AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41608

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41608.t1 MTR_3g098070 63.636 275 56 1 14 244 16 290 4.98e-123 354
MS.gene41608.t1 MTR_3g098070 63.636 275 56 1 14 244 16 290 1.71e-121 355
MS.gene41608.t1 MTR_8g095440 58.182 275 71 1 14 244 17 291 9.52e-109 320
MS.gene41608.t1 MTR_8g095440 58.182 275 71 1 14 244 17 291 1.98e-107 320
MS.gene41608.t1 MTR_3g098090 58.182 275 71 1 14 244 19 293 1.96e-105 315
MS.gene41608.t1 MTR_1g096490 54.015 274 82 1 15 244 18 291 8.12e-98 295
MS.gene41608.t1 MTR_1g041150 51.460 274 89 1 15 244 106 379 8.17e-92 282
MS.gene41608.t1 MTR_5g099240 50.000 278 95 1 11 244 8 285 7.71e-90 274
MS.gene41608.t1 MTR_5g099240 50.000 278 95 1 11 244 80 357 6.02e-89 274
MS.gene41608.t1 MTR_5g092810 47.782 293 109 1 10 258 75 367 2.89e-87 269
MS.gene41608.t1 MTR_1g054865 48.571 280 100 1 6 241 140 419 1.43e-86 269
MS.gene41608.t1 MTR_1g055255 49.306 288 102 1 15 258 112 399 6.55e-86 267
MS.gene41608.t1 MTR_3g051770 48.611 288 97 2 7 243 57 344 2.05e-85 265
MS.gene41608.t1 MTR_5g092815 49.275 276 96 1 21 252 85 360 4.79e-85 259
MS.gene41608.t1 MTR_7g106730 47.331 281 104 1 23 259 84 364 9.02e-85 259
MS.gene41608.t1 MTR_4g132070 49.814 269 89 2 17 241 83 349 1.29e-84 262
MS.gene41608.t1 MTR_0028s0170 47.703 283 100 2 10 244 57 339 5.89e-84 261
MS.gene41608.t1 MTR_5g089320 46.643 283 103 2 10 244 47 329 7.07e-83 258
MS.gene41608.t1 MTR_1g052530 45.051 293 112 2 5 253 35 322 1.75e-82 253
MS.gene41608.t1 MTR_4g107490 49.446 271 93 1 27 253 73 343 2.27e-82 257
MS.gene41608.t1 MTR_7g091890 46.494 271 101 1 27 253 58 328 3.93e-82 253
MS.gene41608.t1 MTR_1g052530 45.051 293 112 2 5 253 35 322 1.34e-81 254
MS.gene41608.t1 MTR_1g026190 47.535 284 99 3 17 252 70 351 2.37e-81 254
MS.gene41608.t1 MTR_7g091890 46.494 271 101 1 27 253 58 328 7.97e-81 253
MS.gene41608.t1 MTR_7g106710 47.744 266 95 1 23 244 131 396 3.78e-79 245
MS.gene41608.t1 MTR_8g099095 46.099 282 108 1 21 258 60 341 3.91e-79 248
MS.gene41608.t1 MTR_7g068710 45.907 281 108 1 5 241 34 314 4.09e-79 248
MS.gene41608.t1 MTR_7g106710 47.744 266 95 1 23 244 131 396 1.36e-78 246
MS.gene41608.t1 MTR_7g106710 47.744 266 95 1 23 244 131 396 1.17e-77 245
MS.gene41608.t1 MTR_7g106710 47.909 263 93 1 23 241 131 393 2.16e-77 245
MS.gene41608.t1 MTR_5g009830 45.804 286 109 2 5 244 43 328 8.74e-73 229
MS.gene41608.t1 MTR_5g009830 45.804 286 109 2 5 244 43 328 5.19e-72 229
MS.gene41608.t1 MTR_4g066660 44.788 259 99 1 27 241 72 330 6.75e-71 227
MS.gene41608.t1 MTR_4g132040 42.424 297 126 2 7 258 75 371 6.12e-68 219
MS.gene41608.t1 MTR_5g022030 37.546 269 122 2 19 241 91 359 1.52e-57 192
MS.gene41608.t1 MTR_5g022030 37.546 269 122 2 19 241 91 359 2.69e-57 192
MS.gene41608.t1 MTR_1g101630 40.076 262 113 1 27 244 41 302 2.53e-56 188
MS.gene41608.t1 MTR_3g099767 35.926 270 125 2 27 255 112 374 2.04e-52 177
MS.gene41608.t1 MTR_5g017830 35.165 273 125 4 19 241 126 396 6.07e-50 172
MS.gene41608.t1 MTR_8g079790 35.088 285 125 5 19 250 117 394 6.46e-49 170
MS.gene41608.t1 MTR_3g092230 34.420 276 133 3 19 246 130 405 1.22e-47 166
MS.gene41608.t1 MTR_7g118020 34.058 276 130 4 19 244 136 409 2.61e-46 163
MS.gene41608.t1 MTR_4g086660 34.317 271 130 3 19 241 129 399 2.67e-46 163
MS.gene41608.t1 MTR_7g089480 34.182 275 129 4 19 243 133 405 7.26e-46 162
MS.gene41608.t1 MTR_1g080020 34.109 258 127 3 27 242 9 265 1.61e-44 151
MS.gene41608.t1 MTR_1g026075 53.600 125 52 1 12 136 65 183 1.32e-39 137
MS.gene41608.t1 MTR_7g116390 33.588 262 126 6 27 242 16 275 9.66e-39 137
MS.gene41608.t1 MTR_8g043970 28.115 313 145 6 18 250 3 315 3.96e-32 123
MS.gene41608.t1 MTR_6g012990 32.061 262 128 6 23 240 15 270 8.09e-32 120
MS.gene41608.t1 MTR_6g048250 31.439 264 131 6 23 242 15 272 2.23e-31 119
MS.gene41608.t1 MTR_4g131060 30.385 260 129 7 27 240 18 271 4.44e-31 119
MS.gene41608.t1 MTR_6g012990 32.061 262 128 6 23 240 15 270 5.23e-31 120
MS.gene41608.t1 MTR_6g048250 31.086 267 134 6 20 242 12 272 9.95e-31 119
MS.gene41608.t1 MTR_6g048250 31.439 264 131 6 23 242 15 272 1.61e-30 119
MS.gene41608.t1 MTR_5g067150 27.799 259 136 5 27 240 9 261 7.31e-29 112
MS.gene41608.t1 MTR_5g067150 27.799 259 136 5 27 240 9 261 8.39e-29 113
MS.gene41608.t1 MTR_3g110405 27.660 282 153 7 3 244 21 291 8.55e-29 111
MS.gene41608.t1 MTR_5g067150 27.799 259 136 5 27 240 9 261 1.28e-28 113
MS.gene41608.t1 MTR_2g045470 26.923 260 139 5 27 240 20 274 3.27e-28 112
MS.gene41608.t1 MTR_5g088350 29.811 265 135 6 26 244 12 271 4.80e-28 110
MS.gene41608.t1 MTR_4g114670 27.347 245 142 5 27 240 11 250 5.03e-28 111
MS.gene41608.t1 MTR_5g088350 29.811 265 135 6 26 244 12 271 9.97e-28 110
MS.gene41608.t1 MTR_5g088350 29.811 265 135 6 26 244 12 271 2.22e-27 109
MS.gene41608.t1 MTR_3g099920 28.090 267 138 7 20 240 12 270 4.32e-27 109
MS.gene41608.t1 MTR_8g024590 29.845 258 132 6 27 240 17 269 6.58e-27 108
MS.gene41608.t1 MTR_8g040300 26.054 261 150 4 27 247 10 267 8.12e-27 105
MS.gene41608.t1 MTR_3g466400 28.044 271 143 6 27 251 14 278 1.14e-26 107
