gene41400.t1 MTR_7g113010 38.136 118 58 2 57 173 451 554 1.96e-14 77.8
MS.gene41400.t1 MTR_7g061980 36.607 112 68 3 65 175 12 121 6.58e-14 69.7
MS.gene41400.t1 MTR_1g083640 21.519 237 147 5 68 276 56 281 2.03e-12 69.3
MS.gene41400.t1 MTR_0137s0040 54.167 48 22 0 69 116 42 89 7.05e-12 63.5
MS.gene41400.t1 MTR_3g006370 29.870 154 93 2 66 204 53 206 1.03e-11 66.2
MS.gene41400.t1 MTR_2g098880 36.111 108 61 2 65 167 63 167 1.25e-11 66.2
MS.gene41400.t1 MTR_2g098880 36.111 108 61 2 65 167 75 179 1.73e-11 66.2
MS.gene41400.t1 MTR_3g450850 25.088 283 175 10 60 315 44 316 2.52e-11 66.6
MS.gene41400.t1 MTR_1g086270 31.250 80 55 0 360 439 1 80 4.80e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41400.t1 AT4G38180 30.970 691 453 6 13 682 6 693 3.90e-104 341
MS.gene41400.t1 AT3G06250 31.140 623 371 10 66 685 193 760 4.80e-91 305
MS.gene41400.t1 AT3G06250 34.343 99 52 1 65 163 30 115 2.24e-11 68.2
MS.gene41400.t1 AT3G06250 31.140 623 371 10 66 685 193 760 4.80e-91 305
MS.gene41400.t1 AT3G06250 34.343 99 52 1 65 163 30 115 2.24e-11 68.2
MS.gene41400.t1 AT3G06250 31.140 623 371 10 66 685 193 760 4.80e-91 305
MS.gene41400.t1 AT3G06250 34.343 99 52 1 65 163 30 115 2.24e-11 68.2
MS.gene41400.t1 AT4G15090 29.984 617 421 6 66 680 54 661 3.17e-90 304
MS.gene41400.t1 AT4G15090 29.984 617 421 6 66 680 54 661 3.17e-90 304
MS.gene41400.t1 AT4G15090 29.984 617 421 6 66 680 54 661 3.17e-90 304
MS.gene41400.t1 AT4G15090 29.984 617 421 6 66 680 54 661 3.17e-90 304
MS.gene41400.t1 AT4G15090 29.984 617 421 6 66 680 54 661 3.17e-90 304
MS.gene41400.t1 AT5G18960 30.159 630 371 13 66 685 214 784 7.08e-86 291
MS.gene41400.t1 AT5G18960 29.801 151 85 3 13 163 1 130 4.64e-12 70.5
MS.gene41400.t1 AT5G18960 30.159 630 371 13 66 685 214 784 7.08e-86 291
MS.gene41400.t1 AT5G18960 29.801 151 85 3 13 163 1 130 4.64e-12 70.5
MS.gene41400.t1 AT3G22170 26.621 725 451 10 2 698 16 687 3.28e-83 285
MS.gene41400.t1 AT3G22170 26.621 725 451 10 2 698 16 687 3.28e-83 285
MS.gene41400.t1 AT2G27110 30.941 627 393 13 65 689 51 639 7.64e-81 279
MS.gene41400.t1 AT2G27110 30.941 627 393 13 65 689 51 639 7.64e-81 279
MS.gene41400.t1 AT2G32250 28.183 699 424 15 14 704 4 632 1.81e-80 276
MS.gene41400.t1 AT2G32250 28.183 699 424 15 14 704 4 632 2.52e-80 276
MS.gene41400.t1 AT2G32250 28.183 699 424 15 14 704 4 632 2.52e-80 276
MS.gene41400.t1 AT2G32250 28.183 699 424 15 14 704 4 632 2.98e-80 276
MS.gene41400.t1 AT2G32250 28.183 699 424 15 14 704 4 632 2.98e-80 276
MS.gene41400.t1 AT2G32250 28.183 699 424 15 14 704 4 632 2.98e-80 276
MS.gene41400.t1 AT1G76320 29.268 615 411 7 69 680 3 596 5.16e-80 274
MS.gene41400.t1 AT1G76320 29.268 615 411 7 69 680 3 596 5.70e-80 274
MS.gene41400.t1 AT1G76320 29.268 615 411 7 69 680 3 596 5.70e-80 274
MS.gene41400.t1 AT1G76320 29.268 615 411 7 69 680 3 596 1.13e-79 271
MS.gene41400.t1 AT2G32250 28.416 644 398 12 69 704 3 591 1.14e-79 274
MS.gene41400.t1 AT2G32250 28.416 644 398 12 69 704 3 591 1.30e-79 274
MS.gene41400.t1 AT2G27110 32.591 494 313 8 197 689 20 494 1.59e-74 258
MS.gene41400.t1 AT4G19990 28.963 656 406 11 66 703 24 637 9.45e-73 254
MS.gene41400.t1 AT4G19990 28.963 656 406 11 66 703 24 637 9.45e-73 254
MS.gene41400.t1 AT4G19990 28.963 656 406 11 66 703 24 637 9.76e-73 254
MS.gene41400.t1 AT4G19990 28.963 656 406 11 66 703 38 651 1.26e-72 254
MS.gene41400.t1 AT4G19990 28.963 656 406 11 66 703 24 637 1.45e-72 254
MS.gene41400.t1 AT4G19990 28.963 656 406 11 66 703 24 637 1.45e-72 254
MS.gene41400.t1 AT4G38170 28.455 492 322 6 230 719 10 473 2.30e-72 248
MS.gene41400.t1 AT1G52520 27.932 648 406 18 64 685 86 698 3.45e-65 232
MS.gene41400.t1 AT4G19990 28.387 620 384 11 102 703 3 580 9.98e-65 231
MS.gene41400.t1 AT1G80010 26.977 645 424 17 66 685 98 720 5.21e-60 218
MS.gene41400.t1 AT1G10240 24.561 570 411 10 60 620 45 604 1.65e-49 187
MS.gene41400.t1 AT1G10240 24.561 570 411 10 60 620 45 604 1.65e-49 187
MS.gene41400.t1 AT5G28530 24.172 604 372 14 65 622 57 620 1.09e-42 166
MS.gene41400.t1 AT5G28530 23.645 609 365 15 65 622 57 616 7.95e-42 164
MS.gene41400.t1 AT5G28530 23.645 609 365 15 65 622 57 616 7.95e-42 164
MS.gene41400.t1 AT5G28530 24.062 320 220 6 312 622 252 557 1.36e-22 103
MS.gene41400.t1 AT5G28530 23.077 325 213 7 312 622 252 553 6.76e-22 101
MS.gene41400.t1 AT3G59470 40.816 98 57 1 65 162 72 168 1.27e-18 87.0
MS.gene41400.t1 AT3G59470 40.816 98 57 1 65 162 72 168 1.27e-18 87.0
MS.gene41400.t1 AT3G59470 40.816 98 57 1 65 162 84 180 1.71e-18 87.0
MS.gene41400.t1 AT3G07500 41.667 108 62 1 65 172 35 141 9.55e-18 83.6
MS.gene41400.t1 AT2G43280 29.221 154 94 3 66 204 25 178 2.49e-13 70.5
MS.gene41400.t1 AT4G12850 32.653 98 63 1 65 162 13 107 4.64e-13 67.8
MS.gene41400.t1 AT4G12850 32.653 98 63 1 65 162 13 107 7.24e-12 64.3
MS.gene41400.t1 AT4G12850 32.653 98 63 1 65 162 13 107 1.50e-11 64.7

