Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41598.t1 | AES69527.1 | 89 | 246 | 25 | 1 | 1 | 246 | 1 | 244 | 8.10E-117 | 429.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41598.t1 | Q9FJK3 | 43.2 | 155 | 87 | 1 | 1 | 155 | 1 | 154 | 7.4e-26 | 119.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41598.t1 | G7IWW4 | 89.0 | 246 | 25 | 1 | 1 | 246 | 1 | 244 | 5.9e-117 | 429.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41598.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41598.t1 | MTR_3g031100 | 91.463 | 246 | 19 | 1 | 1 | 246 | 1 | 244 | 6.37e-157 | 435 |
| MS.gene41598.t1 | MTR_2g016210 | 41.597 | 238 | 138 | 1 | 1 | 237 | 1 | 238 | 1.18e-58 | 186 |
| MS.gene41598.t1 | MTR_3g031240 | 49.080 | 163 | 83 | 0 | 1 | 163 | 1 | 163 | 1.37e-50 | 163 |
| MS.gene41598.t1 | MTR_3g466980 | 42.778 | 180 | 92 | 3 | 1 | 176 | 1 | 173 | 5.40e-43 | 145 |
| MS.gene41598.t1 | MTR_3g467080 | 47.134 | 157 | 83 | 0 | 1 | 157 | 1 | 157 | 1.11e-42 | 142 |
| MS.gene41598.t1 | MTR_4g063790 | 43.713 | 167 | 94 | 0 | 1 | 167 | 1 | 167 | 2.34e-42 | 142 |
| MS.gene41598.t1 | MTR_4g032620 | 41.558 | 154 | 90 | 0 | 1 | 154 | 1 | 154 | 7.36e-38 | 132 |
| MS.gene41598.t1 | MTR_3g065100 | 35.897 | 234 | 142 | 3 | 1 | 228 | 1 | 232 | 1.62e-37 | 132 |
| MS.gene41598.t1 | MTR_8g036130 | 37.500 | 168 | 103 | 1 | 1 | 166 | 1 | 168 | 7.38e-34 | 122 |
| MS.gene41598.t1 | MTR_5g075380 | 38.961 | 154 | 93 | 1 | 1 | 154 | 1 | 153 | 3.01e-33 | 118 |
| MS.gene41598.t1 | MTR_4g031910 | 41.667 | 156 | 91 | 0 | 1 | 156 | 1 | 156 | 8.28e-32 | 117 |
| MS.gene41598.t1 | MTR_3g465410 | 41.844 | 141 | 82 | 0 | 29 | 169 | 1 | 141 | 9.71e-32 | 114 |
| MS.gene41598.t1 | MTR_2g035580 | 42.767 | 159 | 90 | 1 | 1 | 159 | 1 | 158 | 3.39e-30 | 110 |
| MS.gene41598.t1 | MTR_4g032290 | 41.667 | 156 | 91 | 0 | 1 | 156 | 1 | 156 | 3.79e-29 | 110 |
| MS.gene41598.t1 | MTR_2g035610 | 45.455 | 121 | 66 | 0 | 1 | 121 | 1 | 121 | 4.02e-28 | 103 |
| MS.gene41598.t1 | MTR_3g466830 | 35.849 | 159 | 101 | 1 | 3 | 161 | 2 | 159 | 9.69e-28 | 104 |
| MS.gene41598.t1 | MTR_4g032260 | 39.103 | 156 | 95 | 0 | 1 | 156 | 1 | 156 | 1.38e-26 | 101 |
| MS.gene41598.t1 | MTR_3g466890 | 33.758 | 157 | 103 | 1 | 3 | 159 | 2 | 157 | 3.57e-26 | 100 |
| MS.gene41598.t1 | MTR_5g047580 | 33.121 | 157 | 103 | 2 | 1 | 157 | 1 | 155 | 3.68e-25 | 97.4 |
| MS.gene41598.t1 | MTR_1g077390 | 33.951 | 162 | 95 | 4 | 1 | 157 | 1 | 155 | 2.28e-23 | 92.8 |
| MS.gene41598.t1 | MTR_3g466900 | 35.938 | 128 | 81 | 1 | 32 | 159 | 2 | 128 | 1.57e-22 | 89.7 |
| MS.gene41598.t1 | MTR_1g090783 | 35.220 | 159 | 97 | 4 | 3 | 159 | 2 | 156 | 5.40e-22 | 89.4 |
| MS.gene41598.t1 | MTR_1g077300 | 37.342 | 158 | 87 | 4 | 1 | 154 | 1 | 150 | 1.12e-21 | 88.6 |
| MS.gene41598.t1 | MTR_1g090710 | 31.210 | 157 | 107 | 1 | 1 | 157 | 1 | 156 | 3.53e-21 | 87.0 |
