Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41638.t1 | XP_003602745.1 | 99.7 | 392 | 1 | 0 | 1 | 392 | 1 | 392 | 1.50E-184 | 655.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41638.t1 | O48559 | 96.2 | 395 | 12 | 1 | 1 | 392 | 1 | 395 | 6.6e-178 | 624.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41638.t1 | Q5BN33 | 99.7 | 392 | 1 | 0 | 1 | 392 | 1 | 392 | 1.0e-184 | 655.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41638.t1 | TF | LFY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41638.t1 | MTR_3g098560 | 99.490 | 392 | 2 | 0 | 1 | 392 | 1 | 392 | 0.0 | 811 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41638.t1 | AT5G61850 | 65.594 | 404 | 115 | 7 | 1 | 386 | 1 | 398 | 3.08e-160 | 457 |
| MS.gene41638.t1 | AT5G61850 | 64.951 | 408 | 115 | 8 | 1 | 386 | 1 | 402 | 1.14e-157 | 451 |
Find 123 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGCTGAGAAGAGGGTTTA+AGG | 0.220415 | 3.4:+88399029 | MS.gene41638:CDS |
| ATGTCGTGAGTTCTTGATTC+AGG | 0.260029 | 3.4:+88398286 | MS.gene41638:CDS |
| GGTAACCTTGCTGGGTAATA+AGG | 0.267462 | 3.4:-88397321 | None:intergenic |
| GAGGCGGTGGGAAGCGGAGG+AGG | 0.273663 | 3.4:+88398020 | MS.gene41638:CDS |
| AGTTCTCTTGGTAACCTTGC+TGG | 0.317522 | 3.4:-88397330 | None:intergenic |
| CACATCCTCGTCTTTCAATA+TGG | 0.331865 | 3.4:+88399151 | MS.gene41638:CDS |
| AGGTGACAAATCAGGTATTT+AGG | 0.336960 | 3.4:+88398908 | MS.gene41638:intron |
| CCATTCATTGTGACAGAGCC+TGG | 0.376080 | 3.4:+88398206 | MS.gene41638:CDS |
| ACGGCATCAAAGCTGCCATT+AGG | 0.383226 | 3.4:+88397529 | MS.gene41638:CDS |
| GAGAAGGAGGCGGTGGGAAG+CGG | 0.385452 | 3.4:+88398014 | MS.gene41638:CDS |
| GACTGCGTAGTCGAGAAGTT+GGG | 0.398890 | 3.4:-88397277 | None:intergenic |
| CGGCATCAAAGCTGCCATTA+GGG | 0.401490 | 3.4:+88397530 | MS.gene41638:CDS |
| AAACGCCGGGGTCTTCTCTC+TGG | 0.419881 | 3.4:+88397585 | MS.gene41638:CDS |
| CCAGGCTCTGTCACAATGAA+TGG | 0.421125 | 3.4:-88398206 | None:intergenic |
| AAGGAGGCGGTGGGAAGCGG+AGG | 0.424426 | 3.4:+88398017 | MS.gene41638:CDS |
| GCGTCTCCGTTCAGCCCTAA+TGG | 0.426738 | 3.4:-88397544 | None:intergenic |
| TCCAACCCTCCAAGTTCTCT+TGG | 0.430987 | 3.4:-88397342 | None:intergenic |
| TATTCTTAATTAAGGTTTGT+CGG | 0.438516 | 3.4:+88397971 | MS.gene41638:intron |
| TTGCCACGTGCAACTTCCCC+AGG | 0.439306 | 3.4:-88398224 | None:intergenic |
| GATTGAAGTCTAACTTAGAA+AGG | 0.448211 | 3.4:-88399264 | None:intergenic |
| ATGGTATAGTATACCTTGGT+AGG | 0.452240 | 3.4:-88398344 | None:intergenic |
| TTAAGGTTTGTCGGAGGAGC+CGG | 0.457376 | 3.4:+88397980 | MS.gene41638:intron |
| GCAAGGTTACCAAGAGAACT+TGG | 0.476055 | 3.4:+88397333 | MS.gene41638:CDS |
| AAGGAGAAGGATGAAGATGA+AGG | 0.477090 | 3.4:+88398097 | MS.gene41638:CDS |
| AGAAGAGGGTTTAAGGAAAG+AGG | 0.480856 | 3.4:+88399036 | MS.gene41638:CDS |
| TGACTGCGTAGTCGAGAAGT+TGG | 0.482736 | 3.4:-88397278 | None:intergenic |
| GCTTCAAGCTCCGTCTCTGT+TGG | 0.485056 | 3.4:+88399228 | MS.gene41638:CDS |
| CAATAGCTGCACGTCAAGGA+TGG | 0.486959 | 3.4:+88399106 | MS.gene41638:CDS |
| GAAAGAGGCAGCAAATAAGA+AGG | 0.487031 | 3.4:+88398078 | MS.gene41638:CDS |
| ACAGCGAGAGAAGGAGGCGG+TGG | 0.487501 | 3.4:+88398007 | MS.gene41638:CDS |
| TTTAGGTATGCAAAGAAAGC+TGG | 0.492979 | 3.4:+88398925 | MS.gene41638:CDS |
| TGCGTGGGTCCCACTTGAAT+AGG | 0.494961 | 3.4:-88397224 | None:intergenic |
| TCCTTCTCTCGCTGTACCAC+CGG | 0.501299 | 3.4:-88397999 | None:intergenic |