Find 178 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTCGGACTGCAACAATTT+TGG 0.148412 1.4:+78691764 None:intergenic
GGTTGACTCATATCATAATT+TGG 0.153971 1.4:-78691293 MS.gene41400:CDS
AGGATTCTGAATGAGGATTT+TGG 0.176822 1.4:+78688858 None:intergenic
CATGTATACCGGTTTGTTTC+AGG 0.203703 1.4:+78690752 None:intergenic
CAGCTTGCTACAACCATCTT+AGG 0.224643 1.4:+78689942 None:intergenic
AGACCATTGAATCATTTAAT+TGG 0.226837 1.4:-78690874 MS.gene41400:CDS
CGGACTCAGGGTATGTGTTT+TGG 0.248605 1.4:+78689041 None:intergenic
ACTTAACGCTGAACTAGATT+TGG 0.266339 1.4:+78691267 None:intergenic
ATTCGGCATCTTTAACAAAA+TGG 0.267339 1.4:+78690690 None:intergenic
GATTATGTTGTGCTTCAAAA+TGG 0.267872 1.4:+78691395 None:intergenic
GTGGTAGATTACGACCATTT+TGG 0.280325 1.4:-78691019 MS.gene41400:CDS
TTAGAAAAGATTGGATTAAT+AGG 0.287407 1.4:-78691588 MS.gene41400:CDS
ACTTTCATTGGCGCAATGTC+TGG 0.289475 1.4:-78690842 MS.gene41400:CDS
CTTACCTGCAAAAGGAGATT+TGG 0.313290 1.4:+78689516 None:intergenic
CCTCCACTATCCTTTCAAAA+TGG 0.316329 1.4:+78690402 None:intergenic
TTCTGTGAGGGAAAGAGATA+TGG 0.326936 1.4:-78691173 MS.gene41400:CDS
AGTAAATTCTTCCTCGTCCT+TGG 0.329251 1.4:+78690631 None:intergenic
AGTATGACGAATACAAAATT+AGG 0.330231 1.4:-78691247 MS.gene41400:CDS
AAGATAATTGTCATAATTCA+TGG 0.332546 1.4:+78691198 None:intergenic
ACCACATTACCCATTAGTTT+TGG 0.332898 1.4:+78690329 None:intergenic
ACTTGGAACATCCAATAGTT+TGG 0.334138 1.4:-78691800 MS.gene41400:CDS
GGCTTTGTCAACACAGTGTT+GGG 0.338463 1.4:-78691688 MS.gene41400:CDS
GTAAATTCTTCCTCGTCCTT+GGG 0.340043 1.4:+78690632 None:intergenic
CACATTCAAGTCCAAACTAT+TGG 0.341769 1.4:+78691789 None:intergenic
CATGCATTGAACCACTTCAT+TGG 0.347987 1.4:+78689267 None:intergenic
GAGTATAAAGTGAATACATT+TGG 0.351199 1.4:-78690188 MS.gene41400:CDS
CCGAACGTTCTTCACGCTAA+TGG 0.356305 1.4:-78691748 MS.gene41400:CDS
AGCATCTTGTTCTGTGATAA+TGG 0.360975 1.4:+78690805 None:intergenic
AACAACATGTTAGAATTGAT+TGG 0.361206 1.4:+78691358 None:intergenic
TTTCTGGGCTGATGACAATA+TGG 0.363592 1.4:-78691041 MS.gene41400:CDS
GTTGACTCATATCATAATTT+GGG 0.366463 1.4:-78691292 MS.gene41400:CDS
TACATGGTATGGCGGTTTCT+AGG 0.367496 1.4:-78691558 MS.gene41400:CDS
AGTATAAAGTGAATACATTT+GGG 0.372000 1.4:-78690187 MS.gene41400:CDS
GGGACGTCTTCCAAAACTAA+TGG 0.374298 1.4:-78690339 MS.gene41400:CDS
GGTTCAATGTTAGAAAAGAT+TGG 0.384400 1.4:-78691597 MS.gene41400:CDS
CCACAGACTTGTCAAGTTAT+CGG 0.386090 1.4:-78689904 MS.gene41400:CDS
CATCGGAAGGAGACGAGAAC+TGG 0.388859 1.4:-78691472 MS.gene41400:CDS
GATGTCAAAGGCTTTCATTT+AGG 0.388977 1.4:-78690491 MS.gene41400:CDS
TGTTCTGTGATAATGGCCTT+TGG 0.398291 1.4:+78690812 None:intergenic
TGAAATATTTCAAATGCTCT+TGG 0.400052 1.4:+78690275 None:intergenic
AATCCTTTGCAAATGATCTA+AGG 0.402754 1.4:-78690670 MS.gene41400:CDS
TTATTGCTTGGCACGGACTC+AGG 0.403375 1.4:+78689028 None:intergenic
TTTGGTTGAGATGAAACATA+TGG 0.404147 1.4:+78689534 None:intergenic
CTTAACGCTGAACTAGATTT+GGG 0.404554 1.4:+78691268 None:intergenic
GGAGACGAGAACTGGGTGTT+TGG 0.406715 1.4:-78691464 MS.gene41400:CDS
AGGAGAAGCTGGGCGTTTGA+TGG 0.408337 1.4:-78691146 MS.gene41400:CDS
AGAAGTTTGGCGGTTGGAAC+AGG 0.408816 1.4:+78689200 None:intergenic
TGTTGGTTAGAATAGAAGTT+TGG 0.411083 1.4:+78689187 None:intergenic
GAGAAATGGGCTGTCTGCTT+TGG 0.411646 1.4:-78690533 MS.gene41400:CDS
AACAAACAACATCCCCAAAA+TGG 0.411804 1.4:+78691005 None:intergenic
TGAGATGGATGTATAGAGAA+AGG 0.414378 1.4:-78690556 MS.gene41400:CDS
TAGATCATTTGCAAAGGATT+CGG 0.414395 1.4:+78690673 None:intergenic
TGGCTGTTTCGAACTTTCAT+TGG 0.414516 1.4:-78690854 MS.gene41400:CDS
GTATAGAGAAAGGGAGAAAT+GGG 0.415013 1.4:-78690546 MS.gene41400:CDS
TGTATAGAGAAAGGGAGAAA+TGG 0.415562 1.4:-78690547 MS.gene41400:CDS
TGTATTATCTGAAGAATTGA+AGG 0.418492 1.4:+78690142 None:intergenic
AACATTGAACCCCATCAATC+TGG 0.425557 1.4:+78691609 None:intergenic
ACAACATGTTAGAATTGATT+GGG 0.429453 1.4:+78691359 None:intergenic
AGTCAGAACTTCGGTATCTA+TGG 0.430265 1.4:+78688819 None:intergenic
ACCGTTGGTTGGCACCTATC+CGG 0.436386 1.4:+78689642 None:intergenic
TGGACATGCGACTGAGGATC+AGG 0.436653 1.4:-78689709 MS.gene41400:CDS
TAACAAGTATGCCAGATTGA+TGG 0.451658 1.4:-78691620 MS.gene41400:CDS
GTCAACACAGTGTTGGGAAT+CGG 0.451939 1.4:-78691682 MS.gene41400:CDS
AATGGCTCTCAAACTCAATC+TGG 0.454597 1.4:-78691730 MS.gene41400:CDS
AACAAGTATGCCAGATTGAT+GGG 0.458593 1.4:-78691619 MS.gene41400:CDS
CAGCCAATTAAATGATTCAA+TGG 0.460545 1.4:+78690871 None:intergenic
ACCTATCCGGTGTAGCGGTC+CGG 0.463718 1.4:+78689655 None:intergenic
TCCTCAGTCGCATGTCCATT+CGG 0.464228 1.4:+78689714 None:intergenic
GATAAAAGCTTACCTGCAAA+AGG 0.465295 1.4:+78689508 None:intergenic
TGATGATCCAACACAAGATC+AGG 0.465463 1.4:+78689235 None:intergenic
ATCTACATGAATACTATTTG+AGG 0.467176 1.4:+78689767 None:intergenic
ATGCAAGGTTGGGTAATGTC+AGG 0.468937 1.4:-78689995 MS.gene41400:CDS
GAGATGGATGTATAGAGAAA+GGG 0.473743 1.4:-78690555 MS.gene41400:CDS
AGAAGCTAGTGATGAAATGA+AGG 0.475887 1.4:-78690360 MS.gene41400:CDS
GGACGTCTTCCAAAACTAAT+GGG 0.478872 1.4:-78690338 MS.gene41400:CDS
