AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41406

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41406.t1 MTR_1g100777 89.474 304 26 2 1 299 1 303 0.0 523
MS.gene41406.t1 MTR_0020s0020 56.047 339 105 9 1 296 1 338 2.47e-107 316
MS.gene41406.t1 MTR_5g010680 50.909 275 102 7 5 252 6 274 7.90e-78 241
MS.gene41406.t1 MTR_5g089170 47.594 187 90 1 10 196 17 195 2.15e-56 182
MS.gene41406.t1 MTR_3g101870 44.907 216 89 4 10 196 16 230 3.51e-56 186
MS.gene41406.t1 MTR_5g017470 51.381 181 68 3 11 178 2 175 1.49e-51 171
MS.gene41406.t1 MTR_7g091370 38.583 254 113 4 12 265 16 226 6.09e-49 163
MS.gene41406.t1 MTR_4g088900 39.024 205 97 5 4 199 17 202 2.75e-41 142
MS.gene41406.t1 MTR_5g029680 65.957 94 32 0 16 109 30 123 5.16e-41 149
MS.gene41406.t1 MTR_7g095680 60.638 94 37 0 16 109 47 140 4.05e-40 143
MS.gene41406.t1 MTR_1g071360 61.702 94 36 0 16 109 30 123 4.25e-38 137
MS.gene41406.t1 MTR_6g043060 57.143 105 42 1 17 118 21 125 5.06e-38 137
MS.gene41406.t1 MTR_1g071360 61.702 94 36 0 16 109 27 120 5.86e-38 138
MS.gene41406.t1 MTR_1g102860 61.702 94 36 0 16 109 38 131 1.23e-36 134
MS.gene41406.t1 MTR_4g077970 40.782 179 85 2 18 196 12 169 2.56e-36 135
MS.gene41406.t1 MTR_8g087540 55.000 100 45 0 14 113 8 107 5.30e-36 133
MS.gene41406.t1 MTR_1g061170 41.860 172 69 2 12 182 43 184 1.48e-35 133
MS.gene41406.t1 MTR_2g100680 57.143 98 42 0 16 113 29 126 6.25e-35 131
MS.gene41406.t1 MTR_6g086805 56.311 103 45 0 9 111 2 104 1.09e-34 129
MS.gene41406.t1 MTR_8g083100 56.842 95 41 0 19 113 23 117 2.85e-34 130
MS.gene41406.t1 MTR_3g104550 51.402 107 52 0 16 122 44 150 6.23e-34 127
MS.gene41406.t1 MTR_2g017890 48.062 129 61 3 6 133 4 127 1.33e-32 124
MS.gene41406.t1 MTR_2g100670 52.041 98 47 0 16 113 31 128 2.52e-32 122
MS.gene41406.t1 MTR_2g100670 53.125 96 45 0 16 111 139 234 1.87e-31 121
MS.gene41406.t1 MTR_8g105780 54.255 94 42 1 17 109 21 114 2.26e-28 112
MS.gene41406.t1 MTR_4g045757 63.793 58 21 0 18 75 14 71 3.85e-21 85.9
MS.gene41406.t1 MTR_5g047190 38.462 91 49 2 26 109 1 91 2.15e-14 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41406.t1 AT5G62020 47.636 275 110 6 11 262 16 279 1.04e-75 234
MS.gene41406.t1 AT4G11660 47.887 284 94 5 10 247 51 326 3.09e-70 222
MS.gene41406.t1 AT1G46264 46.569 204 89 3 13 196 29 232 6.51e-57 187
