AlfalfaGEDB | MS.gene41816

M. sativa cultivar XinJiangDaYe / MS.gene41816

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41816.t1	ABN08479.1	98.5	197	3	0	1	197	1	197	4.40E-89	337.4

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41816.t1	Q6X7J3	48.3	209	83	6	5	195	1	202	1.5e-24	114.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41816.t1	B7FL74	98.5	197	3	0	1	197	1	197	3.2e-89	337.4

TFs/TRs:

Gene ID	Type	Classification
MS.gene41816.t1	TF	HB-WOX

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41816.t1	MTR_7g086940	98.985	197	2	0	1	197	1	197	3.70e-146	407
MS.gene41816.t1	MTR_6g027390	90.667	75	7	0	20	94	24	98	1.15e-35	127
MS.gene41816.t1	MTR_7g025010	59.524	84	34	0	18	101	37	120	1.43e-29	114
MS.gene41816.t1	MTR_2g015000	62.500	80	29	1	13	91	39	118	2.52e-28	110
MS.gene41816.t1	MTR_4g088070	61.905	63	24	0	26	88	27	89	8.39e-23	94.7
MS.gene41816.t1	MTR_4g088080	54.667	75	34	0	26	100	38	112	1.64e-22	92.8
MS.gene41816.t1	MTR_4g084550	40.244	82	47	1	27	106	63	144	1.09e-17	77.4
MS.gene41816.t1	MTR_8g107210	44.595	74	40	1	25	97	93	166	4.10e-15	72.8
MS.gene41816.t1	MTR_1g115315	48.387	62	32	0	26	87	83	144	1.81e-14	70.1
MS.gene41816.t1	MTR_4g063735	27.737	137	98	1	28	163	25	161	3.00e-14	69.3
MS.gene41816.t1	MTR_1g115315	48.387	62	32	0	26	87	83	144	3.08e-14	69.3
MS.gene41816.t1	MTR_3g115620	47.619	63	33	0	26	88	80	142	9.08e-14	67.4
MS.gene41816.t1	MTR_1g019130	38.636	88	51	1	3	90	68	152	7.49e-13	65.1
MS.gene41816.t1	MTR_5g021930	30.719	153	93	4	27	172	29	175	7.85e-13	65.9
MS.gene41816.t1	MTR_5g081990	33.333	87	58	0	5	91	10	96	8.92e-13	64.3
MS.gene41816.t1	MTR_7g060630	40.299	67	40	0	24	90	4	70	9.30e-13	64.7
MS.gene41816.t1	MTR_1g019130	38.636	88	51	1	3	90	68	152	2.28e-12	63.9
MS.gene41816.t1	MTR_7g023810	43.077	65	37	0	25	89	65	129	6.15e-12	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41816.t1	AT3G03660	49.010	202	78	6	12	195	8	202	5.36e-36	127
MS.gene41816.t1	AT3G03660	49.010	202	78	6	12	195	8	202	2.31e-35	126
MS.gene41816.t1	AT3G03660	72.727	77	12	1	12	79	8	84	4.29e-34	123
MS.gene41816.t1	AT3G03660	72.727	77	12	1	12	79	8	84	1.41e-33	122
MS.gene41816.t1	AT5G17810	83.562	73	12	0	19	91	12	84	5.47e-33	119
MS.gene41816.t1	AT5G17810	83.562	73	12	0	19	91	12	84	6.16e-33	119
MS.gene41816.t1	AT5G17810	83.562	73	12	0	19	91	12	84	6.16e-33	119
MS.gene41816.t1	AT2G33880	61.644	73	28	0	20	92	47	119	9.27e-27	105
MS.gene41816.t1	AT2G33880	61.644	73	28	0	20	92	47	119	1.12e-26	105
MS.gene41816.t1	AT5G45980	51.807	83	40	0	12	94	39	121	4.03e-25	100
MS.gene41816.t1	AT4G35550	46.154	65	35	0	25	89	96	160	1.51e-14	70.5
MS.gene41816.t1	AT1G46480	38.202	89	46	2	4	90	71	152	1.02e-13	67.0
MS.gene41816.t1	AT1G20700	42.857	70	40	0	25	94	30	99	1.24e-13	65.9
MS.gene41816.t1	AT5G59340	36.111	72	46	0	27	98	13	84	1.83e-13	67.4
MS.gene41816.t1	AT1G20700	42.857	70	40	0	25	94	92	161	2.77e-13	65.9
MS.gene41816.t1	AT1G20700	42.857	70	40	0	25	94	92	161	2.81e-13	66.2
MS.gene41816.t1	AT3G18010	40.580	69	40	1	25	92	73	141	4.27e-13	67.0
MS.gene41816.t1	AT1G46480	36.735	98	53	2	4	99	71	161	6.78e-13	65.9
MS.gene41816.t1	AT2G28610	42.647	68	38	1	24	90	3	70	8.93e-13	65.1
MS.gene41816.t1	AT5G05770	33.784	74	49	0	28	101	29	102	2.67e-12	61.6
MS.gene41816.t1	AT2G17950	42.188	64	36	1	27	89	37	100	3.60e-12	63.9
MS.gene41816.t1	AT3G11260	39.062	64	39	0	28	91	24	87	4.34e-12	62.4
MS.gene41816.t1	AT2G01500	45.455	55	30	0	28	82	61	115	4.24e-11	60.8