CAAACCGGTATACATGTGTT+TGG 0.479174 1.4:-78690745 MS.gene41400:CDS
TGTTGCATCTGATTATTGCT+TGG 0.479286 1.4:+78689016 None:intergenic
ATGGTCACACAGCAGGATAC+AGG 0.483241 1.4:+78688838 None:intergenic
CAGACAACAGTATTTGAAGA+AGG 0.483624 1.4:+78689576 None:intergenic
AGCTTGCTACAACCATCTTA+GGG 0.484144 1.4:+78689943 None:intergenic
ATAGTCAAACTGATTCAGAT+AGG 0.484318 1.4:-78689614 MS.gene41400:CDS
GAGGCAACTTGACGAAGTTA+TGG 0.484472 1.4:-78689841 MS.gene41400:CDS
AGGGAAAGAGATATGGGTAA+AGG 0.486429 1.4:-78691166 MS.gene41400:CDS
GATATGGGTAAAGGAGAAGC+TGG 0.488628 1.4:-78691157 MS.gene41400:CDS
AATTCTAGATAACCCTAAGA+TGG 0.489622 1.4:-78689955 MS.gene41400:CDS
CTCGATATATCTTGAAGAGA+TGG 0.495398 1.4:-78690025 MS.gene41400:CDS
AAGCAATAATCAGATGCAAC+AGG 0.498238 1.4:-78689014 MS.gene41400:intron
CTTTCATTGGCGCAATGTCT+GGG 0.499304 1.4:-78690841 MS.gene41400:CDS
GACTATAATTCACCGTTGGT+TGG 0.504813 1.4:+78689631 None:intergenic
GGAGAAGCTGGGCGTTTGAT+GGG 0.504828 1.4:-78691145 MS.gene41400:CDS
TCTGGTAATGCATCAGCAAA+TGG 0.509074 1.4:-78691712 MS.gene41400:CDS
ACGATATCCCTCTCTGGAGC+AGG 0.509622 1.4:+78691528 None:intergenic
GATGGTGATCATAACAACTT+AGG 0.510043 1.4:-78691853 MS.gene41400:CDS
CCATTAGCGTGAAGAACGTT+CGG 0.511332 1.4:+78691748 None:intergenic
ATTATGTTGTGCTTCAAAAT+GGG 0.511977 1.4:+78691396 None:intergenic
TAGGAGTAAGGTACATGGTA+TGG 0.513386 1.4:-78691569 MS.gene41400:CDS
GGTATCTATGGTCACACAGC+AGG 0.514778 1.4:+78688831 None:intergenic
GTCATCAACATCGAGCTGTA+TGG 0.515154 1.4:+78691078 None:intergenic
TGAGATGAAACATATGGAGA+TGG 0.517004 1.4:+78689540 None:intergenic
GAGATGAAACATATGGAGAT+GGG 0.517572 1.4:+78689541 None:intergenic
ATGGACAAAAGATGCAAGGT+TGG 0.517774 1.4:-78690006 MS.gene41400:CDS
AATTGACCGGACCGCTACAC+CGG 0.518366 1.4:-78689661 MS.gene41400:CDS
TAGAATAGAAGTTTGGCGGT+TGG 0.518493 1.4:+78689194 None:intergenic
ATCATTACTCGTCAACAAGA+TGG 0.520020 1.4:-78691433 MS.gene41400:CDS
GAAAATGTTGATGTTGGACT+TGG 0.524439 1.4:-78691817 MS.gene41400:CDS
TTTCCTACGATATCCCTCTC+TGG 0.525239 1.4:+78691522 None:intergenic
TGGTTAGAATAGAAGTTTGG+CGG 0.528921 1.4:+78689190 None:intergenic
CATGTAGAAAATGTTGATGT+TGG 0.531700 1.4:-78691823 MS.gene41400:CDS
AGATTGGATTAATAGGAGTA+AGG 0.541743 1.4:-78691581 MS.gene41400:CDS
ATAAACTCCAGCAAAATGAA+TGG 0.541841 1.4:-78690580 MS.gene41400:CDS
AGGCTTTGTCAACACAGTGT+TGG 0.544299 1.4:-78691689 MS.gene41400:CDS
CAATAGTTTGGACTTGAATG+TGG 0.544732 1.4:-78691788 MS.gene41400:CDS
TGGACAAAAGATGCAAGGTT+GGG 0.547513 1.4:-78690005 MS.gene41400:CDS
AGGAAGAATTTACTCATGCA+TGG 0.553445 1.4:-78690622 MS.gene41400:CDS
AGCAAAATGAATGGTTGAGA+TGG 0.555206 1.4:-78690571 MS.gene41400:CDS
GGAAGAATTTACTCATGCAT+GGG 0.556248 1.4:-78690621 MS.gene41400:CDS
TTGTGTTGCTCAAGCTGTGG+AGG 0.559431 1.4:-78691314 MS.gene41400:CDS
TATTGCTTGGCACGGACTCA+GGG 0.560639 1.4:+78689029 None:intergenic
CACAGTGTTGGGAATCGGTA+CGG 0.564445 1.4:-78691677 MS.gene41400:CDS
GTCAACCAGCACAAAAGAGA+TGG 0.564837 1.4:-78690221 MS.gene41400:CDS
AGGATACAGGATTCTGAATG+AGG 0.564937 1.4:+78688851 None:intergenic
CAATTATCTTCATTCTGTGA+GGG 0.569801 1.4:-78691185 MS.gene41400:CDS
TCCAAAACTAATGGGTAATG+TGG 0.570979 1.4:-78690330 MS.gene41400:CDS
TAAATTCTTCCTCGTCCTTG+GGG 0.571062 1.4:+78690633 None:intergenic
TAAGAAATTGAACTACATCA+AGG 0.574535 1.4:+78690426 None:intergenic
GTTTGACTATAATTCACCGT+TGG 0.577214 1.4:+78689627 None:intergenic
AAAGGCATGGAGAACTCTGT+TGG 0.577643 1.4:+78689170 None:intergenic
TCTGTGAGGGAAAGAGATAT+GGG 0.578639 1.4:-78691172 MS.gene41400:CDS
AATCTTGATATTGAAAAGTG+AGG 0.582977 1.4:-78689805 MS.gene41400:CDS
ACCGGATAGGTGCCAACCAA+CGG 0.586821 1.4:-78689643 MS.gene41400:CDS
AAATTTACCTGCTCCAGAGA+GGG 0.588352 1.4:-78691535 MS.gene41400:CDS
TACTGTGAAGAAACATCGGA+AGG 0.591189 1.4:-78691485 MS.gene41400:CDS
ATGCCTTTCTCAACTATCGC+AGG 0.592046 1.4:-78689155 MS.gene41400:intron
TCTGCCAAACACATGTATAC+CGG 0.592642 1.4:+78690741 None:intergenic
CCATTCGGAAAGATCACCGC+AGG 0.593497 1.4:+78689729 None:intergenic
ACACCTGCGATAGTTGAGAA+AGG 0.595685 1.4:+78689152 None:intergenic
GGCAAGAGCTTCTGAATCTG+TGG 0.597094 1.4:-78689883 MS.gene41400:CDS
ATCGGAAGGAGACGAGAACT+GGG 0.599087 1.4:-78691471 MS.gene41400:CDS
TGCAAGGTTGGGTAATGTCA+GGG 0.602166 1.4:-78689994 MS.gene41400:CDS
AGAATTTACTCATGCATGGG+GGG 0.603236 1.4:-78690618 MS.gene41400:CDS
CATCTGATTATTGCTTGGCA+CGG 0.603767 1.4:+78689021 None:intergenic
TATATATGACCCCAAGGACG+AGG 0.604602 1.4:-78690642 MS.gene41400:CDS
ACTCCTTAGATCATTTGCAA+AGG 0.605967 1.4:+78690667 None:intergenic
TCCGAATGGACATGCGACTG+AGG 0.607571 1.4:-78689715 MS.gene41400:CDS
GAGTAAGCGAAGAAATTGAC+CGG 0.608524 1.4:-78689674 MS.gene41400:CDS
ACAATTATCTTCATTCTGTG+AGG 0.613083 1.4:-78691186 MS.gene41400:CDS
AGATGAAACATATGGAGATG+GGG 0.614637 1.4:+78689542 None:intergenic
CTCTTCAAGATATATCGAGA+TGG 0.620754 1.4:+78690029 None:intergenic
TCAACAAGATGGAAAATACC+AGG 0.623065 1.4:-78691422 MS.gene41400:CDS