MS.gene41608.t1 MTR_5g075100 28.077 260 136 5 27 240 23 277 1.15e-26 107
MS.gene41608.t1 MTR_2g049790 28.462 260 135 5 27 240 23 277 1.23e-26 107
MS.gene41608.t1 MTR_4g006970 30.000 260 130 6 27 240 20 273 1.90e-26 107
MS.gene41608.t1 MTR_4g114670 25.969 258 142 5 27 240 11 263 2.13e-26 106
MS.gene41608.t1 MTR_8g035890 26.336 262 150 4 27 248 16 274 2.35e-26 104
MS.gene41608.t1 MTR_4g114670 25.969 258 142 5 27 240 11 263 3.25e-26 106
MS.gene41608.t1 MTR_4g123940 26.394 269 147 5 27 249 26 289 4.58e-25 102
MS.gene41608.t1 MTR_7g072605 27.586 261 137 7 27 240 16 271 8.37e-25 102
MS.gene41608.t1 MTR_4g123940 26.394 269 147 5 27 249 26 289 1.34e-24 102
MS.gene41608.t1 MTR_1g103760 26.820 261 137 6 27 240 12 265 1.75e-24 101
MS.gene41608.t1 MTR_4g019410 26.820 261 142 7 27 241 19 276 2.12e-24 102
MS.gene41608.t1 MTR_4g029020 28.626 262 135 7 25 240 10 265 2.33e-24 101
MS.gene41608.t1 MTR_1g076370 28.897 263 132 6 27 240 20 276 3.36e-24 100
MS.gene41608.t1 MTR_4g019410 26.437 261 143 6 27 241 19 276 3.80e-24 101
MS.gene41608.t1 MTR_1g040875 28.185 259 137 4 27 240 24 278 7.24e-24 99.8
MS.gene41608.t1 MTR_8g024600 28.295 258 136 6 27 240 17 269 1.02e-23 99.4
MS.gene41608.t1 MTR_7g072575 28.409 264 137 6 23 240 8 265 2.84e-23 98.6
MS.gene41608.t1 MTR_5g075060 28.244 262 136 6 25 240 10 265 1.20e-22 96.7
MS.gene41608.t1 MTR_2g016340 25.758 264 144 6 23 240 8 265 1.50e-22 96.3
MS.gene41608.t1 MTR_3g466480 27.692 260 136 6 27 240 21 274 1.63e-22 96.3
MS.gene41608.t1 MTR_8g089975 26.715 277 151 6 27 256 4 275 3.23e-22 94.4
MS.gene41608.t1 MTR_2g006330 24.820 278 157 5 27 257 4 276 1.22e-21 92.8
MS.gene41608.t1 MTR_2g105010 30.385 260 129 6 27 240 14 267 1.30e-21 93.6
MS.gene41608.t1 MTR_3g097320 27.138 269 142 6 27 247 4 266 1.63e-21 92.4
MS.gene41608.t1 MTR_5g064540 29.545 264 132 7 27 242 4 261 1.70e-21 92.0
MS.gene41608.t1 MTR_8g024100 26.316 266 148 5 27 246 15 278 2.34e-21 93.6
MS.gene41608.t1 MTR_1g013700 28.846 260 133 6 27 240 13 266 2.83e-21 92.4
MS.gene41608.t1 MTR_6g012980 30.233 215 100 5 70 240 116 324 2.97e-21 92.4
MS.gene41608.t1 MTR_8g095330 26.119 268 146 5 27 247 5 267 4.79e-21 91.3
MS.gene41608.t1 MTR_4g128820 26.820 261 143 5 27 244 10 265 9.48e-21 91.3
MS.gene41608.t1 MTR_3g086940 25.758 264 144 6 27 243 5 263 3.58e-20 88.6
MS.gene41608.t1 MTR_2g094090 27.473 273 141 8 22 242 114 381 7.44e-18 82.8
MS.gene41608.t1 MTR_2g045470 26.882 186 86 4 101 240 13 194 3.51e-17 80.5
MS.gene41608.t1 MTR_3g072320 26.877 253 137 7 27 236 12 259 4.74e-17 80.5
MS.gene41608.t1 MTR_8g089975 27.638 199 97 3 105 256 1 199 8.22e-17 78.2
MS.gene41608.t1 MTR_2g006330 27.041 196 96 3 105 253 1 196 1.31e-16 77.8
MS.gene41608.t1 MTR_2g016280 26.087 230 141 6 27 240 31 247 1.75e-15 75.9
MS.gene41608.t1 MTR_3g088715 31.132 106 70 2 144 248 29 132 2.01e-13 66.2
MS.gene41608.t1 MTR_5g069000 41.964 112 58 4 137 243 944 1053 2.56e-13 70.1
MS.gene41608.t1 MTR_4g035835 41.964 112 58 4 137 243 940 1049 3.78e-13 69.3
MS.gene41608.t1 MTR_4g094415 26.772 254 136 10 33 241 169 417 5.22e-13 68.6
MS.gene41608.t1 MTR_4g051648 36.607 112 67 3 131 241 154 262 3.57e-12 66.6
MS.gene41608.t1 MTR_2g040150 36.893 103 62 2 144 243 320 422 5.24e-12 65.9
MS.gene41608.t1 MTR_3g104700 38.000 100 59 2 144 240 301 400 7.56e-12 65.1
MS.gene41608.t1 MTR_8g011780 33.654 104 63 2 139 241 245 343 1.83e-11 63.9
MS.gene41608.t1 MTR_7g113490 24.731 279 153 8 30 253 71 347 2.22e-11 63.9
MS.gene41608.t1 MTR_1g075880 39.216 102 57 3 144 241 316 416 3.65e-11 63.2
MS.gene41608.t1 MTR_1g442790 38.235 102 58 3 144 241 310 410 9.36e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41608.t1 AT5G23580 54.704 287 86 1 10 252 5 291 2.27e-102 306
MS.gene41608.t1 AT1G35670 50.847 295 99 2 4 252 1 295 7.08e-95 288
MS.gene41608.t1 AT4G09570 51.211 289 95 2 10 252 6 294 3.88e-94 286
MS.gene41608.t1 AT3G10660 49.832 297 91 2 6 244 151 447 1.97e-93 288
MS.gene41608.t1 AT3G10660 49.832 297 91 2 6 244 151 447 1.97e-93 288
MS.gene41608.t1 AT5G04870 51.661 271 87 1 15 241 138 408 6.03e-93 286
MS.gene41608.t1 AT2G17290 49.825 285 99 1 4 244 62 346 3.51e-90 277
MS.gene41608.t1 AT2G17290 49.825 285 99 1 4 244 62 346 3.51e-90 277
MS.gene41608.t1 AT4G38230 50.000 278 95 1 11 244 8 285 2.29e-89 273
MS.gene41608.t1 AT4G38230 50.000 278 95 1 11 244 8 285 2.29e-89 273
MS.gene41608.t1 AT4G38230 50.000 278 95 1 11 244 38 315 5.47e-89 273
MS.gene41608.t1 AT4G35310 49.640 278 96 1 11 244 81 358 2.52e-88 273
MS.gene41608.t1 AT4G35310 49.640 278 96 1 11 244 81 358 2.52e-88 273
MS.gene41608.t1 AT1G76040 49.438 267 91 1 23 245 108 374 1.05e-87 270
MS.gene41608.t1 AT1G76040 49.438 267 91 1 23 245 108 374 2.59e-87 270
MS.gene41608.t1 AT2G35890 50.000 278 95 1 11 244 116 393 4.28e-87 268
MS.gene41608.t1 AT2G35890 50.000 278 95 1 11 244 116 393 4.28e-87 268
MS.gene41608.t1 AT2G38910 48.905 274 96 1 11 240 118 391 5.39e-87 270
MS.gene41608.t1 AT4G21940 49.057 265 91 1 21 241 96 360 2.56e-85 263
MS.gene41608.t1 AT4G21940 49.057 265 91 1 21 241 96 360 1.08e-84 263