| MS.gene41598.t1 | MTR_1g090697 | 32.075 | 159 | 102 | 4 | 1 | 157 | 1 | 155 | 6.83e-21 | 86.3 |
| MS.gene41598.t1 | MTR_3g466930 | 33.594 | 128 | 84 | 1 | 32 | 159 | 2 | 128 | 1.64e-20 | 84.7 |
| MS.gene41598.t1 | MTR_1g084950 | 34.395 | 157 | 101 | 2 | 1 | 157 | 1 | 155 | 1.95e-20 | 85.1 |
| MS.gene41598.t1 | MTR_7g011950 | 35.032 | 157 | 100 | 2 | 1 | 157 | 1 | 155 | 3.16e-20 | 84.7 |
| MS.gene41598.t1 | MTR_1g077320 | 34.810 | 158 | 99 | 3 | 1 | 157 | 1 | 155 | 6.52e-20 | 84.0 |
| MS.gene41598.t1 | MTR_4g028720 | 34.395 | 157 | 101 | 2 | 1 | 157 | 1 | 155 | 9.80e-20 | 83.2 |
| MS.gene41598.t1 | MTR_6g018920 | 26.728 | 217 | 143 | 5 | 1 | 211 | 1 | 207 | 4.86e-18 | 82.4 |
| MS.gene41598.t1 | MTR_4g019670 | 32.479 | 117 | 79 | 0 | 3 | 119 | 6 | 122 | 6.67e-17 | 79.7 |
| MS.gene41598.t1 | MTR_4g028800 | 47.945 | 73 | 36 | 1 | 1 | 73 | 1 | 71 | 1.13e-16 | 72.8 |
| MS.gene41598.t1 | MTR_1g114730 | 30.189 | 159 | 96 | 5 | 1 | 153 | 1 | 150 | 4.55e-16 | 76.6 |
| MS.gene41598.t1 | MTR_7g106510 | 29.915 | 117 | 82 | 0 | 3 | 119 | 6 | 122 | 1.26e-15 | 76.3 |
| MS.gene41598.t1 | MTR_3g093900 | 24.183 | 153 | 115 | 1 | 3 | 155 | 6 | 157 | 9.34e-14 | 70.5 |
| MS.gene41598.t1 | MTR_7g075850 | 23.695 | 249 | 139 | 5 | 1 | 229 | 1 | 218 | 8.31e-13 | 66.6 |
| MS.gene41598.t1 | MTR_6g005440 | 33.981 | 103 | 61 | 3 | 1 | 97 | 1 | 102 | 1.49e-12 | 66.2 |
| MS.gene41598.t1 | MTR_8g033270 | 25.764 | 229 | 148 | 9 | 1 | 226 | 1 | 210 | 3.14e-12 | 64.7 |
| MS.gene41598.t1 | MTR_5g047560 | 26.752 | 157 | 97 | 3 | 1 | 157 | 1 | 139 | 3.72e-12 | 62.4 |
| MS.gene41598.t1 | MTR_4g107170 | 23.626 | 182 | 125 | 5 | 1 | 177 | 1 | 173 | 7.88e-12 | 63.9 |
| MS.gene41598.t1 | MTR_1g054265 | 52.083 | 48 | 23 | 0 | 1 | 48 | 1 | 48 | 3.60e-11 | 60.5 |
| MS.gene41598.t1 | MTR_6g005450 | 28.571 | 126 | 83 | 3 | 1 | 120 | 1 | 125 | 4.38e-11 | 62.4 |
| MS.gene41598.t1 | MTR_5g021270 | 29.375 | 160 | 88 | 4 | 1 | 153 | 1 | 142 | 4.72e-11 | 61.2 |
| MS.gene41598.t1 | MTR_5g021270 | 29.375 | 160 | 88 | 4 | 1 | 153 | 1 | 142 | 5.26e-11 | 61.2 |
| MS.gene41598.t1 | MTR_7g055790 | 33.945 | 109 | 54 | 2 | 1 | 109 | 59 | 149 | 5.66e-11 | 59.7 |
| MS.gene41598.t1 | MTR_2g049610 | 23.669 | 169 | 117 | 5 | 1 | 168 | 1 | 158 | 7.83e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41598.t1 | AT3G05860 | 36.649 | 191 | 106 | 4 | 1 | 189 | 1 | 178 | 2.61e-29 | 109 |
| MS.gene41598.t1 | AT3G05860 | 34.921 | 189 | 115 | 3 | 1 | 187 | 1 | 183 | 2.86e-29 | 110 |
| MS.gene41598.t1 | AT3G05860 | 36.649 | 191 | 106 | 4 | 1 | 189 | 1 | 178 | 4.64e-29 | 110 |
| MS.gene41598.t1 | AT5G48670 | 43.226 | 155 | 87 | 1 | 1 | 155 | 1 | 154 | 2.29e-28 | 110 |
| MS.gene41598.t1 | AT1G65300 | 32.579 | 221 | 136 | 5 | 3 | 211 | 2 | 221 | 4.52e-26 | 103 |