CCTGCGGTGATCTTTCCGAA+TGG 0.627373 1.4:-78689729 MS.gene41400:CDS
TGTATGAAGTTTGAGCATGT+TGG 0.628085 1.4:-78690107 MS.gene41400:CDS
GTGCTTCAAAATGGGTAACC+TGG 0.628259 1.4:+78691404 None:intergenic
TGCGATAGTTGAGAAAGGCA+TGG 0.628795 1.4:+78689157 None:intergenic
GATGAAACATATGGAGATGG+GGG 0.631905 1.4:+78689543 None:intergenic
AAGAGCTTCTGAATCTGTGG+AGG 0.632101 1.4:-78689880 MS.gene41400:CDS
AGAGATGGACAAAAGATGCA+AGG 0.632488 1.4:-78690010 MS.gene41400:CDS
TGCTTCAGAAAGTGAGCCTG+CGG 0.635679 1.4:-78689745 MS.gene41400:CDS
GAAGAATTTACTCATGCATG+GGG 0.636671 1.4:-78690620 MS.gene41400:CDS
TGAACAGCCTGATCTTGTGT+TGG 0.638281 1.4:-78689242 MS.gene41400:CDS
TTGGCACCTATCCGGTGTAG+CGG 0.643827 1.4:+78689650 None:intergenic
CAACTTGACGAAGTTATGGA+AGG 0.645660 1.4:-78689837 MS.gene41400:CDS
ATATGGGTAAAGGAGAAGCT+GGG 0.649693 1.4:-78691156 MS.gene41400:CDS
CCGATAACTTGACAAGTCTG+TGG 0.655057 1.4:+78689904 None:intergenic
GTTATGCAGAGTCAGAACTT+CGG 0.656200 1.4:+78688810 None:intergenic
ACCGGACCGCTACACCGGAT+AGG 0.656631 1.4:-78689656 MS.gene41400:CDS
GAAGCTAGTGATGAAATGAA+GGG 0.656707 1.4:-78690359 MS.gene41400:CDS
GAGTTGTATATATGACCCCA+AGG 0.660099 1.4:-78690648 MS.gene41400:CDS
AAGAATTTACTCATGCATGG+GGG 0.660335 1.4:-78690619 MS.gene41400:CDS
ATTAATAGGAGTAAGGTACA+TGG 0.662022 1.4:-78691574 MS.gene41400:CDS
GAAATTTACCTGCTCCAGAG+AGG 0.668278 1.4:-78691536 MS.gene41400:CDS
CTGGGCTGATGACAATATGG+TGG 0.677851 1.4:-78691038 MS.gene41400:CDS
GGTAATGCATCAGCAAATGG+AGG 0.677979 1.4:-78691709 MS.gene41400:CDS
ACAAGTATGCCAGATTGATG+GGG 0.683870 1.4:-78691618 MS.gene41400:CDS
AGGCTTATCAGTTTGCTGTG+AGG 0.686136 1.4:-78689860 MS.gene41400:CDS
GAGTAAGGTACATGGTATGG+CGG 0.692517 1.4:-78691566 MS.gene41400:CDS
ATGAAACATATGGAGATGGG+GGG 0.693657 1.4:+78689544 None:intergenic
GCTCCAGAGAGGGATATCGT+AGG 0.703657 1.4:-78691525 MS.gene41400:CDS
AATCATCGAAGCAATCAATG+TGG 0.773569 1.4:-78690780 MS.gene41400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATAATTGTCATAATTCA+TGG + chr1.4:78689472-78689491 None:intergenic 20.0%
!! AGTATAAAGTGAATACATTT+GGG - chr1.4:78690480-78690499 MS.gene41400:CDS 20.0%
!! TCATTTATTTGATTGATATG+TGG - chr1.4:78691180-78691199 MS.gene41400:CDS 20.0%
!! TTAGAAAAGATTGGATTAAT+AGG - chr1.4:78689079-78689098 MS.gene41400:intron 20.0%
!!! AATTTCTTAACCATTTTGAA+AGG - chr1.4:78690255-78690274 MS.gene41400:CDS 20.0%
!!! ATATCATGAATATTTTACTC+AGG - chr1.4:78691593-78691612 MS.gene41400:CDS 20.0%
! AACAACATGTTAGAATTGAT+TGG + chr1.4:78689312-78689331 None:intergenic 25.0%
! AATCTTGATATTGAAAAGTG+AGG - chr1.4:78690862-78690881 MS.gene41400:CDS 25.0%
! ACAACATGTTAGAATTGATT+GGG + chr1.4:78689311-78689330 None:intergenic 25.0%
! AGACCATTGAATCATTTAAT+TGG - chr1.4:78689793-78689812 MS.gene41400:CDS 25.0%
! AGTATGACGAATACAAAATT+AGG - chr1.4:78689420-78689439 MS.gene41400:intron 25.0%
! ATCAAAAAAAACCTAATGAC+TGG + chr1.4:78691549-78691568 None:intergenic 25.0%
! ATCTACATGAATACTATTTG+AGG + chr1.4:78690903-78690922 None:intergenic 25.0%
! ATTATGTTGTGCTTCAAAAT+GGG + chr1.4:78689274-78689293 None:intergenic 25.0%
! CATATAGAGCATATTTGATA+TGG - chr1.4:78691219-78691238 MS.gene41400:CDS 25.0%
! GAGTATAAAGTGAATACATT+TGG - chr1.4:78690479-78690498 MS.gene41400:CDS 25.0%
! TAAGAAATTGAACTACATCA+AGG + chr1.4:78690244-78690263 None:intergenic 25.0%
! TGAAATATTTCAAATGCTCT+TGG + chr1.4:78690395-78690414 None:intergenic 25.0%
! TGTATTATCTGAAGAATTGA+AGG + chr1.4:78690528-78690547 None:intergenic 25.0%
!! ACAAGATAACAAATCTTTTC+TGG - chr1.4:78689610-78689629 MS.gene41400:CDS 25.0%
!! ATTTTACTGTGAAGAAACAT+CGG - chr1.4:78689178-78689197 MS.gene41400:CDS 25.0%
!! CAAGATAACAAATCTTTTCT+GGG - chr1.4:78689611-78689630 MS.gene41400:CDS 25.0%
!! GTTGACTCATATCATAATTT+GGG - chr1.4:78689375-78689394 MS.gene41400:intron 25.0%
!! TGTTAATTTTTCCAGTCATT+AGG - chr1.4:78691535-78691554 MS.gene41400:CDS 25.0%
!!! AGATTTTTTGTAGATGTCAA+AGG - chr1.4:78690164-78690183 MS.gene41400:CDS 25.0%
!!! ATTCTCTCATTTGTTTTACA+GGG - chr1.4:78691360-78691379 MS.gene41400:CDS 25.0%
!!! CTTTGTGTATATTTGTTGTA+GGG - chr1.4:78691771-78691790 MS.gene41400:CDS 25.0%
AATCCTTTGCAAATGATCTA+AGG - chr1.4:78689997-78690016 MS.gene41400:CDS 30.0%
AATTCTAGATAACCCTAAGA+TGG - chr1.4:78690712-78690731 MS.gene41400:CDS 30.0%
ACAATTATCTTCATTCTGTG+AGG - chr1.4:78689481-78689500 MS.gene41400:intron 30.0%
ACACCTAAAAACTGTACAAA+TGG + chr1.4:78689723-78689742 None:intergenic 30.0%
AGATTGGATTAATAGGAGTA+AGG - chr1.4:78689086-78689105 MS.gene41400:intron 30.0%
ATAAACTCCAGCAAAATGAA+TGG - chr1.4:78690087-78690106 MS.gene41400:CDS 30.0%
ATTAATAGGAGTAAGGTACA+TGG - chr1.4:78689093-78689112 MS.gene41400:intron 30.0%
ATTCGGCATCTTTAACAAAA+TGG + chr1.4:78689980-78689999 None:intergenic 30.0%
CAATTATCTTCATTCTGTGA+GGG - chr1.4:78689482-78689501 MS.gene41400:intron 30.0%
CAGCCAATTAAATGATTCAA+TGG + chr1.4:78689799-78689818 None:intergenic 30.0%
CATGTAGAAAATGTTGATGT+TGG - chr1.4:78688844-78688863 MS.gene41400:CDS 30.0%