MS.gene41406.t1 AT4G36990 48.000 200 86 2 11 201 7 197 2.40e-55 181
MS.gene41406.t1 AT2G41690 46.667 180 96 0 16 195 38 217 8.15e-45 152
MS.gene41406.t1 AT4G17750 64.000 100 36 0 14 113 48 147 9.75e-41 148
MS.gene41406.t1 AT3G22830 64.583 96 34 0 14 109 57 152 8.13e-40 144
MS.gene41406.t1 AT1G32330 60.748 107 37 1 16 122 35 136 2.23e-39 144
MS.gene41406.t1 AT1G32330 60.748 107 37 1 16 122 35 136 2.38e-39 144
MS.gene41406.t1 AT3G02990 62.500 96 36 0 14 109 19 114 3.70e-38 140
MS.gene41406.t1 AT5G16820 64.130 92 33 0 18 109 27 118 3.83e-37 138
MS.gene41406.t1 AT5G16820 64.130 92 33 0 18 109 27 118 3.83e-37 138
MS.gene41406.t1 AT3G63350 54.630 108 48 1 1 108 12 118 1.58e-36 132
MS.gene41406.t1 AT5G03720 43.030 165 65 2 18 182 55 190 4.23e-36 134
MS.gene41406.t1 AT5G03720 43.030 165 65 2 18 182 55 190 4.23e-36 134
MS.gene41406.t1 AT5G43840 56.311 103 45 0 16 118 17 119 1.09e-35 130
MS.gene41406.t1 AT3G51910 50.943 106 52 0 16 121 27 132 3.25e-35 128
MS.gene41406.t1 AT5G54070 59.783 92 37 0 17 108 70 161 7.24e-35 129
MS.gene41406.t1 AT2G26150 56.383 94 41 0 16 109 42 135 1.17e-34 129
MS.gene41406.t1 AT2G26150 56.383 94 41 0 16 109 42 135 1.17e-34 129
MS.gene41406.t1 AT4G13980 50.909 110 51 1 19 125 24 133 3.58e-33 127
MS.gene41406.t1 AT3G24520 58.696 92 38 0 18 109 17 108 3.08e-32 122
MS.gene41406.t1 AT1G67970 43.182 132 74 1 18 148 19 150 1.04e-31 121
MS.gene41406.t1 AT5G45710 50.407 123 59 1 6 128 3 123 1.24e-31 120
MS.gene41406.t1 AT5G45710 50.407 123 59 1 6 128 3 123 1.24e-31 120
MS.gene41406.t1 AT4G18880 55.660 106 46 1 8 113 6 110 3.62e-31 120
MS.gene41406.t1 AT4G18870 41.304 92 51 1 14 102 139 230 4.06e-19 85.9
MS.gene41406.t1 AT4G18870 37.755 98 56 3 10 105 5 99 1.74e-16 78.6
MS.gene41406.t1 AT1G77570 38.636 88 49 3 19 102 27 113 5.73e-11 60.1

Find 82 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGCGTCGCCGTCAATTTC+AGG 0.165701 1.4:+78627043 MS.gene41406:CDS
TTGTTGTGCTTAAAATATTT+AGG 0.304096 1.4:-78626724 None:intergenic
TCACTATCCCAAACAGCTTC+GGG 0.348275 1.4:-78627339 None:intergenic
CTGGAACAACGTTCATCGTT+TGG 0.365852 1.4:+78626671 MS.gene41406:CDS
ATAGAAACCCGAAGCTGTTT+GGG 0.374692 1.4:+78627332 MS.gene41406:CDS
ATCACTATCCCAAACAGCTT+CGG 0.383314 1.4:-78627340 None:intergenic
