AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41421

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41421.t1 MTR_1g100667 96.691 272 7 1 1 270 1 272 0.0 550
MS.gene41421.t1 MTR_6g055910 60.544 294 81 5 1 270 1 283 6.86e-118 339
MS.gene41421.t1 MTR_6g055910 56.972 251 74 4 43 270 15 254 9.34e-90 266
MS.gene41421.t1 MTR_6g055910 52.915 223 71 4 71 270 2 213 1.95e-68 211
MS.gene41421.t1 MTR_1g085040 71.074 121 34 1 10 129 9 129 7.74e-56 184
MS.gene41421.t1 MTR_1g112760 69.748 119 35 1 10 127 10 128 4.38e-54 175
MS.gene41421.t1 MTR_7g110830 57.516 153 64 1 10 161 9 161 5.73e-54 179
MS.gene41421.t1 MTR_3g077110 69.421 121 36 1 10 129 9 129 6.66e-54 178
MS.gene41421.t1 MTR_4g105130 60.993 141 51 2 10 146 9 149 1.16e-53 178
MS.gene41421.t1 MTR_1g085640 69.748 119 35 1 10 127 9 127 2.92e-53 177
MS.gene41421.t1 MTR_4g065017 56.291 151 49 1 9 159 13 146 1.80e-52 174
MS.gene41421.t1 MTR_7g111290 64.493 138 43 2 10 146 9 141 1.90e-52 175
MS.gene41421.t1 MTR_8g098860 66.667 108 36 0 12 119 11 118 1.26e-51 171
MS.gene41421.t1 MTR_8g017440 69.725 109 33 0 10 118 9 117 3.08e-51 171
MS.gene41421.t1 MTR_2g064160 50.888 169 78 3 9 172 7 175 3.18e-51 170
MS.gene41421.t1 MTR_2g099740 70.370 108 32 0 10 117 9 116 3.37e-51 172
MS.gene41421.t1 MTR_2g097910 71.154 104 30 0 14 117 21 124 3.68e-51 170
MS.gene41421.t1 MTR_8g017540 69.444 108 33 0 10 117 55 162 2.08e-50 170
MS.gene41421.t1 MTR_8g017500 67.593 108 35 0 10 117 9 116 8.38e-50 167
MS.gene41421.t1 MTR_3g028740 70.370 108 32 0 10 117 19 126 1.24e-49 167
MS.gene41421.t1 MTR_1g100653 64.815 108 38 0 14 121 13 120 2.22e-49 165
MS.gene41421.t1 MTR_6g012690 68.868 106 33 0 14 119 13 118 3.47e-49 166
MS.gene41421.t1 MTR_3g097450 48.428 159 77 3 1 155 1 158 8.39e-49 163
MS.gene41421.t1 MTR_5g010020 68.317 101 32 0 12 112 11 111 9.20e-49 164
MS.gene41421.t1 MTR_7g011170 63.866 119 42 1 1 119 1 118 4.42e-48 162
MS.gene41421.t1 MTR_7g115650 61.017 118 46 0 14 131 13 130 5.05e-48 159
MS.gene41421.t1 MTR_3g074520 66.038 106 36 0 14 119 13 118 9.81e-48 162
MS.gene41421.t1 MTR_2g011660 60.504 119 47 0 1 119 1 119 1.11e-47 162
MS.gene41421.t1 MTR_8g095390 59.829 117 46 1 15 130 14 130 1.39e-47 160
MS.gene41421.t1 MTR_4g082230 56.835 139 58 2 1 138 1 138 4.01e-47 162
MS.gene41421.t1 MTR_4g082290 60.317 126 49 1 14 138 13 138 5.11e-47 162
MS.gene41421.t1 MTR_4g478180 52.778 144 61 2 14 156 14 151 5.25e-47 160
MS.gene41421.t1 MTR_4g073420 37.692 260 143 7 1 246 1 255 5.77e-47 158
MS.gene41421.t1 MTR_4g091490 59.664 119 48 0 1 119 1 119 1.45e-46 159
MS.gene41421.t1 MTR_8g017390 61.983 121 45 1 10 129 9 129 3.35e-46 161
MS.gene41421.t1 MTR_5g029840 60.870 115 44 1 14 127 13 127 4.45e-46 157
MS.gene41421.t1 MTR_1g043080 39.189 222 117 5 14 219 13 232 1.09e-45 154
MS.gene41421.t1 MTR_1g076150 65.385 104 36 0 14 117 13 116 1.30e-45 154
MS.gene41421.t1 MTR_5g079670 54.331 127 52 2 15 136 13 138 2.20e-45 152
MS.gene41421.t1 MTR_5g007370 45.402 174 83 3 14 181 13 180 2.71e-45 154
MS.gene41421.t1 MTR_5g078140 52.482 141 65 2 1 140 1 140 8.29e-45 154
MS.gene41421.t1 MTR_8g017340 64.545 110 38 1 9 117 8 117 8.59e-45 157
MS.gene41421.t1 MTR_8g017350 64.545 110 38 1 9 117 8 117 3.25e-44 158
MS.gene41421.t1 MTR_2g089620 59.167 120 48 1 1 120 1 119 5.91e-44 152
MS.gene41421.t1 MTR_2g089450 61.321 106 41 0 14 119 13 118 7.42e-44 149
MS.gene41421.t1 MTR_4g485530 56.897 116 50 0 4 119 3 118 1.02e-43 147
MS.gene41421.t1 MTR_3g065440 54.887 133 58 2 1 132 1 132 1.81e-43 150
MS.gene41421.t1 MTR_4g121460 46.552 174 90 2 1 172 1 173 2.83e-43 150
MS.gene41421.t1 MTR_0251s0050 57.265 117 50 0 1 117 1 117 3.45e-43 148
MS.gene41421.t1 MTR_0063s0090 64.356 101 36 0 14 114 13 113 4.06e-43 146
MS.gene41421.t1 MTR_1g043050 58.407 113 47 0 14 126 13 125 4.79e-43 147
MS.gene41421.t1 MTR_7g010210 40.175 229 98 7 14 205 13 239 9.76e-43 148
MS.gene41421.t1 MTR_3g461490 50.365 137 67 1 14 149 13 149 3.01e-42 147
MS.gene41421.t1 MTR_7g010210 58.879 107 44 0 14 120 13 119 3.77e-42 145
MS.gene41421.t1 MTR_8g031360 52.713 129 59 2 1 127 1 129 6.03e-42 145
MS.gene41421.t1 MTR_7g096930 60.577 104 41 0 14 117 13 116 7.93e-42 145
MS.gene41421.t1 MTR_0008s0390 55.556 117 52 0 1 117 1 117 8.08e-42 144
MS.gene41421.t1 MTR_4g102380 56.303 119 51 1 1 119 1 118 8.08e-42 144
MS.gene41421.t1 MTR_7g035075 54.237 118 54 0 11 128 12 129 9.65e-42 142
MS.gene41421.t1 MTR_0008s0470 60.577 104 41 0 14 117 14 117 1.32e-41 144
MS.gene41421.t1 MTR_6g009430 53.488 129 56 3 1 127 1 127 1.64e-41 145
MS.gene41421.t1 MTR_2g034790 50.980 153 67 4 1 147 1 151 3.68e-41 144
MS.gene41421.t1 MTR_1g017000 44.231 156 78 4 1 155 1 148 3.70e-41 142
MS.gene41421.t1 MTR_2g067420 62.136 103 39 0 10 112 11 113 5.31e-41 144
MS.gene41421.t1 MTR_7g076740 56.780 118 49 2 1 117 1 117 6.32e-41 143
MS.gene41421.t1 MTR_2g089420 46.012 163 76 2 14 168 12 170 7.89e-41 146
MS.gene41421.t1 MTR_1g073170 57.391 115 47 1 2 116 11 123 8.54e-41 141
MS.gene41421.t1 MTR_1g045610 61.538 104 40 0 14 117 22 125 9.97e-41 141
MS.gene41421.t1 MTR_0008s0280 61.765 102 39 0 14 115 13 114 2.11e-40 140
MS.gene41421.t1 MTR_7g102110 49.664 149 69 4 1 145 1 147 2.18e-40 141
MS.gene41421.t1 MTR_3g083540 53.846 117 53 1 14 129 42 158 2.38e-40 142
MS.gene41421.t1 MTR_1g017140 36.323 223 115 4 14 225 13 219 2.52e-40 142
MS.gene41421.t1 MTR_3g039990 53.782 119 55 0 1 119 1 119 3.59e-40 141
MS.gene41421.t1 MTR_4g125520 44.633 177 80 4 1 173 1 163 7.09e-40 140
MS.gene41421.t1 MTR_1g110460 56.250 112 48 1 14 125 27 137 9.52e-40 140
MS.gene41421.t1 MTR_7g087130 44.578 166 85 2 14 172 13 178 1.08e-39 141
MS.gene41421.t1 MTR_6g006030 52.033 123 58 1 11 133 12 133 1.97e-39 136