MS.gene41608.t1 AT4G21940 49.057 265 91 1 21 241 96 360 1.45e-84 263
MS.gene41608.t1 AT4G23650 48.252 286 104 1 11 252 62 347 3.39e-84 261
MS.gene41608.t1 AT1G61950 49.248 266 90 1 21 241 92 357 9.72e-84 260
MS.gene41608.t1 AT3G20410 49.807 259 86 1 27 241 91 349 1.49e-83 260
MS.gene41608.t1 AT3G20410 49.807 259 86 1 27 241 91 349 1.49e-83 260
MS.gene41608.t1 AT5G12180 49.618 262 88 1 27 244 73 334 1.75e-83 259
MS.gene41608.t1 AT5G19360 48.905 274 96 1 15 244 56 329 3.31e-83 258
MS.gene41608.t1 AT4G04720 49.434 265 90 1 21 241 74 338 4.45e-83 258
MS.gene41608.t1 AT4G04720 49.434 265 90 1 21 241 74 338 4.45e-83 258
MS.gene41608.t1 AT5G12480 47.232 271 99 1 27 253 59 329 3.09e-82 256
MS.gene41608.t1 AT1G50700 48.649 259 89 1 27 241 73 331 4.90e-81 251
MS.gene41608.t1 AT1G50700 48.649 259 89 1 27 241 73 331 9.64e-81 252
MS.gene41608.t1 AT1G50700 48.649 259 89 1 27 241 73 331 1.47e-80 252
MS.gene41608.t1 AT3G57530 46.125 271 102 1 27 253 63 333 1.93e-80 248
MS.gene41608.t1 AT3G51850 47.232 271 99 1 27 253 54 324 5.97e-80 247
MS.gene41608.t1 AT5G19450 45.956 272 103 1 26 253 56 327 1.18e-79 249
MS.gene41608.t1 AT5G19450 45.956 272 103 1 26 253 56 327 1.18e-79 249
MS.gene41608.t1 AT2G41860 47.253 273 100 1 25 253 52 324 1.56e-79 249
MS.gene41608.t1 AT3G57530 46.125 271 102 1 27 253 63 333 4.29e-79 248
MS.gene41608.t1 AT2G41860 46.886 273 101 1 25 253 52 324 4.42e-79 248
MS.gene41608.t1 AT3G51850 48.649 259 89 1 27 241 54 312 8.77e-79 246
MS.gene41608.t1 AT3G51850 48.649 259 89 1 27 241 54 312 2.50e-78 246
MS.gene41608.t1 AT1G74740 47.232 271 99 1 27 253 59 329 4.36e-77 243
MS.gene41608.t1 AT1G18890 46.494 271 101 1 27 253 63 333 7.04e-75 238
MS.gene41608.t1 AT2G31500 44.788 259 99 1 27 241 66 324 1.56e-70 227
MS.gene41608.t1 AT4G04740 48.571 245 82 1 41 241 83 327 1.27e-69 223
MS.gene41608.t1 AT4G04740 48.571 245 82 1 41 241 83 327 1.39e-69 223
MS.gene41608.t1 AT4G04740 48.571 245 82 1 41 241 83 327 1.39e-69 223
MS.gene41608.t1 AT4G04740 48.571 245 82 1 41 241 83 327 1.39e-69 223
MS.gene41608.t1 AT4G04740 48.571 245 82 1 41 241 83 327 1.39e-69 223
MS.gene41608.t1 AT4G04740 48.571 245 82 1 41 241 83 327 1.39e-69 223
MS.gene41608.t1 AT4G04740 48.571 245 82 1 41 241 83 327 1.39e-69 223
MS.gene41608.t1 AT4G04710 45.247 263 90 4 27 241 36 292 6.26e-64 207
MS.gene41608.t1 AT4G04710 44.444 270 95 4 27 241 36 305 5.27e-63 205
MS.gene41608.t1 AT4G04710 44.444 270 95 4 27 241 36 305 5.27e-63 205
MS.gene41608.t1 AT2G17890 40.520 269 114 2 19 241 100 368 6.83e-62 204
MS.gene41608.t1 AT4G04695 39.858 281 115 4 11 243 18 292 1.28e-59 196
MS.gene41608.t1 AT5G66210 39.033 269 118 2 19 241 54 322 1.86e-59 194
MS.gene41608.t1 AT5G66210 39.033 269 118 2 19 241 54 322 1.86e-59 194
MS.gene41608.t1 AT5G66210 39.033 269 118 2 19 241 54 322 4.42e-59 194
MS.gene41608.t1 AT4G36070 38.290 269 120 2 19 241 63 331 6.82e-59 196
MS.gene41608.t1 AT5G66210 39.033 269 118 2 19 241 54 322 6.84e-59 194
MS.gene41608.t1 AT5G66210 39.033 269 118 2 19 241 54 322 1.34e-58 194
MS.gene41608.t1 AT5G66210 39.033 269 118 2 19 241 54 322 1.34e-58 194
MS.gene41608.t1 AT4G36070 38.290 269 120 2 19 241 63 331 1.63e-58 195
MS.gene41608.t1 AT1G12580 40.541 259 110 1 27 241 44 302 1.03e-57 192
MS.gene41608.t1 AT1G12680 38.148 270 119 2 27 255 107 369 8.37e-57 188
MS.gene41608.t1 AT4G04700 38.710 279 117 3 11 241 18 290 9.16e-57 189
MS.gene41608.t1 AT4G04710 41.445 263 86 5 27 241 36 278 5.24e-52 176
MS.gene41608.t1 AT3G50530 36.000 275 124 5 19 243 140 412 1.04e-48 169
MS.gene41608.t1 AT5G24430 35.401 274 129 3 19 244 135 408 7.65e-47 164
MS.gene41608.t1 AT3G49370 35.766 274 128 3 19 244 134 407 2.24e-46 163
MS.gene41608.t1 AT1G49580 34.317 271 130 3 19 241 142 412 2.85e-45 160
MS.gene41608.t1 AT3G56760 33.212 274 131 4 19 242 116 387 4.29e-45 159
MS.gene41608.t1 AT2G41140 33.212 274 131 4 19 242 115 386 8.25e-45 159
MS.gene41608.t1 AT3G04530 36.015 261 123 4 27 243 11 271 3.22e-44 150
MS.gene41608.t1 AT3G19100 34.397 282 132 5 19 252 136 412 5.97e-44 157
MS.gene41608.t1 AT1G76040 55.833 120 53 0 126 245 17 136 2.71e-43 149
MS.gene41608.t1 AT1G76040 55.833 120 53 0 126 245 17 136 2.71e-43 149
MS.gene41608.t1 AT4G38230 60.748 107 42 0 138 244 35 141 5.40e-43 149
MS.gene41608.t1 AT1G08650 34.363 259 126 3 27 241 15 273 8.10e-43 147
MS.gene41608.t1 AT5G12480 56.034 116 51 0 138 253 120 235 4.42e-42 149
MS.gene41608.t1 AT2G46700 32.857 280 128 4 19 244 135 408 9.19e-42 150
MS.gene41608.t1 AT1G08650 33.716 261 127 4 27 243 15 273 2.89e-39 138
MS.gene41608.t1 AT2G46700 34.091 220 100 2 70 244 8 227 1.47e-36 134
MS.gene41608.t1 AT2G46700 34.091 220 100 2 70 244 8 227 1.47e-36 134
MS.gene41608.t1 AT3G01090 33.208 265 127 6 20 240 12 270 5.06e-32 123
MS.gene41608.t1 AT3G01090 33.208 265 127 6 20 240 12 270 5.06e-32 123
MS.gene41608.t1 AT3G01090 33.208 265 127 6 20 240 35 293 6.70e-32 123
MS.gene41608.t1 AT2G25880 32.301 226 142 5 27 244 25 247 3.18e-31 116
MS.gene41608.t1 AT1G48260 29.740 269 136 5 27 248 11 273 4.33e-30 117