| TAAGGTGACGGAGCAGTTGA+AGG | 0.502859 | 3.4:-88397303 | None:intergenic |
| AGGAGAAGGATGAAGATGAA+GGG | 0.505804 | 3.4:+88398098 | MS.gene41638:CDS |
| GAGAGCGTCAAGAGCGTTGG+TGG | 0.506027 | 3.4:-88397613 | None:intergenic |
| TTGAGTGTAGGTGACAAATC+AGG | 0.506470 | 3.4:+88398900 | MS.gene41638:intron |
| AGGCTGGCGGTGAATGCGTC+GGG | 0.507213 | 3.4:-88397204 | None:intergenic |
| GTTCTCTTGGTAACCTTGCT+GGG | 0.507232 | 3.4:-88397329 | None:intergenic |
| TGAAGAGGAAATTAAACGCC+GGG | 0.509415 | 3.4:+88397572 | MS.gene41638:CDS |
| TTTCGTTGGGATCTTCTCGT+TGG | 0.511591 | 3.4:+88397498 | MS.gene41638:CDS |
| AGTATCTGATTCCATAAGCT+TGG | 0.513074 | 3.4:-88397374 | None:intergenic |
| ATTGCATTGTTTAGATGAAG+AGG | 0.515227 | 3.4:+88398999 | MS.gene41638:CDS |
| GAATGAAGAAGGAGATGAGG+AGG | 0.516159 | 3.4:+88398139 | MS.gene41638:CDS |
| GTTTAATTTCCTCTTCATCA+AGG | 0.516212 | 3.4:-88397566 | None:intergenic |
| CTCTCCGCGTTCCTTAGCAA+TGG | 0.516636 | 3.4:-88398315 | None:intergenic |
| TGGGTCCCACTTGAATAGGC+TGG | 0.516787 | 3.4:-88397220 | None:intergenic |
| GGAGAAGGATGAAGATGAAG+GGG | 0.519390 | 3.4:+88398099 | MS.gene41638:CDS |
| ACCAAGAGAACTTGGAGGGT+TGG | 0.520875 | 3.4:+88397341 | MS.gene41638:CDS |
| AGGCGGTGGGAAGCGGAGGA+GGG | 0.524644 | 3.4:+88398021 | MS.gene41638:CDS |
| GAGTACGTGGGAGGTAGCCG+TGG | 0.528494 | 3.4:+88398043 | MS.gene41638:CDS |
| CATTCATTGTGACAGAGCCT+GGG | 0.529014 | 3.4:+88398207 | MS.gene41638:CDS |
| GTGGGAGGTAGCCGTGGTGG+AGG | 0.537327 | 3.4:+88398049 | MS.gene41638:CDS |
| CTTCTCGTTGGAGAACGTTA+CGG | 0.539245 | 3.4:+88397510 | MS.gene41638:CDS |
| ATGAAGGGGACTGGTGATCA+TGG | 0.540345 | 3.4:+88398113 | MS.gene41638:CDS |
| TGAGAATGAAGAAGGAGATG+AGG | 0.540691 | 3.4:+88398136 | MS.gene41638:CDS |
| AGGATGAAGATGAAGGGGAC+TGG | 0.542061 | 3.4:+88398104 | MS.gene41638:CDS |
| GAAGCGGAGGAGGGAGTACG+TGG | 0.545167 | 3.4:+88398030 | MS.gene41638:CDS |
| AAGAGAACTTGGAGGGTTGG+AGG | 0.545242 | 3.4:+88397344 | MS.gene41638:CDS |
| AGAGAGAGCGTCAAGAGCGT+TGG | 0.546844 | 3.4:-88397616 | None:intergenic |
| GCCGGTGGTACAGCGAGAGA+AGG | 0.548302 | 3.4:+88397998 | MS.gene41638:CDS |
| GGACGGAGAGGTGGAGCTGT+TGG | 0.549389 | 3.4:-88397255 | None:intergenic |
| GAGGAGAGAACGTTGGTGCA+TGG | 0.550139 | 3.4:+88399055 | MS.gene41638:CDS |
| AGAAGTTGGGGACGGAGAGG+TGG | 0.556007 | 3.4:-88397264 | None:intergenic |
| AGGTGGAGCTGTTGGTAGGA+CGG | 0.556396 | 3.4:-88397247 | None:intergenic |
| ACGGAGACGCCTTGATGAAG+AGG | 0.562424 | 3.4:+88397557 | MS.gene41638:CDS |
| TACGTGGGAGGTAGCCGTGG+TGG | 0.564030 | 3.4:+88398046 | MS.gene41638:CDS |
| GAAGTCTAACTTAGAAAGGA+AGG | 0.570913 | 3.4:-88399260 | None:intergenic |
| GCTGTTGGTAGGACGGTGCG+TGG | 0.571008 | 3.4:-88397240 | None:intergenic |
| GAAGATAACATCAGTGGTGG+GGG | 0.573896 | 3.4:+88398164 | MS.gene41638:CDS |
| AAGAAGATAACATCAGTGGT+GGG | 0.574442 | 3.4:+88398162 | MS.gene41638:CDS |
| TAGGCTGGCGGTGAATGCGT+CGG | 0.576957 | 3.4:-88397205 | None:intergenic |
| AGAAGATAACATCAGTGGTG+GGG | 0.583595 | 3.4:+88398163 | MS.gene41638:CDS |
| CGTGCAGCTATTGCTACAAG+TGG | 0.585606 | 3.4:-88399096 | None:intergenic |
| GGTGGTACAGCGAGAGAAGG+AGG | 0.587891 | 3.4:+88398001 | MS.gene41638:CDS |
| CGGAGGAGGGAGTACGTGGG+AGG | 0.588428 | 3.4:+88398034 | MS.gene41638:CDS |
| GCGGCGAAGATAGCAGAGCT+TGG | 0.589296 | 3.4:+88397402 | MS.gene41638:CDS |
| AATAGCTGCACGTCAAGGAT+GGG | 0.590285 | 3.4:+88399107 | MS.gene41638:CDS |
