Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41714.t1 | XP_003624615.1 | 98.9 | 265 | 1 | 1 | 1 | 265 | 1 | 263 | 2.60E-145 | 524.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41714.t1 | B3H615 | 78.9 | 265 | 49 | 4 | 1 | 263 | 1 | 260 | 1.8e-118 | 426.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41714.t1 | A2Q5P5 | 98.9 | 265 | 1 | 1 | 1 | 265 | 1 | 263 | 1.9e-145 | 524.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41714.t1 | TR | PHD |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41714.t1 | MTR_7g085450 | 99.245 | 265 | 0 | 1 | 1 | 265 | 1 | 263 | 0.0 | 550 |
| MS.gene41714.t1 | MTR_1g046460 | 30.888 | 259 | 146 | 6 | 9 | 258 | 3 | 237 | 1.66e-31 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41714.t1 | AT1G54390 | 79.623 | 265 | 47 | 4 | 1 | 263 | 1 | 260 | 5.97e-143 | 402 |
| MS.gene41714.t1 | AT1G54390 | 79.623 | 265 | 47 | 4 | 1 | 263 | 1 | 260 | 5.97e-143 | 402 |
| MS.gene41714.t1 | AT1G54390 | 76.211 | 227 | 47 | 4 | 39 | 263 | 19 | 240 | 1.10e-113 | 327 |
| MS.gene41714.t1 | AT1G54390 | 76.211 | 227 | 47 | 4 | 39 | 263 | 19 | 240 | 1.10e-113 | 327 |
| MS.gene41714.t1 | AT1G54390 | 76.211 | 227 | 47 | 4 | 39 | 263 | 19 | 240 | 1.10e-113 | 327 |
| MS.gene41714.t1 | AT1G54390 | 77.922 | 231 | 44 | 4 | 1 | 229 | 1 | 226 | 5.43e-113 | 328 |
| MS.gene41714.t1 | AT1G54390 | 77.922 | 231 | 44 | 4 | 1 | 229 | 1 | 226 | 5.70e-113 | 327 |
| MS.gene41714.t1 | AT1G54390 | 81.768 | 181 | 29 | 3 | 85 | 263 | 1 | 179 | 1.79e-99 | 288 |
| MS.gene41714.t1 | AT3G24010 | 36.111 | 180 | 99 | 4 | 79 | 258 | 61 | 224 | 7.90e-30 | 112 |
Find 61 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAAATTTCAGGTATCTTT+TGG | 0.176968 | 7.2:-22274174 | MS.gene41714:intron |
| TAGTCCTTCTTATGGCTTCC+TGG | 0.301453 | 7.2:+22274368 | None:intergenic |
| AGTCTACGTCGATGACTATT+TGG | 0.315508 | 7.2:-22276111 | MS.gene41714:CDS |
| AATCGAAGAGACTTGATTAC+AGG | 0.362393 | 7.2:-22274430 | MS.gene41714:CDS |
| ACACAGTATGTAGGTTCATT+TGG | 0.368463 | 7.2:+22274311 | None:intergenic |
| ACTTTGTCTGCTGCCTTGTC+TGG | 0.368542 | 7.2:+22275748 | None:intergenic |
| TGTAGGTTCATTTGGATCAA+TGG | 0.378225 | 7.2:+22274319 | None:intergenic |
| AAAAGAAATCGAGGCGAATC+AGG | 0.384479 | 7.2:-22275619 | MS.gene41714:CDS |
| GGATCATATAGTCCTTCTTA+TGG | 0.391014 | 7.2:+22274360 | None:intergenic |
| GTAGGTTCATTTGGATCAAT+GGG | 0.417965 | 7.2:+22274320 | None:intergenic |
| TACATACTGTGTTTGTCATC+AGG | 0.423437 | 7.2:-22274300 | MS.gene41714:intron |
| CTTTAGATCTTCAGCGAAGT+AGG | 0.427352 | 7.2:+22274944 | None:intergenic |