GATTATGTTGTGCTTCAAAA+TGG + chr1.4:78689275-78689294 None:intergenic 30.0%
GGTTCAATGTTAGAAAAGAT+TGG - chr1.4:78689070-78689089 MS.gene41400:intron 30.0%
TAGATCATTTGCAAAGGATT+CGG + chr1.4:78689997-78690016 None:intergenic 30.0%
TGTATGGCATAAAAAAATGC+TGG + chr1.4:78689576-78689595 None:intergenic 30.0%
TTTGGTTGAGATGAAACATA+TGG + chr1.4:78691136-78691155 None:intergenic 30.0%
! ATAGTCAAACTGATTCAGAT+AGG - chr1.4:78691053-78691072 MS.gene41400:CDS 30.0%
! GGTTGACTCATATCATAATT+TGG - chr1.4:78689374-78689393 MS.gene41400:intron 30.0%
! GTTTTATGCTCGTTAACTTT+TGG - chr1.4:78691282-78691301 MS.gene41400:CDS 30.0%
! TATCAAGAACTTTTAGTGCA+TGG + chr1.4:78690598-78690617 None:intergenic 30.0%
! TGTTGGTTAGAATAGAAGTT+TGG + chr1.4:78691483-78691502 None:intergenic 30.0%
!! GCTTTGTGTATATTTGTTGT+AGG - chr1.4:78691770-78691789 MS.gene41400:CDS 30.0%
!! TAACCATTTTGAAAGGATAG+TGG - chr1.4:78690262-78690281 MS.gene41400:CDS 30.0%
!! TGTATATTTGTTGTAGGGTA+TGG - chr1.4:78691776-78691795 MS.gene41400:CDS 30.0%
!!! GATTCTCTCATTTGTTTTAC+AGG - chr1.4:78691359-78691378 MS.gene41400:CDS 30.0%
!!! GTTTGATGGGTTATTTTCAA+AGG - chr1.4:78689535-78689554 MS.gene41400:CDS 30.0%
!!! TTTGTTTTACAGGGCTTATT+TGG - chr1.4:78691369-78691388 MS.gene41400:CDS 30.0%
AACAAACAACATCCCCAAAA+TGG + chr1.4:78689665-78689684 None:intergenic 35.0%
AACAAGTATGCCAGATTGAT+GGG - chr1.4:78689048-78689067 MS.gene41400:CDS 35.0%
AAGAATTTACTCATGCATGG+GGG - chr1.4:78690048-78690067 MS.gene41400:CDS 35.0%
AAGCAATAATCAGATGCAAC+AGG - chr1.4:78691653-78691672 MS.gene41400:CDS 35.0%
AATCATCGAAGCAATCAATG+TGG - chr1.4:78689887-78689906 MS.gene41400:CDS 35.0%
ACTCCTTAGATCATTTGCAA+AGG + chr1.4:78690003-78690022 None:intergenic 35.0%
ACTTAACGCTGAACTAGATT+TGG + chr1.4:78689403-78689422 None:intergenic 35.0%
ACTTGGAACATCCAATAGTT+TGG - chr1.4:78688867-78688886 MS.gene41400:CDS 35.0%
AGAAGCTAGTGATGAAATGA+AGG - chr1.4:78690307-78690326 MS.gene41400:CDS 35.0%
AGATGAAACATATGGAGATG+GGG + chr1.4:78691128-78691147 None:intergenic 35.0%
AGCAAAATGAATGGTTGAGA+TGG - chr1.4:78690096-78690115 MS.gene41400:CDS 35.0%
AGCATCTTGTTCTGTGATAA+TGG + chr1.4:78689865-78689884 None:intergenic 35.0%
AGGAAGAATTTACTCATGCA+TGG - chr1.4:78690045-78690064 MS.gene41400:CDS 35.0%
ATCATTACTCGTCAACAAGA+TGG - chr1.4:78689234-78689253 MS.gene41400:CDS 35.0%
CAATAGTTTGGACTTGAATG+TGG - chr1.4:78688879-78688898 MS.gene41400:intron 35.0%
CACATTCAAGTCCAAACTAT+TGG + chr1.4:78688881-78688900 None:intergenic 35.0%
CAGACAACAGTATTTGAAGA+AGG + chr1.4:78691094-78691113 None:intergenic 35.0%
CTCGATATATCTTGAAGAGA+TGG - chr1.4:78690642-78690661 MS.gene41400:CDS 35.0%
CTCTTCAAGATATATCGAGA+TGG + chr1.4:78690641-78690660 None:intergenic 35.0%
CTTAACGCTGAACTAGATTT+GGG + chr1.4:78689402-78689421 None:intergenic 35.0%
GAAAATGTTGATGTTGGACT+TGG - chr1.4:78688850-78688869 MS.gene41400:CDS 35.0%
GAAGAATTTACTCATGCATG+GGG - chr1.4:78690047-78690066 MS.gene41400:CDS 35.0%
GAAGCTAGTGATGAAATGAA+GGG - chr1.4:78690308-78690327 MS.gene41400:CDS 35.0%
GAGATGAAACATATGGAGAT+GGG + chr1.4:78691129-78691148 None:intergenic 35.0%
GAGATGGATGTATAGAGAAA+GGG - chr1.4:78690112-78690131 MS.gene41400:CDS 35.0%
GATAAAAGCTTACCTGCAAA+AGG + chr1.4:78691162-78691181 None:intergenic 35.0%
GATGGTGATCATAACAACTT+AGG - chr1.4:78688814-78688833 MS.gene41400:CDS 35.0%
GATGTCAAAGGCTTTCATTT+AGG - chr1.4:78690176-78690195 MS.gene41400:CDS 35.0%
GCATATTTGATATGGAGATC+AGG - chr1.4:78691227-78691246 MS.gene41400:CDS 35.0%
GGAAGAATTTACTCATGCAT+GGG - chr1.4:78690046-78690065 MS.gene41400:CDS 35.0%
GTATAGAGAAAGGGAGAAAT+GGG - chr1.4:78690121-78690140 MS.gene41400:CDS 35.0%
GTTTGACTATAATTCACCGT+TGG + chr1.4:78691043-78691062 None:intergenic 35.0%
TAACAAGTATGCCAGATTGA+TGG - chr1.4:78689047-78689066 MS.gene41400:CDS 35.0%
TCAACAAGATGGAAAATACC+AGG - chr1.4:78689245-78689264 MS.gene41400:CDS 35.0%
TGAGATGAAACATATGGAGA+TGG + chr1.4:78691130-78691149 None:intergenic 35.0%
TGAGATGGATGTATAGAGAA+AGG - chr1.4:78690111-78690130 MS.gene41400:CDS 35.0%
TGGTTAGAATAGAAGTTTGG+CGG + chr1.4:78691480-78691499 None:intergenic 35.0%
TGTATAGAGAAAGGGAGAAA+TGG - chr1.4:78690120-78690139 MS.gene41400:CDS 35.0%
TGTATGAAGTTTGAGCATGT+TGG - chr1.4:78690560-78690579 MS.gene41400:CDS 35.0%
TGTTGCATCTGATTATTGCT+TGG + chr1.4:78691654-78691673 None:intergenic 35.0%
! AATATCCATCTCTTTTGTGC+TGG + chr1.4:78690454-78690473 None:intergenic 35.0%
! AGGATTCTGAATGAGGATTT+TGG + chr1.4:78691812-78691831 None:intergenic 35.0%
! ATCTCAACCATTCATTTTGC+TGG + chr1.4:78690097-78690116 None:intergenic 35.0%
! TCCAAAACTAATGGGTAATG+TGG - chr1.4:78690337-78690356 MS.gene41400:CDS 35.0%
! TGGTAGATTACGACCATTTT+GGG - chr1.4:78689649-78689668 MS.gene41400:CDS 35.0%
!! ACCACATTACCCATTAGTTT+TGG + chr1.4:78690341-78690360 None:intergenic 35.0%
!! GGGTATGTGTTTTGGATTAT+AGG + chr1.4:78691621-78691640 None:intergenic 35.0%