| MS.gene41598.t1 | AT1G65330 | 43.478 | 115 | 65 | 0 | 3 | 117 | 2 | 116 | 2.00e-24 | 98.6 |
| MS.gene41598.t1 | AT5G26650 | 32.836 | 201 | 110 | 6 | 4 | 202 | 2 | 179 | 5.60e-23 | 96.3 |
| MS.gene41598.t1 | AT5G27960 | 29.082 | 196 | 127 | 3 | 4 | 187 | 2 | 197 | 4.15e-22 | 93.2 |
| MS.gene41598.t1 | AT2G28700 | 34.815 | 135 | 85 | 1 | 1 | 135 | 1 | 132 | 3.84e-20 | 87.8 |
| MS.gene41598.t1 | AT5G27810 | 43.820 | 89 | 50 | 0 | 29 | 117 | 1 | 89 | 1.13e-18 | 79.3 |
| MS.gene41598.t1 | AT5G26630 | 33.758 | 157 | 99 | 2 | 1 | 155 | 1 | 154 | 1.59e-18 | 81.6 |
| MS.gene41598.t1 | AT1G31640 | 36.752 | 117 | 69 | 2 | 3 | 117 | 2 | 115 | 8.15e-18 | 82.4 |
| MS.gene41598.t1 | AT5G26580 | 27.237 | 257 | 148 | 9 | 1 | 232 | 1 | 243 | 4.54e-17 | 79.7 |
| MS.gene41598.t1 | AT1G31630 | 33.913 | 115 | 75 | 1 | 3 | 117 | 2 | 115 | 5.32e-17 | 79.3 |
| MS.gene41598.t1 | AT1G22590 | 33.628 | 113 | 75 | 0 | 1 | 113 | 1 | 113 | 1.19e-16 | 75.1 |
| MS.gene41598.t1 | AT5G55690 | 30.000 | 160 | 89 | 5 | 1 | 153 | 1 | 144 | 8.48e-15 | 72.4 |
| MS.gene41598.t1 | AT5G55690 | 30.000 | 160 | 89 | 5 | 1 | 153 | 1 | 144 | 8.48e-15 | 72.4 |
| MS.gene41598.t1 | AT5G06500 | 27.673 | 159 | 107 | 2 | 1 | 156 | 1 | 154 | 1.27e-14 | 71.6 |
| MS.gene41598.t1 | AT2G03060 | 31.818 | 132 | 76 | 3 | 1 | 132 | 1 | 118 | 2.27e-13 | 69.3 |
| MS.gene41598.t1 | AT2G03060 | 31.818 | 132 | 76 | 3 | 1 | 132 | 1 | 118 | 2.27e-13 | 69.3 |
| MS.gene41598.t1 | AT2G03060 | 31.818 | 132 | 76 | 3 | 1 | 132 | 1 | 118 | 2.27e-13 | 69.3 |
| MS.gene41598.t1 | AT2G03060 | 31.818 | 132 | 76 | 3 | 1 | 132 | 1 | 118 | 2.42e-13 | 69.3 |
| MS.gene41598.t1 | AT2G45650 | 34.545 | 110 | 69 | 3 | 1 | 109 | 1 | 108 | 6.13e-11 | 61.2 |
| MS.gene41598.t1 | AT1G69540 | 35.577 | 104 | 59 | 2 | 1 | 104 | 1 | 96 | 7.27e-11 | 61.6 |
| MS.gene41598.t1 | AT2G40210 | 33.000 | 100 | 67 | 0 | 1 | 100 | 1 | 100 | 7.79e-11 | 61.6 |
| MS.gene41598.t1 | AT1G69540 | 35.577 | 104 | 59 | 2 | 1 | 104 | 1 | 96 | 9.22e-11 | 61.6 |
Find 54 sgRNAs with CRISPR-Local
Find 111 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGAGACTAACATGAATTA+TGG | 0.238809 | 3.1:+49973059 | MS.gene41598:CDS |
| TGTTGGATCTATATAGCTTT+TGG | 0.260618 | 3.1:+49972691 | MS.gene41598:CDS |
| GATTTCGACCCAAATGGATT+TGG | 0.290310 | 3.1:+49973152 | MS.gene41598:CDS |
| GCCCATGAGCAGGTTGTAAA+TGG | 0.293188 | 3.1:+49972924 | MS.gene41598:CDS |
| TTACAACCTGCTCATGGGCT+TGG | 0.336276 | 3.1:-49972920 | None:intergenic |
| ACCATGGTCAAGCAGAAGTT+TGG | 0.357178 | 3.1:+49972595 | MS.gene41598:CDS |
| TAGATTGATCCAAATCCATT+TGG | 0.359545 | 3.1:-49973161 | None:intergenic |
| TGCTTTCTCATACTTCTCTC+TGG | 0.372187 | 3.1:-49972733 | None:intergenic |
| TACAACCTGCTCATGGGCTT+GGG | 0.383623 | 3.1:-49972919 | None:intergenic |
| TATAAAGGATGGAGATTTGT+TGG | 0.386723 | 3.1:+49972956 | MS.gene41598:CDS |