CCACATGAACAGAATGATTC+AGG 0.388437 1.4:-78627420 None:intergenic
GATAGAAACCCGAAGCTGTT+TGG 0.391219 1.4:+78627331 MS.gene41406:CDS
AATCAGAGCCGTTTGATTCA+AGG 0.418470 1.4:+78627449 MS.gene41406:CDS
GTGATTTCGTGGAATGAAAC+TGG 0.429118 1.4:+78626652 MS.gene41406:CDS
ACCGGAGAAGCGGGCGGCGG+TGG 0.436618 1.4:+78627306 MS.gene41406:CDS
TCCACCGCCGCCCGCTTCTC+CGG 0.438689 1.4:-78627307 None:intergenic
CGAGAATGAGAGGTTGAGAA+AGG 0.441779 1.4:+78627126 MS.gene41406:CDS
GTCAATTTCAGGGGAGGAGC+AGG 0.455410 1.4:+78627054 MS.gene41406:CDS
CCGGCATTGGAAGCTGCCGC+CGG 0.458057 1.4:-78626983 None:intergenic
TGTTACAGTCGTGCCGGCAT+TGG 0.462484 1.4:-78626996 None:intergenic
TCACCCTTCCTTGAATCAAA+CGG 0.468104 1.4:-78627457 None:intergenic
TTAGAGAATTCCCACCGATC+AGG 0.468408 1.4:-78626890 None:intergenic
TCGCGTCGCCGTCAATTTCA+GGG 0.475190 1.4:+78627044 MS.gene41406:CDS
ATCAACAAGGTGATATGTCT+TGG 0.476007 1.4:-78626611 None:intergenic
TCGTTTGTTACCGGAGAAGC+GGG 0.481702 1.4:+78627297 MS.gene41406:CDS
AAGCAAATCCCTAGCGAAAA+CGG 0.486758 1.4:-78626701 None:intergenic
ATGTTGCTCAACGGCGTCGC+CGG 0.492568 1.4:+78627264 MS.gene41406:CDS
CCGGCGGCAGCTTCCAATGC+CGG 0.495670 1.4:+78626983 MS.gene41406:CDS
GCAGTTAACAAAGGAAATAG+AGG 0.498390 1.4:+78627156 MS.gene41406:CDS
GAATTACATAAGTATTGAGT+TGG 0.503981 1.4:-78626765 None:intergenic
GCGAAGGGAGCGAGAGGAGA+AGG 0.505444 1.4:+78627367 MS.gene41406:CDS
TGCTCCTCCCCTGAAATTGA+CGG 0.505469 1.4:-78627052 None:intergenic
TCACCAACGATGTGATTTCG+TGG 0.508504 1.4:+78626641 MS.gene41406:CDS
GCAGACGCTTCGTTTGTTAC+CGG 0.526094 1.4:+78627288 MS.gene41406:CDS
TTCGTTTGTTACCGGAGAAG+CGG 0.527929 1.4:+78627296 MS.gene41406:CDS
TGAATCTTTCCGACGAGGCG+AGG 0.528771 1.4:+78626913 MS.gene41406:CDS
ATTCAAGGAAGGGTGAAAAG+AGG 0.529327 1.4:+78627464 MS.gene41406:CDS
TGATATGTCTTGGTGAGAAA+CGG 0.529943 1.4:-78626601 None:intergenic
CCTCAGCATGGCTCCGTCGG+TGG 0.535536 1.4:+78626543 None:intergenic
TTCCTCGCCGTCAAATTCTC+CGG 0.536709 1.4:+78627090 MS.gene41406:CDS
GTTACCGGAGAAGCGGGCGG+CGG 0.537247 1.4:+78627303 MS.gene41406:CDS
ATTCCTCAGCATGGCTCCGT+CGG 0.539067 1.4:+78626540 None:intergenic
AGGAGAAGGACGGTGTATTG+AGG 0.542287 1.4:+78627381 MS.gene41406:CDS
ATTCCACGAAATCACATCGT+TGG 0.546456 1.4:-78626644 None:intergenic
GAAAATCGTTTCAGCATCGC+CGG 0.555017 1.4:+78626964 MS.gene41406:CDS