!! TGGTTTTACCTGAAACAAAC+CGG - chr1.4:78689907-78689926 MS.gene41400:CDS 35.0%
!! TTTTGGGGATGTTGTTTGTT+TGG - chr1.4:78689665-78689684 MS.gene41400:CDS 35.0%
!!! TGGTTTTGAAACCAATGAAG+TGG - chr1.4:78691389-78691408 MS.gene41400:CDS 35.0%
AAATTTACCTGCTCCAGAGA+GGG - chr1.4:78689132-78689151 MS.gene41400:intron 40.0%
AACATTGAACCCCATCAATC+TGG + chr1.4:78689061-78689080 None:intergenic 40.0%
AATGGCTCTCAAACTCAATC+TGG - chr1.4:78688937-78688956 MS.gene41400:intron 40.0%
AATGTCTGGGAAAAAGCCAA+AGG - chr1.4:78689839-78689858 MS.gene41400:CDS 40.0%
ACAAGTATGCCAGATTGATG+GGG - chr1.4:78689049-78689068 MS.gene41400:CDS 40.0%
AGAATTTACTCATGCATGGG+GGG - chr1.4:78690049-78690068 MS.gene41400:CDS 40.0%
AGAGATGGACAAAAGATGCA+AGG - chr1.4:78690657-78690676 MS.gene41400:CDS 40.0%
AGGATACAGGATTCTGAATG+AGG + chr1.4:78691819-78691838 None:intergenic 40.0%
AGGGAAAGAGATATGGGTAA+AGG - chr1.4:78689501-78689520 MS.gene41400:intron 40.0%
AGTAAATTCTTCCTCGTCCT+TGG + chr1.4:78690039-78690058 None:intergenic 40.0%
AGTCAGAACTTCGGTATCTA+TGG + chr1.4:78691851-78691870 None:intergenic 40.0%
ATATGGGTAAAGGAGAAGCT+GGG - chr1.4:78689511-78689530 MS.gene41400:intron 40.0%
ATGAAACATATGGAGATGGG+GGG + chr1.4:78691126-78691145 None:intergenic 40.0%
ATGGACAAAAGATGCAAGGT+TGG - chr1.4:78690661-78690680 MS.gene41400:CDS 40.0%
CAAACCGGTATACATGTGTT+TGG - chr1.4:78689922-78689941 MS.gene41400:CDS 40.0%
CAACTTGACGAAGTTATGGA+AGG - chr1.4:78690830-78690849 MS.gene41400:CDS 40.0%
CATCTGATTATTGCTTGGCA+CGG + chr1.4:78691649-78691668 None:intergenic 40.0%
CATGCATTGAACCACTTCAT+TGG + chr1.4:78691403-78691422 None:intergenic 40.0%
CCACAGACTTGTCAAGTTAT+CGG - chr1.4:78690763-78690782 MS.gene41400:CDS 40.0%
CCTCCACTATCCTTTCAAAA+TGG + chr1.4:78690268-78690287 None:intergenic 40.0%
CTTACCTGCAAAAGGAGATT+TGG + chr1.4:78691154-78691173 None:intergenic 40.0%
GACTATAATTCACCGTTGGT+TGG + chr1.4:78691039-78691058 None:intergenic 40.0%
GAGTAAGCGAAGAAATTGAC+CGG - chr1.4:78690993-78691012 MS.gene41400:CDS 40.0%
GAGTTGTATATATGACCCCA+AGG - chr1.4:78690019-78690038 MS.gene41400:CDS 40.0%
GATGAAACATATGGAGATGG+GGG + chr1.4:78691127-78691146 None:intergenic 40.0%
GGACGTCTTCCAAAACTAAT+GGG - chr1.4:78690329-78690348 MS.gene41400:CDS 40.0%
GTAAATTCTTCCTCGTCCTT+GGG + chr1.4:78690038-78690057 None:intergenic 40.0%
TAAATTCTTCCTCGTCCTTG+GGG + chr1.4:78690037-78690056 None:intergenic 40.0%
TACTGTGAAGAAACATCGGA+AGG - chr1.4:78689182-78689201 MS.gene41400:CDS 40.0%
TAGAATAGAAGTTTGGCGGT+TGG + chr1.4:78691476-78691495 None:intergenic 40.0%
TAGGAGTAAGGTACATGGTA+TGG - chr1.4:78689098-78689117 MS.gene41400:intron 40.0%
TCTGCCAAACACATGTATAC+CGG + chr1.4:78689929-78689948 None:intergenic 40.0%
TCTGTGAGGGAAAGAGATAT+GGG - chr1.4:78689495-78689514 MS.gene41400:intron 40.0%
TGATGATCCAACACAAGATC+AGG + chr1.4:78691435-78691454 None:intergenic 40.0%
TGGACAAAAGATGCAAGGTT+GGG - chr1.4:78690662-78690681 MS.gene41400:CDS 40.0%
TTCTGTGAGGGAAAGAGATA+TGG - chr1.4:78689494-78689513 MS.gene41400:intron 40.0%
TTTCTGGGCTGATGACAATA+TGG - chr1.4:78689626-78689645 MS.gene41400:CDS 40.0%
! CGGCCATTTGTACAGTTTTT+AGG - chr1.4:78689717-78689736 MS.gene41400:CDS 40.0%
! GGTAGATTACGACCATTTTG+GGG - chr1.4:78689650-78689669 MS.gene41400:CDS 40.0%
! GTGGTAGATTACGACCATTT+TGG - chr1.4:78689648-78689667 MS.gene41400:CDS 40.0%
! TCAACCAAATCTCCTTTTGC+AGG - chr1.4:78691147-78691166 MS.gene41400:CDS 40.0%
! TCTGGTAATGCATCAGCAAA+TGG - chr1.4:78688955-78688974 MS.gene41400:intron 40.0%
! TGGCTGTTTCGAACTTTCAT+TGG - chr1.4:78689813-78689832 MS.gene41400:CDS 40.0%
!! AGCTTGCTACAACCATCTTA+GGG + chr1.4:78690727-78690746 None:intergenic 40.0%
!! ATTTTGTGTTGCTCAAGCTG+TGG - chr1.4:78689350-78689369 MS.gene41400:intron 40.0%
!! CATGTATACCGGTTTGTTTC+AGG + chr1.4:78689918-78689937 None:intergenic 40.0%
!! CCATTTTGAAAGGATAGTGG+AGG - chr1.4:78690265-78690284 MS.gene41400:CDS 40.0%
!! TGTTCTGTGATAATGGCCTT+TGG + chr1.4:78689858-78689877 None:intergenic 40.0%
AAGAGCTTCTGAATCTGTGG+AGG - chr1.4:78690787-78690806 MS.gene41400:CDS 45.0%
ACACCTGCGATAGTTGAGAA+AGG + chr1.4:78691518-78691537 None:intergenic 45.0%
ACTTTCATTGGCGCAATGTC+TGG - chr1.4:78689825-78689844 MS.gene41400:CDS 45.0%
ATGCAAGGTTGGGTAATGTC+AGG - chr1.4:78690672-78690691 MS.gene41400:CDS 45.0%
ATGCCTTTCTCAACTATCGC+AGG - chr1.4:78691512-78691531 MS.gene41400:CDS 45.0%
CCATTAGCGTGAAGAACGTT+CGG + chr1.4:78688922-78688941 None:intergenic 45.0%
CCGATAACTTGACAAGTCTG+TGG + chr1.4:78690766-78690785 None:intergenic 45.0%
CGATAACCCACCACAAATCT+GGG + chr1.4:78691720-78691739 None:intergenic 45.0%
CTTTCATTGGCGCAATGTCT+GGG - chr1.4:78689826-78689845 MS.gene41400:CDS 45.0%
GAAATTTACCTGCTCCAGAG+AGG - chr1.4:78689131-78689150 MS.gene41400:intron 45.0%
GAGGCAACTTGACGAAGTTA+TGG - chr1.4:78690826-78690845 MS.gene41400:CDS 45.0%
GAGTAAGGTACATGGTATGG+CGG - chr1.4:78689101-78689120 MS.gene41400:intron 45.0%
GATATGGGTAAAGGAGAAGC+TGG - chr1.4:78689510-78689529 MS.gene41400:intron 45.0%