| TTGATTACAGGGAGAGAGAC+TGG | 0.434207 | 7.2:-22274418 | MS.gene41714:CDS |
| TTCTTATGGCTTCCTGGTGG+AGG | 0.438248 | 7.2:+22274374 | None:intergenic |
| AAGCTCAGCGGGCAATGTAT+TGG | 0.453107 | 7.2:+22275988 | None:intergenic |
| CTCATCTCACGGCTCTAAGA+AGG | 0.454623 | 7.2:-22275712 | MS.gene41714:CDS |
| GCAGCAGACAAAGTACTGTA+TGG | 0.463935 | 7.2:-22275739 | MS.gene41714:CDS |
| AGAAGTCTCTGAAGCTCAGC+GGG | 0.472014 | 7.2:+22275977 | None:intergenic |
| GTGGTAGTAATCTGCAAGTT+GGG | 0.493544 | 7.2:+22273940 | None:intergenic |
| GAAAAGCGCAGGCACGCATA+TGG | 0.503955 | 7.2:-22274461 | MS.gene41714:CDS |
| AACACAAGAGACAAGGTTCA+AGG | 0.504646 | 7.2:-22273976 | MS.gene41714:CDS |
| TTAGACCAACACATGAATAG+TGG | 0.520946 | 7.2:+22273997 | None:intergenic |
| GGCACGACAAGCATATGAAC+TGG | 0.521248 | 7.2:-22275559 | MS.gene41714:intron |
| GAAGGACTATATGATCCCTA+TGG | 0.521889 | 7.2:-22274354 | MS.gene41714:CDS |
| TGTGGTAGTAATCTGCAAGT+TGG | 0.523029 | 7.2:+22273939 | None:intergenic |
| CAGCAGACAAAGTACTGTAT+GGG | 0.532458 | 7.2:-22275738 | MS.gene41714:CDS |
| ATGGGTTGATCAATATCCAT+AGG | 0.533374 | 7.2:+22274338 | None:intergenic |
| GATAGTGCCGAGGAGGTGAA+TGG | 0.537405 | 7.2:-22274022 | MS.gene41714:intron |
| AAAATGGCAATTGCACGCAC+TGG | 0.541228 | 7.2:-22276134 | MS.gene41714:CDS |
| TAATCAAGTCTCTTCGATTG+AGG | 0.541620 | 7.2:+22274434 | None:intergenic |
| TCCACCAGGAAGCCATAAGA+AGG | 0.551349 | 7.2:-22274372 | MS.gene41714:CDS |
| AAGATTTATCATTGACATTG+TGG | 0.551966 | 7.2:+22273921 | None:intergenic |
| TGGTTCCACTATTCATGTGT+TGG | 0.555308 | 7.2:-22274002 | MS.gene41714:CDS |
| ATTGAGTTTATGCACTGAGA+AGG | 0.558927 | 7.2:-22275589 | MS.gene41714:CDS |
| ACACAAGAGACAAGGTTCAA+GGG | 0.562098 | 7.2:-22273975 | MS.gene41714:CDS |
| AGACAAGGTTCAAGGGAAAG+TGG | 0.569480 | 7.2:-22273968 | MS.gene41714:CDS |
| TCCCTAAACCTGAAAAGCGC+AGG | 0.571245 | 7.2:-22274472 | MS.gene41714:CDS |
| CAATTACAATTACATGAATG+AGG | 0.576780 | 7.2:-22275670 | MS.gene41714:CDS |
| TCCTTCTTATGGCTTCCTGG+TGG | 0.577394 | 7.2:+22274371 | None:intergenic |
| TTAGGGACAATAGGAAGTGG+GGG | 0.580164 | 7.2:+22274488 | None:intergenic |
| TGTATGGGGTTCTCATCTCA+CGG | 0.581769 | 7.2:-22275723 | MS.gene41714:CDS |
| GGTTTAGGGACAATAGGAAG+TGG | 0.584655 | 7.2:+22274485 | None:intergenic |
| TGGGTTGATCAATATCCATA+GGG | 0.596146 | 7.2:+22274339 | None:intergenic |
| TTCGCTGAAGATCTAAAGCA+AGG | 0.596239 | 7.2:-22274939 | MS.gene41714:intron |
| GAGAAGTCTCTGAAGCTCAG+CGG | 0.598711 | 7.2:+22275976 | None:intergenic |
| TCGTTCATCGAGTTCACGAA+CGG | 0.599115 | 7.2:+22275949 | None:intergenic |
| TGATGACAAACACAGTATGT+AGG | 0.600981 | 7.2:+22274302 | None:intergenic |