GAATTACGCAAATTCTCAAA+CGG 0.560736 1.4:+78627219 MS.gene41406:CDS
AAAAGTTGTACCTGATCGGT+GGG 0.563579 1.4:+78626880 MS.gene41406:CDS
GAAATTGACGGCGACGCGAT+AGG 0.563683 1.4:-78627040 None:intergenic
TGGGATAGTGATTGATGCGA+AGG 0.564853 1.4:+78627351 MS.gene41406:CDS
CGCTACTAGACGAGAATGAG+AGG 0.567007 1.4:+78627116 MS.gene41406:CDS
AAATCCCTAGCGAAAACGGT+AGG 0.568543 1.4:-78626697 None:intergenic
AGCGCCGCCGGAGAATTTGA+CGG 0.570000 1.4:-78627097 None:intergenic
TTCTCAAACGGAAGGCGGTG+CGG 0.570972 1.4:+78627231 MS.gene41406:CDS
CAAACGGAAGGCGGTGCGGA+AGG 0.571648 1.4:+78627235 MS.gene41406:CDS
GAGCCGTTTGATTCAAGGAA+GGG 0.572438 1.4:+78627454 MS.gene41406:CDS
TTCTCGTCTAGTAGCGCCGC+CGG 0.574568 1.4:-78627109 None:intergenic
AACAAACGAAGCGTCTGCAC+CGG 0.577210 1.4:-78627283 None:intergenic
GCTCCGTCGGTGGAACATAA+CGG 0.578392 1.4:+78626553 MS.gene41406:CDS
ATTGATGCGAAGGGAGCGAG+AGG 0.590361 1.4:+78627361 MS.gene41406:CDS
GGTGAGAAACGGCGTCGGAG+TGG 0.597255 1.4:-78626590 None:intergenic
CTTTCCGACGAGGCGAGGAA+CGG 0.598393 1.4:+78626918 MS.gene41406:CDS
AGAGCCGTTTGATTCAAGGA+AGG 0.601442 1.4:+78627453 MS.gene41406:CDS
CGCCGGAGAATTTGACGGCG+AGG 0.602724 1.4:-78627092 None:intergenic
AATCCCTAGCGAAAACGGTA+GGG 0.608706 1.4:-78626696 None:intergenic
TACGCAAATTCTCAAACGGA+AGG 0.609476 1.4:+78627223 MS.gene41406:CDS
GTCGCCGTCAATTTCAGGGG+AGG 0.611650 1.4:+78627048 MS.gene41406:CDS
TTTGTTACCGGAGAAGCGGG+CGG 0.612649 1.4:+78627300 MS.gene41406:CDS
GCAAATTCTCAAACGGAAGG+CGG 0.615095 1.4:+78627226 MS.gene41406:CDS
TTCTCTGTGATATTCAGCGA+CGG 0.625241 1.4:+78626942 MS.gene41406:CDS
CGCGTCGCCGTCAATTTCAG+GGG 0.626408 1.4:+78627045 MS.gene41406:CDS
GACGCGATAGGCTTTGCTGT+CGG 0.627107 1.4:-78627028 None:intergenic
GGGATAGTGATTGATGCGAA+GGG 0.627894 1.4:+78627352 MS.gene41406:CDS
GAAGCCGTTCCTCGCCTCGT+CGG 0.628152 1.4:-78626922 None:intergenic
GGAGAACATGCAGTTAACAA+AGG 0.636251 1.4:+78627147 MS.gene41406:CDS
CTCGCCGTCAAATTCTCCGG+CGG 0.636913 1.4:+78627093 MS.gene41406:CDS
CCTGAATCATTCTGTTCATG+TGG 0.637037 1.4:+78627420 MS.gene41406:CDS
AGGGAGCGAGAGGAGAAGGA+CGG 0.652383 1.4:+78627371 MS.gene41406:CDS
GTGAAAAGAGGAAAATGTTG+CGG 0.654247 1.4:+78627476 MS.gene41406:CDS
TGGTGACGATTTCATCAACA+AGG 0.656213 1.4:-78626624 None:intergenic