MS.gene41421.t1 MTR_4g100720 45.283 159 81 2 9 161 9 167 2.19e-39 135
MS.gene41421.t1 MTR_0140s0030 57.547 106 45 0 14 119 14 119 2.46e-39 140
MS.gene41421.t1 MTR_0489s0020 57.547 106 45 0 14 119 14 119 2.46e-39 140
MS.gene41421.t1 MTR_1g086510 55.556 117 52 0 14 130 22 138 2.58e-39 138
MS.gene41421.t1 MTR_8g020490 59.048 105 43 0 15 119 10 114 2.68e-39 137
MS.gene41421.t1 MTR_8g027345 53.782 119 54 1 1 119 1 118 2.78e-39 139
MS.gene41421.t1 MTR_4g057635 55.906 127 51 4 1 125 1 124 3.21e-39 139
MS.gene41421.t1 MTR_2g095520 53.285 137 62 2 1 136 1 136 4.16e-39 139
MS.gene41421.t1 MTR_5g014990 43.750 160 72 3 1 143 1 159 4.85e-39 138
MS.gene41421.t1 MTR_5g042030 54.783 115 51 1 14 127 8 122 7.34e-39 137
MS.gene41421.t1 MTR_6g012180 59.596 99 40 0 14 112 13 111 8.09e-39 138
MS.gene41421.t1 MTR_7g117730 50.806 124 60 1 1 124 1 123 9.94e-39 136
MS.gene41421.t1 MTR_6g090405 46.622 148 76 3 1 146 1 147 2.50e-38 135
MS.gene41421.t1 MTR_0197s0010 41.935 155 86 1 18 168 6 160 4.78e-38 134
MS.gene41421.t1 MTR_3g103570 54.237 118 52 2 1 117 1 117 5.87e-38 136
MS.gene41421.t1 MTR_1g086530 53.043 115 53 1 14 128 34 147 6.35e-38 135
MS.gene41421.t1 MTR_1g062940 57.692 104 44 0 14 117 7 110 2.66e-37 131
MS.gene41421.t1 MTR_8g042410 40.000 205 102 6 14 210 38 229 9.57e-37 137
MS.gene41421.t1 MTR_3g052450 44.966 149 74 1 14 162 41 181 1.41e-36 136
MS.gene41421.t1 MTR_5g078800 55.357 112 49 1 6 117 1 111 1.53e-36 130
MS.gene41421.t1 MTR_0247s0040 57.426 101 43 0 14 114 8 108 1.75e-36 128
MS.gene41421.t1 MTR_0193s0090 50.435 115 57 0 14 128 8 122 4.72e-36 128
MS.gene41421.t1 MTR_4g097570 55.856 111 47 2 1 110 1 110 7.64e-36 129
MS.gene41421.t1 MTR_4g063100 52.830 106 50 0 14 119 8 113 7.70e-36 129
MS.gene41421.t1 MTR_3g052430 52.679 112 53 0 14 125 42 153 9.66e-36 134
MS.gene41421.t1 MTR_5g078910 53.097 113 52 1 6 118 1 112 1.10e-35 129
MS.gene41421.t1 MTR_5g079290 54.286 105 48 0 14 118 18 122 1.34e-35 128
MS.gene41421.t1 MTR_5g079220 52.632 114 53 1 6 118 13 126 1.50e-35 128
MS.gene41421.t1 MTR_3g011610 51.818 110 53 0 14 123 38 147 2.67e-35 132
MS.gene41421.t1 MTR_7g017260 51.261 119 56 1 14 130 26 144 5.88e-35 127
MS.gene41421.t1 MTR_5g078860 55.769 104 46 0 14 117 8 111 6.79e-35 127
MS.gene41421.t1 MTR_2g033170 52.101 119 57 0 14 132 25 143 7.59e-35 128
MS.gene41421.t1 MTR_2g096380 52.885 104 49 0 14 117 7 110 1.53e-34 125
MS.gene41421.t1 MTR_7g109320 56.410 117 50 1 1 117 1 116 1.58e-34 127
MS.gene41421.t1 MTR_4g097570 55.357 112 47 3 1 110 1 111 2.62e-34 125
MS.gene41421.t1 MTR_0001s0360 55.238 105 47 0 14 118 8 112 2.72e-34 124
MS.gene41421.t1 MTR_4g128670 52.679 112 51 2 1 111 1 111 3.28e-34 127
MS.gene41421.t1 MTR_8g060940 56.000 100 44 0 14 113 8 107 3.84e-34 124
MS.gene41421.t1 MTR_4g123040 52.542 118 54 2 14 130 25 141 7.08e-34 125
MS.gene41421.t1 MTR_5g079120 50.962 104 51 0 14 117 62 165 7.72e-34 125
MS.gene41421.t1 MTR_1g021230 54.369 103 47 0 14 116 58 160 1.79e-33 126
MS.gene41421.t1 MTR_5g078950 53.465 101 47 0 14 114 8 108 6.10e-33 121
MS.gene41421.t1 MTR_2g088170 53.636 110 51 0 14 123 30 139 7.17e-33 125
MS.gene41421.t1 MTR_5g078930 52.727 110 51 1 14 122 10 119 7.34e-33 120
MS.gene41421.t1 MTR_8g006470 52.294 109 50 2 14 121 11 118 2.34e-32 120
MS.gene41421.t1 MTR_1g083630 49.107 112 57 0 12 123 11 122 6.10e-31 121
MS.gene41421.t1 MTR_7g111290 58.252 103 37 2 45 146 2 99 1.90e-30 116
MS.gene41421.t1 MTR_3g045430 44.444 117 64 1 14 129 14 130 5.47e-30 114
MS.gene41421.t1 MTR_4g029540 52.427 103 48 1 14 115 11 113 6.68e-30 114
MS.gene41421.t1 MTR_5g088610 51.456 103 49 1 14 115 10 112 7.36e-30 115
MS.gene41421.t1 MTR_5g062790 36.207 174 91 4 14 185 10 165 7.49e-30 114
MS.gene41421.t1 MTR_4g063100 61.333 75 29 0 45 119 10 84 5.00e-29 110
MS.gene41421.t1 MTR_5g016510 48.598 107 54 1 15 121 5 110 1.22e-28 111
MS.gene41421.t1 MTR_5g088080 48.544 103 52 1 14 115 13 115 1.34e-28 110
MS.gene41421.t1 MTR_5g088150 48.544 103 52 1 14 115 13 115 1.34e-28 110
MS.gene41421.t1 MTR_5g488210 48.544 103 52 1 14 115 13 115 1.34e-28 110
MS.gene41421.t1 MTR_5g088640 48.544 103 52 1 14 115 13 115 1.69e-28 110
MS.gene41421.t1 MTR_5g488170 48.544 103 52 1 14 115 13 115 3.32e-28 108
MS.gene41421.t1 MTR_2g096380 61.644 73 28 0 45 117 19 91 3.87e-28 107
MS.gene41421.t1 MTR_4g019370 46.018 113 60 1 15 127 38 149 1.61e-27 108
MS.gene41421.t1 MTR_5g007300 63.158 76 28 0 14 89 65 140 1.67e-27 103
MS.gene41421.t1 MTR_3g101290 50.000 106 48 2 15 118 37 139 3.42e-27 105
MS.gene41421.t1 MTR_6g027340 48.624 109 51 3 9 116 12 116 4.04e-27 104
MS.gene41421.t1 MTR_6g015455 40.260 154 90 2 15 167 5 157 5.50e-27 110
MS.gene41421.t1 MTR_3g089045 35.519 183 107 4 15 189 16 195 5.99e-27 106
MS.gene41421.t1 MTR_6g027360 48.113 106 52 2 12 116 75 178 2.36e-26 105
MS.gene41421.t1 MTR_6g074860 46.078 102 52 2 15 115 4 103 2.45e-26 103
MS.gene41421.t1 MTR_4g094982 47.115 104 54 1 15 118 5 107 7.26e-26 103
MS.gene41421.t1 MTR_5g049190 43.810 105 58 1 15 119 19 122 1.32e-24 99.0
MS.gene41421.t1 MTR_4g082040 44.118 102 56 1 15 116 105 205 2.57e-24 101
MS.gene41421.t1 MTR_5g041570 36.301 146 78 3 12 143 131 275 4.37e-24 100
MS.gene41421.t1 MTR_7g061330 44.860 107 58 1 11 117 109 214 1.37e-23 100
MS.gene41421.t1 MTR_7g061330 32.231 121 71 3 9 119 46 165 1.36e-11 64.7
MS.gene41421.t1 MTR_7g461410 44.860 107 58 1 11 117 109 214 1.37e-23 100
MS.gene41421.t1 MTR_7g461410 32.231 121 71 3 9 119 46 165 1.36e-11 64.7
MS.gene41421.t1 MTR_7g061330 44.860 107 58 1 11 117 73 178 2.33e-23 99.4
MS.gene41421.t1 MTR_7g061330 33.628 113 72 3 9 119 18 129 4.04e-11 63.2
MS.gene41421.t1 MTR_4g128190 40.000 135 61 4 14 142 12 132 2.59e-23 95.5
MS.gene41421.t1 MTR_3g463400 40.952 105 61 1 15 119 133 236 8.63e-23 97.4