| TCAGGTTCAAGCCATTGCTA+AGG | 0.593270 | 3.4:+88398304 | MS.gene41638:CDS |
| TGGTGGAGGAGAGAAGAAAG+AGG | 0.595087 | 3.4:+88398063 | MS.gene41638:CDS |
| ACTGCGTAGTCGAGAAGTTG+GGG | 0.596538 | 3.4:-88397276 | None:intergenic |
| CTTTCTTCTCTCCTCCACCA+CGG | 0.599475 | 3.4:-88398060 | None:intergenic |
| GAAGAAGATAACATCAGTGG+TGG | 0.599484 | 3.4:+88398161 | MS.gene41638:CDS |
| GTATCAAATGAGCTGAGAAG+AGG | 0.605442 | 3.4:+88399021 | MS.gene41638:CDS |
| CAGCGAGAGAAGGAGGCGGT+GGG | 0.606592 | 3.4:+88398008 | MS.gene41638:CDS |
| TGGTATAGTATACCTTGGTA+GGG | 0.608009 | 3.4:-88398343 | None:intergenic |
| AGGTTTGTCGGAGGAGCCGG+TGG | 0.610012 | 3.4:+88397983 | MS.gene41638:intron |
| TCACCGCCAGCCTATTCAAG+TGG | 0.610527 | 3.4:+88397214 | MS.gene41638:CDS |
| GGAGAGGTGGAGCTGTTGGT+AGG | 0.611893 | 3.4:-88397251 | None:intergenic |
| GTCAGCTTTGTCATGCTGAG+AGG | 0.612831 | 3.4:+88399193 | MS.gene41638:CDS |
| GGCAGCAAATAAGAAGGAGA+AGG | 0.613195 | 3.4:+88398084 | MS.gene41638:CDS |
| TATCAAATGAGCTGAGAAGA+GGG | 0.613772 | 3.4:+88399022 | MS.gene41638:CDS |
| GTCTAACTTAGAAAGGAAGG+TGG | 0.617350 | 3.4:-88399257 | None:intergenic |
| CTTGACGCTCTCTCTCAAGA+AGG | 0.618687 | 3.4:+88397624 | MS.gene41638:CDS |
| CTGTTGGTAGGACGGTGCGT+GGG | 0.619175 | 3.4:-88397239 | None:intergenic |
| CGTCACCTTATTACCCAGCA+AGG | 0.621883 | 3.4:+88397316 | MS.gene41638:CDS |
| GATCATGGTGAGAATGAAGA+AGG | 0.622763 | 3.4:+88398128 | MS.gene41638:CDS |
| GTAGCAATAGCTGCACGTCA+AGG | 0.625576 | 3.4:+88399102 | MS.gene41638:CDS |
| TCTAACTTAGAAAGGAAGGT+GGG | 0.626116 | 3.4:-88399256 | None:intergenic |
| CTTGCTGGGTAATAAGGTGA+CGG | 0.634053 | 3.4:-88397315 | None:intergenic |
| GTGGGAAGTTCCAACAGAGA+CGG | 0.635033 | 3.4:-88399238 | None:intergenic |
| GGTTACCAAGAGAACTTGGA+GGG | 0.636203 | 3.4:+88397337 | MS.gene41638:CDS |
| ATGAAGAGGAAATTAAACGC+CGG | 0.636563 | 3.4:+88397571 | MS.gene41638:CDS |
| AAGCTGCCATTAGGGCTGAA+CGG | 0.643172 | 3.4:+88397538 | MS.gene41638:CDS |
| CGGAGAGAAATGCCCTACCA+AGG | 0.646303 | 3.4:+88398331 | MS.gene41638:CDS |
| TCGAGAAGTTGGGGACGGAG+AGG | 0.648809 | 3.4:-88397267 | None:intergenic |
| CACCGCCAGCCTATTCAAGT+GGG | 0.649274 | 3.4:+88397215 | MS.gene41638:CDS |
| CAAGCCATTGCTAAGGAACG+CGG | 0.651128 | 3.4:+88398311 | MS.gene41638:CDS |
| GAGCACGTTGGTGGACATGA+AGG | 0.653688 | 3.4:+88397434 | MS.gene41638:CDS |
| ATTCATTGTGACAGAGCCTG+GGG | 0.659933 | 3.4:+88398208 | MS.gene41638:CDS |
| GAGCCTGGGGAAGTTGCACG+TGG | 0.664392 | 3.4:+88398221 | MS.gene41638:CDS |
| AGGTTACCAAGAGAACTTGG+AGG | 0.664565 | 3.4:+88397336 | MS.gene41638:CDS |
| TCTTAATTAAGGTTTGTCGG+AGG | 0.666720 | 3.4:+88397974 | MS.gene41638:intron |
| AAGGAAAGAGGAGAGAACGT+TGG | 0.674755 | 3.4:+88399048 | MS.gene41638:CDS |
| GTCCCACTTGAATAGGCTGG+CGG | 0.674932 | 3.4:-88397217 | None:intergenic |
| AAGCGGAGGAGGGAGTACGT+GGG | 0.678866 | 3.4:+88398031 | MS.gene41638:CDS |
| CGTAGTCGAGAAGTTGGGGA+CGG | 0.679261 | 3.4:-88397272 | None:intergenic |
| GAGGAAGAAGATAACATCAG+TGG | 0.681977 | 3.4:+88398158 | MS.gene41638:CDS |
| GGTACAGCGAGAGAAGGAGG+CGG | 0.707868 | 3.4:+88398004 | MS.gene41638:CDS |
| ACGTACCATATTGAAAGACG+AGG | 0.718589 | 3.4:-88399156 | None:intergenic |
| GAAGAGGAAATTAAACGCCG+GGG | 0.750879 | 3.4:+88397573 | MS.gene41638:CDS |
| TATCACCAGAGAGAAGACCC+CGG | 0.770792 | 3.4:-88397590 | None:intergenic |