AGGAAAAGAATGTTGCTCAA+CGG 0.662127 1.4:+78627255 MS.gene41406:CDS
AATCGTTTCAGCATCGCCGG+CGG 0.666535 1.4:+78626967 MS.gene41406:CDS
GTCTTGGTGAGAAACGGCGT+CGG 0.667306 1.4:-78626595 None:intergenic
ACGGTGTATTGAGGATGATG+TGG 0.668550 1.4:+78627390 MS.gene41406:CDS
TCGCCGTTATGTTCCACCGA+CGG 0.686749 1.4:-78626556 None:intergenic
TCTAATGAATCTTTCCGACG+AGG 0.711943 1.4:+78626908 MS.gene41406:CDS
CGGCACGACTGTAACAAAAG+CGG 0.729434 1.4:+78627003 MS.gene41406:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTCTGTTAATTT+TGG + chr1.4:78626839-78626858 MS.gene41406:intron 10.0%
!! TTGTTGTGCTTAAAATATTT+AGG - chr1.4:78626727-78626746 None:intergenic 20.0%
!!! GTTAATTTTGGTTATTTTCA+GGG + chr1.4:78626851-78626870 MS.gene41406:intron 20.0%
!!! TGTTAATTTTGGTTATTTTC+AGG + chr1.4:78626850-78626869 MS.gene41406:intron 20.0%
! TTAAAAAAGTTGTACCTGAT+CGG + chr1.4:78626876-78626895 MS.gene41406:CDS 25.0%
!!! GAATTACATAAGTATTGAGT+TGG - chr1.4:78626768-78626787 None:intergenic 25.0%
GAATTACGCAAATTCTCAAA+CGG + chr1.4:78627219-78627238 MS.gene41406:CDS 30.0%
AGGAAAAGAATGTTGCTCAA+CGG + chr1.4:78627255-78627274 MS.gene41406:CDS 35.0%
ATCAACAAGGTGATATGTCT+TGG - chr1.4:78626614-78626633 None:intergenic 35.0%
GCAGTTAACAAAGGAAATAG+AGG + chr1.4:78627156-78627175 MS.gene41406:CDS 35.0%
GTGAAAAGAGGAAAATGTTG+CGG + chr1.4:78627476-78627495 MS.gene41406:CDS 35.0%
TGATATGTCTTGGTGAGAAA+CGG - chr1.4:78626604-78626623 None:intergenic 35.0%
AAAAAGTTGTACCTGATCGG+TGG + chr1.4:78626879-78626898 MS.gene41406:CDS 40.0%
AAAAGTTGTACCTGATCGGT+GGG + chr1.4:78626880-78626899 MS.gene41406:CDS 40.0%
AAGCAAATCCCTAGCGAAAA+CGG - chr1.4:78626704-78626723 None:intergenic 40.0%
AATCAGAGCCGTTTGATTCA+AGG + chr1.4:78627449-78627468 MS.gene41406:CDS 40.0%
ATAGAAACCCGAAGCTGTTT+GGG + chr1.4:78627332-78627351 MS.gene41406:CDS 40.0%
ATCACTATCCCAAACAGCTT+CGG - chr1.4:78627343-78627362 None:intergenic 40.0%
ATTCAAGGAAGGGTGAAAAG+AGG + chr1.4:78627464-78627483 MS.gene41406:CDS 40.0%
ATTCCACGAAATCACATCGT+TGG - chr1.4:78626647-78626666 None:intergenic 40.0%
CCACATGAACAGAATGATTC+AGG - chr1.4:78627423-78627442 None:intergenic 40.0%
CCTGAATCATTCTGTTCATG+TGG + chr1.4:78627420-78627439 MS.gene41406:CDS 40.0%
GGAGAACATGCAGTTAACAA+AGG + chr1.4:78627147-78627166 MS.gene41406:CDS 40.0%