MS.gene41421.t1 MTR_6g027370 40.351 114 67 1 15 128 99 211 1.23e-22 95.9
MS.gene41421.t1 MTR_1g085880 49.541 109 53 2 9 115 7 115 1.88e-22 92.0
MS.gene41421.t1 MTR_5g070020 35.246 122 78 1 15 136 122 242 4.55e-22 94.4
MS.gene41421.t1 MTR_7g086960 46.602 103 52 2 15 116 89 189 4.75e-22 94.4
MS.gene41421.t1 MTR_1g085770 49.541 109 53 2 9 115 7 115 1.10e-21 92.4
MS.gene41421.t1 MTR_3g110028 37.500 120 74 1 11 130 81 199 1.12e-21 94.7
MS.gene41421.t1 MTR_3g110028 38.596 114 66 3 9 119 25 137 2.34e-16 79.0
MS.gene41421.t1 MTR_4g105660 40.000 105 62 1 15 119 180 283 1.25e-21 94.0
MS.gene41421.t1 MTR_1g026870 37.705 122 75 1 11 132 81 201 3.87e-21 93.2
MS.gene41421.t1 MTR_1g026870 35.965 114 69 3 9 119 25 137 4.62e-15 75.5
MS.gene41421.t1 MTR_1g057980 41.509 106 61 1 6 111 71 175 4.26e-21 90.5
MS.gene41421.t1 MTR_7g037260 32.680 153 81 3 15 151 145 291 5.92e-21 91.3
MS.gene41421.t1 MTR_3g077650 39.286 112 67 1 8 119 174 284 8.49e-21 91.7
MS.gene41421.t1 MTR_5g082910 44.444 99 54 1 15 113 19 116 2.61e-20 88.2
MS.gene41421.t1 MTR_7g451170 35.965 114 72 1 6 119 182 294 1.23e-19 87.8
MS.gene41421.t1 MTR_7g035350 42.268 97 55 1 15 111 225 320 1.51e-19 87.8
MS.gene41421.t1 MTR_7g061550 38.000 100 60 1 18 115 10 109 9.21e-19 85.1
MS.gene41421.t1 MTR_5g010650 43.011 93 52 1 18 110 113 204 2.53e-18 84.3
MS.gene41421.t1 MTR_0023s0210 48.684 76 39 0 14 89 8 83 2.76e-18 77.8
MS.gene41421.t1 MTR_4g088015 36.697 109 68 1 11 119 217 324 6.82e-18 83.2
MS.gene41421.t1 MTR_8g468380 32.000 125 84 1 18 142 25 148 7.03e-17 80.1
MS.gene41421.t1 MTR_5g038910 35.714 112 70 2 7 117 17 127 3.91e-16 78.2
MS.gene41421.t1 MTR_5g038910 34.109 129 82 3 7 134 17 143 5.02e-16 77.4
MS.gene41421.t1 MTR_7g450950 35.052 97 62 1 15 111 157 252 5.77e-16 77.0
MS.gene41421.t1 MTR_7g037130 36.792 106 64 2 15 120 145 247 6.50e-16 77.0
MS.gene41421.t1 MTR_8g017480 68.182 44 14 0 10 53 9 52 2.37e-13 63.5
MS.gene41421.t1 MTR_4g063100 53.061 49 23 0 71 119 1 49 1.89e-12 64.7
MS.gene41421.t1 MTR_2g096380 55.814 43 19 0 75 117 5 47 9.86e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41421.t1 AT4G25560 55.155 194 66 3 6 178 1 194 1.35e-62 198
MS.gene41421.t1 AT5G52260 57.068 191 66 4 7 181 6 196 2.04e-62 197
MS.gene41421.t1 AT3G48920 53.886 193 80 4 8 196 13 200 8.56e-62 196
MS.gene41421.t1 AT5G26660 70.588 119 34 1 10 127 9 127 1.31e-54 180
MS.gene41421.t1 AT1G57560 50.262 191 78 4 10 195 9 187 2.95e-54 178
MS.gene41421.t1 AT1G57560 59.060 149 56 2 10 157 9 153 6.02e-54 176
MS.gene41421.t1 AT4G01680 64.341 129 45 1 10 137 9 137 7.16e-54 175
MS.gene41421.t1 AT4G01680 64.341 129 45 1 10 137 9 137 4.96e-53 176
MS.gene41421.t1 AT1G09540 64.341 129 45 1 10 137 9 137 2.29e-52 174
MS.gene41421.t1 AT1G63910 58.647 133 52 1 12 144 11 140 8.43e-52 173
MS.gene41421.t1 AT3G13890 70.370 108 32 0 10 117 9 116 1.63e-51 172
MS.gene41421.t1 AT5G12870 69.444 108 33 0 12 119 17 124 2.48e-50 167
MS.gene41421.t1 AT3G12720 62.069 116 43 1 12 126 21 136 4.99e-50 167
MS.gene41421.t1 AT3G08500 70.370 108 32 0 10 117 27 134 5.23e-50 168
MS.gene41421.t1 AT3G01140 56.291 151 63 3 1 149 1 150 6.45e-50 167
MS.gene41421.t1 AT3G01140 58.696 138 55 2 14 149 56 193 1.36e-49 168
MS.gene41421.t1 AT4G01680 58.865 141 45 2 10 137 9 149 1.58e-49 167
MS.gene41421.t1 AT5G65230 69.811 106 32 0 14 119 13 118 1.74e-49 166
MS.gene41421.t1 AT5G15310 68.868 106 33 0 14 119 13 118 1.22e-48 164
MS.gene41421.t1 AT5G15310 68.868 106 33 0 14 119 13 118 1.37e-48 161
MS.gene41421.t1 AT4G05100 61.345 119 46 0 1 119 1 119 1.43e-48 164
MS.gene41421.t1 AT5G15310 68.868 106 33 0 14 119 13 118 1.58e-48 163
MS.gene41421.t1 AT4G34990 51.948 154 66 3 1 153 1 147 1.65e-48 162
MS.gene41421.t1 AT3G13890 64.957 117 32 1 10 117 9 125 2.35e-48 164
MS.gene41421.t1 AT4G38620 53.957 139 62 2 1 138 1 138 3.74e-48 161
MS.gene41421.t1 AT3G02940 64.151 106 38 0 14 119 13 118 6.20e-48 162
MS.gene41421.t1 AT3G02940 64.151 106 38 0 14 119 13 118 1.27e-47 161
MS.gene41421.t1 AT3G02940 64.151 106 38 0 14 119 13 118 1.27e-47 161
MS.gene41421.t1 AT1G79180 65.766 111 38 0 10 120 11 121 2.65e-47 159
MS.gene41421.t1 AT5G10280 59.664 119 47 1 1 119 1 118 3.21e-47 160
MS.gene41421.t1 AT5G54230 66.038 106 36 0 14 119 13 118 3.51e-47 160
MS.gene41421.t1 AT1G18570 52.206 136 64 1 5 139 5 140 3.78e-47 160
MS.gene41421.t1 AT1G22640 52.857 140 64 2 1 139 1 139 4.05e-47 158
MS.gene41421.t1 AT4G09460 52.555 137 63 2 1 136 1 136 1.00e-46 156
MS.gene41421.t1 AT1G34670 52.288 153 61 3 14 165 13 154 1.52e-46 159
MS.gene41421.t1 AT4G21440 63.208 106 39 0 14 119 13 118 7.72e-46 157
MS.gene41421.t1 AT1G74430 65.094 106 37 0 14 119 13 118 8.21e-46 155
MS.gene41421.t1 AT2G16720 54.015 137 61 2 1 136 1 136 8.66e-46 155
MS.gene41421.t1 AT3G23250 61.538 104 40 0 14 117 13 116 1.76e-45 154
MS.gene41421.t1 AT2G31180 59.504 121 48 1 1 121 1 120 1.90e-45 153
MS.gene41421.t1 AT5G16770 63.462 104 38 0 14 117 13 116 2.09e-45 155
MS.gene41421.t1 AT5G16770 63.462 104 38 0 14 117 13 116 2.09e-45 155
MS.gene41421.t1 AT5G16600 46.243 173 91 2 1 172 1 172 2.74e-45 155
MS.gene41421.t1 AT1G06180 54.074 135 61 1 1 135 1 134 2.81e-45 153
MS.gene41421.t1 AT3G12820 63.636 110 40 0 10 119 11 120 3.10e-45 152
MS.gene41421.t1 AT5G16770 62.264 106 40 0 14 119 13 118 3.25e-45 155
MS.gene41421.t1 AT5G16770 62.264 106 40 0 14 119 13 118 3.25e-45 155
MS.gene41421.t1 AT4G17785 59.829 117 47 0 1 117 1 117 6.95e-45 155
MS.gene41421.t1 AT4G17785 59.829 117 47 0 1 117 1 117 9.20e-45 155
MS.gene41421.t1 AT4G12350 49.664 149 71 3 1 147 1 147 1.32e-44 152
MS.gene41421.t1 AT4G28110 60.748 107 42 0 14 120 13 119 1.39e-44 152
MS.gene41421.t1 AT4G22680 48.734 158 79 2 1 157 1 157 1.40e-44 152