| AAATGGAGCTGAAGCTATAA+AGG | 0.393018 | 3.1:+49972941 | MS.gene41598:CDS |
| TTCAATAGGTATAATGAAGA+AGG | 0.408359 | 3.1:+49972515 | MS.gene41598:intron |
| TAATCAGAGGTTGGATTCAA+TGG | 0.415635 | 3.1:+49972893 | MS.gene41598:CDS |
| GAAGTATGAGAAAGCAATGA+TGG | 0.430824 | 3.1:+49972740 | MS.gene41598:CDS |
| AGATTGATCCAAATCCATTT+GGG | 0.442780 | 3.1:-49973160 | None:intergenic |
| GAAGTTTGGCCATCCGTGAT+AGG | 0.452317 | 3.1:+49972609 | MS.gene41598:CDS |
| CTCCATTTACAACCTGCTCA+TGG | 0.464952 | 3.1:-49972926 | None:intergenic |
| GAGGTATGTGTAATAATCTA+TGG | 0.465342 | 3.1:+49972567 | MS.gene41598:CDS |
| AATGAATTGAGCACCCTTTG+TGG | 0.480151 | 3.1:+49972540 | MS.gene41598:CDS |
| ATGAATTGAGCACCCTTTGT+GGG | 0.482929 | 3.1:+49972541 | MS.gene41598:CDS |
| AAGTGATGAGCAACTACCTA+TGG | 0.489610 | 3.1:+49973088 | MS.gene41598:CDS |
| GAAGGAAGTTAATCAGAGGT+TGG | 0.490639 | 3.1:+49972884 | MS.gene41598:CDS |
| TCAAAATCAAAATCATCAAA+TGG | 0.490798 | 3.1:-49973125 | None:intergenic |
| TTTAATTGATGACAATATGA+AGG | 0.493575 | 3.1:+49972866 | MS.gene41598:CDS |
| GAGCACCCTTTGTGGGGTAG+AGG | 0.494310 | 3.1:+49972548 | MS.gene41598:CDS |
| TTTGAGCTTCTTTCTGCCCA+TGG | 0.497356 | 3.1:-49971163 | None:intergenic |
| ACATAATCAATAAGTCGAAA+CGG | 0.519099 | 3.1:+49971193 | MS.gene41598:CDS |
| TCCATTTACAACCTGCTCAT+GGG | 0.519104 | 3.1:-49972925 | None:intergenic |
| CCTACTCGTAACTATAATGT+TGG | 0.540983 | 3.1:+49972807 | MS.gene41598:CDS |
| AGGAGATACACGGGATAACA+TGG | 0.551769 | 3.1:+49973013 | MS.gene41598:CDS |
| ACATACCTCTACCCCACAAA+GGG | 0.555523 | 3.1:-49972553 | None:intergenic |
| GGTAACCCAAGCCCATGAGC+AGG | 0.557566 | 3.1:+49972914 | MS.gene41598:CDS |
| GGAGCTGAAGCTATAAAGGA+TGG | 0.563914 | 3.1:+49972945 | MS.gene41598:CDS |
| CGCTGAGTGGAGGAGATACA+CGG | 0.569700 | 3.1:+49973003 | MS.gene41598:CDS |
| GCCAAACTTCTGCTTGACCA+TGG | 0.570779 | 3.1:-49972596 | None:intergenic |
| TCATGTTAGTCTCATAACCA+TGG | 0.584822 | 3.1:-49973052 | None:intergenic |
| CATGTTAGTCTCATAACCAT+GGG | 0.600840 | 3.1:-49973051 | None:intergenic |
| GCTCAAGTGCCGCTGAGTGG+AGG | 0.602451 | 3.1:+49972993 | MS.gene41598:CDS |
| AATCATCAAATGGTGGCATG+AGG | 0.619303 | 3.1:-49973115 | None:intergenic |
| ATTGCTCAAGTGCCGCTGAG+TGG | 0.623375 | 3.1:+49972990 | MS.gene41598:CDS |
| CACACGTTCTAGTCCTATCA+CGG | 0.627981 | 3.1:-49972622 | None:intergenic |
| AAATCAAAATCATCAAATGG+TGG | 0.629108 | 3.1:-49973122 | None:intergenic |
| CACATACCTCTACCCCACAA+AGG | 0.629470 | 3.1:-49972554 | None:intergenic |
| TACACGGGATAACATGGATG+AGG | 0.629602 | 3.1:+49973019 | MS.gene41598:CDS |
| CGTTCTAGTCCTATCACGGA+TGG | 0.630409 | 3.1:-49972618 | None:intergenic |
| TGAATTGAGCACCCTTTGTG+GGG | 0.632793 | 3.1:+49972542 | MS.gene41598:CDS |
| CCAACATTATAGTTACGAGT+AGG | 0.633928 | 3.1:-49972807 | None:intergenic |
| ATAATCTATGGTGAAAACCA+TGG | 0.637538 | 3.1:+49972579 | MS.gene41598:CDS |