MS.gene41608.t1 AT3G29160 32.171 258 125 6 27 240 20 271 3.46e-29 113
MS.gene41608.t1 AT4G24400 28.517 263 137 5 27 244 9 265 3.70e-29 114
MS.gene41608.t1 AT4G24400 28.517 263 137 5 27 244 9 265 3.77e-29 114
MS.gene41608.t1 AT5G21326 30.000 260 131 5 27 240 13 267 8.10e-29 113
MS.gene41608.t1 AT3G29160 32.171 258 125 6 27 240 20 271 1.86e-28 113
MS.gene41608.t1 AT3G29160 32.171 258 125 6 27 240 20 271 1.86e-28 113
MS.gene41608.t1 AT3G50530 47.619 105 55 0 139 243 339 443 2.34e-28 113
MS.gene41608.t1 AT3G50530 36.296 135 78 3 19 147 140 272 2.64e-18 84.7
MS.gene41608.t1 AT5G01810 29.231 260 132 6 27 240 12 265 4.65e-28 110
MS.gene41608.t1 AT3G17510 28.352 261 134 5 27 240 20 274 4.96e-28 111
MS.gene41608.t1 AT2G26980 29.545 264 135 6 27 244 14 272 6.24e-28 110
MS.gene41608.t1 AT2G25880 28.682 258 141 6 27 244 25 279 6.28e-28 108
MS.gene41608.t1 AT2G25880 28.682 258 141 6 27 244 38 292 7.24e-28 108
MS.gene41608.t1 AT4G32830 28.832 274 144 7 11 244 23 285 8.50e-28 108
MS.gene41608.t1 AT5G35410 28.682 258 135 5 27 240 11 263 9.76e-28 109
MS.gene41608.t1 AT2G26980 29.545 264 135 6 27 244 14 272 9.82e-28 110
MS.gene41608.t1 AT2G26980 29.545 264 135 6 27 244 14 272 1.02e-27 110
MS.gene41608.t1 AT2G26980 29.545 264 135 6 27 244 24 282 1.04e-27 110
MS.gene41608.t1 AT5G01810 29.231 260 132 6 27 240 12 265 1.42e-27 110
MS.gene41608.t1 AT5G01810 29.231 260 132 6 27 240 12 265 1.42e-27 110
MS.gene41608.t1 AT2G25880 28.682 258 141 6 27 244 86 340 1.51e-27 108
MS.gene41608.t1 AT5G35410 28.682 258 135 5 27 240 11 263 1.62e-27 110
MS.gene41608.t1 AT5G39440 30.075 266 136 6 20 240 9 269 1.85e-27 110
MS.gene41608.t1 AT1G01140 28.846 260 136 5 27 240 19 275 5.09e-27 108
MS.gene41608.t1 AT3G23000 29.344 259 134 4 27 240 25 279 1.08e-26 107
MS.gene41608.t1 AT1G30270 28.462 260 135 5 27 240 31 285 1.60e-26 107
MS.gene41608.t1 AT1G01140 29.231 260 133 6 27 240 19 273 1.96e-26 107
MS.gene41608.t1 AT1G01140 29.231 260 133 6 27 240 19 273 2.11e-26 107
MS.gene41608.t1 AT1G30270 28.462 260 135 5 27 240 31 285 2.58e-26 107
MS.gene41608.t1 AT4G30960 29.478 268 137 6 27 248 24 285 2.70e-26 106
MS.gene41608.t1 AT4G14580 28.352 261 135 4 27 240 21 276 7.73e-26 105
MS.gene41608.t1 AT5G07070 30.072 276 134 8 11 240 3 265 1.13e-25 105
MS.gene41608.t1 AT2G30360 28.137 263 137 7 27 242 21 278 1.21e-25 104
MS.gene41608.t1 AT2G26980 29.675 246 122 6 27 226 14 254 1.61e-25 101
MS.gene41608.t1 AT5G25110 29.615 260 131 7 27 240 43 296 2.09e-25 104
MS.gene41608.t1 AT5G45820 28.077 260 135 6 27 240 12 265 2.47e-25 103
MS.gene41608.t1 AT5G21222 27.273 264 141 5 27 244 13 271 3.72e-25 104
MS.gene41608.t1 AT5G21222 27.273 264 141 5 27 244 13 271 3.72e-25 104
MS.gene41608.t1 AT5G21222 27.273 264 141 5 27 244 13 271 3.72e-25 104
MS.gene41608.t1 AT5G21222 27.273 264 141 5 27 244 13 271 3.72e-25 104
MS.gene41608.t1 AT5G45810 28.846 260 133 6 27 240 28 281 8.86e-25 102
MS.gene41608.t1 AT2G45490 25.581 258 149 4 27 244 22 276 1.18e-24 100
MS.gene41608.t1 AT4G18700 29.231 260 132 6 27 240 26 279 1.24e-24 102
MS.gene41608.t1 AT5G10930 28.626 262 134 8 27 241 12 267 6.19e-23 97.4
MS.gene41608.t1 AT2G25090 28.358 268 133 7 27 240 15 277 2.30e-22 95.9
MS.gene41608.t1 AT4G40010 27.376 263 139 6 27 242 4 261 2.40e-22 94.7
MS.gene41608.t1 AT5G08590 27.586 261 137 5 27 240 4 259 3.99e-22 94.4
MS.gene41608.t1 AT3G53930 25.926 270 153 5 27 251 20 287 1.23e-21 94.4
MS.gene41608.t1 AT3G53930 25.926 270 153 5 27 251 20 287 1.25e-21 94.4
MS.gene41608.t1 AT2G37840 24.555 281 165 5 16 251 1 279 1.50e-21 94.0
MS.gene41608.t1 AT3G61960 27.208 283 150 7 27 260 10 285 1.88e-21 93.6
MS.gene41608.t1 AT3G61960 27.208 283 150 7 27 260 10 285 2.37e-21 93.6
MS.gene41608.t1 AT1G48260 30.570 193 82 4 103 248 1 188 1.92e-20 89.4
MS.gene41608.t1 AT1G48260 30.570 193 82 4 103 248 1 188 1.92e-20 89.4
MS.gene41608.t1 AT1G48260 30.570 193 82 4 103 248 1 188 1.92e-20 89.4
MS.gene41608.t1 AT1G48260 30.570 193 82 4 103 248 1 188 1.92e-20 89.4
MS.gene41608.t1 AT5G63650 26.038 265 144 5 27 244 4 263 7.48e-20 87.8
MS.gene41608.t1 AT1G29230 26.923 260 138 7 27 240 74 327 1.28e-19 88.2
MS.gene41608.t1 AT1G60940 25.180 278 156 6 27 257 4 276 1.35e-19 87.4
MS.gene41608.t1 AT1G60940 25.180 278 156 6 27 257 4 276 1.35e-19 87.4
MS.gene41608.t1 AT1G78290 26.692 266 141 7 27 244 4 263 2.58e-19 86.3
MS.gene41608.t1 AT1G78290 26.692 266 141 7 27 244 4 263 2.58e-19 86.3
MS.gene41608.t1 AT2G34180 26.538 260 139 7 27 240 57 310 5.78e-19 86.3
MS.gene41608.t1 AT1G10940 25.000 268 149 5 27 247 4 266 1.71e-18 84.3
MS.gene41608.t1 AT5G57630 26.482 253 137 5 27 236 12 258 2.31e-18 84.3
MS.gene41608.t1 AT5G57630 26.482 253 137 5 27 236 12 258 2.48e-18 84.0
MS.gene41608.t1 AT5G01820 26.471 272 145 8 27 249 22 287 3.71e-18 83.6
MS.gene41608.t1 AT3G17510 28.877 187 81 4 101 240 13 194 5.47e-18 82.8
MS.gene41608.t1 AT3G45240 26.437 261 138 6 31 242 112 367 5.83e-18 82.8
MS.gene41608.t1 AT3G45240 27.273 264 135 7 31 242 112 370 6.46e-18 82.8