| TGGAATCAGATACTACACTG+CGG | 0.816299 | 3.4:+88397383 | MS.gene41638:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATACTATATTCTTAATTA+AGG | + | chr3.4:88397963-88397982 | MS.gene41638:intron | 10.0% |
| !! | TATACAAATAAAAAATTGTT+AGG | - | chr3.4:88397779-88397798 | None:intergenic | 10.0% |
| !!! | TTTTTATTTGTATATGAAAA+TGG | + | chr3.4:88397785-88397804 | MS.gene41638:intron | 10.0% |
| !! | ATTATTAGTACAAATATAAG+TGG | - | chr3.4:88397655-88397674 | None:intergenic | 15.0% |
| !! | TTATTCATTCATTTATTATC+CGG | + | chr3.4:88398658-88398677 | MS.gene41638:intron | 15.0% |
| !! | AAAGTAGTATCAAAATTTCA+TGG | - | chr3.4:88398774-88398793 | None:intergenic | 20.0% |
| !! | AATAAAACAAACAAAGTGTA+CGG | - | chr3.4:88398643-88398662 | None:intergenic | 20.0% |
| !! | AGTACATGATTAATAACTTT+AGG | + | chr3.4:88398853-88398872 | MS.gene41638:intron | 20.0% |
| !! | TATTCTTAATTAAGGTTTGT+CGG | + | chr3.4:88397971-88397990 | MS.gene41638:intron | 20.0% |
| !!! | TCATGGATATATTTTTGATT+GGG | - | chr3.4:88398757-88398776 | None:intergenic | 20.0% |
| !!! | TTCATGGATATATTTTTGAT+TGG | - | chr3.4:88398758-88398777 | None:intergenic | 20.0% |
| !!! | TTGATTATATTTGATAACTC+AGG | - | chr3.4:88397929-88397948 | None:intergenic | 20.0% |
| ! | AACTTTGTAATGTTGTTAGT+AGG | - | chr3.4:88398372-88398391 | None:intergenic | 25.0% |
| ! | ACTTTGTAATGTTGTTAGTA+GGG | - | chr3.4:88398371-88398390 | None:intergenic | 25.0% |
| ! | TCATTAATTACTTTGAGTGT+AGG | + | chr3.4:88398888-88398907 | MS.gene41638:intron | 25.0% |
| ! | TTTGATACTACTTTGTGTAT+GGG | + | chr3.4:88398780-88398799 | MS.gene41638:intron | 25.0% |
| !! | TTTTGATACTACTTTGTGTA+TGG | + | chr3.4:88398779-88398798 | MS.gene41638:intron | 25.0% |
| ATTGCATTGTTTAGATGAAG+AGG | + | chr3.4:88398999-88399018 | MS.gene41638:CDS | 30.0% | |
| ! | ATGCATGCATGATTTTGTTA+TGG | - | chr3.4:88398697-88398716 | None:intergenic | 30.0% |
| ! | CATGCATGCATTTTATTATC+CGG | + | chr3.4:88398706-88398725 | MS.gene41638:intron | 30.0% |
| ! | GTTTAATTTCCTCTTCATCA+AGG | - | chr3.4:88397569-88397588 | None:intergenic | 30.0% |
| !! | TTGATTGGGATTTGTTATGA+GGG | - | chr3.4:88398743-88398762 | None:intergenic | 30.0% |
| !! | TTTGATTGGGATTTGTTATG+AGG | - | chr3.4:88398744-88398763 | None:intergenic | 30.0% |
| AAGAAGATAACATCAGTGGT+GGG | + | chr3.4:88398162-88398181 | MS.gene41638:CDS | 35.0% | |
| AGGTGACAAATCAGGTATTT+AGG | + | chr3.4:88398908-88398927 | MS.gene41638:intron | 35.0% | |
| AGTATCTGATTCCATAAGCT+TGG | - | chr3.4:88397377-88397396 | None:intergenic | 35.0% | |
| ATATGAAAATCCCAGTGGAA+TGG | - | chr3.4:88398610-88398629 | None:intergenic | 35.0% | |
| ATGAAGAGGAAATTAAACGC+CGG | + | chr3.4:88397571-88397590 | MS.gene41638:CDS | 35.0% | |
| ATGGTATAGTATACCTTGGT+AGG | - | chr3.4:88398347-88398366 | None:intergenic | 35.0% | |
| CTTTGTGTATGGGATAGTAT+AGG | + | chr3.4:88398790-88398809 | MS.gene41638:intron | 35.0% | |
| TATCAAATGAGCTGAGAAGA+GGG | + | chr3.4:88399022-88399041 | MS.gene41638:CDS | 35.0% | |
| TATGAAAATCCCAGTGGAAT+GGG | - | chr3.4:88398609-88398628 | None:intergenic | 35.0% | |
| TCTTAATTAAGGTTTGTCGG+AGG | + | chr3.4:88397974-88397993 | MS.gene41638:intron | 35.0% | |
| TGATCATATGAAAATCCCAG+TGG | - | chr3.4:88398615-88398634 | None:intergenic | 35.0% | |
| TGGTATAGTATACCTTGGTA+GGG | - | chr3.4:88398346-88398365 | None:intergenic | 35.0% | |
| TGTATGGGATAGTATAGGAT+AGG | + | chr3.4:88398795-88398814 | MS.gene41638:intron | 35.0% | |