GTGATTTCGTGGAATGAAAC+TGG + chr1.4:78626652-78626671 MS.gene41406:CDS 40.0%
TACGCAAATTCTCAAACGGA+AGG + chr1.4:78627223-78627242 MS.gene41406:CDS 40.0%
TCACCCTTCCTTGAATCAAA+CGG - chr1.4:78627460-78627479 None:intergenic 40.0%
TCTAATGAATCTTTCCGACG+AGG + chr1.4:78626908-78626927 MS.gene41406:CDS 40.0%
TTCTCTGTGATATTCAGCGA+CGG + chr1.4:78626942-78626961 MS.gene41406:CDS 40.0%
! TGGTGACGATTTCATCAACA+AGG - chr1.4:78626627-78626646 None:intergenic 40.0%
AAATCCCTAGCGAAAACGGT+AGG - chr1.4:78626700-78626719 None:intergenic 45.0%
AATCCCTAGCGAAAACGGTA+GGG - chr1.4:78626699-78626718 None:intergenic 45.0%
ACGGTGTATTGAGGATGATG+TGG + chr1.4:78627390-78627409 MS.gene41406:CDS 45.0%
AGAGCCGTTTGATTCAAGGA+AGG + chr1.4:78627453-78627472 MS.gene41406:CDS 45.0%
CGAGAATGAGAGGTTGAGAA+AGG + chr1.4:78627126-78627145 MS.gene41406:CDS 45.0%
CTGGAACAACGTTCATCGTT+TGG + chr1.4:78626671-78626690 MS.gene41406:CDS 45.0%
GAAAATCGTTTCAGCATCGC+CGG + chr1.4:78626964-78626983 MS.gene41406:CDS 45.0%
GAGCCGTTTGATTCAAGGAA+GGG + chr1.4:78627454-78627473 MS.gene41406:CDS 45.0%
GATAGAAACCCGAAGCTGTT+TGG + chr1.4:78627331-78627350 MS.gene41406:CDS 45.0%
GCAAATTCTCAAACGGAAGG+CGG + chr1.4:78627226-78627245 MS.gene41406:CDS 45.0%
GGGATAGTGATTGATGCGAA+GGG + chr1.4:78627352-78627371 MS.gene41406:CDS 45.0%
TCACCAACGATGTGATTTCG+TGG + chr1.4:78626641-78626660 MS.gene41406:CDS 45.0%
TCACTATCCCAAACAGCTTC+GGG - chr1.4:78627342-78627361 None:intergenic 45.0%
TGGGATAGTGATTGATGCGA+AGG + chr1.4:78627351-78627370 MS.gene41406:CDS 45.0%
TTAGAGAATTCCCACCGATC+AGG - chr1.4:78626893-78626912 None:intergenic 45.0%
! TTCGTTTGTTACCGGAGAAG+CGG + chr1.4:78627296-78627315 MS.gene41406:CDS 45.0%
AGGAGAAGGACGGTGTATTG+AGG + chr1.4:78627381-78627400 MS.gene41406:CDS 50.0%
CGCTACTAGACGAGAATGAG+AGG + chr1.4:78627116-78627135 MS.gene41406:CDS 50.0%
CGGCACGACTGTAACAAAAG+CGG + chr1.4:78627003-78627022 MS.gene41406:CDS 50.0%
TGCTCCTCCCCTGAAATTGA+CGG - chr1.4:78627055-78627074 None:intergenic 50.0%
TTCCTCGCCGTCAAATTCTC+CGG + chr1.4:78627090-78627109 MS.gene41406:CDS 50.0%
! AACAAACGAAGCGTCTGCAC+CGG - chr1.4:78627286-78627305 None:intergenic 50.0%
! CGCTTTTGTTACAGTCGTGC+CGG - chr1.4:78627005-78627024 None:intergenic 50.0%
! GAACCCTACCGTTTTCGCTA+GGG + chr1.4:78626693-78626712 MS.gene41406:CDS 50.0%