MS.gene41608.t1 AT3G45240 27.273 264 135 7 31 242 112 370 6.46e-18 82.8
MS.gene41608.t1 AT2G38490 28.846 260 133 7 27 240 28 281 7.04e-18 82.8
MS.gene41608.t1 AT1G45160 41.379 116 55 4 133 240 844 954 1.76e-17 82.4
MS.gene41608.t1 AT1G45160 41.379 116 55 4 133 240 844 954 1.85e-17 82.4
MS.gene41608.t1 AT1G30270 28.495 186 83 4 102 241 8 189 2.62e-17 80.9
MS.gene41608.t1 AT5G08590 28.877 187 86 3 105 244 1 187 1.89e-16 77.4
MS.gene41608.t1 AT5G04510 24.710 259 131 7 27 229 44 294 3.45e-16 78.2
MS.gene41608.t1 AT5G04510 24.710 259 131 7 27 229 44 294 5.21e-16 77.4
MS.gene41608.t1 AT5G04510 24.710 259 131 7 27 229 44 294 8.09e-15 73.2
MS.gene41608.t1 AT5G62310 45.745 94 41 3 144 232 943 1031 2.20e-14 73.2
MS.gene41608.t1 AT1G48490 38.462 104 59 3 144 243 1011 1113 1.71e-12 67.4
MS.gene41608.t1 AT1G48490 38.462 104 59 3 144 243 1011 1113 1.71e-12 67.4
MS.gene41608.t1 AT1G48490 38.462 104 59 3 144 243 1011 1113 1.71e-12 67.4
MS.gene41608.t1 AT1G48490 38.462 104 59 3 144 243 1012 1114 1.72e-12 67.4
MS.gene41608.t1 AT2G37840 32.110 109 73 1 144 251 34 142 2.05e-12 67.0
MS.gene41608.t1 AT3G06030 25.830 271 147 8 30 249 71 338 2.33e-12 67.0
MS.gene41608.t1 AT1G03920 37.624 101 60 2 144 241 222 322 3.11e-12 66.2
MS.gene41608.t1 AT1G30640 38.235 102 58 3 144 241 230 330 4.38e-12 65.9
MS.gene41608.t1 AT1G03920 37.624 101 60 2 144 241 335 435 4.96e-12 65.9
MS.gene41608.t1 AT1G03920 37.624 101 60 2 144 241 335 435 4.96e-12 65.9
MS.gene41608.t1 AT3G17850 39.362 94 47 3 144 232 1071 1159 8.39e-12 65.5
MS.gene41608.t1 AT1G30640 38.235 102 58 3 144 241 323 423 8.77e-12 65.1
MS.gene41608.t1 AT1G30640 38.235 102 58 3 144 241 323 423 8.77e-12 65.1
MS.gene41608.t1 AT4G33080 39.048 105 58 3 144 243 301 404 9.09e-12 65.1
MS.gene41608.t1 AT4G33080 39.048 105 58 3 144 243 301 404 9.19e-12 65.1
MS.gene41608.t1 AT3G53930 32.673 101 67 1 152 251 2 102 1.71e-11 64.3
MS.gene41608.t1 AT3G53930 32.673 101 67 1 152 251 2 102 1.89e-11 64.3
MS.gene41608.t1 AT3G53930 32.673 101 67 1 152 251 2 102 1.89e-11 64.3
MS.gene41608.t1 AT5G09890 40.000 100 57 2 144 240 304 403 2.29e-11 63.9
MS.gene41608.t1 AT5G09890 40.000 100 57 2 144 240 304 403 2.52e-11 63.9
MS.gene41608.t1 AT1G53570 25.862 232 148 8 30 241 217 444 2.66e-11 63.9
MS.gene41608.t1 AT5G57630 34.653 101 60 2 138 236 74 170 4.29e-11 62.8
MS.gene41608.t1 AT3G44200 34.821 112 69 3 131 241 154 262 4.79e-11 63.2
MS.gene41608.t1 AT3G44200 34.821 112 69 3 131 241 154 262 4.79e-11 63.2
MS.gene41608.t1 AT4G14350 39.216 102 57 3 144 241 318 418 7.38e-11 62.4
MS.gene41608.t1 AT4G14350 39.216 102 57 3 144 241 318 418 9.06e-11 62.0
MS.gene41608.t1 AT4G14350 39.216 102 57 3 144 241 318 418 9.06e-11 62.0
MS.gene41608.t1 AT4G14350 39.216 102 57 3 144 241 318 418 9.06e-11 62.0

Find 57 sgRNAs with CRISPR-Local

Find 133 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAATTTCTCTGTAAAATA+AGG 0.161557 3.4:-88113816 None:intergenic
AACTATATTTCTAATCAATT+TGG 0.216435 3.4:-88114153 None:intergenic
TAAGCGGGGTGCCTCCGTTT+TGG 0.249111 3.4:+88115161 MS.gene41608:CDS
CTGTTTGTTGATCCCCTCCT+TGG 0.331288 3.4:-88115297 None:intergenic
ACCTCTGGTGCAGTATAGCC+TGG 0.423907 3.4:-88115073 None:intergenic
GCACTCCAAATGTCTGCTTC+AGG 0.426410 3.4:-88115115 None:intergenic
ATGGACCTGAAGCAGACATT+TGG 0.437988 3.4:+88115110 MS.gene41608:CDS
GTTTGATAGGATTGTGAAGA+AGG 0.439249 3.4:+88114106 MS.gene41608:CDS
GAAATTGAAGGCCACGGCTT+AGG 0.444797 3.4:-88115347 None:intergenic
GAAACATTTAGTCAAGTTGT+TGG 0.446071 3.4:+88115046 MS.gene41608:CDS
AGAATTTCTCTGTAAAATAA+GGG 0.447053 3.4:-88113815 None:intergenic
CTACACGTTAGGTAGACAAC+TGG 0.448889 3.4:+88113845 MS.gene41608:CDS
TTGATTAGAAATATAGTTGA+GGG 0.460590 3.4:+88114158 MS.gene41608:CDS
CTTCTATCGTCGACAATCCA+TGG 0.462744 3.4:-88115559 None:intergenic
ACAGAGAACTTATAGACAAC+AGG 0.463551 3.4:-88115617 None:intergenic
AGTCAAGTTGTTGGAACCCC+AGG 0.470655 3.4:+88115055 MS.gene41608:CDS
CAACTGGGCCAAGGTCAATT+CGG 0.478235 3.4:+88113861 MS.gene41608:CDS
AAGGTGGTGAGTTGTTTGAT+AGG 0.480005 3.4:+88114093 MS.gene41608:CDS
GAGTGCACACACAATTCAAC+AGG 0.488549 3.4:+88113894 MS.gene41608:CDS
GATGAAACTATTACGCATTG+AGG 0.492378 3.4:+88113947 MS.gene41608:CDS
GAGGTCTTGAACGGGCATTA+TGG 0.493285 3.4:+88115091 MS.gene41608:CDS
TTCTGTCAAATCTACACGTT+AGG 0.504600 3.4:+88113834 MS.gene41608:CDS
TTGAAAGGAATCCGGAGAAA+AGG 0.507068 3.4:+88115402 MS.gene41608:CDS
TTGGCACCGTCTGAAATTGA+AGG 0.509194 3.4:-88115359 None:intergenic
TAATGCCCGTTCAAGACCTC+TGG 0.511246 3.4:-88115088 None:intergenic
TTTGATAGGATTGTGAAGAA+GGG 0.526562 3.4:+88114107 MS.gene41608:CDS
TTCAATTTCAGACGGTGCCA+AGG 0.527095 3.4:+88115361 MS.gene41608:CDS
GAAGCAGACATTTGGAGTGC+CGG 0.534755 3.4:+88115118 MS.gene41608:CDS
CCTCTGGTGCAGTATAGCCT+GGG 0.536066 3.4:-88115072 None:intergenic
CTGCACCAGAGGTCTTGAAC+GGG 0.536546 3.4:+88115083 MS.gene41608:CDS
GAAAACTTTGTGAAAATCCA+TGG 0.538160 3.4:+88114023 MS.gene41608:CDS
GATAATTTACCTCCCCAAAA+CGG 0.550561 3.4:-88115175 None:intergenic
ATAAATCTTCATAGATACCA+TGG 0.559353 3.4:-88114040 None:intergenic