Find 0 sgRNAs with CRISPR-Local

Find 66 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	ATTTTGATAGTTTCTTCTTT+TGG	-	51299:42365-42384	MS.gene41816:intergenic	20.0%
!!!	TTTTGATAGTTTCTTCTTTT+GGG	-	51299:42364-42383	MS.gene41816:intergenic	20.0%
!	AGAAAACTTCTTGAGAAATT+CGG	+	51299:42386-42405	MS.gene41816:CDS	25.0%
!	AGAAGAATCATTTAAACAAG+AGG	-	51299:42621-42640	MS.gene41816:intergenic	25.0%
!!	TCTTGTTTAAATGATTCTTC+TGG	+	51299:42620-42639	MS.gene41816:CDS	25.0%
!!	TTTTCAGTTTCTTCTCAAAT+GGG	+	51299:42701-42720	MS.gene41816:CDS	25.0%
!!!	TTTGATAGTTTCTTCTTTTG+GGG	-	51299:42363-42382	MS.gene41816:intergenic	25.0%
	AGAATCATTTAAACAAGAGG+AGG	-	51299:42618-42637	MS.gene41816:intergenic	30.0%
	TAGTTGAAATTAGGAGAAAG+AGG	-	51299:42776-42795	MS.gene41816:intergenic	30.0%
!	GTTTTCAGTTTCTTCTCAAA+TGG	+	51299:42700-42719	MS.gene41816:CDS	30.0%
!	TCAAGTATGAGAATTTGTTC+TGG	-	51299:42311-42330	MS.gene41816:intergenic	30.0%
!!	TTGATAGTTTCTTCTTTTGG+GGG	-	51299:42362-42381	MS.gene41816:intergenic	30.0%
!!!	ATGAGAATTTGTTCTGGTTT+TGG	-	51299:42305-42324	MS.gene41816:intergenic	30.0%
	AAGTGCAATTCCTTGTGATA+TGG	+	51299:42559-42578	MS.gene41816:CDS	35.0%
	ATTTCTTTGCTGATCAAGTG+TGG	-	51299:42495-42514	MS.gene41816:intergenic	35.0%
	TGAAATTAGGAGAAAGAGGA+GGG	-	51299:42772-42791	MS.gene41816:intergenic	35.0%
	TGATCAGCAAAGAAATCAGA+TGG	+	51299:42499-42518	MS.gene41816:CDS	35.0%
	TTGAAATTAGGAGAAAGAGG+AGG	-	51299:42773-42792	MS.gene41816:intergenic	35.0%
!	TTGGTTTGAACCATATCACA+AGG	-	51299:42572-42591	MS.gene41816:intergenic	35.0%
!!	TCTTCTCAAATGGGTTTTCT+TGG	+	51299:42710-42729	MS.gene41816:CDS	35.0%
	AACCACCAAAAACCATGGTT+GGG	-	51299:42595-42614	MS.gene41816:intergenic	40.0%
!	AGTTTTCTCGGAACCATGTT+GGG	-	51299:42258-42277	MS.gene41816:intergenic	40.0%
	AAACTGAACCGGTTAGGTCA+AGG	+	51299:42273-42292	MS.gene41816:CDS	45.0%
	AACAACACTCCAACCCAACA+TGG	+	51299:42242-42261	MS.gene41816:CDS	45.0%
	AACACCACCACATGATGAAG+AGG	-	51299:42651-42670	MS.gene41816:intergenic	45.0%
	ACCAAAAACCATGGTTGGGT+TGG	-	51299:42591-42610	MS.gene41816:intergenic	45.0%
	CCTCAGCAAGTTGTTAACGA+TGG	+	51299:42533-42552	MS.gene41816:CDS	45.0%
	CTTGAGAAATTCGGCAACGT+CGG	+	51299:42395-42414	MS.gene41816:CDS	45.0%