| GTTTAGGGACAATAGGAAGT+GGG | 0.601691 | 7.2:+22274486 | None:intergenic |
| TCATCTCACGGCTCTAAGAA+GGG | 0.602372 | 7.2:-22275711 | MS.gene41714:CDS |
| TTTGAGCTAATGCCTCCACC+AGG | 0.610776 | 7.2:-22274386 | MS.gene41714:CDS |
| CCATGTAAAACGACTTGATG+AGG | 0.613217 | 7.2:-22274973 | MS.gene41714:CDS |
| AGTGGAACCATTCACCTCCT+CGG | 0.620021 | 7.2:+22274015 | None:intergenic |
| TGATTACAGGGAGAGAGACT+GGG | 0.622459 | 7.2:-22274417 | MS.gene41714:CDS |
| ATCGAAGAGACTTGATTACA+GGG | 0.633832 | 7.2:-22274429 | MS.gene41714:CDS |
| TGTTATTCTTGATAGTGCCG+AGG | 0.646877 | 7.2:-22274032 | MS.gene41714:intron |
| TTTAGGGACAATAGGAAGTG+GGG | 0.647357 | 7.2:+22274487 | None:intergenic |
| AAGCTATGATAAACCAGACA+AGG | 0.648028 | 7.2:-22275761 | MS.gene41714:CDS |
| AGCAGACAAAGTACTGTATG+GGG | 0.659495 | 7.2:-22275737 | MS.gene41714:CDS |
| GAAAATGCGAAAAGAAATCG+AGG | 0.660931 | 7.2:-22275628 | MS.gene41714:CDS |
| TATTCTTGATAGTGCCGAGG+AGG | 0.680877 | 7.2:-22274029 | MS.gene41714:intron |
| TTGGTCTAACACAAGAGACA+AGG | 0.703698 | 7.2:-22273983 | MS.gene41714:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAAAAAAGTAAATTTTTT+AGG | + | chr7.2:22274178-22274197 | None:intergenic | 10.0% |
| !!! | TTTTATATATAGCATTTATA+AGG | - | chr7.2:22274563-22274582 | MS.gene41714:intron | 10.0% |
| !! | AACAAAAAAGAAAATAAGAA+AGG | + | chr7.2:22275498-22275517 | None:intergenic | 15.0% |
| !! | ATAAGACATATTATTAACAA+TGG | + | chr7.2:22275797-22275816 | None:intergenic | 15.0% |
| !! | TAAGACATATTATTAACAAT+GGG | + | chr7.2:22275796-22275815 | None:intergenic | 15.0% |
| !! | TGGAATAAAATTGAAAAATT+GGG | + | chr7.2:22274032-22274051 | None:intergenic | 15.0% |
| !! | TTGGAATAAAATTGAAAAAT+TGG | + | chr7.2:22274033-22274052 | None:intergenic | 15.0% |
| !!! | AATTTTTTAGGGTTAAAAAA+AGG | + | chr7.2:22274166-22274185 | None:intergenic | 15.0% |
| !!! | ATTTTTTAGGGTTAAAAAAA+GGG | + | chr7.2:22274165-22274184 | None:intergenic | 15.0% |
| !!! | TTTTAATCATCATTTTTTGT+TGG | - | chr7.2:22274255-22274274 | MS.gene41714:intron | 15.0% |
| !! | AGTAATTTCATATCAACAAA+GGG | + | chr7.2:22274201-22274220 | None:intergenic | 20.0% |
| !! | GAATAAAATTGAAAAATTGG+GGG | + | chr7.2:22274030-22274049 | None:intergenic | 20.0% |
| !! | GGAATAAAATTGAAAAATTG+GGG | + | chr7.2:22274031-22274050 | None:intergenic | 20.0% |
| !!! | AAAGAGTATGTTCAATATTT+TGG | - | chr7.2:22275282-22275301 | MS.gene41714:intron | 20.0% |
| !!! | AAATCTATTTTTAGATGCAA+TGG | + | chr7.2:22274234-22274253 | None:intergenic | 20.0% |
| !!! | TCACATTTTATTTTATCAGA+GGG | - | chr7.2:22275518-22275537 | MS.gene41714:intron | 20.0% |