GGGACGTCTTCCAAAACTAA+TGG - chr1.4:78690328-78690347 MS.gene41400:CDS 45.0%
GGTAATGCATCAGCAAATGG+AGG - chr1.4:78688958-78688977 MS.gene41400:intron 45.0%
GTCAACCAGCACAAAAGAGA+TGG - chr1.4:78690446-78690465 MS.gene41400:CDS 45.0%
GTCATCAACATCGAGCTGTA+TGG + chr1.4:78689592-78689611 None:intergenic 45.0%
GTGCTTCAAAATGGGTAACC+TGG + chr1.4:78689266-78689285 None:intergenic 45.0%
TACATGGTATGGCGGTTTCT+AGG - chr1.4:78689109-78689128 MS.gene41400:intron 45.0%
TATATATGACCCCAAGGACG+AGG - chr1.4:78690025-78690044 MS.gene41400:CDS 45.0%
TGAACAGCCTGATCTTGTGT+TGG - chr1.4:78691425-78691444 MS.gene41400:CDS 45.0%
TGCAAGGTTGGGTAATGTCA+GGG - chr1.4:78690673-78690692 MS.gene41400:CDS 45.0%
TGCGATAGTTGAGAAAGGCA+TGG + chr1.4:78691513-78691532 None:intergenic 45.0%
TTTCCTACGATATCCCTCTC+TGG + chr1.4:78689148-78689167 None:intergenic 45.0%
! AAAGGCATGGAGAACTCTGT+TGG + chr1.4:78691500-78691519 None:intergenic 45.0%
! AGGCTTTGTCAACACAGTGT+TGG - chr1.4:78688978-78688997 MS.gene41400:intron 45.0%
! CGTTCGGACTGCAACAATTT+TGG + chr1.4:78688906-78688925 None:intergenic 45.0%
! GCAGAACAGACAGAGCTTTT+CGG - chr1.4:78689697-78689716 MS.gene41400:CDS 45.0%
! GGCTTTGTCAACACAGTGTT+GGG - chr1.4:78688979-78688998 MS.gene41400:intron 45.0%
! GTCAACACAGTGTTGGGAAT+CGG - chr1.4:78688985-78689004 MS.gene41400:intron 45.0%
!! AGGCTTATCAGTTTGCTGTG+AGG - chr1.4:78690807-78690826 MS.gene41400:CDS 45.0%
!! CAGATTTGTGGTGGGTTATC+GGG - chr1.4:78691719-78691738 MS.gene41400:CDS 45.0%
!! CAGCTTGCTACAACCATCTT+AGG + chr1.4:78690728-78690747 None:intergenic 45.0%
!! CCAGATTTGTGGTGGGTTAT+CGG - chr1.4:78691718-78691737 MS.gene41400:CDS 45.0%
AAACCCCCTTCCCAGATTTG+TGG - chr1.4:78691707-78691726 MS.gene41400:CDS 50.0%
AACCCACCACAAATCTGGGA+AGG + chr1.4:78691716-78691735 None:intergenic 50.0%
ACCCACCACAAATCTGGGAA+GGG + chr1.4:78691715-78691734 None:intergenic 50.0%
AGAAGTTTGGCGGTTGGAAC+AGG + chr1.4:78691470-78691489 None:intergenic 50.0%
ATCGGAAGGAGACGAGAACT+GGG - chr1.4:78689196-78689215 MS.gene41400:CDS 50.0%
ATGGTCACACAGCAGGATAC+AGG + chr1.4:78691832-78691851 None:intergenic 50.0%
CCGAACGTTCTTCACGCTAA+TGG - chr1.4:78688919-78688938 MS.gene41400:intron 50.0%
CCGATAACCCACCACAAATC+TGG + chr1.4:78691721-78691740 None:intergenic 50.0%
CTGGGCTGATGACAATATGG+TGG - chr1.4:78689629-78689648 MS.gene41400:CDS 50.0%
GGCAAGAGCTTCTGAATCTG+TGG - chr1.4:78690784-78690803 MS.gene41400:CDS 50.0%
GGGTTATCGGGTGTTTATGG+TGG - chr1.4:78691731-78691750 MS.gene41400:CDS 50.0%
GGTATCTATGGTCACACAGC+AGG + chr1.4:78691839-78691858 None:intergenic 50.0%
TATTGCTTGGCACGGACTCA+GGG + chr1.4:78691641-78691660 None:intergenic 50.0%
TCCTCAGTCGCATGTCCATT+CGG + chr1.4:78690956-78690975 None:intergenic 50.0%
TGCTTCAGAAAGTGAGCCTG+CGG - chr1.4:78690922-78690941 MS.gene41400:CDS 50.0%
TTATTGCTTGGCACGGACTC+AGG + chr1.4:78691642-78691661 None:intergenic 50.0%
! CACAGTGTTGGGAATCGGTA+CGG - chr1.4:78688990-78689009 MS.gene41400:intron 50.0%
! CGGACTCAGGGTATGTGTTT+TGG + chr1.4:78691629-78691648 None:intergenic 50.0%
! TTGTGTTGCTCAAGCTGTGG+AGG - chr1.4:78689353-78689372 MS.gene41400:intron 50.0%
!! GAGAAATGGGCTGTCTGCTT+TGG - chr1.4:78690134-78690153 MS.gene41400:CDS 50.0%
!! GGTGGGTTATCGGGTGTTTA+TGG - chr1.4:78691728-78691747 MS.gene41400:CDS 50.0%
AATTGACCGGACCGCTACAC+CGG - chr1.4:78691006-78691025 MS.gene41400:CDS 55.0%
ACCGGATAGGTGCCAACCAA+CGG - chr1.4:78691024-78691043 MS.gene41400:CDS 55.0%
AGGAGAAGCTGGGCGTTTGA+TGG - chr1.4:78689521-78689540 MS.gene41400:CDS 55.0%
CATCGGAAGGAGACGAGAAC+TGG - chr1.4:78689195-78689214 MS.gene41400:CDS 55.0%
CCACCACAAATCTGGGAAGG+GGG + chr1.4:78691713-78691732 None:intergenic 55.0%
CCATTCGGAAAGATCACCGC+AGG + chr1.4:78690941-78690960 None:intergenic 55.0%
CCCACCACAAATCTGGGAAG+GGG + chr1.4:78691714-78691733 None:intergenic 55.0%
CCCCTTCCCAGATTTGTGGT+GGG - chr1.4:78691711-78691730 MS.gene41400:CDS 55.0%
CCTGCGGTGATCTTTCCGAA+TGG - chr1.4:78690938-78690957 MS.gene41400:CDS 55.0%
GCTCCAGAGAGGGATATCGT+AGG - chr1.4:78689142-78689161 MS.gene41400:intron 55.0%
GGAGAAGCTGGGCGTTTGAT+GGG - chr1.4:78689522-78689541 MS.gene41400:CDS 55.0%
GGAGACGAGAACTGGGTGTT+TGG - chr1.4:78689203-78689222 MS.gene41400:CDS 55.0%
TCATGCATGGGGGGTTATGC+TGG - chr1.4:78690058-78690077 MS.gene41400:CDS 55.0%
TCCGAATGGACATGCGACTG+AGG - chr1.4:78690952-78690971 MS.gene41400:CDS 55.0%
TGGACATGCGACTGAGGATC+AGG - chr1.4:78690958-78690977 MS.gene41400:CDS 55.0%
TTGGCACCTATCCGGTGTAG+CGG + chr1.4:78691020-78691039 None:intergenic 55.0%
! ACCGTTGGTTGGCACCTATC+CGG + chr1.4:78691028-78691047 None:intergenic 55.0%
!! ACGATATCCCTCTCTGGAGC+AGG + chr1.4:78689142-78689161 None:intergenic 55.0%
ACCTATCCGGTGTAGCGGTC+CGG + chr1.4:78691015-78691034 None:intergenic 60.0%
CCCCCTTCCCAGATTTGTGG+TGG - chr1.4:78691710-78691729 MS.gene41400:CDS 60.0%
ACCGGACCGCTACACCGGAT+AGG - chr1.4:78691011-78691030 MS.gene41400:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 78688811 78691878 78688811 ID=MS.gene41400