| AATCAATAAGTCGAAACGGA+TGG | 0.645843 | 3.1:+49971197 | MS.gene41598:CDS |
| GGTGGCATGAGGAAGTCCAT+AGG | 0.659527 | 3.1:-49973104 | None:intergenic |
| ATATGAAGGAAGTTAATCAG+AGG | 0.681452 | 3.1:+49972880 | MS.gene41598:CDS |
| GATGAGGTTGCTGATACCCA+TGG | 0.682185 | 3.1:+49973035 | MS.gene41598:CDS |
| GCTGAGTGGAGGAGATACAC+GGG | 0.698908 | 3.1:+49973004 | MS.gene41598:CDS |
| CGTGTATCTCCTCCACTCAG+CGG | 0.724307 | 3.1:-49973002 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTATTTATTTATAA+TGG | - | chr3.1:49971481-49971500 | None:intergenic | 0.0% |
| !! | CATACAAAATATAATATTAT+TGG | - | chr3.1:49972084-49972103 | None:intergenic | 10.0% |
| !!! | ATTGTTTTTATTATACAATT+AGG | + | chr3.1:49971572-49971591 | MS.gene41598:intron | 10.0% |
| !!! | TAAATTTTTTTATTTGATTC+GGG | - | chr3.1:49971790-49971809 | None:intergenic | 10.0% |
| !!! | TTATATATATGTTTTTCAAT+AGG | + | chr3.1:49972501-49972520 | MS.gene41598:intron | 10.0% |
| !!! | TTATATATTTATTTTGAAAG+AGG | - | chr3.1:49971920-49971939 | None:intergenic | 10.0% |
| !!! | TTGTTTTTATTATACAATTA+GGG | + | chr3.1:49971573-49971592 | MS.gene41598:intron | 10.0% |
| !!! | TTTTTATCTTCAAAATAATA+GGG | - | chr3.1:49971626-49971645 | None:intergenic | 10.0% |
| !!! | TTTTTTATCTTCAAAATAAT+AGG | - | chr3.1:49971627-49971646 | None:intergenic | 10.0% |
| !! | AAAATTATTACTGCTATTAA+TGG | + | chr3.1:49971706-49971725 | MS.gene41598:intron | 15.0% |
| !! | AAATGGAAAAAATAAAATGT+TGG | + | chr3.1:49972191-49972210 | MS.gene41598:intron | 15.0% |
| !! | AAATTATATATGACTGAATA+GGG | - | chr3.1:49972483-49972502 | None:intergenic | 15.0% |
| !! | AATAAAAAACATCAAAATCA+TGG | - | chr3.1:49972224-49972243 | None:intergenic | 15.0% |
| !! | CATATAAAATCAATTATTGT+TGG | + | chr3.1:49971833-49971852 | MS.gene41598:intron | 15.0% |
| !! | TAAATTATATATGACTGAAT+AGG | - | chr3.1:49972484-49972503 | None:intergenic | 15.0% |
| !! | TAATTAAAATCTTTGATCTT+CGG | + | chr3.1:49971336-49971355 | MS.gene41598:intron | 15.0% |
| !!! | ATCAAAGATTTTAATTACAA+TGG | - | chr3.1:49971333-49971352 | None:intergenic | 15.0% |
| !!! | ATCTTTCATTTTTTCAAAAA+CGG | + | chr3.1:49971735-49971754 | MS.gene41598:intron | 15.0% |
| !!! | TCAAAGATTTTAATTACAAT+GGG | - | chr3.1:49971332-49971351 | None:intergenic | 15.0% |
| !! | AAAATAATAGGGTAAATCAT+TGG | - | chr3.1:49971615-49971634 | None:intergenic | 20.0% |
| !! | AAAATTTATCCAAACATAAG+AGG | - | chr3.1:49972455-49972474 | None:intergenic | 20.0% |
| !! | AGATAAAAAAAGTAAAATCG+TGG | + | chr3.1:49971637-49971656 | MS.gene41598:intron | 20.0% |
| !! | ATAAAAAAATTGCACTTGTT+TGG | + | chr3.1:49972304-49972323 | MS.gene41598:intron | 20.0% |
| !! | TCAAAATCAAAATCATCAAA+TGG | - | chr3.1:49973128-49973147 | None:intergenic | 20.0% |
| !!! | ATAAGTTTTATAGTTACCTT+GGG | - | chr3.1:49971369-49971388 | None:intergenic | 20.0% |