| !!! | TGTCAATGAAATTGTTTTTT+TGG | - | chr7.2:22275455-22275474 | MS.gene41714:intron | 20.0% |
| !!! | TTCACATTTTATTTTATCAG+AGG | - | chr7.2:22275517-22275536 | MS.gene41714:intron | 20.0% |
| ! | AAAAATTGGGGGAAAAATTA+GGG | + | chr7.2:22274019-22274038 | None:intergenic | 25.0% |
| ! | AAATCAGAATGCAAATCAAA+TGG | + | chr7.2:22275155-22275174 | None:intergenic | 25.0% |
| ! | AACAATTTCATTGACAAAGT+AGG | + | chr7.2:22275451-22275470 | None:intergenic | 25.0% |
| ! | AACTCAGTCAAAATAACAAA+AGG | + | chr7.2:22276002-22276021 | None:intergenic | 25.0% |
| ! | ACTTAATCACATTACCATTA+AGG | + | chr7.2:22274654-22274673 | None:intergenic | 25.0% |
| ! | CAATTACAATTACATGAATG+AGG | - | chr7.2:22274390-22274409 | MS.gene41714:CDS | 25.0% |
| ! | CATCTATGGAATAGAAAAAT+TGG | + | chr7.2:22274052-22274071 | None:intergenic | 25.0% |
| ! | CGTAGAGAATAGAAAATAAA+AGG | + | chr7.2:22273985-22274004 | None:intergenic | 25.0% |
| ! | GAGTAATTTCATATCAACAA+AGG | + | chr7.2:22274202-22274221 | None:intergenic | 25.0% |
| ! | GTAATTTCATATCAACAAAG+GGG | + | chr7.2:22274200-22274219 | None:intergenic | 25.0% |
| ! | TTTGAGTAGGAATTTACATT+GGG | + | chr7.2:22274138-22274157 | None:intergenic | 25.0% |
| !!! | AAAAAAGGGAATTTTTGAGT+AGG | + | chr7.2:22274151-22274170 | None:intergenic | 25.0% |
| !!! | AATTTTTTCCATATTGCTTC+TGG | - | chr7.2:22274991-22275010 | MS.gene41714:intron | 25.0% |
| !!! | AGTTTTTGTTTTAGCTTTGA+TGG | - | chr7.2:22274526-22274545 | MS.gene41714:CDS | 25.0% |
| !!! | CACATTTTATTTTATCAGAG+GGG | - | chr7.2:22275519-22275538 | MS.gene41714:intron | 25.0% |
| !!! | TATTTTGGAAGTGCATAATT+TGG | - | chr7.2:22275297-22275316 | MS.gene41714:intron | 25.0% |
| !!! | TTTTGAGTAGGAATTTACAT+TGG | + | chr7.2:22274139-22274158 | None:intergenic | 25.0% |
| AGTCAAAATAACAAAAGGAG+AGG | + | chr7.2:22275997-22276016 | None:intergenic | 30.0% | |
| AGTCAGTTTACTGAAATTTC+AGG | - | chr7.2:22275876-22275895 | MS.gene41714:intron | 30.0% | |
| CATTACATGTTTCTTTAGAC+AGG | + | chr7.2:22275333-22275352 | None:intergenic | 30.0% | |
| CCAGATCATACTAATTGTAT+AGG | + | chr7.2:22275217-22275236 | None:intergenic | 30.0% | |
| CCTATACAATTAGTATGATC+TGG | - | chr7.2:22275214-22275233 | MS.gene41714:intron | 30.0% | |
| GAAAAATTGGGGGAAAAATT+AGG | + | chr7.2:22274020-22274039 | None:intergenic | 30.0% | |
| GTCAAAATAACAAAAGGAGA+GGG | + | chr7.2:22275996-22276015 | None:intergenic | 30.0% | |
| TCATTGACAAAGTAGGAAAA+GGG | + | chr7.2:22275444-22275463 | None:intergenic | 30.0% | |
| TTCATTGACAAAGTAGGAAA+AGG | + | chr7.2:22275445-22275464 | None:intergenic | 30.0% | |