MS.gene41421.t1 AT5G60890 59.130 115 46 1 14 127 13 127 1.53e-44 152
MS.gene41421.t1 AT5G07690 57.851 121 50 1 14 133 13 133 1.57e-44 153
MS.gene41421.t1 AT5G61420 57.031 128 52 2 14 140 13 138 1.80e-44 154
MS.gene41421.t1 AT5G07700 49.367 158 74 4 14 169 13 166 6.15e-44 152
MS.gene41421.t1 AT5G07700 49.367 158 74 4 14 169 13 166 6.15e-44 152
MS.gene41421.t1 AT1G16490 63.303 109 40 0 10 118 11 119 6.24e-44 150
MS.gene41421.t1 AT5G35550 38.865 229 99 5 15 206 16 240 5.47e-43 147
MS.gene41421.t1 AT1G66230 51.449 138 65 2 1 137 1 137 7.17e-43 147
MS.gene41421.t1 AT1G56160 63.303 109 40 0 10 118 11 119 7.80e-43 148
MS.gene41421.t1 AT1G74080 48.299 147 74 2 14 158 13 159 1.19e-42 148
MS.gene41421.t1 AT5G23000 58.824 119 45 3 1 117 1 117 3.80e-42 147
MS.gene41421.t1 AT3G30210 50.993 151 68 1 14 158 28 178 4.34e-42 145
MS.gene41421.t1 AT1G35515 50.365 137 66 2 1 136 1 136 4.49e-42 144
MS.gene41421.t1 AT5G56110 50.365 137 67 1 14 149 13 149 5.20e-42 146
MS.gene41421.t1 AT3G01530 50.758 132 64 1 14 144 26 157 6.77e-42 143
MS.gene41421.t1 AT5G14340 50.725 138 66 2 1 137 13 149 1.37e-41 144
MS.gene41421.t1 AT3G27920 52.679 112 53 0 7 118 8 119 2.26e-41 142
MS.gene41421.t1 AT5G40350 49.254 134 63 1 14 142 18 151 2.41e-41 142
MS.gene41421.t1 AT3G61250 59.615 104 42 0 14 117 13 116 3.07e-41 144
MS.gene41421.t1 AT5G49330 58.120 117 48 1 1 117 1 116 3.08e-41 145
MS.gene41421.t1 AT5G62470 58.716 109 45 0 14 122 13 121 3.10e-41 145
MS.gene41421.t1 AT1G08810 53.125 128 60 0 14 141 13 140 3.35e-41 143
MS.gene41421.t1 AT5G14750 54.206 107 49 0 12 118 15 121 6.83e-41 140
MS.gene41421.t1 AT3G47600 59.434 106 43 0 14 119 13 118 7.44e-41 144
MS.gene41421.t1 AT1G18710 58.491 106 44 0 14 119 13 118 8.68e-41 142
MS.gene41421.t1 AT3G13540 52.033 123 58 1 9 130 19 141 9.90e-41 141
MS.gene41421.t1 AT1G79180 50.694 144 38 1 10 120 11 154 1.34e-40 143
MS.gene41421.t1 AT3G27810 47.857 140 72 1 14 152 21 160 1.40e-40 140
MS.gene41421.t1 AT5G52600 54.545 110 50 0 7 116 6 115 2.27e-40 139
MS.gene41421.t1 AT2G47460 49.315 146 73 1 1 146 1 145 2.52e-40 143
MS.gene41421.t1 AT5G40330 53.271 107 50 0 12 118 11 117 4.36e-40 139
MS.gene41421.t1 AT3G24310 61.538 104 40 0 14 117 19 122 7.63e-40 139
MS.gene41421.t1 AT1G48000 57.627 118 48 2 14 130 33 149 1.22e-39 138
MS.gene41421.t1 AT3G28910 54.310 116 52 1 14 129 13 127 1.27e-39 140
MS.gene41421.t1 AT1G74650 55.085 118 52 1 1 118 1 117 1.41e-39 140
MS.gene41421.t1 AT4G13480 61.538 104 40 0 14 117 7 110 1.43e-39 139
MS.gene41421.t1 AT5G62470 58.716 109 44 1 14 122 13 120 2.20e-39 140
MS.gene41421.t1 AT3G62610 54.701 117 52 1 1 117 1 116 5.69e-39 139
MS.gene41421.t1 AT5G57620 55.932 118 50 2 1 117 1 117 1.50e-38 138
MS.gene41421.t1 AT1G68320 56.250 112 48 1 14 125 20 130 1.76e-38 136
MS.gene41421.t1 AT5G62320 48.800 125 56 2 14 130 14 138 2.43e-38 135
MS.gene41421.t1 AT2G36890 49.254 134 66 2 1 133 1 133 2.83e-38 136
MS.gene41421.t1 AT2G36890 51.240 121 58 1 14 133 54 174 4.84e-38 137
MS.gene41421.t1 AT3G49690 52.800 125 57 2 1 124 1 124 7.98e-38 135
MS.gene41421.t1 AT5G65790 51.128 133 59 3 1 132 1 128 1.28e-37 136
MS.gene41421.t1 AT3G28470 59.184 98 40 0 14 111 13 110 2.60e-37 134
MS.gene41421.t1 AT3G11440 56.311 103 45 0 14 116 42 144 9.03e-37 135
MS.gene41421.t1 AT4G37780 52.137 117 55 1 14 129 13 129 9.71e-37 132
MS.gene41421.t1 AT2G32460 51.754 114 55 0 14 127 7 120 1.04e-36 135
MS.gene41421.t1 AT2G32460 51.754 114 55 0 14 127 19 132 1.06e-36 136
MS.gene41421.t1 AT2G47190 50.442 113 56 0 5 117 12 124 2.04e-36 130
MS.gene41421.t1 AT1G66370 55.340 103 46 0 14 116 9 111 2.47e-36 130
MS.gene41421.t1 AT3G11440 56.311 103 45 0 14 116 42 144 2.47e-36 135
MS.gene41421.t1 AT3G11440 56.311 103 45 0 14 116 42 144 2.47e-36 135
MS.gene41421.t1 AT3G11440 56.311 103 45 0 14 116 42 144 2.47e-36 135
MS.gene41421.t1 AT5G59780 54.717 106 48 0 12 117 7 112 5.01e-36 129
MS.gene41421.t1 AT5G06100 52.727 110 52 0 14 123 33 142 6.98e-36 133
MS.gene41421.t1 AT1G25340 48.387 124 63 1 12 134 17 140 1.02e-35 129
MS.gene41421.t1 AT5G06100 52.727 110 52 0 14 123 33 142 1.94e-35 133
MS.gene41421.t1 AT5G06100 52.727 110 52 0 14 123 33 142 1.94e-35 133
MS.gene41421.t1 AT5G06100 52.727 110 52 0 14 123 33 142 1.94e-35 133
MS.gene41421.t1 AT5G06100 52.727 110 52 0 14 123 33 142 1.94e-35 133
MS.gene41421.t1 AT3G06490 54.783 115 51 1 14 128 20 133 2.22e-35 129
MS.gene41421.t1 AT3G53200 56.311 103 45 0 14 116 10 112 2.91e-35 127
MS.gene41421.t1 AT3G46130 54.808 104 47 0 14 117 10 113 3.59e-35 127
MS.gene41421.t1 AT2G26960 55.446 101 45 0 15 115 22 122 3.64e-35 130
MS.gene41421.t1 AT2G26950 47.706 109 57 0 15 123 18 126 8.62e-35 129
MS.gene41421.t1 AT4G26930 54.902 102 46 0 14 115 20 121 2.13e-34 128
MS.gene41421.t1 AT5G55020 50.909 110 54 0 14 123 27 136 3.64e-34 129
MS.gene41421.t1 AT1G66380 58.252 103 43 0 14 116 9 111 3.96e-34 120
MS.gene41421.t1 AT5G49620 53.913 115 52 1 14 128 27 140 5.20e-34 125
MS.gene41421.t1 AT3G60460 51.282 117 55 2 6 121 4 119 8.07e-34 124
MS.gene41421.t1 AT1G56650 52.174 115 55 0 14 128 9 123 1.78e-33 122
MS.gene41421.t1 AT5G26660 65.882 85 28 1 44 127 12 96 1.21e-32 122
MS.gene41421.t1 AT1G66390 53.153 111 52 0 6 116 1 111 1.53e-32 120
MS.gene41421.t1 AT3G12820 71.831 71 20 0 49 119 2 72 9.00e-32 116
MS.gene41421.t1 AT1G25340 45.968 124 61 2 12 134 17 135 2.01e-31 117
MS.gene41421.t1 AT1G25340 45.968 124 61 2 12 134 17 135 3.17e-31 118
MS.gene41421.t1 AT5G35550 36.816 201 86 5 46 209 50 246 1.56e-30 115
MS.gene41421.t1 AT5G59780 64.000 75 27 0 43 117 17 91 2.08e-30 113
MS.gene41421.t1 AT5G49620 48.062 129 52 2 14 128 27 154 2.71e-30 115
MS.gene41421.t1 AT3G46130 64.000 75 27 0 43 117 17 91 3.20e-30 113
