AlfalfaGEDB | MS.gene41500

M. sativa cultivar XinJiangDaYe / MS.gene41500

KEGG: -
GO: GO:0000976 GO:0000981 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0035326 GO:0043565 GO:0044212 GO:0045893 GO:0045935 GO:0045944 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41500.t1	PNX98523.1	70.2	161	48	0	1	161	1	161	4.90E-54	220.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41500.t1	Q9FJK3	44.2	154	86	0	1	154	1	154	5.2e-28	125.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41500.t1	A0A2K3N650	70.2	161	48	0	1	161	1	161	3.6e-54	220.7

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene41500.t1	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41500.t1	MTR_2g035580	67.089	158	52	0	1	158	1	158	8.72e-64	193
MS.gene41500.t1	MTR_3g467080	49.689	161	80	1	1	160	1	161	1.05e-48	155
MS.gene41500.t1	MTR_3g466980	46.250	160	86	0	1	160	1	160	1.00e-46	152
MS.gene41500.t1	MTR_4g063790	47.239	163	85	1	1	162	1	163	3.39e-46	149
MS.gene41500.t1	MTR_3g031100	45.399	163	88	1	1	162	1	163	4.49e-39	133
MS.gene41500.t1	MTR_3g065100	44.805	154	85	0	1	154	1	154	1.81e-36	126
MS.gene41500.t1	MTR_2g016210	42.073	164	92	2	1	161	1	164	1.89e-36	126
MS.gene41500.t1	MTR_3g465410	46.269	134	71	1	29	161	1	134	5.04e-35	119
MS.gene41500.t1	MTR_5g075380	35.294	153	99	0	1	153	1	153	6.93e-35	119
MS.gene41500.t1	MTR_3g031240	41.718	163	92	2	1	160	1	163	7.78e-33	115

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41500.t1	AT5G48670	44.156	154	86	0	1	154	1	154	7.18e-33	119
MS.gene41500.t1	AT3G05860	39.597	149	90	0	1	149	1	149	4.27e-31	111
MS.gene41500.t1	AT3G05860	39.597	149	90	0	1	149	1	149	1.29e-30	111
MS.gene41500.t1	AT3G05860	39.597	149	90	0	1	149	1	149	1.40e-30	111
MS.gene41500.t1	AT1G65330	39.375	160	87	2	7	161	6	160	5.69e-29	107
MS.gene41500.t1	AT1G65300	36.364	154	96	2	4	156	3	155	9.47e-25	97.1
MS.gene41500.t1	AT1G31640	39.241	158	81	6	6	156	5	154	6.52e-23	94.0
MS.gene41500.t1	AT5G27810	44.944	89	49	0	29	117	1	89	7.88e-23	87.8
MS.gene41500.t1	AT1G22590	30.864	162	101	2	1	158	1	155	7.24e-21	84.0
MS.gene41500.t1	AT1G31630	35.252	139	83	2	7	142	6	140	4.43e-20	85.5

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Find 33 sgRNAs with CRISPR-Local