| !!! | ATCATTTTATGAAAACTTCT+AGG | - | chr3.1:49972059-49972078 | None:intergenic | 20.0% |
| !!! | GATGAATATTTTTTCTACTT+TGG | - | chr3.1:49971532-49971551 | None:intergenic | 20.0% |
| !!! | TATAAGTTTTATAGTTACCT+TGG | - | chr3.1:49971370-49971389 | None:intergenic | 20.0% |
| !!! | TCTTTCATTTTTTCAAAAAC+GGG | + | chr3.1:49971736-49971755 | MS.gene41598:intron | 20.0% |
| !!! | TTGATAAAATGTTAAGTTGT+TGG | + | chr3.1:49972252-49972271 | MS.gene41598:intron | 20.0% |
| !!! | TTTAATTGATGACAATATGA+AGG | + | chr3.1:49972866-49972885 | MS.gene41598:CDS | 20.0% |
| ! | AAATCAAAATCATCAAATGG+TGG | - | chr3.1:49973125-49973144 | None:intergenic | 25.0% |
| ! | AATAGAAAACCTCTTATGTT+TGG | + | chr3.1:49972443-49972462 | MS.gene41598:intron | 25.0% |
| ! | ACATAATCAATAAGTCGAAA+CGG | + | chr3.1:49971193-49971212 | MS.gene41598:CDS | 25.0% |
| ! | ACATTCAAAAAAAGAACAGA+AGG | + | chr3.1:49971222-49971241 | MS.gene41598:CDS | 25.0% |
| ! | ATGTAACTATTTCATCAACA+TGG | - | chr3.1:49971450-49971469 | None:intergenic | 25.0% |
| ! | GCATGATTTAATTGAAACTA+AGG | - | chr3.1:49971264-49971283 | None:intergenic | 25.0% |
| ! | TAAAAAGAATGAAAGTCTTG+TGG | - | chr3.1:49971670-49971689 | None:intergenic | 25.0% |
| ! | TACTTCGTAAAAAATGTTTG+AGG | + | chr3.1:49972349-49972368 | MS.gene41598:intron | 25.0% |
| ! | TATGAGACTAACATGAATTA+TGG | + | chr3.1:49973059-49973078 | MS.gene41598:CDS | 25.0% |
| ! | TTAGATATGAATACCTATAG+CGG | + | chr3.1:49972155-49972174 | MS.gene41598:intron | 25.0% |
| ! | TTCAATAGGTATAATGAAGA+AGG | + | chr3.1:49972515-49972534 | MS.gene41598:intron | 25.0% |
| !!! | ACGAAAAATTAGTTTTACAG+TGG | - | chr3.1:49971404-49971423 | None:intergenic | 25.0% |
| !!! | CGAAAAATTAGTTTTACAGT+GGG | - | chr3.1:49971403-49971422 | None:intergenic | 25.0% |
| !!! | GAAAAATTAGTTTTACAGTG+GGG | - | chr3.1:49971402-49971421 | None:intergenic | 25.0% |
| AGATTGATCCAAATCCATTT+GGG | - | chr3.1:49973163-49973182 | None:intergenic | 30.0% | |
| ATAATAGGGTAAATCATTGG+TGG | - | chr3.1:49971612-49971631 | None:intergenic | 30.0% | |
| ATAATCTATGGTGAAAACCA+TGG | + | chr3.1:49972579-49972598 | MS.gene41598:CDS | 30.0% | |
| ATATGAAGGAAGTTAATCAG+AGG | + | chr3.1:49972880-49972899 | MS.gene41598:CDS | 30.0% | |
| CCAAAGAAACAAAAAGATGT+TGG | + | chr3.1:49972674-49972693 | MS.gene41598:CDS | 30.0% | |
| CTATAAAACTTATACCCTTG+AGG | + | chr3.1:49971376-49971395 | MS.gene41598:intron | 30.0% | |
| GAGGTATGTGTAATAATCTA+TGG | + | chr3.1:49972567-49972586 | MS.gene41598:CDS | 30.0% | |
| TAGATTGATCCAAATCCATT+TGG | - | chr3.1:49973164-49973183 | None:intergenic | 30.0% | |
| TATAAAGGATGGAGATTTGT+TGG | + | chr3.1:49972956-49972975 | MS.gene41598:CDS | 30.0% | |
| ! | TATATAGCTTTTGGATGCAA+AGG | + | chr3.1:49972700-49972719 | MS.gene41598:CDS | 30.0% |
| ! | TCGTAAAAAATGTTTGAGGT+TGG | + | chr3.1:49972353-49972372 | MS.gene41598:intron | 30.0% |