| TTTAGGTATGCAAAGAAAGC+TGG | + | chr3.4:88398925-88398944 | MS.gene41638:CDS | 35.0% | |
| !! | GCAAGAAAGTACTGTTCAAA+CGG | - | chr3.4:88398527-88398546 | None:intergenic | 35.0% |
| !! | TTATGGTTCTAGTTTGTGAC+CGG | - | chr3.4:88398680-88398699 | None:intergenic | 35.0% |
| AACACAACACAGAATCTGAC+TGG | - | chr3.4:88398486-88398505 | None:intergenic | 40.0% | |
| AAGGAGAAGGATGAAGATGA+AGG | + | chr3.4:88398097-88398116 | MS.gene41638:CDS | 40.0% | |
| ACGTACCATATTGAAAGACG+AGG | - | chr3.4:88399159-88399178 | None:intergenic | 40.0% | |
| AGAAGAGGGTTTAAGGAAAG+AGG | + | chr3.4:88399036-88399055 | MS.gene41638:CDS | 40.0% | |
| AGAAGATAACATCAGTGGTG+GGG | + | chr3.4:88398163-88398182 | MS.gene41638:CDS | 40.0% | |
| AGGAGAAGGATGAAGATGAA+GGG | + | chr3.4:88398098-88398117 | MS.gene41638:CDS | 40.0% | |
| ATGAAAATCCCAGTGGAATG+GGG | - | chr3.4:88398608-88398627 | None:intergenic | 40.0% | |
| ATGTCGTGAGTTCTTGATTC+AGG | + | chr3.4:88398286-88398305 | MS.gene41638:CDS | 40.0% | |
| CACATCCTCGTCTTTCAATA+TGG | + | chr3.4:88399151-88399170 | MS.gene41638:CDS | 40.0% | |
| GAAAGAGGCAGCAAATAAGA+AGG | + | chr3.4:88398078-88398097 | MS.gene41638:CDS | 40.0% | |
| GAAGAAGATAACATCAGTGG+TGG | + | chr3.4:88398161-88398180 | MS.gene41638:CDS | 40.0% | |
| GAGGAAGAAGATAACATCAG+TGG | + | chr3.4:88398158-88398177 | MS.gene41638:CDS | 40.0% | |
| GATCATGGTGAGAATGAAGA+AGG | + | chr3.4:88398128-88398147 | MS.gene41638:CDS | 40.0% | |
| GGATAGTATAGGATAGGATG+GGG | + | chr3.4:88398801-88398820 | MS.gene41638:intron | 40.0% | |
| GGGATAGTATAGGATAGGAT+GGG | + | chr3.4:88398800-88398819 | MS.gene41638:intron | 40.0% | |
| GTAATGTTGTTAGTAGGGCA+TGG | - | chr3.4:88398366-88398385 | None:intergenic | 40.0% | |
| GTATCAAATGAGCTGAGAAG+AGG | + | chr3.4:88399021-88399040 | MS.gene41638:CDS | 40.0% | |
| TGAAGAGGAAATTAAACGCC+GGG | + | chr3.4:88397572-88397591 | MS.gene41638:CDS | 40.0% | |
| TGAGAATGAAGAAGGAGATG+AGG | + | chr3.4:88398136-88398155 | MS.gene41638:CDS | 40.0% | |
| TGGAATCAGATACTACACTG+CGG | + | chr3.4:88397383-88397402 | MS.gene41638:CDS | 40.0% | |
| TGGGATAGTATAGGATAGGA+TGG | + | chr3.4:88398799-88398818 | MS.gene41638:intron | 40.0% | |
| TTGAGTGTAGGTGACAAATC+AGG | + | chr3.4:88398900-88398919 | MS.gene41638:intron | 40.0% | |
| ! | GAGGAACTTTTCCAAGCTTA+TGG | + | chr3.4:88397363-88397382 | MS.gene41638:CDS | 40.0% |
| ! | TGCACGTAGTGTCTCATTTT+TGG | - | chr3.4:88398970-88398989 | None:intergenic | 40.0% |
| !! | CAAAGCTGACGAAGTTTTGT+TGG | - | chr3.4:88399183-88399202 | None:intergenic | 40.0% |
| AAGGAAAGAGGAGAGAACGT+TGG | + | chr3.4:88399048-88399067 | MS.gene41638:CDS | 45.0% | |
| AATAGCTGCACGTCAAGGAT+GGG | + | chr3.4:88399107-88399126 | MS.gene41638:CDS | 45.0% | |
| ACTGTTCAAACGGTTCGTGA+AGG | - | chr3.4:88398517-88398536 | None:intergenic | 45.0% | |
| AGGTTACCAAGAGAACTTGG+AGG | + | chr3.4:88397336-88397355 | MS.gene41638:CDS | 45.0% | |
| ATTCATTGTGACAGAGCCTG+GGG | + | chr3.4:88398208-88398227 | MS.gene41638:CDS | 45.0% | |
| CATTCATTGTGACAGAGCCT+GGG | + | chr3.4:88398207-88398226 | MS.gene41638:CDS | 45.0% | |
| CTTCTCGTTGGAGAACGTTA+CGG | + | chr3.4:88397510-88397529 | MS.gene41638:CDS | 45.0% | |
| CTTGCTGGGTAATAAGGTGA+CGG | - | chr3.4:88397318-88397337 | None:intergenic | 45.0% | |
| GAAGAGGAAATTAAACGCCG+GGG | + | chr3.4:88397573-88397592 | MS.gene41638:CDS | 45.0% | |
| GAAGATAACATCAGTGGTGG+GGG | + | chr3.4:88398164-88398183 | MS.gene41638:CDS | 45.0% | |