| ! | TTCTTTTCGCATTTTCTCAA+TGG | + | chr7.2:22274428-22274447 | None:intergenic | 30.0% |
| !! | CTGAAATTTCAGGTATCTTT+TGG | - | chr7.2:22275886-22275905 | MS.gene41714:intron | 30.0% |
| !!! | ATCATCATTTTTTGTTGGTG+TGG | - | chr7.2:22274260-22274279 | MS.gene41714:intron | 30.0% |
| !!! | GGATTGTTGTTTTGGAATTT+AGG | - | chr7.2:22275389-22275408 | MS.gene41714:intron | 30.0% |
| AAGAAACAGCAAAAGCAAAC+AGG | - | chr7.2:22275368-22275387 | MS.gene41714:intron | 35.0% | |
| AAGCTATGATAAACCAGACA+AGG | - | chr7.2:22274299-22274318 | MS.gene41714:intron | 35.0% | |
| AATCGAAGAGACTTGATTAC+AGG | - | chr7.2:22275630-22275649 | MS.gene41714:CDS | 35.0% | |
| ACACAGTATGTAGGTTCATT+TGG | + | chr7.2:22275752-22275771 | None:intergenic | 35.0% | |
| AGCTTAAACAAGAAGAACGA+TGG | + | chr7.2:22274829-22274848 | None:intergenic | 35.0% | |
| ATAGCATTTATAAGGCTCGA+GGG | - | chr7.2:22274571-22274590 | MS.gene41714:intron | 35.0% | |
| ATATGACACAATTGTCCACA+AGG | + | chr7.2:22275832-22275851 | None:intergenic | 35.0% | |
| ATCGAAGAGACTTGATTACA+GGG | - | chr7.2:22275631-22275650 | MS.gene41714:CDS | 35.0% | |
| ATGATTGCAGATCCTATCTT+GGG | - | chr7.2:22274959-22274978 | MS.gene41714:CDS | 35.0% | |
| ATGCATAACCAGAAGCAATA+TGG | + | chr7.2:22275002-22275021 | None:intergenic | 35.0% | |
| ATTGAGTTTATGCACTGAGA+AGG | - | chr7.2:22274471-22274490 | MS.gene41714:CDS | 35.0% | |
| CATTGACAAAGTAGGAAAAG+GGG | + | chr7.2:22275443-22275462 | None:intergenic | 35.0% | |
| GAAAATGCGAAAAGAAATCG+AGG | - | chr7.2:22274432-22274451 | MS.gene41714:CDS | 35.0% | |
| GCATGATATCCAAAGAGTAA+TGG | - | chr7.2:22274624-22274643 | MS.gene41714:intron | 35.0% | |
| GGATCATATAGTCCTTCTTA+TGG | + | chr7.2:22275703-22275722 | None:intergenic | 35.0% | |
| GTAGGTTCATTTGGATCAAT+GGG | + | chr7.2:22275743-22275762 | None:intergenic | 35.0% | |
| TAAGGCAATCCATTACTCTT+TGG | + | chr7.2:22274636-22274655 | None:intergenic | 35.0% | |
| TAATCAAGTCTCTTCGATTG+AGG | + | chr7.2:22275629-22275648 | None:intergenic | 35.0% | |
| TACATACTGTGTTTGTCATC+AGG | - | chr7.2:22275760-22275779 | MS.gene41714:CDS | 35.0% | |
| TATAGCATTTATAAGGCTCG+AGG | - | chr7.2:22274570-22274589 | MS.gene41714:intron | 35.0% | |
| TGATGACAAACACAGTATGT+AGG | + | chr7.2:22275761-22275780 | None:intergenic | 35.0% | |
| TGTAGGTTCATTTGGATCAA+TGG | + | chr7.2:22275744-22275763 | None:intergenic | 35.0% | |
| TTAGACCAACACATGAATAG+TGG | + | chr7.2:22276066-22276085 | None:intergenic | 35.0% | |
| ! | TATAGTTTCAAGTCTCCTTG+TGG | - | chr7.2:22275814-22275833 | MS.gene41714:intron | 35.0% |