GTAAAATAAGGGAGAACCCA+TGG 0.561040 3.4:-88113804 None:intergenic
TTGATTTGCAGCCTAAGCCG+TGG 0.574260 3.4:+88115336 MS.gene41608:CDS
TGAGATTGACTTGCACGCGT+AGG 0.584700 3.4:-88113922 None:intergenic
TTCTATCGTCGACAATCCAT+GGG 0.586524 3.4:-88115558 None:intergenic
ATTGATTAGAAATATAGTTG+AGG 0.590682 3.4:+88114157 MS.gene41608:CDS
TTGATAGGATTGTGAAGAAG+GGG 0.592898 3.4:+88114108 MS.gene41608:CDS
CCGTCTGAAATTGAAGGCCA+CGG 0.599134 3.4:-88115353 None:intergenic
CTCTGGTGCAGTATAGCCTG+GGG 0.599484 3.4:-88115071 None:intergenic
TTTGTATTTCTTATTAAGCG+GGG 0.602317 3.4:+88115147 MS.gene41608:CDS
TTACGATGATGTTCTGAGAG+AGG 0.603257 3.4:+88113971 MS.gene41608:CDS
ACTGCACCAGAGGTCTTGAA+CGG 0.607574 3.4:+88115082 MS.gene41608:CDS
TAACCTACAGAGACCAAGGA+GGG 0.610754 3.4:+88115284 MS.gene41608:intron
GTTATGGAGCTGTGTGAAGG+TGG 0.614258 3.4:+88114077 MS.gene41608:CDS
CCGTGGCCTTCAATTTCAGA+CGG 0.615060 3.4:+88115353 MS.gene41608:CDS
ATTGTGTGTGCACTCATATG+TGG 0.615101 3.4:-88113886 None:intergenic
TTAGGTAGACAACTGGGCCA+AGG 0.621607 3.4:+88113852 MS.gene41608:CDS
TTGGTTATGGAGCTGTGTGA+AGG 0.625965 3.4:+88114074 MS.gene41608:CDS
CCCAGGCTATACTGCACCAG+AGG 0.637073 3.4:+88115072 MS.gene41608:CDS
ATGTGGTGCCGAATTGACCT+TGG 0.652607 3.4:-88113869 None:intergenic
TACACGTTAGGTAGACAACT+GGG 0.668157 3.4:+88113846 MS.gene41608:CDS
TAAGAAATACAAAATAACGC+CGG 0.669744 3.4:-88115137 None:intergenic
AACCTACAGAGACCAAGGAG+GGG 0.676140 3.4:+88115285 MS.gene41608:intron
AATTTACCTCCCCAAAACGG+AGG 0.704130 3.4:-88115172 None:intergenic
TTAACCTACAGAGACCAAGG+AGG 0.760856 3.4:+88115283 MS.gene41608:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAGAAAAAAAAAACC+TGG - chr3.4:88114311-88114330 None:intergenic 15.0%
!! TAAGTATATATATCATGAAA+GGG - chr3.4:88115003-88115022 None:intergenic 15.0%
!! TTAAGTATATATATCATGAA+AGG - chr3.4:88115004-88115023 None:intergenic 15.0%
!!! AACTATATTTCTAATCAATT+TGG - chr3.4:88114156-88114175 None:intergenic 15.0%
!!! ATTTTGTATTTCTTATTAAG+CGG + chr3.4:88115145-88115164 MS.gene41608:CDS 15.0%
!!! GAAATTATTTTAAATTTTGG+TGG + chr3.4:88114443-88114462 MS.gene41608:intron 15.0%
!! AGAATTTCTCTGTAAAATAA+GGG - chr3.4:88113818-88113837 None:intergenic 20.0%
!! AGTAGATCATACAAAAAATT+AGG + chr3.4:88115580-88115599 MS.gene41608:CDS 20.0%
!! ATTGATTAGAAATATAGTTG+AGG + chr3.4:88114157-88114176 MS.gene41608:CDS 20.0%
!! TTGATTAGAAATATAGTTGA+GGG + chr3.4:88114158-88114177 MS.gene41608:CDS 20.0%
!!! AAATTATCATTAGTTGATGT+AGG + chr3.4:88115190-88115209 MS.gene41608:intron 20.0%
!!! ACTCTCAAAATTATTGATTT+TGG + chr3.4:88114266-88114285 MS.gene41608:intron 20.0%
!!! AGATTTATTTTCTTTTCACT+TGG + chr3.4:88114055-88114074 MS.gene41608:CDS 20.0%
!!! CTCTCAAAATTATTGATTTT+GGG + chr3.4:88114267-88114286 MS.gene41608:intron 20.0%
!!! TTTTGTATTTCTTATTAAGC+GGG + chr3.4:88115146-88115165 MS.gene41608:CDS 20.0%
! AATAAGATACTTGCTCTATA+AGG - chr3.4:88115464-88115483 None:intergenic 25.0%
! ATAAATCTTCATAGATACCA+TGG - chr3.4:88114043-88114062 None:intergenic 25.0%
! ATTGAAGATTGTCATTCTAA+TGG + chr3.4:88114182-88114201 MS.gene41608:intron 25.0%
! CAACAAGCATACTATATATT+TGG - chr3.4:88114839-88114858 None:intergenic 25.0%
! CAGAATTTCTCTGTAAAATA+AGG - chr3.4:88113819-88113838 None:intergenic 25.0%
! GATCATACAAAAAATTAGGA+TGG + chr3.4:88115584-88115603 MS.gene41608:CDS 25.0%
! TAAGAAATACAAAATAACGC+CGG - chr3.4:88115140-88115159 None:intergenic 25.0%
! TTGAAGATTGTCATTCTAAT+GGG + chr3.4:88114183-88114202 MS.gene41608:intron 25.0%
! TTTGAATAATTATCACAACG+AGG + chr3.4:88115494-88115513 MS.gene41608:intron 25.0%
! TTTGTATTTCTTATTAAGCG+GGG + chr3.4:88115147-88115166 MS.gene41608:CDS 25.0%
!! AACAAATTGATGTGATTTTC+AGG + chr3.4:88115022-88115041 MS.gene41608:intron 25.0%
!! AATATATAGTATGCTTGTTG+AGG + chr3.4:88114839-88114858 MS.gene41608:intron 25.0%
!! ATTTTCTTTTCACTTGGTTA+TGG + chr3.4:88114061-88114080 MS.gene41608:CDS 25.0%
!!! TGATTTGAATCTTGTTGTTT+TGG + chr3.4:88114471-88114490 MS.gene41608:intron 25.0%
AAAAATGCTTGAAAGGAATC+CGG + chr3.4:88115394-88115413 MS.gene41608:CDS 30.0%
ACAAAAAATTAGGATGGAAG+TGG + chr3.4:88115590-88115609 MS.gene41608:CDS 30.0%
GAAAACTTTGTGAAAATCCA+TGG + chr3.4:88114023-88114042 MS.gene41608:CDS 30.0%
TACTTCGAAAAATGCTTGAA+AGG + chr3.4:88115387-88115406 MS.gene41608:CDS 30.0%
TGAAAGTTATAGAGCTTATG+TGG + chr3.4:88115518-88115537 MS.gene41608:intron 30.0%
TGAAGATTGTCATTCTAATG+GGG + chr3.4:88114184-88114203 MS.gene41608:intron 30.0%
TTGTAGAGTTCCTAATTGAT+GGG + chr3.4:88114562-88114581 MS.gene41608:intron 30.0%
TTGTTGAGGAAATAAATGGA+GGG + chr3.4:88114853-88114872 MS.gene41608:intron 30.0%
TTTCTTTCTGTACCATGATT+TGG + chr3.4:88114610-88114629 MS.gene41608:intron 30.0%
TTTGATAGGATTGTGAAGAA+GGG + chr3.4:88114107-88114126 MS.gene41608:CDS 30.0%
! ATCAACAAACAGATTTTGCA+AGG + chr3.4:88115308-88115327 MS.gene41608:CDS 30.0%
! ATGCTTGTTGAGGAAATAAA+TGG + chr3.4:88114849-88114868 MS.gene41608:intron 30.0%
! GAAACATTTAGTCAAGTTGT+TGG + chr3.4:88115046-88115065 MS.gene41608:CDS 30.0%
! TTTTAGCAGTATCAAACACA+AGG - chr3.4:88114238-88114257 None:intergenic 30.0%