MS.gene41421.t1 AT3G46130 64.384 73 26 0 45 117 9 81 1.19e-29 112
MS.gene41421.t1 AT3G47600 53.125 96 41 1 24 119 21 112 1.48e-29 114
MS.gene41421.t1 AT3G53200 63.158 76 28 0 41 116 4 79 2.20e-29 110
MS.gene41421.t1 AT5G40350 48.039 102 48 1 46 142 5 106 2.62e-29 109
MS.gene41421.t1 AT3G27810 46.296 108 57 1 46 152 4 111 1.04e-28 108
MS.gene41421.t1 AT5G14750 60.000 70 28 0 49 118 18 87 1.12e-27 105
MS.gene41421.t1 AT5G67300 49.038 104 52 1 15 118 6 108 1.58e-27 108
MS.gene41421.t1 AT3G50060 46.789 109 57 1 15 123 6 113 5.31e-27 106
MS.gene41421.t1 AT1G69560 38.356 146 75 3 15 159 107 238 1.23e-26 106
MS.gene41421.t1 AT4G37260 50.000 104 51 1 15 118 13 115 1.30e-26 106
MS.gene41421.t1 AT1G69560 38.356 146 75 3 15 159 123 254 1.33e-26 106
MS.gene41421.t1 AT1G17950 46.078 102 54 1 15 116 5 105 2.37e-26 103
MS.gene41421.t1 AT2G23290 49.038 104 52 1 15 118 13 115 3.06e-26 104
MS.gene41421.t1 AT5G11050 31.019 216 122 5 15 214 105 309 6.21e-26 105
MS.gene41421.t1 AT5G02320 36.869 198 103 7 11 208 123 298 1.52e-25 105
MS.gene41421.t1 AT5G02320 36.869 198 103 7 11 208 123 298 1.52e-25 105
MS.gene41421.t1 AT5G02320 34.343 198 108 5 11 208 63 238 1.98e-25 105
MS.gene41421.t1 AT2G39880 50.000 106 50 2 15 119 50 153 8.05e-25 102
MS.gene41421.t1 AT3G55730 50.476 105 49 2 15 118 56 158 8.46e-25 102
MS.gene41421.t1 AT3G09230 48.039 102 52 1 15 116 55 155 1.46e-24 101
MS.gene41421.t1 AT1G73410 44.660 103 56 1 15 117 6 107 3.78e-24 97.8
MS.gene41421.t1 AT4G33450 34.752 141 81 2 2 142 6 135 4.83e-24 97.8
MS.gene41421.t1 AT1G73410 44.660 103 56 1 15 117 6 107 7.97e-24 95.9
MS.gene41421.t1 AT1G26780 44.660 103 54 2 15 116 98 198 1.24e-23 97.4
MS.gene41421.t1 AT1G26780 44.660 103 54 2 15 116 98 198 1.32e-23 98.6
MS.gene41421.t1 AT3G23250 64.407 59 21 0 59 117 1 59 1.70e-23 95.9
MS.gene41421.t1 AT5G58850 36.090 133 78 2 15 147 105 230 4.59e-23 97.8
MS.gene41421.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.01e-22 97.8
MS.gene41421.t1 AT4G32730 35.849 106 66 2 15 119 35 139 1.78e-13 70.5
MS.gene41421.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.01e-22 97.8
MS.gene41421.t1 AT4G32730 35.849 106 66 2 15 119 35 139 1.78e-13 70.5
MS.gene41421.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.01e-22 97.8
MS.gene41421.t1 AT4G32730 35.849 106 66 2 15 119 35 139 1.78e-13 70.5
MS.gene41421.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.01e-22 97.8
MS.gene41421.t1 AT4G32730 35.849 106 66 2 15 119 35 139 1.78e-13 70.5
MS.gene41421.t1 AT4G32730 39.098 133 70 3 11 143 83 204 1.09e-22 97.8
MS.gene41421.t1 AT4G32730 35.849 106 66 2 15 119 35 139 2.05e-13 70.5
MS.gene41421.t1 AT1G22640 48.780 82 41 1 59 139 1 82 1.38e-22 92.8
MS.gene41421.t1 AT5G17800 40.517 116 63 2 15 130 93 202 1.74e-22 95.1
MS.gene41421.t1 AT1G66380 59.722 72 29 0 45 116 7 78 3.41e-22 89.0
MS.gene41421.t1 AT3G09370 43.396 106 59 1 11 116 131 235 5.96e-22 95.1
MS.gene41421.t1 AT3G09370 34.862 109 69 2 12 119 80 187 3.78e-13 69.3
MS.gene41421.t1 AT4G18770 41.509 106 59 2 15 119 217 320 6.82e-22 94.7
MS.gene41421.t1 AT5G40360 39.130 115 68 2 3 117 146 258 7.66e-22 93.6
MS.gene41421.t1 AT3G09370 43.396 106 59 1 11 116 139 243 7.98e-22 94.7
MS.gene41421.t1 AT3G09370 34.862 109 69 2 12 119 88 195 3.96e-13 69.3
MS.gene41421.t1 AT3G09370 43.396 106 59 1 11 116 126 230 7.98e-22 94.7
MS.gene41421.t1 AT3G09370 34.862 109 69 2 12 119 75 182 4.74e-13 68.9
MS.gene41421.t1 AT5G11510 37.500 120 74 1 11 130 77 195 8.47e-22 95.1
MS.gene41421.t1 AT5G11510 33.019 106 69 2 15 119 29 133 6.46e-11 63.2
MS.gene41421.t1 AT5G11510 37.500 120 74 1 11 130 77 195 8.47e-22 95.1
MS.gene41421.t1 AT5G11510 33.019 106 69 2 15 119 29 133 6.46e-11 63.2
MS.gene41421.t1 AT5G11510 37.500 120 74 1 11 130 77 195 8.47e-22 95.1
MS.gene41421.t1 AT5G11510 33.019 106 69 2 15 119 29 133 6.46e-11 63.2
MS.gene41421.t1 AT5G11510 37.500 120 74 1 11 130 77 195 1.25e-21 94.7
MS.gene41421.t1 AT5G11510 33.019 106 69 2 15 119 29 133 8.14e-11 62.8
MS.gene41421.t1 AT5G11510 37.500 120 74 1 11 130 77 195 1.28e-21 94.7
MS.gene41421.t1 AT5G11510 33.019 106 69 2 15 119 29 133 8.37e-11 62.4
MS.gene41421.t1 AT1G66380 52.941 85 40 0 6 90 1 85 1.71e-21 87.0
MS.gene41421.t1 AT3G27785 38.983 118 67 2 3 116 173 289 2.53e-21 93.2
MS.gene41421.t1 AT1G71030 53.333 75 34 1 45 119 13 86 3.45e-21 89.0
MS.gene41421.t1 AT1G71030 55.882 68 30 0 52 119 5 72 3.57e-21 88.2
MS.gene41421.t1 AT3G29020 34.641 153 88 4 15 160 65 212 4.49e-21 89.4
MS.gene41421.t1 AT5G39700 36.735 147 86 3 7 151 48 189 1.80e-20 86.7
MS.gene41421.t1 AT2G25230 42.000 100 56 2 18 117 29 126 2.68e-20 87.4
MS.gene41421.t1 AT4G25560 44.094 127 52 2 71 178 2 128 2.97e-20 86.7
MS.gene41421.t1 AT5G14750 55.000 60 27 0 59 118 1 60 3.25e-20 84.7
MS.gene41421.t1 AT5G14750 55.000 60 27 0 59 118 1 60 3.25e-20 84.7
MS.gene41421.t1 AT3G29020 39.806 103 61 1 15 117 67 168 4.11e-20 88.2
MS.gene41421.t1 AT1G18960 33.613 119 75 3 15 132 10 125 4.28e-19 85.5
MS.gene41421.t1 AT2G37630 36.667 120 72 2 18 135 7 124 3.74e-18 83.6
MS.gene41421.t1 AT2G02820 37.963 108 65 2 18 124 33 139 1.85e-17 81.3
MS.gene41421.t1 AT2G02820 37.963 108 65 2 18 124 33 139 2.69e-17 81.6
MS.gene41421.t1 AT2G02820 37.963 108 65 2 18 124 33 139 3.65e-17 81.3
MS.gene41421.t1 AT4G00540 37.391 115 68 2 6 117 94 207 7.06e-17 80.1
MS.gene41421.t1 AT4G00540 29.134 127 82 3 2 120 33 159 2.24e-12 67.0
MS.gene41421.t1 AT4G00540 37.391 115 68 2 6 117 92 205 1.06e-16 79.7
MS.gene41421.t1 AT4G00540 31.579 114 70 3 15 120 44 157 5.83e-12 65.9
MS.gene41421.t1 AT1G14350 37.273 110 67 2 18 126 28 136 2.07e-16 79.0
MS.gene41421.t1 AT1G14350 37.273 110 67 2 18 126 28 136 2.07e-16 79.0
MS.gene41421.t1 AT5G40430 36.893 103 62 3 15 117 54 153 3.11e-15 73.9