| !! | AGAGTAATGGATTGCCTTAA+TGG | - | chr7.2:22274637-22274656 | MS.gene41714:intron | 35.0% |
| !! | ATGGGTTGATCAATATCCAT+AGG | + | chr7.2:22275725-22275744 | None:intergenic | 35.0% |
| !! | TCTGCTTTAAGTTGTTTGAG+AGG | - | chr7.2:22274923-22274942 | MS.gene41714:intron | 35.0% |
| !! | TGGGTTGATCAATATCCATA+GGG | + | chr7.2:22275724-22275743 | None:intergenic | 35.0% |
| !!! | AGCAAACAGGATTGTTGTTT+TGG | - | chr7.2:22275381-22275400 | MS.gene41714:intron | 35.0% |
| !!! | TTGTTTTAGCTTTGATGGCT+TGG | - | chr7.2:22274531-22274550 | MS.gene41714:intron | 35.0% |
| !!! | TTTTCAGGTTTAGGGACAAT+AGG | + | chr7.2:22275584-22275603 | None:intergenic | 35.0% |
| AAAAGAAATCGAGGCGAATC+AGG | - | chr7.2:22274441-22274460 | MS.gene41714:CDS | 40.0% | |
| AACACAAGAGACAAGGTTCA+AGG | - | chr7.2:22276084-22276103 | MS.gene41714:intron | 40.0% | |
| ACACAAGAGACAAGGTTCAA+GGG | - | chr7.2:22276085-22276104 | MS.gene41714:intron | 40.0% | |
| AGTAGGAAAAGGGGAATTTC+AGG | + | chr7.2:22275434-22275453 | None:intergenic | 40.0% | |
| AGTCTACGTCGATGACTATT+TGG | - | chr7.2:22273949-22273968 | MS.gene41714:CDS | 40.0% | |
| ATTCACATGACTCCCAAGAT+AGG | + | chr7.2:22274974-22274993 | None:intergenic | 40.0% | |
| CCATGTAAAACGACTTGATG+AGG | - | chr7.2:22275087-22275106 | MS.gene41714:intron | 40.0% | |
| CTTTAGATCTTCAGCGAAGT+AGG | + | chr7.2:22275119-22275138 | None:intergenic | 40.0% | |
| GAAGGACTATATGATCCCTA+TGG | - | chr7.2:22275706-22275725 | MS.gene41714:CDS | 40.0% | |
| GATGATTGCAGATCCTATCT+TGG | - | chr7.2:22274958-22274977 | MS.gene41714:CDS | 40.0% | |
| GTAGGAAAAGGGGAATTTCA+GGG | + | chr7.2:22275433-22275452 | None:intergenic | 40.0% | |
| GTGGTAGTAATCTGCAAGTT+GGG | + | chr7.2:22276123-22276142 | None:intergenic | 40.0% | |
| GTTTAGGGACAATAGGAAGT+GGG | + | chr7.2:22275577-22275596 | None:intergenic | 40.0% | |
| TAGGAAAAGGGGAATTTCAG+GGG | + | chr7.2:22275432-22275451 | None:intergenic | 40.0% | |
| TCACTGTACAATTCATCTCG+AGG | - | chr7.2:22274799-22274818 | MS.gene41714:intron | 40.0% | |
| TGGGGGAAAAATTAGGGTTA+GGG | + | chr7.2:22274013-22274032 | None:intergenic | 40.0% | |
| TGGTTCCACTATTCATGTGT+TGG | - | chr7.2:22276058-22276077 | MS.gene41714:intron | 40.0% | |
| TGTGGTAGTAATCTGCAAGT+TGG | + | chr7.2:22276124-22276143 | None:intergenic | 40.0% | |
| TTGGGGGAAAAATTAGGGTT+AGG | + | chr7.2:22274014-22274033 | None:intergenic | 40.0% | |
| TTGGTCTAACACAAGAGACA+AGG | - | chr7.2:22276077-22276096 | MS.gene41714:intron | 40.0% | |
| TTTAGGGACAATAGGAAGTG+GGG | + | chr7.2:22275576-22275595 | None:intergenic | 40.0% | |
| ! | TTCGCTGAAGATCTAAAGCA+AGG | - | chr7.2:22275121-22275140 | MS.gene41714:intron | 40.0% |