| GAATGAAGAAGGAGATGAGG+AGG | + | chr3.4:88398139-88398158 | MS.gene41638:CDS | 45.0% | |
| GCAAGGTTACCAAGAGAACT+TGG | + | chr3.4:88397333-88397352 | MS.gene41638:CDS | 45.0% | |
| GGAGAAGGATGAAGATGAAG+GGG | + | chr3.4:88398099-88398118 | MS.gene41638:CDS | 45.0% | |
| GGCAGCAAATAAGAAGGAGA+AGG | + | chr3.4:88398084-88398103 | MS.gene41638:CDS | 45.0% | |
| GGGCATGGTATAGTATACCT+TGG | - | chr3.4:88398351-88398370 | None:intergenic | 45.0% | |
| GGTAACCTTGCTGGGTAATA+AGG | - | chr3.4:88397324-88397343 | None:intergenic | 45.0% | |
| GGTTACCAAGAGAACTTGGA+GGG | + | chr3.4:88397337-88397356 | MS.gene41638:CDS | 45.0% | |
| GTTGCACGTGGCAAAAAGAA+CGG | + | chr3.4:88398233-88398252 | MS.gene41638:CDS | 45.0% | |
| TATGAGGGCAAGCTAAGATC+CGG | - | chr3.4:88398728-88398747 | None:intergenic | 45.0% | |
| TCAGGTTCAAGCCATTGCTA+AGG | + | chr3.4:88398304-88398323 | MS.gene41638:CDS | 45.0% | |
| TGAGCTGAGAAGAGGGTTTA+AGG | + | chr3.4:88399029-88399048 | MS.gene41638:CDS | 45.0% | |
| TTTCGTTGGGATCTTCTCGT+TGG | + | chr3.4:88397498-88397517 | MS.gene41638:CDS | 45.0% | |
| ! | AGTTCTCTTGGTAACCTTGC+TGG | - | chr3.4:88397333-88397352 | None:intergenic | 45.0% |
| ! | CCTCTCGCAGATTTTTCGTT+GGG | + | chr3.4:88397485-88397504 | MS.gene41638:CDS | 45.0% |
| ! | GTTCTCTTGGTAACCTTGCT+GGG | - | chr3.4:88397332-88397351 | None:intergenic | 45.0% |
| ! | TTTTACAGTGAGCACGTTGG+TGG | + | chr3.4:88397425-88397444 | MS.gene41638:CDS | 45.0% |
| !! | TGGTTTTACAGTGAGCACGT+TGG | + | chr3.4:88397422-88397441 | MS.gene41638:CDS | 45.0% |
| AAAATCCCAGTGGAATGGGG+AGG | - | chr3.4:88398605-88398624 | None:intergenic | 50.0% | |
| AACCCATTAGGAGAGTCCCT+GGG | - | chr3.4:88398579-88398598 | None:intergenic | 50.0% | |
| AAGAGAACTTGGAGGGTTGG+AGG | + | chr3.4:88397344-88397363 | MS.gene41638:CDS | 50.0% | |
| AAGCTGCCATTAGGGCTGAA+CGG | + | chr3.4:88397538-88397557 | MS.gene41638:CDS | 50.0% | |
| ACCAAGAGAACTTGGAGGGT+TGG | + | chr3.4:88397341-88397360 | MS.gene41638:CDS | 50.0% | |
| ACGGCATCAAAGCTGCCATT+AGG | + | chr3.4:88397529-88397548 | MS.gene41638:CDS | 50.0% | |
| ACGTGGCAAAAAGAACGGTC+TGG | + | chr3.4:88398238-88398257 | MS.gene41638:CDS | 50.0% | |
| ACTGCGTAGTCGAGAAGTTG+GGG | - | chr3.4:88397279-88397298 | None:intergenic | 50.0% | |
| AGGATGAAGATGAAGGGGAC+TGG | + | chr3.4:88398104-88398123 | MS.gene41638:CDS | 50.0% | |
| CAAGCCATTGCTAAGGAACG+CGG | + | chr3.4:88398311-88398330 | MS.gene41638:CDS | 50.0% | |
| CAATAGCTGCACGTCAAGGA+TGG | + | chr3.4:88399106-88399125 | MS.gene41638:CDS | 50.0% | |
| CCAGGCTCTGTCACAATGAA+TGG | - | chr3.4:88398209-88398228 | None:intergenic | 50.0% | |
| CCATTCATTGTGACAGAGCC+TGG | + | chr3.4:88398206-88398225 | MS.gene41638:CDS | 50.0% | |
| CCCAACGAAAAATCTGCGAG+AGG | - | chr3.4:88397488-88397507 | None:intergenic | 50.0% | |
| CGGCATCAAAGCTGCCATTA+GGG | + | chr3.4:88397530-88397549 | MS.gene41638:CDS | 50.0% | |
| CGTCACCTTATTACCCAGCA+AGG | + | chr3.4:88397316-88397335 | MS.gene41638:CDS | 50.0% | |
| CGTGCAGCTATTGCTACAAG+TGG | - | chr3.4:88399099-88399118 | None:intergenic | 50.0% | |
| CTTGACGCTCTCTCTCAAGA+AGG | + | chr3.4:88397624-88397643 | MS.gene41638:CDS | 50.0% | |
| CTTTCTTCTCTCCTCCACCA+CGG | - | chr3.4:88398063-88398082 | None:intergenic | 50.0% | |
| GACTGCGTAGTCGAGAAGTT+GGG | - | chr3.4:88397280-88397299 | None:intergenic | 50.0% | |
| GTAGCAATAGCTGCACGTCA+AGG | + | chr3.4:88399102-88399121 | MS.gene41638:CDS | 50.0% | |