chr1.4 mRNA 78688811 78691878 78688811 ID=MS.gene41400.t1;Parent=MS.gene41400
chr1.4 exon 78689521 78691878 78689521 ID=MS.gene41400.t1.exon1;Parent=MS.gene41400.t1
chr1.4 CDS 78689521 78691878 78689521 ID=cds.MS.gene41400.t1;Parent=MS.gene41400.t1
chr1.4 exon 78689156 78689308 78689156 ID=MS.gene41400.t1.exon2;Parent=MS.gene41400.t1
chr1.4 CDS 78689156 78689308 78689156 ID=cds.MS.gene41400.t1;Parent=MS.gene41400.t1
chr1.4 exon 78689015 78689074 78689015 ID=MS.gene41400.t1.exon3;Parent=MS.gene41400.t1
chr1.4 CDS 78689015 78689074 78689015 ID=cds.MS.gene41400.t1;Parent=MS.gene41400.t1
chr1.4 exon 78688811 78688897 78688811 ID=MS.gene41400.t1.exon4;Parent=MS.gene41400.t1
chr1.4 CDS 78688811 78688897 78688811 ID=cds.MS.gene41400.t1;Parent=MS.gene41400.t1
Gene Sequence

>MS.gene41400

ATGGATGGTGATCATAACAACTTAGGTAATGTGCATGTAGAAAATGTTGATGTTGGACTTGGAACATCCAATAGTTTGGACTTGAATGTGGACCAAAATTGTTGCAGTCCGAACGTTCTTCACGCTAATGGCTCTCAAACTCAATCTGGTAATGCATCAGCAAATGGAGGCTTTGTCAACACAGTGTTGGGAATCGGTACGGTATTTGAGTCTGATGAACATGCGTATAGATTCTATAACAAGTATGCCAGATTGATGGGGTTCAATGTTAGAAAAGATTGGATTAATAGGAGTAAGGTACATGGTATGGCGGTTTCTAGGAAATTTACCTGCTCCAGAGAGGGATATCGTAGGAAAGACAAGAGAGATTTTACTGTGAAGAAACATCGGAAGGAGACGAGAACTGGGTGTTTGGCACACATGATCATTACTCGTCAACAAGATGGAAAATACCAGGTTACCCATTTTGAAGCACAACATAATCATGATGATATAAACCCAATCAATTCTAACATGTTGTTACTAGAGTTGCAAAATGAATTTTGTGTTGCTCAAGCTGTGGAGGTTGACTCATATCATAATTTGGGACCCAAATCTAGTTCAGCGTTAAGTATGACGAATACAAAATTAGGTGCACGTGATTCTCTTGATCAACTTTCCATGAATTATGACAATTATCTTCATTCTGTGAGGGAAAGAGATATGGGTAAAGGAGAAGCTGGGCGTTTGATGGGTTATTTTCAAAGGCAACACTTTGAAAATCCAGCATTTTTTTATGCCATACAGCTCGATGTTGATGACAAGATAACAAATCTTTTCTGGGCTGATGACAATATGGTGGTAGATTACGACCATTTTGGGGATGTTGTTTGTTTGGATACAACTTGCAGAACAGACAGAGCTTTTCGGCCATTTGTACAGTTTTTAGGTGTTAATCATCACAAACAAGTATTAATATTTGCTGCTGCTTTTTTGTATGATGAGACCATTGAATCATTTAATTGGCTGTTTCGAACTTTCATTGGCGCAATGTCTGGGAAAAAGCCAAAGGCCATTATCACAGAACAAGATGCTGCAATCATCGAAGCAATCAATGTGGTTTTACCTGAAACAAACCGGTATACATGTGTTTGGCAGATGTATGAGAACACTCTTAAACATCTCAGCCATTTTGTTAAAGATGCCGAATCCTTTGCAAATGATCTAAGGAGTTGTATATATGACCCCAAGGACGAGGAAGAATTTACTCATGCATGGGGGGTTATGCTGGAGAAATATAAACTCCAGCAAAATGAATGGTTGAGATGGATGTATAGAGAAAGGGAGAAATGGGCTGTCTGCTTTGGTCAGAATAGATTTTTTGTAGATGTCAAAGGCTTTCATTTAGGTGAGATGTTGTCTCACAAGCTTAGAAGCTATCTAAATTCTGACCTTGATGTAGTTCAATTTCTTAACCATTTTGAAAGGATAGTGGAGGAGCAACGATATAAAGAAATAGAAGCTAGTGATGAAATGAAGGGACGTCTTCCAAAACTAATGGGTAATGTGGTTGTGTTGAAACATGCTAGTGTTGCTTATACTCCAAGAGCATTTGAAATATTTCAGCAACGATATGAGAACTCTTTGAATGTTATTGTCAACCAGCACAAAAGAGATGGATATTTGTTTGAGTATAAAGTGAATACATTTGGGCATGCTAGACAGTACACTGTCACCTTCAATTCTTCAGATAATACAGTTGTCTGCAGTTGTATGAAGTTTGAGCATGTTGGCTTTCTTTGTAGCCATGCACTAAAAGTTCTTGATAATAGAAACATAAAAGTAGTTCCATCTCGATATATCTTGAAGAGATGGACAAAAGATGCAAGGTTGGGTAATGTCAGGGAGATTAAGCAATTTAAAATTCTAGATAACCCTAAGATGGTTGTAGCAAGCTGTTACAAAGATTTATGCCACAGACTTGTCAAGTTATCGGCAAGAGCTTCTGAATCTGTGGAGGCTTATCAGTTTGCTGTGAGGCAACTTGACGAAGTTATGGAAGGAGTGCAGAAAATCTTGATATTGAAAAGTGAGGAAGCTCAAGTTATCACCTCAAATAGTATTCATGTAGATGCTTCAGAAAGTGAGCCTGCGGTGATCTTTCCGAATGGACATGCGACTGAGGATCAGGATGAAAGTAACAGAGTAAGCGAAGAAATTGACCGGACCGCTACACCGGATAGGTGCCAACCAACGGTGAATTATAGTCAAACTGATTCAGATAGGATTTTAAATGTAGAACCTTCTTCAAATACTGTTGTCTGCATTTCAAGCCCCCCATCTCCATATGTTTCATCTCAACCAAATCTCCTTTTGCAGGTAAGCTTTTATCATTTATTTGATTGATATGTGGTAGCTTGTATTGTTGTCATATAGAGCATATTTGATATGGAGATCAGGAAGTTTAATGCTCTTTCTTTTTTTGCAATGAAGTTTTATGCTCGTTAACTTTTGGAGAATAAGCTCTGTATAATTTTTGAAATAAAAAATAAAGAGAATGACATTTGTTGATTCTCTCATTTGTTTTACAGGGCTTATTTGGTTTTGAAACCAATGAAGTGGTTCAATGCATGTATGAACAGCCTGATCTTGTGTTGGATCATCAATCTAATACTAACCTGTTCCAACCGCCAAACTTCTATTCTAACCAACAGAGTTCTCCATGCCTTTCTCAACTATCGCAGGTGTTAATTTTTCCAGTCATTAGGTTTTTTTTGATGCAGAATATGTTACTTTGTATAACATATCATGAATATTTTACTCAGGAGCCTATAATCCAAAACACATACCCTGAGTCCGTGCCAAGCAATAATCAGATGCAACAGGTAAACATTTACTTAATGATCATAATTTGAACAAACCCCCTTCCCAGATTTGTGGTGGGTTATCGGGTGTTTATGGTGGAAAACTAATTGCATCTGCTTTGTGTATATTTGTTGTAGGGTATGGATCTTGATATCCAAAATCCTCATTCAGAATCCTGTATCCTGCTGTGTGACCATAGATACCGAAGTTCTGACTCTGCATAA
Protein sequence

>MS.gene41400.t1

MDGDHNNLGNVHVENVDVGLGTSNSLDLNVDQNCCSPNVLHANGSQTQSGNASANGGFVNTVLGIGTVFESDEHAYRFYNKYARLMGFNVRKDWINRSKVHGMAVSRKFTCSREGYRRKDKRDFTVKKHRKETRTGCLAHMIITRQQDGKYQVTHFEAQHNHDDINPINSNMLLLELQNEFCVAQAVEVDSYHNLGPKSSSALSMTNTKLGARDSLDQLSMNYDNYLHSVRERDMGKGEAGRLMGYFQRQHFENPAFFYAIQLDVDDKITNLFWADDNMVVDYDHFGDVVCLDTTCRTDRAFRPFVQFLGVNHHKQVLIFAAAFLYDETIESFNWLFRTFIGAMSGKKPKAIITEQDAAIIEAINVVLPETNRYTCVWQMYENTLKHLSHFVKDAESFANDLRSCIYDPKDEEEFTHAWGVMLEKYKLQQNEWLRWMYREREKWAVCFGQNRFFVDVKGFHLGEMLSHKLRSYLNSDLDVVQFLNHFERIVEEQRYKEIEASDEMKGRLPKLMGNVVVLKHASVAYTPRAFEIFQQRYENSLNVIVNQHKRDGYLFEYKVNTFGHARQYTVTFNSSDNTVVCSCMKFEHVGFLCSHALKVLDNRNIKVVPSRYILKRWTKDARLGNVREIKQFKILDNPKMVVASCYKDLCHRLVKLSARASESVEAYQFAVRQLDEVMEGVQKILILKSEEAQVITSNSIHVDASESEPAVIFPNGHATEDQDESNRVSEEIDRTATPDRCQPTVNYSQTDSDRILNVEPSSNTVVCISSPPSPYVSSQPNLLLQGLFGFETNEVVQCMYEQPDLVLDHQSNTNLFQPPNFYSNQQSSPCLSQLSQEPIIQNTYPESVPSNNQMQQGMDLDIQNPHSESCILLCDHRYRSSDSA