| !! | AGCAGACAAAGTACTGTATG+GGG | - | chr7.2:22274323-22274342 | MS.gene41714:CDS | 40.0% |
| !! | ATGCACTGAGAAGGTTTTGT+TGG | - | chr7.2:22274480-22274499 | MS.gene41714:CDS | 40.0% |
| !! | CAGCAGACAAAGTACTGTAT+GGG | - | chr7.2:22274322-22274341 | MS.gene41714:CDS | 40.0% |
| !! | CCTCATCAAGTCGTTTTACA+TGG | + | chr7.2:22275090-22275109 | None:intergenic | 40.0% |
| !! | TGTTATTCTTGATAGTGCCG+AGG | - | chr7.2:22276028-22276047 | MS.gene41714:intron | 40.0% |
| AGACAAGGTTCAAGGGAAAG+TGG | - | chr7.2:22276092-22276111 | MS.gene41714:intron | 45.0% | |
| GGTTTAGGGACAATAGGAAG+TGG | + | chr7.2:22275578-22275597 | None:intergenic | 45.0% | |
| TAGTCCTTCTTATGGCTTCC+TGG | + | chr7.2:22275695-22275714 | None:intergenic | 45.0% | |
| TCGTTCATCGAGTTCACGAA+CGG | + | chr7.2:22274114-22274133 | None:intergenic | 45.0% | |
| TGAACTTTGCTCTCTTGTGC+TGG | - | chr7.2:22275947-22275966 | MS.gene41714:CDS | 45.0% | |
| TGATTACAGGGAGAGAGACT+GGG | - | chr7.2:22275643-22275662 | MS.gene41714:CDS | 45.0% | |
| TGTATGGGGTTCTCATCTCA+CGG | - | chr7.2:22274337-22274356 | MS.gene41714:CDS | 45.0% | |
| TTAGGGACAATAGGAAGTGG+GGG | + | chr7.2:22275575-22275594 | None:intergenic | 45.0% | |
| TTGATTACAGGGAGAGAGAC+TGG | - | chr7.2:22275642-22275661 | MS.gene41714:CDS | 45.0% | |
| ! | CTTTGATGGCTTGGACAAGA+GGG | - | chr7.2:22274540-22274559 | MS.gene41714:intron | 45.0% |
| ! | GGGCAATGTATTGGCATCTA+TGG | + | chr7.2:22274066-22274085 | None:intergenic | 45.0% |
| !! | GCAGCAGACAAAGTACTGTA+TGG | - | chr7.2:22274321-22274340 | MS.gene41714:CDS | 45.0% |
| !! | TATTCTTGATAGTGCCGAGG+AGG | - | chr7.2:22276031-22276050 | MS.gene41714:intron | 45.0% |
| !! | TCATCTCACGGCTCTAAGAA+GGG | - | chr7.2:22274349-22274368 | MS.gene41714:CDS | 45.0% |
| !!! | TAAAAAAAGTAAATTTTTTA+GGG | + | chr7.2:22274177-22274196 | None:intergenic | 5.0% |
| AAGCTCAGCGGGCAATGTAT+TGG | + | chr7.2:22274075-22274094 | None:intergenic | 50.0% | |
| ACTTTGTCTGCTGCCTTGTC+TGG | + | chr7.2:22274315-22274334 | None:intergenic | 50.0% | |
| AGTGGAACCATTCACCTCCT+CGG | + | chr7.2:22276048-22276067 | None:intergenic | 50.0% | |
| GGCACGACAAGCATATGAAC+TGG | - | chr7.2:22274501-22274520 | MS.gene41714:CDS | 50.0% | |
| TCCACCAGGAAGCCATAAGA+AGG | - | chr7.2:22275688-22275707 | MS.gene41714:CDS | 50.0% | |
| TCCTTCTTATGGCTTCCTGG+TGG | + | chr7.2:22275692-22275711 | None:intergenic | 50.0% | |
| TTCTTATGGCTTCCTGGTGG+AGG | + | chr7.2:22275689-22275708 | None:intergenic | 50.0% | |
| TTTGAGCTAATGCCTCCACC+AGG | - | chr7.2:22275674-22275693 | MS.gene41714:CDS | 50.0% | |