| GTGGGAAGTTCCAACAGAGA+CGG | - | chr3.4:88399241-88399260 | None:intergenic | 50.0% | |
| GTGTTCGGATGAACGTGTCA+CGG | - | chr3.4:88398549-88398568 | None:intergenic | 50.0% | |
| TATCACCAGAGAGAAGACCC+CGG | - | chr3.4:88397593-88397612 | None:intergenic | 50.0% | |
| TCCAACCCTCCAAGTTCTCT+TGG | - | chr3.4:88397345-88397364 | None:intergenic | 50.0% | |
| TGACTGCGTAGTCGAGAAGT+TGG | - | chr3.4:88397281-88397300 | None:intergenic | 50.0% | |
| TGGTGGAGGAGAGAAGAAAG+AGG | + | chr3.4:88398063-88398082 | MS.gene41638:CDS | 50.0% | |
| TTAAGGTTTGTCGGAGGAGC+CGG | + | chr3.4:88397980-88397999 | MS.gene41638:intron | 50.0% | |
| ! | ATGAAGGGGACTGGTGATCA+TGG | + | chr3.4:88398113-88398132 | MS.gene41638:CDS | 50.0% |
| ! | GCCTCTCGCAGATTTTTCGT+TGG | + | chr3.4:88397484-88397503 | MS.gene41638:CDS | 50.0% |
| ! | GTCAGCTTTGTCATGCTGAG+AGG | + | chr3.4:88399193-88399212 | MS.gene41638:CDS | 50.0% |
| !! | TAAGGTGACGGAGCAGTTGA+AGG | - | chr3.4:88397306-88397325 | None:intergenic | 50.0% |
| ACGGAGACGCCTTGATGAAG+AGG | + | chr3.4:88397557-88397576 | MS.gene41638:CDS | 55.0% | |
| ATGGGGAGGTGGAACCCATT+AGG | - | chr3.4:88398591-88398610 | None:intergenic | 55.0% | |
| CACCGCCAGCCTATTCAAGT+GGG | + | chr3.4:88397215-88397234 | MS.gene41638:CDS | 55.0% | |
| CGGAGAGAAATGCCCTACCA+AGG | + | chr3.4:88398331-88398350 | MS.gene41638:CDS | 55.0% | |
| CGTAGTCGAGAAGTTGGGGA+CGG | - | chr3.4:88397275-88397294 | None:intergenic | 55.0% | |
| CTCTCCGCGTTCCTTAGCAA+TGG | - | chr3.4:88398318-88398337 | None:intergenic | 55.0% | |
| GAACCCATTAGGAGAGTCCC+TGG | - | chr3.4:88398580-88398599 | None:intergenic | 55.0% | |
| GACCCAGGGACTCTCCTAAT+GGG | + | chr3.4:88398574-88398593 | MS.gene41638:intron | 55.0% | |
| GAGGAGAGAACGTTGGTGCA+TGG | + | chr3.4:88399055-88399074 | MS.gene41638:CDS | 55.0% | |
| GCTTCAAGCTCCGTCTCTGT+TGG | + | chr3.4:88399228-88399247 | MS.gene41638:CDS | 55.0% | |
| GTCCCACTTGAATAGGCTGG+CGG | - | chr3.4:88397220-88397239 | None:intergenic | 55.0% | |
| TCACCGCCAGCCTATTCAAG+TGG | + | chr3.4:88397214-88397233 | MS.gene41638:CDS | 55.0% | |
| TCCTTCTCTCGCTGTACCAC+CGG | - | chr3.4:88398002-88398021 | None:intergenic | 55.0% | |
| TGCGTGGGTCCCACTTGAAT+AGG | - | chr3.4:88397227-88397246 | None:intergenic | 55.0% | |
| TGGGTCCCACTTGAATAGGC+TGG | - | chr3.4:88397223-88397242 | None:intergenic | 55.0% | |
| TTCCACCTCCCCATTCCACT+GGG | + | chr3.4:88398597-88398616 | MS.gene41638:intron | 55.0% | |
| ! | AGGTGGAGCTGTTGGTAGGA+CGG | - | chr3.4:88397250-88397269 | None:intergenic | 55.0% |
| ! | GAGCACGTTGGTGGACATGA+AGG | + | chr3.4:88397434-88397453 | MS.gene41638:CDS | 55.0% |
| !! | AGAGAGAGCGTCAAGAGCGT+TGG | - | chr3.4:88397619-88397638 | None:intergenic | 55.0% |
| AAACGCCGGGGTCTTCTCTC+TGG | + | chr3.4:88397585-88397604 | MS.gene41638:CDS | 60.0% | |
| AGAAGTTGGGGACGGAGAGG+TGG | - | chr3.4:88397267-88397286 | None:intergenic | 60.0% | |
| ATCCCAGTGGAATGGGGAGG+TGG | - | chr3.4:88398602-88398621 | None:intergenic | 60.0% | |
| ATCCGAACACGTGACGACCC+AGG | + | chr3.4:88398559-88398578 | MS.gene41638:intron | 60.0% | |
| CGACCCAGGGACTCTCCTAA+TGG | + | chr3.4:88398573-88398592 | MS.gene41638:intron | 60.0% | |
| GCGGCGAAGATAGCAGAGCT+TGG | + | chr3.4:88397402-88397421 | MS.gene41638:CDS | 60.0% | |
| GCGTCTCCGTTCAGCCCTAA+TGG | - | chr3.4:88397547-88397566 | None:intergenic | 60.0% | |
| GGAGAGGTGGAGCTGTTGGT+AGG | - | chr3.4:88397254-88397273 | None:intergenic | 60.0% | |