Find 39 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGATGGTGGATCATG+AGG	0.552677	3.1:-51546062	MS.gene41500:CDS
AAATCGATGGTGGATCATGA+GGG	0.613825	3.1:-51546061	MS.gene41500:CDS
AACTGATGACTCGAAGAGAA+AGG	0.544142	3.1:-51546478	MS.gene41500:CDS
AAGTCGAACAAAGAATCGAA+TGG	0.588974	3.1:-51545859	MS.gene41500:CDS
AATGAAATGAATGATCTAAT+TGG	0.349404	3.1:-51545971	MS.gene41500:CDS
AATGAACTCACCACCTTATG+TGG	0.447211	3.1:-51546205	MS.gene41500:CDS
AATTGGTCAATTCATTCATA+CGG	0.459890	3.1:-51545954	MS.gene41500:CDS
ACATACATCAATTCCACATA+AGG	0.491397	3.1:+51546192	None:intergenic
AGAAGAAGTCCAGATGGTGT+TGG	0.590630	3.1:-51546119	MS.gene41500:CDS
ATCATTCATTTCATTCTTCT+TGG	0.187611	3.1:+51545979	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACATACATCAATTCCACATA+AGG	+	chr3.1:51546156-51546175	None:intergenic	30.0%
ACATTTGGAAAAAGGAAACA+AGG	-	chr3.1:51545892-51545911	MS.gene41500:CDS	30.0%
ATTGGTCAATTCATTCATAC+GGG	-	chr3.1:51546392-51546411	MS.gene41500:intron	30.0%
TGTATGTGGTATAATCTATG+AGG	-	chr3.1:51546169-51546188	MS.gene41500:CDS	30.0%
TTATGTGGAATTGATGTATG+TGG	-	chr3.1:51546155-51546174	MS.gene41500:CDS	30.0%
AAGTCGAACAAAGAATCGAA+TGG	-	chr3.1:51546486-51546505	MS.gene41500:CDS	35.0%
ATTCATACGGGTGAATTGAA+TGG	-	chr3.1:51546404-51546423	MS.gene41500:intron	35.0%
GAAAGGCAACATTTGGAAAA+AGG	-	chr3.1:51545884-51545903	MS.gene41500:CDS	35.0%
GCTTATTGTTGAGAACCTTA+AGG	-	chr3.1:51546463-51546482	MS.gene41500:CDS	35.0%
GGTGAATTGAATGGAAATGT+GGG	-	chr3.1:51546413-51546432	MS.gene41500:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	51545835	51546532	51545835	ID=MS.gene41500
chr3.1	mRNA	51545835	51546532	51545835	ID=MS.gene41500.t1;Parent=MS.gene41500
chr3.1	exon	51546454	51546532	51546454	ID=MS.gene41500.t1.exon1;Parent=MS.gene41500.t1
chr3.1	CDS	51546454	51546532	51546454	ID=cds.MS.gene41500.t1;Parent=MS.gene41500.t1
chr3.1	exon	51545835	51546244	51545835	ID=MS.gene41500.t1.exon2;Parent=MS.gene41500.t1
chr3.1	CDS	51545835	51546244	51545835	ID=cds.MS.gene41500.t1;Parent=MS.gene41500.t1

Gene Sequence

>MS.gene41500

ATGGCTGCTAGAAATTCGAAAATTGAATACATAACTGATGACTCGAAGAGAAAGGCAACATTTGGAAAAAGGAAACAAGGTAATATACTAGCTTTCTCCTTAATTTTTATGAAGCAAATTCATATCAAACAAATTTACCATTAGAAATTTATGAACATCAGTATGCATCGTTTGATATTATGATTTATTTATTTTATCTCTTCAGACAATAATTTAAAGCCATGTCATTTATAGTATAAAGTATCAGTTTTACATTTCTCTGACGGCTCTTGCTATGTTTTCAAACAGGCATAATTAAGAAGATTAATGAACTCACCACCTTATGTGGAATTGATGTATGTGGTATAATCTATGAGGAAAACAACACTCAAGCAATGGTTTGTCCATCCAAAGAAGAAGTCCAGATGGTGTTGGACAAGTTCATGAGTTTTCCTGAATTTGAACAAAGAAAATCGATGGTGGATCATGAGGGCTTCTTGAGGAAATCCATATCAAAAGCCCTAGAGAAGTTAAAGAAACAAAAGAACAACTCCAAGAAGAATGAAATGAATGATCTAATTGGTCAATTCATTCATACGGGTGAATTGAATGGAAATGTGGGTGAGAGTGATCTTGAAGATCTGTTGTTGCTTATTGTTGAGAACCTTAAGGAAGTCGAACAAAGAATCGAATGGATTCAAGCCCAAGATGAAGATTGA

Protein sequence

>MS.gene41500.t1

MAARNSKIEYITDDSKRKATFGKRKQGIIKKINELTTLCGIDVCGIIYEENNTQAMVCPSKEEVQMVLDKFMSFPEFEQRKSMVDHEGFLRKSISKALEKLKKQKNNSKKNEMNDLIGQFIHTGELNGNVGESDLEDLLLLIVENLKEVEQRIEWIQAQDED