| ! | GCTTTGATGGCTTGGACAAG+AGG | - | chr7.2:22274539-22274558 | MS.gene41714:intron | 50.0% |
| ! | TCCCTAAACCTGAAAAGCGC+AGG | - | chr7.2:22275588-22275607 | MS.gene41714:CDS | 50.0% |
| !! | AGAAGTCTCTGAAGCTCAGC+GGG | + | chr7.2:22274086-22274105 | None:intergenic | 50.0% |
| !! | CTCATCTCACGGCTCTAAGA+AGG | - | chr7.2:22274348-22274367 | MS.gene41714:CDS | 50.0% |
| !! | GAGAAGTCTCTGAAGCTCAG+CGG | + | chr7.2:22274087-22274106 | None:intergenic | 50.0% |
| !!! | GCCTGCGCTTTTCAGGTTTA+GGG | + | chr7.2:22275592-22275611 | None:intergenic | 50.0% |
| !!! | TGCCTGCGCTTTTCAGGTTT+AGG | + | chr7.2:22275593-22275612 | None:intergenic | 50.0% |
| GGAAGTGGGGGAAGAATTGC+TGG | + | chr7.2:22275563-22275582 | None:intergenic | 55.0% | |
| ! | GAAAAGCGCAGGCACGCATA+TGG | - | chr7.2:22275599-22275618 | MS.gene41714:CDS | 55.0% |
| ! | GATAGTGCCGAGGAGGTGAA+TGG | - | chr7.2:22276038-22276057 | MS.gene41714:intron | 55.0% |
| ! | TATGCGTGCCTGCGCTTTTC+AGG | + | chr7.2:22275599-22275618 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 22273929 | 22276153 | 22273929 | ID=MS.gene41714 |
| chr7.2 | mRNA | 22273929 | 22276153 | 22273929 | ID=MS.gene41714.t1;Parent=MS.gene41714 |
| chr7.2 | exon | 22276108 | 22276153 | 22276108 | ID=MS.gene41714.t1.exon1;Parent=MS.gene41714.t1 |
| chr7.2 | CDS | 22276108 | 22276153 | 22276108 | ID=cds.MS.gene41714.t1;Parent=MS.gene41714.t1 |
| chr7.2 | exon | 22275942 | 22276013 | 22275942 | ID=MS.gene41714.t1.exon2;Parent=MS.gene41714.t1 |
| chr7.2 | CDS | 22275942 | 22276013 | 22275942 | ID=cds.MS.gene41714.t1;Parent=MS.gene41714.t1 |
| chr7.2 | exon | 22275560 | 22275780 | 22275560 | ID=MS.gene41714.t1.exon3;Parent=MS.gene41714.t1 |
| chr7.2 | CDS | 22275560 | 22275780 | 22275560 | ID=cds.MS.gene41714.t1;Parent=MS.gene41714.t1 |
| chr7.2 | exon | 22274940 | 22275003 | 22274940 | ID=MS.gene41714.t1.exon4;Parent=MS.gene41714.t1 |
| chr7.2 | CDS | 22274940 | 22275003 | 22274940 | ID=cds.MS.gene41714.t1;Parent=MS.gene41714.t1 |
| chr7.2 | exon | 22274301 | 22274545 | 22274301 | ID=MS.gene41714.t1.exon5;Parent=MS.gene41714.t1 |
| chr7.2 | CDS | 22274301 | 22274545 | 22274301 | ID=cds.MS.gene41714.t1;Parent=MS.gene41714.t1 |
| chr7.2 | exon | 22274146 | 22274184 | 22274146 | ID=MS.gene41714.t1.exon6;Parent=MS.gene41714.t1 |
| chr7.2 | CDS | 22274146 | 22274184 | 22274146 | ID=cds.MS.gene41714.t1;Parent=MS.gene41714.t1 |
| chr7.2 | exon | 22273929 | 22274039 | 22273929 | ID=MS.gene41714.t1.exon7;Parent=MS.gene41714.t1 |
| chr7.2 | CDS | 22273929 | 22274039 | 22273929 | ID=cds.MS.gene41714.t1;Parent=MS.gene41714.t1 |
| Gene Sequence |
| Protein sequence |