| GGTACAGCGAGAGAAGGAGG+CGG | + | chr3.4:88398004-88398023 | MS.gene41638:CDS | 60.0% | |
| GGTGGTACAGCGAGAGAAGG+AGG | + | chr3.4:88398001-88398020 | MS.gene41638:CDS | 60.0% | |
| GTTCCACCTCCCCATTCCAC+TGG | + | chr3.4:88398596-88398615 | MS.gene41638:intron | 60.0% | |
| TAGGCTGGCGGTGAATGCGT+CGG | - | chr3.4:88397208-88397227 | None:intergenic | 60.0% | |
| TCCCTGGGTCGTCACGTGTT+CGG | - | chr3.4:88398564-88398583 | None:intergenic | 60.0% | |
| TCCGAACACGTGACGACCCA+GGG | + | chr3.4:88398560-88398579 | MS.gene41638:intron | 60.0% | |
| TCGAGAAGTTGGGGACGGAG+AGG | - | chr3.4:88397270-88397289 | None:intergenic | 60.0% | |
| TTGCCACGTGCAACTTCCCC+AGG | - | chr3.4:88398227-88398246 | None:intergenic | 60.0% | |
| ! | AAGCGGAGGAGGGAGTACGT+GGG | + | chr3.4:88398031-88398050 | MS.gene41638:CDS | 60.0% |
| ! | CTGTTGGTAGGACGGTGCGT+GGG | - | chr3.4:88397242-88397261 | None:intergenic | 60.0% |
| !! | GAGAGCGTCAAGAGCGTTGG+TGG | - | chr3.4:88397616-88397635 | None:intergenic | 60.0% |
| ACAGCGAGAGAAGGAGGCGG+TGG | + | chr3.4:88398007-88398026 | MS.gene41638:CDS | 65.0% | |
| AGGCTGGCGGTGAATGCGTC+GGG | - | chr3.4:88397207-88397226 | None:intergenic | 65.0% | |
| AGGTTTGTCGGAGGAGCCGG+TGG | + | chr3.4:88397983-88398002 | MS.gene41638:intron | 65.0% | |
| CAGCGAGAGAAGGAGGCGGT+GGG | + | chr3.4:88398008-88398027 | MS.gene41638:CDS | 65.0% | |
| GAGAAGGAGGCGGTGGGAAG+CGG | + | chr3.4:88398014-88398033 | MS.gene41638:CDS | 65.0% | |
| GAGCCTGGGGAAGTTGCACG+TGG | + | chr3.4:88398221-88398240 | MS.gene41638:CDS | 65.0% | |
| GAGTACGTGGGAGGTAGCCG+TGG | + | chr3.4:88398043-88398062 | MS.gene41638:CDS | 65.0% | |
| GCCGGTGGTACAGCGAGAGA+AGG | + | chr3.4:88397998-88398017 | MS.gene41638:CDS | 65.0% | |
| GGACGGAGAGGTGGAGCTGT+TGG | - | chr3.4:88397258-88397277 | None:intergenic | 65.0% | |
| TACGTGGGAGGTAGCCGTGG+TGG | + | chr3.4:88398046-88398065 | MS.gene41638:CDS | 65.0% | |
| ! | GAAGCGGAGGAGGGAGTACG+TGG | + | chr3.4:88398030-88398049 | MS.gene41638:CDS | 65.0% |
| ! | GCTGTTGGTAGGACGGTGCG+TGG | - | chr3.4:88397243-88397262 | None:intergenic | 65.0% |
| AAGGAGGCGGTGGGAAGCGG+AGG | + | chr3.4:88398017-88398036 | MS.gene41638:CDS | 70.0% | |
| AGGCGGTGGGAAGCGGAGGA+GGG | + | chr3.4:88398021-88398040 | MS.gene41638:CDS | 70.0% | |
| GTGGGAGGTAGCCGTGGTGG+AGG | + | chr3.4:88398049-88398068 | MS.gene41638:CDS | 70.0% | |
| ! | CGGAGGAGGGAGTACGTGGG+AGG | + | chr3.4:88398034-88398053 | MS.gene41638:CDS | 70.0% |
| GAGGCGGTGGGAAGCGGAGG+AGG | + | chr3.4:88398020-88398039 | MS.gene41638:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 88397198 | 88399272 | 88397198 | ID=MS.gene41638 |
| chr3.4 | mRNA | 88397198 | 88399272 | 88397198 | ID=MS.gene41638.t1;Parent=MS.gene41638 |
| chr3.4 | exon | 88397198 | 88397645 | 88397198 | ID=MS.gene41638.t1.exon1;Parent=MS.gene41638.t1 |
| chr3.4 | CDS | 88397198 | 88397645 | 88397198 | ID=cds.MS.gene41638.t1;Parent=MS.gene41638.t1 |
| chr3.4 | exon | 88397985 | 88398352 | 88397985 | ID=MS.gene41638.t1.exon2;Parent=MS.gene41638.t1 |
| chr3.4 | CDS | 88397985 | 88398352 | 88397985 | ID=cds.MS.gene41638.t1;Parent=MS.gene41638.t1 |
| chr3.4 | exon | 88398910 | 88399272 | 88398910 | ID=MS.gene41638.t1.exon3;Parent=MS.gene41638.t1 |
| chr3.4 | CDS | 88398910 | 88399272 | 88398910 | ID=cds.MS.gene41638.t1;Parent=MS.gene41638.t1 |
| Gene Sequence |
| Protein sequence |