! GCAGACGCTTCGTTTGTTAC+CGG + chr1.4:78627288-78627307 MS.gene41406:CDS 50.0%
! TCGTTTGTTACCGGAGAAGC+GGG + chr1.4:78627297-78627316 MS.gene41406:CDS 50.0%
AATCGTTTCAGCATCGCCGG+CGG + chr1.4:78626967-78626986 MS.gene41406:CDS 55.0%
ATCGCGTCGCCGTCAATTTC+AGG + chr1.4:78627043-78627062 MS.gene41406:CDS 55.0%
ATTGATGCGAAGGGAGCGAG+AGG + chr1.4:78627361-78627380 MS.gene41406:CDS 55.0%
GAAATTGACGGCGACGCGAT+AGG - chr1.4:78627043-78627062 None:intergenic 55.0%
GCTCCGTCGGTGGAACATAA+CGG + chr1.4:78626553-78626572 MS.gene41406:CDS 55.0%
GTCAATTTCAGGGGAGGAGC+AGG + chr1.4:78627054-78627073 MS.gene41406:CDS 55.0%
GTCTTGGTGAGAAACGGCGT+CGG - chr1.4:78626598-78626617 None:intergenic 55.0%
TCGCCGTTATGTTCCACCGA+CGG - chr1.4:78626559-78626578 None:intergenic 55.0%
TCGCGTCGCCGTCAATTTCA+GGG + chr1.4:78627044-78627063 MS.gene41406:CDS 55.0%
TGAATCTTTCCGACGAGGCG+AGG + chr1.4:78626913-78626932 MS.gene41406:CDS 55.0%
TTCTCAAACGGAAGGCGGTG+CGG + chr1.4:78627231-78627250 MS.gene41406:CDS 55.0%
TTTGTTACCGGAGAAGCGGG+CGG + chr1.4:78627300-78627319 MS.gene41406:CDS 55.0%
! GACGCGATAGGCTTTGCTGT+CGG - chr1.4:78627031-78627050 None:intergenic 55.0%
! GGAACCCTACCGTTTTCGCT+AGG + chr1.4:78626692-78626711 MS.gene41406:CDS 55.0%
! TGTTACAGTCGTGCCGGCAT+TGG - chr1.4:78626999-78627018 None:intergenic 55.0%
AGCGCCGCCGGAGAATTTGA+CGG - chr1.4:78627100-78627119 None:intergenic 60.0%
AGGGAGCGAGAGGAGAAGGA+CGG + chr1.4:78627371-78627390 MS.gene41406:CDS 60.0%
ATGTTGCTCAACGGCGTCGC+CGG + chr1.4:78627264-78627283 MS.gene41406:CDS 60.0%
CGCGTCGCCGTCAATTTCAG+GGG + chr1.4:78627045-78627064 MS.gene41406:CDS 60.0%
CTCGCCGTCAAATTCTCCGG+CGG + chr1.4:78627093-78627112 MS.gene41406:CDS 60.0%
CTTTCCGACGAGGCGAGGAA+CGG + chr1.4:78626918-78626937 MS.gene41406:CDS 60.0%
GTCGCCGTCAATTTCAGGGG+AGG + chr1.4:78627048-78627067 MS.gene41406:CDS 60.0%
TTCTCGTCTAGTAGCGCCGC+CGG - chr1.4:78627112-78627131 None:intergenic 60.0%
CAAACGGAAGGCGGTGCGGA+AGG + chr1.4:78627235-78627254 MS.gene41406:CDS 65.0%
CGCCGGAGAATTTGACGGCG+AGG - chr1.4:78627095-78627114 None:intergenic 65.0%
GAAGCCGTTCCTCGCCTCGT+CGG - chr1.4:78626925-78626944 None:intergenic 65.0%
GCGAAGGGAGCGAGAGGAGA+AGG + chr1.4:78627367-78627386 MS.gene41406:CDS 65.0%
! GGTGAGAAACGGCGTCGGAG+TGG - chr1.4:78626593-78626612 None:intergenic 65.0%