MS.gene41421.t1 AT5G59780 55.319 47 21 0 71 117 1 47 1.42e-12 64.7
MS.gene41421.t1 AT3G46130 55.319 47 21 0 71 117 1 47 2.40e-12 64.7
MS.gene41421.t1 AT3G18100 30.147 136 86 2 14 145 545 675 1.60e-11 64.7
MS.gene41421.t1 AT3G18100 30.147 136 86 2 14 145 497 627 1.62e-11 64.7
MS.gene41421.t1 AT3G18100 30.147 136 86 2 14 145 332 462 1.73e-11 64.7
MS.gene41421.t1 AT3G18100 30.147 136 86 2 14 145 384 514 1.76e-11 64.7
MS.gene41421.t1 AT5G61420 55.000 60 24 2 82 140 2 59 1.92e-11 63.5

Find 51 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAACCAACCTGCCTTAAT+TGG 0.183204 1.4:+78460131 None:intergenic
AACAACCATGACCATGTTTA+AGG 0.206159 1.4:+78460165 None:intergenic
TACAAATTCAGTTGAATCTT+TGG 0.229080 1.4:-78458305 MS.gene41421:CDS
ATCTCATTGTCTGTCCTTCC+TGG 0.240508 1.4:+78458574 None:intergenic
CTGAGTTTGTGATCTTCTTC+AGG 0.242651 1.4:+78460197 None:intergenic
GCAAATCAAATTGTGGGAAA+TGG 0.281472 1.4:-78458148 MS.gene41421:CDS
TTGGAGCTCTGTCCCAATTA+AGG 0.299321 1.4:-78460144 MS.gene41421:CDS
CAAAACATAGAAAAGGTTTA+TGG 0.327160 1.4:-78460223 MS.gene41421:CDS
CATTCAGCAAACAATAGTTT+TGG 0.334613 1.4:+78458361 None:intergenic
TGATTCCATTTCCATAGCTT+TGG 0.339299 1.4:+78458513 None:intergenic
TAAGGTGGATTAACTATCTA+AGG 0.341722 1.4:-78459717 MS.gene41421:CDS
GGTGCTTTGATGTGTCTCTT+TGG 0.342200 1.4:+78458387 None:intergenic
CAAATCAAATTGTGGGAAAT+GGG 0.348116 1.4:-78458147 MS.gene41421:CDS
AACTTTCCTCTCTTTAATCC+TGG 0.382456 1.4:+78459694 None:intergenic
CAAAACTATTGTTTGCTGAA+TGG 0.398678 1.4:-78458360 MS.gene41421:CDS
GGGTTTGTCCATTGCATGCC+TGG 0.405137 1.4:-78458127 MS.gene41421:CDS
GAATCTTTGGTCATGAGAAA+TGG 0.412406 1.4:-78458292 MS.gene41421:CDS
GAGAGGAAAGTTCAGCAAAC+AGG 0.416883 1.4:-78459683 MS.gene41421:CDS
GTTTGCTGAATGGCTTTCAT+TGG 0.418059 1.4:-78458350 MS.gene41421:CDS
TTAAACATGGTCATGGTTGT+TGG 0.431623 1.4:-78460163 MS.gene41421:CDS
AAATTTGCAAATCAAATTGT+GGG 0.441722 1.4:-78458154 MS.gene41421:CDS
TAAATTTGCAAATCAAATTG+TGG 0.468216 1.4:-78458155 MS.gene41421:CDS
AGTGGCCAAAGCTATGGAAA+TGG 0.470398 1.4:-78458518 MS.gene41421:CDS
CTCACCCTTCATCACATGTT+AGG 0.480777 1.4:-78459646 MS.gene41421:CDS
GAAACCAACCTGCCTTAATT+GGG 0.488214 1.4:+78460132 None:intergenic
AATGATGCAATGTACGTTTG+AGG 0.502056 1.4:-78458073 None:intergenic
ATGCAAGAGGGACCATTCAA+TGG 0.504386 1.4:-78458235 MS.gene41421:CDS
ACAAAACCAAAACATAGAAA+AGG 0.509605 1.4:-78460230 MS.gene41421:CDS
AAAGAGAGTGGCCAAAGCTA+TGG 0.515504 1.4:-78458524 MS.gene41421:CDS
TTATGAAACTCTCCATTGAA+TGG 0.518250 1.4:+78458223 None:intergenic
TGTATAGGCTTGCAAAGGAA+TGG 0.519565 1.4:-78459754 MS.gene41421:intron
TGGATTAACTATCTAAGGCC+AGG 0.519824 1.4:-78459712 MS.gene41421:CDS
AAAGTTCAGCAAACAGGAGG+AGG 0.533564 1.4:-78459677 MS.gene41421:CDS
GTGATGTTGTTATAATTGTG+TGG 0.534849 1.4:+78458409 None:intergenic
AGCTCTGTCCCAATTAAGGC+AGG 0.541894 1.4:-78460140 MS.gene41421:intron
CATCTCAGTGGCTGAAATGT+TGG 0.543027 1.4:+78458192 None:intergenic
TTGTTACTTAAATCAACTCC+AGG 0.543581 1.4:+78458109 None:intergenic
CAGATAGCACAACATTTGCC+AGG 0.553213 1.4:-78458592 MS.gene41421:CDS
TGTTGCCTAACATGTGATGA+AGG 0.568808 1.4:+78459641 None:intergenic
AATCAACTCCAGGCATGCAA+TGG 0.573572 1.4:+78458119 None:intergenic
TAGCACAACATTTGCCAGGA+AGG 0.581725 1.4:-78458588 MS.gene41421:CDS
TCAAGAAGCTACAATGCAAG+AGG 0.583454 1.4:-78458248 MS.gene41421:CDS
TACATCCTTAAACATGGTCA+TGG 0.598095 1.4:-78460170 MS.gene41421:CDS
CTAAGGCCAGGATTAAAGAG+AGG 0.629264 1.4:-78459700 MS.gene41421:CDS
AGGAAAGTTCAGCAAACAGG+AGG 0.649041 1.4:-78459680 MS.gene41421:CDS
CAAGAAGCTACAATGCAAGA+GGG 0.649433 1.4:-78458247 MS.gene41421:CDS
ATACATGTATAGGCTTGCAA+AGG 0.656359 1.4:-78459759 MS.gene41421:intron
AGAAACTACATCCTTAAACA+TGG 0.675410 1.4:-78460176 MS.gene41421:CDS
CTAACATGTGATGAAGGGTG+AGG 0.683728 1.4:+78459647 None:intergenic
GTTGCCTAACATGTGATGAA+GGG 0.702714 1.4:+78459642 None:intergenic
CTGTGAATTGAACATCTCAG+TGG 0.748090 1.4:+78458180 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAATTAACTTAAATTATAT+TGG - chr1.4:78459703-78459722 MS.gene41421:CDS 10.0%
!!! TTTTAGATAATTTTAAATAG+TGG + chr1.4:78459237-78459256 None:intergenic 10.0%
!! ATATTAAATCATCTATCAAA+TGG + chr1.4:78459211-78459230 None:intergenic 15.0%
!!! TTTAAGTTAGAGAATATAAT+TGG - chr1.4:78458809-78458828 MS.gene41421:intron 15.0%
!! AAATTTGCAAATCAAATTGT+GGG - chr1.4:78460175-78460194 MS.gene41421:CDS 20.0%
!! ACAATGAGATAAAAAACTAT+TGG - chr1.4:78459768-78459787 MS.gene41421:intron 20.0%
!! ACCTACTTATAAATATGATT+AGG + chr1.4:78458248-78458267 None:intergenic 20.0%
!! CCTACTTATAAATATGATTA+GGG + chr1.4:78458247-78458266 None:intergenic 20.0%
!! GGAAAAAAAAAAAAAAAGCA+TGG - chr1.4:78458895-78458914 MS.gene41421:intron 20.0%
!! TAAATTTGCAAATCAAATTG+TGG - chr1.4:78460174-78460193 MS.gene41421:CDS 20.0%
!! TAACTTAAATTATATTGGTC+AGG - chr1.4:78459708-78459727 MS.gene41421:CDS 20.0%
!! TATTCAATTGTTCTATCTAA+TGG - chr1.4:78458536-78458555 MS.gene41421:CDS 20.0%
!!! TTGATTTTTGCTAAAATGTA+TGG - chr1.4:78458481-78458500 MS.gene41421:CDS 20.0%
!!! TTTATTTTATAGAAGCAACT+AGG - chr1.4:78458861-78458880 MS.gene41421:intron 20.0%
!!! TTTGTTTTCCTTTGTTTTTA+TGG - chr1.4:78459384-78459403 MS.gene41421:intron 20.0%
! AATATACAGAATTGAGGAAT+AGG + chr1.4:78459009-78459028 None:intergenic 25.0%
! ACAAAACCAAAACATAGAAA+AGG - chr1.4:78458099-78458118 MS.gene41421:CDS 25.0%
! AGTTTGAATATACAGAATTG+AGG + chr1.4:78459015-78459034 None:intergenic 25.0%
! CAAAACATAGAAAAGGTTTA+TGG - chr1.4:78458106-78458125 MS.gene41421:CDS 25.0%
! CCCTAATCATATTTATAAGT+AGG - chr1.4:78458244-78458263 MS.gene41421:CDS 25.0%
! CTTATCATCCTTCATTTAAA+GGG + chr1.4:78459683-78459702 None:intergenic 25.0%
! GTTAGAGAATATAATTGGAT+TGG - chr1.4:78458814-78458833 MS.gene41421:intron 25.0%