| ! | TGTTGGATCTATATAGCTTT+TGG | + | chr3.1:49972691-49972710 | MS.gene41598:CDS | 30.0% |
| !! | CCAACATCTTTTTGTTTCTT+TGG | - | chr3.1:49972677-49972696 | None:intergenic | 30.0% |
| AAATGGAGCTGAAGCTATAA+AGG | + | chr3.1:49972941-49972960 | MS.gene41598:CDS | 35.0% | |
| AATCAATAAGTCGAAACGGA+TGG | + | chr3.1:49971197-49971216 | MS.gene41598:CDS | 35.0% | |
| ATATGCACTCTCGTTCAATT+TGG | + | chr3.1:49971996-49972015 | MS.gene41598:intron | 35.0% | |
| CCAACATTATAGTTACGAGT+AGG | - | chr3.1:49972810-49972829 | None:intergenic | 35.0% | |
| CCTACTCGTAACTATAATGT+TGG | + | chr3.1:49972807-49972826 | MS.gene41598:CDS | 35.0% | |
| GAAGTATGAGAAAGCAATGA+TGG | + | chr3.1:49972740-49972759 | MS.gene41598:CDS | 35.0% | |
| TAATCAGAGGTTGGATTCAA+TGG | + | chr3.1:49972893-49972912 | MS.gene41598:CDS | 35.0% | |
| ! | CATGTTAGTCTCATAACCAT+GGG | - | chr3.1:49973054-49973073 | None:intergenic | 35.0% |
| ! | TCATGTTAGTCTCATAACCA+TGG | - | chr3.1:49973055-49973074 | None:intergenic | 35.0% |
| ! | TTTTCAAAAACGGGCAAAGT+CGG | + | chr3.1:49971745-49971764 | MS.gene41598:intron | 35.0% |
| ! | TTTTCGTCGACATACATGAT+TGG | + | chr3.1:49971417-49971436 | MS.gene41598:intron | 35.0% |
| !!! | GATTTTGATTTCGACCCAAA+TGG | + | chr3.1:49973146-49973165 | MS.gene41598:CDS | 35.0% |
| AAGTGATGAGCAACTACCTA+TGG | + | chr3.1:49973088-49973107 | MS.gene41598:CDS | 40.0% | |
| AATCATCAAATGGTGGCATG+AGG | - | chr3.1:49973118-49973137 | None:intergenic | 40.0% | |
| AATGAATTGAGCACCCTTTG+TGG | + | chr3.1:49972540-49972559 | MS.gene41598:CDS | 40.0% | |
| ATGAATTGAGCACCCTTTGT+GGG | + | chr3.1:49972541-49972560 | MS.gene41598:CDS | 40.0% | |
| CACTCTCGTTCAATTTGGTT+TGG | + | chr3.1:49972001-49972020 | MS.gene41598:intron | 40.0% | |
| GAAGGAAGTTAATCAGAGGT+TGG | + | chr3.1:49972884-49972903 | MS.gene41598:CDS | 40.0% | |
| TCCATTTACAACCTGCTCAT+GGG | - | chr3.1:49972928-49972947 | None:intergenic | 40.0% | |
| TGCTTTCTCATACTTCTCTC+TGG | - | chr3.1:49972736-49972755 | None:intergenic | 40.0% | |
| ! | GATTTCGACCCAAATGGATT+TGG | + | chr3.1:49973152-49973171 | MS.gene41598:CDS | 40.0% |
| ACATACCTCTACCCCACAAA+GGG | - | chr3.1:49972556-49972575 | None:intergenic | 45.0% | |
| ACCATGGTCAAGCAGAAGTT+TGG | + | chr3.1:49972595-49972614 | MS.gene41598:CDS | 45.0% | |
| AGGAGATACACGGGATAACA+TGG | + | chr3.1:49973013-49973032 | MS.gene41598:CDS | 45.0% | |
| CACACGTTCTAGTCCTATCA+CGG | - | chr3.1:49972625-49972644 | None:intergenic | 45.0% | |
| CTCCATTTACAACCTGCTCA+TGG | - | chr3.1:49972929-49972948 | None:intergenic | 45.0% | |
| GCGGTCACTGTCATTACAAA+TGG | + | chr3.1:49972174-49972193 | MS.gene41598:intron | 45.0% | |
| GGAGCTGAAGCTATAAAGGA+TGG | + | chr3.1:49972945-49972964 | MS.gene41598:CDS | 45.0% | |
| GTAATGACAGTGACCGCTAT+AGG | - | chr3.1:49972171-49972190 | None:intergenic | 45.0% | |