ACACAAGGTTATCAGGTTTA+AGG - chr3.4:88114223-88114242 None:intergenic 35.0%
ACTCATATAGCACTTGACTA+AGG + chr3.4:88114769-88114788 MS.gene41608:intron 35.0%
ATATATCATGAAAGGGCTTC+TGG - chr3.4:88114996-88115015 None:intergenic 35.0%
CAGCACAATATTAGCATTAC+TGG - chr3.4:88115255-88115274 None:intergenic 35.0%
CTTGTTGAGGAAATAAATGG+AGG + chr3.4:88114852-88114871 MS.gene41608:intron 35.0%
GATAATTTACCTCCCCAAAA+CGG - chr3.4:88115178-88115197 None:intergenic 35.0%
GATGAAACTATTACGCATTG+AGG + chr3.4:88113947-88113966 MS.gene41608:CDS 35.0%
GTATCAAACACAAGGTTATC+AGG - chr3.4:88114230-88114249 None:intergenic 35.0%
GTTGTAGAGTTCCTAATTGA+TGG + chr3.4:88114561-88114580 MS.gene41608:intron 35.0%
GTTTGATAGGATTGTGAAGA+AGG + chr3.4:88114106-88114125 MS.gene41608:CDS 35.0%
TCGATCAAATTCTGTGTGAT+TGG + chr3.4:88114351-88114370 MS.gene41608:intron 35.0%
TGTAGAGTTCCTAATTGATG+GGG + chr3.4:88114563-88114582 MS.gene41608:intron 35.0%
TGTGTAGTGTATACTCTTTG+AGG - chr3.4:88114538-88114557 None:intergenic 35.0%
TTCTGTCAAATCTACACGTT+AGG + chr3.4:88113834-88113853 MS.gene41608:CDS 35.0%
TTGATAGGATTGTGAAGAAG+GGG + chr3.4:88114108-88114127 MS.gene41608:CDS 35.0%
! ACAAACAGATTTTGCAAGGA+AGG + chr3.4:88115312-88115331 MS.gene41608:CDS 35.0%
! TCTGCATCTTTTACAAACGA+GGG + chr3.4:88114402-88114421 MS.gene41608:intron 35.0%
! TTCTGCATCTTTTACAAACG+AGG + chr3.4:88114401-88114420 MS.gene41608:intron 35.0%
! TTTTTAACCTACAGAGACCA+AGG + chr3.4:88115280-88115299 MS.gene41608:intron 35.0%
!! ATAAATGGAGGGTACTCAAA+TGG + chr3.4:88114864-88114883 MS.gene41608:intron 35.0%
!! CATTTTTCGAAGTAGATCCT+TGG - chr3.4:88115381-88115400 None:intergenic 35.0%
!! TAAATGGAGGGTACTCAAAT+GGG + chr3.4:88114865-88114884 MS.gene41608:intron 35.0%
!!! AGAGCTTATGTGGTTTTTTG+TGG + chr3.4:88115528-88115547 MS.gene41608:intron 35.0%
!!! TTGTCTACTTTTTACAAGCC+AGG + chr3.4:88114290-88114309 MS.gene41608:intron 35.0%
AAGGTGGTGAGTTGTTTGAT+AGG + chr3.4:88114093-88114112 MS.gene41608:CDS 40.0%
ACACGACACTAACATTGACA+TGG + chr3.4:88114652-88114671 MS.gene41608:intron 40.0%
AGTACCACCACAAAAACCAT+GGG + chr3.4:88113788-88113807 MS.gene41608:CDS 40.0%
ATTGTGTGTGCACTCATATG+TGG - chr3.4:88113889-88113908 None:intergenic 40.0%
GTAAAATAAGGGAGAACCCA+TGG - chr3.4:88113807-88113826 None:intergenic 40.0%
GTCAAGTGCTATATGAGTCA+CGG - chr3.4:88114767-88114786 None:intergenic 40.0%
TACACGTTAGGTAGACAACT+GGG + chr3.4:88113846-88113865 MS.gene41608:CDS 40.0%
TCAATGTTAGTGTCGTGTTC+AGG - chr3.4:88114650-88114669 None:intergenic 40.0%
TGAAAACAGTGACATGCCTA+CGG - chr3.4:88115216-88115235 None:intergenic 40.0%
TTACTGTGTTCAATCAGCTG+AGG + chr3.4:88114813-88114832 MS.gene41608:intron 40.0%
TTCTATCGTCGACAATCCAT+GGG - chr3.4:88115561-88115580 None:intergenic 40.0%
TTGAAAGGAATCCGGAGAAA+AGG + chr3.4:88115402-88115421 MS.gene41608:CDS 40.0%
TTGATGGGGTGGTTCAAATT+TGG + chr3.4:88114577-88114596 MS.gene41608:intron 40.0%
TTTGAACCACCCCATCAATT+AGG - chr3.4:88114575-88114594 None:intergenic 40.0%
!! TTACGATGATGTTCTGAGAG+AGG + chr3.4:88113971-88113990 MS.gene41608:CDS 40.0%
!!! CTTATGTGGTTTTTTGTGGC+AGG + chr3.4:88115532-88115551 MS.gene41608:intron 40.0%
AATTTACCTCCCCAAAACGG+AGG - chr3.4:88115175-88115194 None:intergenic 45.0%
AGAGTTCCTAATTGATGGGG+TGG + chr3.4:88114566-88114585 MS.gene41608:intron 45.0%
ATGGACCTGAAGCAGACATT+TGG + chr3.4:88115110-88115129 MS.gene41608:CDS 45.0%
CAGTACCACCACAAAAACCA+TGG + chr3.4:88113787-88113806 MS.gene41608:CDS 45.0%
CTACACGTTAGGTAGACAAC+TGG + chr3.4:88113845-88113864 MS.gene41608:CDS 45.0%
CTTCTATCGTCGACAATCCA+TGG - chr3.4:88115562-88115581 None:intergenic 45.0%
GAGTGCACACACAATTCAAC+AGG + chr3.4:88113894-88113913 MS.gene41608:CDS 45.0%
TAACCTACAGAGACCAAGGA+GGG + chr3.4:88115284-88115303 MS.gene41608:intron 45.0%
TAATCGTATCAGCGCGTTGT+CGG + chr3.4:88114714-88114733 MS.gene41608:intron 45.0%
TGTGTTCGTGCTCCAAATCA+TGG - chr3.4:88114625-88114644 None:intergenic 45.0%
TTAACCTACAGAGACCAAGG+AGG + chr3.4:88115283-88115302 MS.gene41608:intron 45.0%
TTGGTTATGGAGCTGTGTGA+AGG + chr3.4:88114074-88114093 MS.gene41608:CDS 45.0%
! AGAACCCATGGTTTTTGTGG+TGG - chr3.4:88113795-88113814 None:intergenic 45.0%
! CATTAGTTGATGTAGGCCGT+AGG + chr3.4:88115197-88115216 MS.gene41608:intron 45.0%
! GAAAGGGCTTCTGGTTGATA+TGG - chr3.4:88114987-88115006 None:intergenic 45.0%
! TGAGCTGTGAACCTTTTCTC+CGG - chr3.4:88115416-88115435 None:intergenic 45.0%
! TGGTTTTTGTGGTGGTACTG+TGG - chr3.4:88113787-88113806 None:intergenic 45.0%
! TTCAATTTCAGACGGTGCCA+AGG + chr3.4:88115361-88115380 MS.gene41608:CDS 45.0%
! TTGGCACCGTCTGAAATTGA+AGG - chr3.4:88115362-88115381 None:intergenic 45.0%
!!! AAAGAAATTATTTTAAATTT+TGG + chr3.4:88114440-88114459 MS.gene41608:intron 5.0%
AACCTACAGAGACCAAGGAG+GGG + chr3.4:88115285-88115304 MS.gene41608:intron 50.0%
ACTGCACCAGAGGTCTTGAA+CGG + chr3.4:88115082-88115101 MS.gene41608:CDS 50.0%
CAACTGGGCCAAGGTCAATT+CGG + chr3.4:88113861-88113880 MS.gene41608:CDS 50.0%
CCGTGGCCTTCAATTTCAGA+CGG + chr3.4:88115353-88115372 MS.gene41608:CDS 50.0%
GAAATTGAAGGCCACGGCTT+AGG - chr3.4:88115350-88115369 None:intergenic 50.0%