CCGGCGGCAGCTTCCAATGC+CGG + chr1.4:78626983-78627002 MS.gene41406:CDS 70.0%
GTTACCGGAGAAGCGGGCGG+CGG + chr1.4:78627303-78627322 MS.gene41406:CDS 70.0%
! CCGGCATTGGAAGCTGCCGC+CGG - chr1.4:78626986-78627005 None:intergenic 70.0%
TCCACCGCCGCCCGCTTCTC+CGG - chr1.4:78627310-78627329 None:intergenic 75.0%
! ACCGGAGAAGCGGGCGGCGG+TGG + chr1.4:78627306-78627325 MS.gene41406:CDS 80.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 78626550 78627540 78626550 ID=MS.gene41406
chr1.4 mRNA 78626550 78627540 78626550 ID=MS.gene41406.t1;Parent=MS.gene41406
chr1.4 exon 78626550 78626780 78626550 ID=MS.gene41406.t1.exon1;Parent=MS.gene41406.t1
chr1.4 CDS 78626550 78626780 78626550 ID=cds.MS.gene41406.t1;Parent=MS.gene41406.t1
chr1.4 exon 78626872 78627540 78626872 ID=MS.gene41406.t1.exon2;Parent=MS.gene41406.t1
chr1.4 CDS 78626872 78627540 78626872 ID=cds.MS.gene41406.t1;Parent=MS.gene41406.t1
Gene Sequence

>MS.gene41406

ATGGCTCCGTCGGTGGAACATAACGGCGAGTCTCAAAGATCCACTCCGACGCCGTTTCTCACCAAGACATATCACCTTGTTGATGAAATCGTCACCAACGATGTGATTTCGTGGAATGAAACTGGAACAACGTTCATCGTTTGGAACCCTACCGTTTTCGCTAGGGATTTGCTTCCTAAATATTTTAAGCACAACAATTTCTCTAGCTTCGTTCGCCAACTCAATACTTATGTAATTCACTCATCATCATCGAAGCTATTTGATTTTTTTATTTTTTTATTTGAATTTATTTTTTATTTCTGTTAATTTTGGTTATTTTCAGGGATTTAAAAAAGTTGTACCTGATCGGTGGGAATTCTCTAATGAATCTTTCCGACGAGGCGAGGAACGGCTTCTCTGTGATATTCAGCGACGGAAAATCGTTTCAGCATCGCCGGCGGCAGCTTCCAATGCCGGCACGACTGTAACAAAAGCGGTTCCGACAGCAAAGCCTATCGCGTCGCCGTCAATTTCAGGGGAGGAGCAGGTGATTTCTTCGAATTCCTCGCCGTCAAATTCTCCGGCGGCGCTACTAGACGAGAATGAGAGGTTGAGAAAGGAGAACATGCAGTTAACAAAGGAAATAGAGGACATGAAATCGCTTTACAACAATATATTCAATCTTCTGTCGAATTACGCAAATTCTCAAACGGAAGGCGGTGCGGAAGGAAAAGAATGTTGCTCAACGGCGTCGCCGGTGCAGACGCTTCGTTTGTTACCGGAGAAGCGGGCGGCGGTGGAAGATAGAAACCCGAAGCTGTTTGGGATAGTGATTGATGCGAAGGGAGCGAGAGGAGAAGGACGGTGTATTGAGGATGATGTGGTGTTGAGCCTGAATCATTCTGTTCATGTGGACGTGAAATCAGAGCCGTTTGATTCAAGGAAGGGTGAAAAGAGGAAAATGTTGCGGCTAAATCAGTGCTATAGAGCGAATCAGAGTGCGTGTAATTGA
Protein sequence

>MS.gene41406.t1

MAPSVEHNGESQRSTPTPFLTKTYHLVDEIVTNDVISWNETGTTFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDRWEFSNESFRRGEERLLCDIQRRKIVSASPAAASNAGTTVTKAVPTAKPIASPSISGEEQVISSNSSPSNSPAALLDENERLRKENMQLTKEIEDMKSLYNNIFNLLSNYANSQTEGGAEGKECCSTASPVQTLRLLPEKRAAVEDRNPKLFGIVIDAKGARGEGRCIEDDVVLSLNHSVHVDVKSEPFDSRKGEKRKMLRLNQCYRANQSACN