| TACACGGGATAACATGGATG+AGG | + | chr3.1:49973019-49973038 | MS.gene41598:CDS | 45.0% | |
| TGAATTGAGCACCCTTTGTG+GGG | + | chr3.1:49972542-49972561 | MS.gene41598:CDS | 45.0% | |
| !! | TCAAATAAAAAAATTTAAAT+TGG | + | chr3.1:49971793-49971812 | MS.gene41598:intron | 5.0% |
| !!! | TTAAATTTTTTTATTTGATT+CGG | - | chr3.1:49971791-49971810 | None:intergenic | 5.0% |
| CACATACCTCTACCCCACAA+AGG | - | chr3.1:49972557-49972576 | None:intergenic | 50.0% | |
| CGTTCTAGTCCTATCACGGA+TGG | - | chr3.1:49972621-49972640 | None:intergenic | 50.0% | |
| GAAGTTTGGCCATCCGTGAT+AGG | + | chr3.1:49972609-49972628 | MS.gene41598:CDS | 50.0% | |
| GATGAGGTTGCTGATACCCA+TGG | + | chr3.1:49973035-49973054 | MS.gene41598:CDS | 50.0% | |
| GCCAAACTTCTGCTTGACCA+TGG | - | chr3.1:49972599-49972618 | None:intergenic | 50.0% | |
| GCCCATGAGCAGGTTGTAAA+TGG | + | chr3.1:49972924-49972943 | MS.gene41598:CDS | 50.0% | |
| TACAACCTGCTCATGGGCTT+GGG | - | chr3.1:49972922-49972941 | None:intergenic | 50.0% | |
| TCAAAAACGGGCAAAGTCGG+TGG | + | chr3.1:49971748-49971767 | MS.gene41598:intron | 50.0% | |
| TTACAACCTGCTCATGGGCT+TGG | - | chr3.1:49972923-49972942 | None:intergenic | 50.0% | |
| ! | AGTTTTACAGTGGGGCCTCA+AGG | - | chr3.1:49971394-49971413 | None:intergenic | 50.0% |
| ! | GTTTTACAGTGGGGCCTCAA+GGG | - | chr3.1:49971393-49971412 | None:intergenic | 50.0% |
| CGCTGAGTGGAGGAGATACA+CGG | + | chr3.1:49973003-49973022 | MS.gene41598:CDS | 55.0% | |
| CGTGTATCTCCTCCACTCAG+CGG | - | chr3.1:49973005-49973024 | None:intergenic | 55.0% | |
| GCTGAGTGGAGGAGATACAC+GGG | + | chr3.1:49973004-49973023 | MS.gene41598:CDS | 55.0% | |
| GGTGGCATGAGGAAGTCCAT+AGG | - | chr3.1:49973107-49973126 | None:intergenic | 55.0% | |
| ! | ATTGCTCAAGTGCCGCTGAG+TGG | + | chr3.1:49972990-49973009 | MS.gene41598:CDS | 55.0% |
| ! | GATCTTCGGTGTGTGTCCCA+AGG | + | chr3.1:49971350-49971369 | MS.gene41598:intron | 55.0% |
| GAGCACCCTTTGTGGGGTAG+AGG | + | chr3.1:49972548-49972567 | MS.gene41598:CDS | 60.0% | |
| GGTAACCCAAGCCCATGAGC+AGG | + | chr3.1:49972914-49972933 | MS.gene41598:CDS | 60.0% | |
| ! | GCTCAAGTGCCGCTGAGTGG+AGG | + | chr3.1:49972993-49973012 | MS.gene41598:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 49971165 | 49973184 | 49971165 | ID=MS.gene41598 |
| chr3.1 | mRNA | 49971165 | 49973184 | 49971165 | ID=MS.gene41598.t1;Parent=MS.gene41598 |
| chr3.1 | exon | 49971165 | 49971243 | 49971165 | ID=MS.gene41598.t1.exon1;Parent=MS.gene41598.t1 |
| chr3.1 | CDS | 49971165 | 49971243 | 49971165 | ID=cds.MS.gene41598.t1;Parent=MS.gene41598.t1 |
| chr3.1 | exon | 49972523 | 49973184 | 49972523 | ID=MS.gene41598.t1.exon2;Parent=MS.gene41598.t1 |
| chr3.1 | CDS | 49972523 | 49973184 | 49972523 | ID=cds.MS.gene41598.t1;Parent=MS.gene41598.t1 |
| Gene Sequence |
| Protein sequence |