GAGGTCTTGAACGGGCATTA+TGG + chr3.4:88115091-88115110 MS.gene41608:CDS 50.0%
GCACTCCAAATGTCTGCTTC+AGG - chr3.4:88115118-88115137 None:intergenic 50.0%
GTTATGGAGCTGTGTGAAGG+TGG + chr3.4:88114077-88114096 MS.gene41608:CDS 50.0%
TAATGCCCGTTCAAGACCTC+TGG - chr3.4:88115091-88115110 None:intergenic 50.0%
TTAGGTAGACAACTGGGCCA+AGG + chr3.4:88113852-88113871 MS.gene41608:CDS 50.0%
! AGTCAAGTTGTTGGAACCCC+AGG + chr3.4:88115055-88115074 MS.gene41608:CDS 50.0%
! ATGTGGTGCCGAATTGACCT+TGG - chr3.4:88113872-88113891 None:intergenic 50.0%
! CCGTCTGAAATTGAAGGCCA+CGG - chr3.4:88115356-88115375 None:intergenic 50.0%
! CTGTTTGTTGATCCCCTCCT+TGG - chr3.4:88115300-88115319 None:intergenic 50.0%
! GAAGCAGACATTTGGAGTGC+CGG + chr3.4:88115118-88115137 MS.gene41608:CDS 50.0%
! GGGAGAACCCATGGTTTTTG+TGG - chr3.4:88113798-88113817 None:intergenic 50.0%
! TTTTTGTGGCAGGTCACCCA+TGG + chr3.4:88115542-88115561 MS.gene41608:intron 50.0%
!! TGAGATTGACTTGCACGCGT+AGG - chr3.4:88113925-88113944 None:intergenic 50.0%
!! TTGATTTGCAGCCTAAGCCG+TGG + chr3.4:88115336-88115355 MS.gene41608:CDS 50.0%
ACCTCTGGTGCAGTATAGCC+TGG - chr3.4:88115076-88115095 None:intergenic 55.0%
ATCCCCTCCTTGGTCTCTGT+AGG - chr3.4:88115290-88115309 None:intergenic 55.0%
CCTCTGGTGCAGTATAGCCT+GGG - chr3.4:88115075-88115094 None:intergenic 55.0%
CTCTGGTGCAGTATAGCCTG+GGG - chr3.4:88115074-88115093 None:intergenic 55.0%
CTGCACCAGAGGTCTTGAAC+GGG + chr3.4:88115083-88115102 MS.gene41608:CDS 55.0%
TATCAGCGCGTTGTCGGTGT+CGG + chr3.4:88114720-88114739 MS.gene41608:intron 55.0%
CCCAGGCTATACTGCACCAG+AGG + chr3.4:88115072-88115091 MS.gene41608:CDS 60.0%
!! AAGCGGGGTGCCTCCGTTTT+GGG + chr3.4:88115162-88115181 MS.gene41608:CDS 60.0%
!! TAAGCGGGGTGCCTCCGTTT+TGG + chr3.4:88115161-88115180 MS.gene41608:CDS 60.0%
!! AGCGGGGTGCCTCCGTTTTG+GGG + chr3.4:88115163-88115182 MS.gene41608:CDS 65.0%
!!! GGGGTGCCTCCGTTTTGGGG+AGG + chr3.4:88115166-88115185 MS.gene41608:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.4 gene 88113768 88115630 88113768 ID=MS.gene41608
chr3.4 mRNA 88113768 88115630 88113768 ID=MS.gene41608.t1;Parent=MS.gene41608
chr3.4 exon 88113768 88114179 88113768 ID=MS.gene41608.t1.exon1;Parent=MS.gene41608.t1
chr3.4 CDS 88113768 88114179 88113768 ID=cds.MS.gene41608.t1;Parent=MS.gene41608.t1
chr3.4 exon 88115044 88115187 88115044 ID=MS.gene41608.t1.exon2;Parent=MS.gene41608.t1
chr3.4 CDS 88115044 88115187 88115044 ID=cds.MS.gene41608.t1;Parent=MS.gene41608.t1
chr3.4 exon 88115294 88115446 88115294 ID=MS.gene41608.t1.exon3;Parent=MS.gene41608.t1
chr3.4 CDS 88115294 88115446 88115294 ID=cds.MS.gene41608.t1;Parent=MS.gene41608.t1
chr3.4 exon 88115554 88115630 88115554 ID=MS.gene41608.t1.exon4;Parent=MS.gene41608.t1
chr3.4 CDS 88115554 88115630 88115554 ID=cds.MS.gene41608.t1;Parent=MS.gene41608.t1
Gene Sequence

>MS.gene41608

ATGTTGGAATTGAACACCACAGTACCACCACAAAAACCATGGGTTCTCCCTTATTTTACAGAGAAATTCTGTCAAATCTACACGTTAGGTAGACAACTGGGCCAAGGTCAATTCGGCACCACATATGAGTGCACACACAATTCAACAGGTCGAACCTACGCGTGCAAGTCAATCTCAAAGATGAAACTATTACGCATTGAGGATTACGATGATGTTCTGAGAGAGGTTCTAATAATGCAACATTTATCAAAAAGCGAAAACTTTGTGAAAATCCATGGTATCTATGAAGATTTATTTTCTTTTCACTTGGTTATGGAGCTGTGTGAAGGTGGTGAGTTGTTTGATAGGATTGTGAAGAAGGGGCGTTATAGTGAGAGAAAAGCTGCCAAATTGATTAGAAATATAGTTGAGGGTATTGAAGATTGTCATTCTAATGGGGTTATGCATAGAGACCTTAAACCTGATAACCTTGTGTTTGATACTGCTAAAAAAGATGCAACTCTCAAAATTATTGATTTTGGGTTGTCTACTTTTTACAAGCCAGGTTTTTTTTTTCTTTTTTTTTCTCTCTATGCTTTCTATTTCGATCAAATTCTGTGTGATTGGTAAAATTGATGAATGATGCGATGATGATTCTGCATCTTTTACAAACGAGGGAAATTTTTTTGTTCTAAAGAAATTATTTTAAATTTTGGTGGAGCTATGATTTGAATCTTGTTGTTTTGGTTGTATATCTAGTAATTAGAGTTTGATAAGAGTCAATGAAACCTCAAAGAGTATACACTACACATTTGTTGTAGAGTTCCTAATTGATGGGGTGGTTCAAATTTGGAAATATATCTTTTCTTTCTGTACCATGATTTGGAGCACGAACACAAACCTGAACACGACACTAACATTGACATGGATATTTTTTTTTTTGTTGAGAAAATGACATAATTAATTATAATCGTATCAGCGCGTTGTCGGTGTCGGACATGATACGTCAGACACTGTCCGTGACTCATATAGCACTTGACTAAGGCTTTCTTTGTTAAGAGTCATTTTACTGTGTTCAATCAGCTGAGGCCAAATATATAGTATGCTTGTTGAGGAAATAAATGGAGGGTACTCAAATGGGAAAAGTGCTCAAATTGAACTTTTCGTTAACAATGAAATCTGAAGCTTGTCTTGTATCTACAATTTGATTTTTCACAGTAGTTACTTTCATTCATTGCCATATCAACCAGAAGCCCTTTCATGATATATATACTTAACAAATTGATGTGATTTTCAGGTGAAACATTTAGTCAAGTTGTTGGAACCCCAGGCTATACTGCACCAGAGGTCTTGAACGGGCATTATGGACCTGAAGCAGACATTTGGAGTGCCGGCGTTATTTTGTATTTCTTATTAAGCGGGGTGCCTCCGTTTTGGGGAGGTAAATTATCATTAGTTGATGTAGGCCGTAGGCATGTCACTGTTTTCATTATCTTCATCTTTCACCAGTAATGCTAATATTGTGCTGCAATTTTTTTAACCTACAGAGACCAAGGAGGGGATCAACAAACAGATTTTGCAAGGAAGGCTTGATTTGCAGCCTAAGCCGTGGCCTTCAATTTCAGACGGTGCCAAGGATCTACTTCGAAAAATGCTTGAAAGGAATCCGGAGAAAAGGTTCACAGCTCATCAAGTGCTCAGTAAGTCTAAACTTCCTTATAGAGCAAGTATCTTATTTATATGAATATTTGAATAATTATCACAACGAGGTTGAAAGTTATAGAGCTTATGTGGTTTTTTGTGGCAGGTCACCCATGGATTGTCGACGATAGAAGTAGATCATACAAAAAATTAGGATGGAAGTGGTTTTCCTGTTGTCTATAA
Protein sequence

>MS.gene41608.t1

MLELNTTVPPQKPWVLPYFTEKFCQIYTLGRQLGQGQFGTTYECTHNSTGRTYACKSISKMKLLRIEDYDDVLREVLIMQHLSKSENFVKIHGIYEDLFSFHLVMELCEGGELFDRIVKKGRYSERKAAKLIRNIVEGETFSQVVGTPGYTAPEVLNGHYGPEADIWSAGVILYFLLSGVPPFWGETKEGINKQILQGRLDLQPKPWPSISDGAKDLLRKMLERNPEKRFTAHQVLSHPWIVDDRSRSYKKLGWKWFSCCL