! TAAGAGTTTGAATCCTAAAA+TGG - chr1.4:78458312-78458331 MS.gene41421:CDS 25.0%
! TACAAATTCAGTTGAATCTT+TGG - chr1.4:78460024-78460043 MS.gene41421:intron 25.0%
! TCATTTATTTCCAATTACCA+AGG - chr1.4:78459146-78459165 MS.gene41421:intron 25.0%
! TCTTATCATCCTTCATTTAA+AGG + chr1.4:78459684-78459703 None:intergenic 25.0%
! TGTTAGTTCCATAAAAACAA+AGG + chr1.4:78459395-78459414 None:intergenic 25.0%
! TTCATATTTGAAAAAGAGAG+TGG - chr1.4:78459793-78459812 MS.gene41421:intron 25.0%
!! AAAAGTCTAATGATGATGAA+CGG - chr1.4:78459253-78459272 MS.gene41421:intron 25.0%
!! AATTCACTACTTTGAACTTT+TGG + chr1.4:78458777-78458796 None:intergenic 25.0%
!! CATAAACCTTTTCTATGTTT+TGG + chr1.4:78458108-78458127 None:intergenic 25.0%
!! CATGCTCTTCTTTTTAATAA+TGG - chr1.4:78458956-78458975 MS.gene41421:intron 25.0%
!! TCTTTAGAAGTAGAAGTTTA+CGG - chr1.4:78459279-78459298 MS.gene41421:intron 25.0%
!!! TCTTTTTTCCCTTTAAATGA+AGG - chr1.4:78459672-78459691 MS.gene41421:CDS 25.0%
AGAAACTACATCCTTAAACA+TGG - chr1.4:78458153-78458172 MS.gene41421:CDS 30.0%
AGAGATGAAATAAACCTATG+TGG - chr1.4:78459169-78459188 MS.gene41421:intron 30.0%
ATGTCATCGTCTTAATAGTA+AGG + chr1.4:78459472-78459491 None:intergenic 30.0%
CAAATCAAATTGTGGGAAAT+GGG - chr1.4:78460182-78460201 MS.gene41421:CDS 30.0%
CTTAAATTATATTGGTCAGG+TGG - chr1.4:78459711-78459730 MS.gene41421:CDS 30.0%
GTACAATGTCATACATGTAT+AGG - chr1.4:78458560-78458579 MS.gene41421:CDS 30.0%
GTGATGTTGTTATAATTGTG+TGG + chr1.4:78459923-78459942 None:intergenic 30.0%
TCAACAGTTCTTAATAGCTA+AGG + chr1.4:78458465-78458484 None:intergenic 30.0%
TTATGAAACTCTCCATTGAA+TGG + chr1.4:78460109-78460128 None:intergenic 30.0%
TTCAAACTAAGCCTATTTCA+AGG - chr1.4:78459027-78459046 MS.gene41421:intron 30.0%
TTGGTTTCTTTCTTCTTCAA+AGG - chr1.4:78458212-78458231 MS.gene41421:CDS 30.0%
! AAAAAAAAGCATGGCTTGAT+TGG - chr1.4:78458904-78458923 MS.gene41421:intron 30.0%
! AGAGAATATAATTGGATTGG+AGG - chr1.4:78458817-78458836 MS.gene41421:intron 30.0%
! CAAAACTATTGTTTGCTGAA+TGG - chr1.4:78459969-78459988 MS.gene41421:intron 30.0%
! CATTCAGCAAACAATAGTTT+TGG + chr1.4:78459971-78459990 None:intergenic 30.0%
! GAGAATATAATTGGATTGGA+GGG - chr1.4:78458818-78458837 MS.gene41421:intron 30.0%
! TTGTTACTTAAATCAACTCC+AGG + chr1.4:78460223-78460242 None:intergenic 30.0%
!! TAAGGTGGATTAACTATCTA+AGG - chr1.4:78458612-78458631 MS.gene41421:intron 30.0%
!!! AGCAAACAATAGTTTTGGTA+AGG + chr1.4:78459966-78459985 None:intergenic 30.0%
!!! TTTGGTTTTGTCTTTTCTAG+TGG + chr1.4:78458090-78458109 None:intergenic 30.0%
AAAACACCATCGATCATCAT+TGG + chr1.4:78459419-78459438 None:intergenic 35.0%
AAACACCATCGATCATCATT+GGG + chr1.4:78459418-78459437 None:intergenic 35.0%
AAACCTATGTGGTGAGATTT+GGG - chr1.4:78459180-78459199 MS.gene41421:intron 35.0%
AACAACCATGACCATGTTTA+AGG + chr1.4:78458167-78458186 None:intergenic 35.0%
AACTTTCCTCTCTTTAATCC+TGG + chr1.4:78458638-78458657 None:intergenic 35.0%
AGCAACTAGGCTGTATTTAA+TGG - chr1.4:78458874-78458893 MS.gene41421:intron 35.0%
AGGTTTATTTCATCTCTCCT+TGG + chr1.4:78459166-78459185 None:intergenic 35.0%
ATACATGTATAGGCTTGCAA+AGG - chr1.4:78458570-78458589 MS.gene41421:CDS 35.0%
ATGTTTACTATGATCGGTGT+TGG - chr1.4:78459310-78459329 MS.gene41421:intron 35.0%
CTCCTCATGTTTACTATGAT+CGG - chr1.4:78459304-78459323 MS.gene41421:intron 35.0%
GAATCTTTGGTCATGAGAAA+TGG - chr1.4:78460037-78460056 MS.gene41421:intron 35.0%
GCAAATCAAATTGTGGGAAA+TGG - chr1.4:78460181-78460200 MS.gene41421:CDS 35.0%
GGAACACATAACCTTGAAAT+AGG + chr1.4:78459041-78459060 None:intergenic 35.0%
GTGAAGGAAAACTCTATAGA+AGG + chr1.4:78459062-78459081 None:intergenic 35.0%
TAAACCTATGTGGTGAGATT+TGG - chr1.4:78459179-78459198 MS.gene41421:intron 35.0%
TACATCCTTAAACATGGTCA+TGG - chr1.4:78458159-78458178 MS.gene41421:CDS 35.0%
TGATTCCATTTCCATAGCTT+TGG + chr1.4:78459819-78459838 None:intergenic 35.0%
TTAAACATGGTCATGGTTGT+TGG - chr1.4:78458166-78458185 MS.gene41421:CDS 35.0%
! CTACTGATTGAAGTTTGTGA+AGG + chr1.4:78459078-78459097 None:intergenic 35.0%
! GAAGTTTAAGATTCTCCTTG+TGG + chr1.4:78459610-78459629 None:intergenic 35.0%
! TTTCATCTCTCCTTGGTAAT+TGG + chr1.4:78459159-78459178 None:intergenic 35.0%
!! ATTTAAAGTTTTTGCCCGTG+AGG - chr1.4:78458275-78458294 MS.gene41421:CDS 35.0%
!! GTGACATTGATGACCATTTT+AGG + chr1.4:78458328-78458347 None:intergenic 35.0%
!! GTTGCAAGTTTTTGAAGAGA+GGG + chr1.4:78459893-78459912 None:intergenic 35.0%
!! TGTTGCAAGTTTTTGAAGAG+AGG + chr1.4:78459894-78459913 None:intergenic 35.0%
AACCTATGTGGTGAGATTTG+GGG - chr1.4:78459181-78459200 MS.gene41421:intron 40.0%
AGAAACCAACCTGCCTTAAT+TGG + chr1.4:78458201-78458220 None:intergenic 40.0%
ATGGAAAAAGCTGCAGACTA+AGG - chr1.4:78458594-78458613 MS.gene41421:CDS 40.0%
CAAGAAGCTACAATGCAAGA+GGG - chr1.4:78460082-78460101 MS.gene41421:intron 40.0%
CACCGATCATAGTAAACATG+AGG + chr1.4:78459309-78459328 None:intergenic 40.0%
CTGAGTTTGTGATCTTCTTC+AGG + chr1.4:78458135-78458154 None:intergenic 40.0%
CTGTGAATTGAACATCTCAG+TGG + chr1.4:78460152-78460171 None:intergenic 40.0%
CTTGATTGGTAAGTCAAACC+AGG - chr1.4:78458918-78458937 MS.gene41421:intron 40.0%
GAAACCAACCTGCCTTAATT+GGG + chr1.4:78458200-78458219 None:intergenic 40.0%
GTTGCCTAACATGTGATGAA+GGG + chr1.4:78458690-78458709 None:intergenic 40.0%
TAACACCCAATGATGATCGA+TGG - chr1.4:78459410-78459429 MS.gene41421:intron 40.0%
TCAAGAAGCTACAATGCAAG+AGG - chr1.4:78460081-78460100 MS.gene41421:intron 40.0%
TCGTCTTAATAGTAAGGACG+AGG + chr1.4:78459466-78459485 None:intergenic 40.0%
TGGTAAGTCAAACCAGGAAT+TGG - chr1.4:78458924-78458943 MS.gene41421:intron 40.0%
TGTATAGGCTTGCAAAGGAA+TGG - chr1.4:78458575-78458594 MS.gene41421:CDS 40.0%
TGTTGCCTAACATGTGATGA+AGG + chr1.4:78458691-78458710 None:intergenic 40.0%
! GTTTGCTGAATGGCTTTCAT+TGG - chr1.4:78459979-78459998 MS.gene41421:intron 40.0%
! TGGATTAACTATCTAAGGCC+AGG - chr1.4:78458617-78458636 MS.gene41421:intron 40.0%
!! GTTTTGTCTTTTCTAGTGGC+TGG + chr1.4:78458086-78458105 None:intergenic 40.0%
AAAGAGAGTGGCCAAAGCTA+TGG - chr1.4:78459805-78459824 MS.gene41421:intron 45.0%
AAAGTTCAGCAAACAGGAGG+AGG - chr1.4:78458652-78458671 MS.gene41421:intron 45.0%
AATCAACTCCAGGCATGCAA+TGG + chr1.4:78460213-78460232 None:intergenic 45.0%
ACTACAAAGCTGACACCTCA+CGG + chr1.4:78458293-78458312 None:intergenic 45.0%
AGGAAAGTTCAGCAAACAGG+AGG - chr1.4:78458649-78458668 MS.gene41421:intron 45.0%
AGTCAAACCAGGAATTGGCT+TGG - chr1.4:78458929-78458948 MS.gene41421:intron 45.0%
AGTGGCCAAAGCTATGGAAA+TGG - chr1.4:78459811-78459830 MS.gene41421:intron 45.0%
ATCTCATTGTCTGTCCTTCC+TGG + chr1.4:78459758-78459777 None:intergenic 45.0%
ATGCAAGAGGGACCATTCAA+TGG - chr1.4:78460094-78460113 MS.gene41421:intron 45.0%
ATGCTAACCAAGCCAATTCC+TGG + chr1.4:78458939-78458958 None:intergenic 45.0%
CAGATAGCACAACATTTGCC+AGG - chr1.4:78459737-78459756 MS.gene41421:CDS 45.0%
CATCTCAGTGGCTGAAATGT+TGG + chr1.4:78460140-78460159 None:intergenic 45.0%
CTAACATGTGATGAAGGGTG+AGG + chr1.4:78458685-78458704 None:intergenic 45.0%
CTAAGGCCAGGATTAAAGAG+AGG - chr1.4:78458629-78458648 MS.gene41421:intron 45.0%
CTCACCCTTCATCACATGTT+AGG - chr1.4:78458683-78458702 MS.gene41421:intron 45.0%
GAAAAAGCTGCAGACTAAGG+TGG - chr1.4:78458597-78458616 MS.gene41421:CDS 45.0%
GACTATGACGCAATAGGTGT+TGG + chr1.4:78459583-78459602 None:intergenic 45.0%
GAGAGGAAAGTTCAGCAAAC+AGG - chr1.4:78458646-78458665 MS.gene41421:intron 45.0%
GGTGCTTTGATGTGTCTCTT+TGG + chr1.4:78459945-78459964 None:intergenic 45.0%
GGTTGAGACTATGACGCAAT+AGG + chr1.4:78459589-78459608 None:intergenic 45.0%
TAGCACAACATTTGCCAGGA+AGG - chr1.4:78459741-78459760 MS.gene41421:CDS 45.0%
TTGGAGCTCTGTCCCAATTA+AGG - chr1.4:78458185-78458204 MS.gene41421:CDS 45.0%
AGCTCTGTCCCAATTAAGGC+AGG - chr1.4:78458189-78458208 MS.gene41421:CDS 50.0%
CACCCCAAATCTCACCACAT+AGG + chr1.4:78459186-78459205 None:intergenic 50.0%
CTACAAAGCTGACACCTCAC+GGG + chr1.4:78458292-78458311 None:intergenic 50.0%
CTATGTGGTGAGATTTGGGG+TGG - chr1.4:78459184-78459203 MS.gene41421:intron 50.0%
CTGTCCCAATTAAGGCAGGT+TGG - chr1.4:78458193-78458212 MS.gene41421:CDS 50.0%
GCGTCATAGTCTCAACCACA+AGG - chr1.4:78459592-78459611 MS.gene41421:intron 50.0%
GGGTTTGTCCATTGCATGCC+TGG - chr1.4:78460202-78460221 MS.gene41421:CDS 55.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 78458075 78460276 78458075 ID=MS.gene41421
chr1.4 mRNA 78458075 78460276 78458075 ID=MS.gene41421.t1;Parent=MS.gene41421
chr1.4 exon 78460141 78460276 78460141 ID=MS.gene41421.t1.exon1;Parent=MS.gene41421.t1
chr1.4 CDS 78460141 78460276 78460141 ID=cds.MS.gene41421.t1;Parent=MS.gene41421.t1
chr1.4 exon 78459640 78459769 78459640 ID=MS.gene41421.t1.exon2;Parent=MS.gene41421.t1
chr1.4 CDS 78459640 78459769 78459640 ID=cds.MS.gene41421.t1;Parent=MS.gene41421.t1
chr1.4 exon 78458075 78458621 78458075 ID=MS.gene41421.t1.exon3;Parent=MS.gene41421.t1
chr1.4 CDS 78458075 78458621 78458075 ID=cds.MS.gene41421.t1;Parent=MS.gene41421.t1
Gene Sequence

>MS.gene41421

ATGGGGTTCCAGCCACTAGAAAAGACAAAACCAAAACATAGAAAAGGTTTATGGTCACCTGAAGAAGATCACAAACTCAGAAACTACATCCTTAAACATGGTCATGGTTGTTGGAGCTCTGTCCCAATTAAGGCAGGTTGGTTTCTTTCTTCTTCAAAGGTGTATTATTCCCTAATCATATTTATAAGTAGGTCATTGTAATTTAAAGTTTTTGCCCGTGAGGTGTCAGCTTTGTAGTAAGAGTTTGAATCCTAAAATGGTCATCAATGTCACGTTAATTTTTTTTTTTTTTTTTGAAAGAGTCACGTTAATTAATAGTAATGATTTTCTCTCTTTCTTATATTTACTTTCAAAAAGTTCTTGTGCTACTGAAGTTTTTAATTAAGTCCTTAGCTATTAAGAACTGTTGATTTTTGCTAAAATGTATGGATTGATTTGAAGAATCATAGTGTATAAGATCATATTCAATTGTTCTATCTAATGGAGTACAATGTCATACATGTATAGGCTTGCAAAGGAATGGAAAAAGCTGCAGACTAAGGTGGATTAACTATCTAAGGCCAGGATTAAAGAGAGGAAAGTTCAGCAAACAGGAGGAGGAAACAATCCTCACCCTTCATCACATGTTAGGCAACAAGTATGTTAGTAGAGTAAATCTACTTTTACTTTTTGTCATTTTTTTTCTAAGTTCAATTTTATCCAAAAGTTCAAAGTAGTGAATTTAATGTGAAAGTTTTAAGTTAGAGAATATAATTGGATTGGAGGGTAGTTTCATATATAATTTTATTTATTTTATAGAAGCAACTAGGCTGTATTTAATGGAAAAAAAAAAAAAAAGCATGGCTTGATTGGTAAGTCAAACCAGGAATTGGCTTGGTTAGCATGCTCTTCTTTTTAATAATGGATGAACATTGAACAAAATATTGATTATCCTATTCCTCAATTCTGTATATTCAAACTAAGCCTATTTCAAGGTTATGTGTTCCTTCTATAGAGTTTTCCTTCACAAACTTCAATCAGTAGTATTAATTGCTACACACACATGCACATTGCATACTCGATGAGATTAATTCATTTATTTCCAATTACCAAGGAGAGATGAAATAAACCTATGTGGTGAGATTTGGGGTGGACCATTTGATAGATGATTTAATATGAACCACTATTTAAAATTATCTAAAAGTCTAATGATGATGAACGGCGTTCTTTAGAAGTAGAAGTTTACGGTACTCCTCATGTTTACTATGATCGGTGTTGGTTTGACAAAAACAAAGAAAAACAAATATGAATTGAGTTTGAAGAATACATATTTGTTTTCCTTTGTTTTTATGGAACTAACACCCAATGATGATCGATGGTGTTTTTTAGAAATAGAAGTTCATAGCGTTCCTCGTCCTTACTATTAAGACGATGACATGATCAGCGTCAGTTTGACAAAAACAAAGAAAAACAAATATGAATTGAGTTTTGAAGAACACATATTTGTTTTTCTTTGTTTTATCGAACCAACACCTATTGCGTCATAGTCTCAACCACAAGGAGAATCTTAAACTTCTACTTTCAAAAGACGACGTACGAGATTCATGTACTCGTTTAATCTTTTTTCCCTTTAAATGAAGGATGATAAGAGAATTAACTTAAATTATATTGGTCAGGTGGTCACAGATAGCACAACATTTGCCAGGAAGGACAGACAATGAGATAAAAAACTATTGGCATTCATATTTGAAAAAGAGAGTGGCCAAAGCTATGGAAATGGAATCACACAAACAATTTCAATATGCTAGCTCAAGCTCAGATACAATGAACTCTTCACCCTCTCTTCAAAAACTTGCAACACAAGATCCACACAATTATAACAACATCACCAAAGAGACACATCAAAGCACCTTACCAAAACTATTGTTTGCTGAATGGCTTTCATTGGATAATGTTAATAGTAGAAACTCTACAAATTCAGTTGAATCTTTGGTCATGAGAAATGGATTTGATCAAAATTCAGCTTTTCAAGAAGCTACAATGCAAGAGGGACCATTCAATGGAGAGTTTCATAATAGTGTGACCAACATTTCAGCCACTGAGATGTTCAATTCACAGCTTAAATTTGCAAATCAAATTGTGGGAAATGGGTTTGTCCATTGCATGCCTGGAGTTGATTTAAGTAACAATTTCAATCTAAGCAATGATGCAATGTACGTTTGA
Protein sequence

>MS.gene41421.t1

MGFQPLEKTKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGKFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKAMEMESHKQFQYASSSSDTMNSSPSLQKLATQDPHNYNNITKETHQSTLPKLLFAEWLSLDNVNSRNSTNSVESLVMRNGFDQNSAFQEATMQEGPFNGEFHNSVTNISATEMFNSQLKFANQIVGNGFVHCMPGVDLSNNFNLSNDAMYV