	CTTGAGTCCATCTTCAACAG+TGG	+	51299:42326-42345	MS.gene41816:CDS	45.0%
	GAACCACCAAAAACCATGGT+TGG	-	51299:42596-42615	MS.gene41816:intergenic	45.0%
	GGTGTTCTTAGTGGTCAACA+AGG	+	51299:42665-42684	MS.gene41816:CDS	45.0%
	GGTTCTTCCTCTTCATCATG+TGG	+	51299:42641-42660	MS.gene41816:CDS	45.0%
	GTGATGCTAACGTCTTCTAC+TGG	+	51299:42417-42436	MS.gene41816:CDS	45.0%
	TCTTAGTGGTCAACAAGGCA+TGG	+	51299:42670-42689	MS.gene41816:CDS	45.0%
	TCTTCCTCTTCATCATGTGG+TGG	+	51299:42644-42663	MS.gene41816:CDS	45.0%
	TGGTTCCGAGAAAACTGAAC+CGG	+	51299:42262-42281	MS.gene41816:CDS	45.0%
!	ACCAACCCAACCATGGTTTT+TGG	+	51299:42587-42606	MS.gene41816:CDS	45.0%
!	CAGTTTTCTCGGAACCATGT+TGG	-	51299:42259-42278	MS.gene41816:intergenic	45.0%
!	TCATGTGGTGGTGTTCTTAG+TGG	+	51299:42656-42675	MS.gene41816:CDS	45.0%
!!	AACCCAACCATGGTTTTTGG+TGG	+	51299:42590-42609	MS.gene41816:CDS	45.0%
!!	ATGTTGGGTTGGAGTGTTGT+TGG	-	51299:42243-42262	MS.gene41816:intergenic	45.0%
!!	CCATCGTTAACAACTTGCTG+AGG	-	51299:42536-42555	MS.gene41816:intergenic	45.0%
!!	CCTAACCGGTTCAGTTTTCT+CGG	-	51299:42270-42289	MS.gene41816:intergenic	45.0%
!!	TGTTGGGTTGGAGTGTTGTT+GGG	-	51299:42242-42261	MS.gene41816:intergenic	45.0%
	AGTGGTCAACAAGGCATGGA+TGG	+	51299:42674-42693	MS.gene41816:CDS	50.0%
	CACCATGCCACTGTTGAAGA+TGG	-	51299:42336-42355	MS.gene41816:intergenic	50.0%
	CCGAGAAAACTGAACCGGTT+AGG	+	51299:42267-42286	MS.gene41816:CDS	50.0%
	GGAGGAACCACCAAAAACCA+TGG	-	51299:42600-42619	MS.gene41816:intergenic	50.0%
	GGTTCAAACCAACCCAACCA+TGG	+	51299:42580-42599	MS.gene41816:CDS	50.0%
	GTCCATCTTCAACAGTGGCA+TGG	+	51299:42331-42350	MS.gene41816:CDS	50.0%
	TTCTCGGAACCATGTTGGGT+TGG	-	51299:42254-42273	MS.gene41816:intergenic	50.0%
!	AGAGGAGGGCACAAAAGTGA+TGG	-	51299:42758-42777	MS.gene41816:intergenic	50.0%
!!	GTTGGGTTGGAGTGTTGTTG+GGG	-	51299:42241-42260	MS.gene41816:intergenic	50.0%
!!	TCTACTGGTTCCAAAACCGC+CGG	+	51299:42432-42451	MS.gene41816:CDS	50.0%
!!	TTGGGTTGGAGTGTTGTTGG+GGG	-	51299:42240-42259	MS.gene41816:intergenic	50.0%
	CTGAACCGGTTAGGTCAAGG+TGG	+	51299:42276-42295	MS.gene41816:CDS	55.0%
	GGTGTCCACCTTGACCTAAC+CGG	-	51299:42284-42303	MS.gene41816:intergenic	55.0%
!	GAGATCTAGACCGGCGGTTT+TGG	-	51299:42445-42464	MS.gene41816:intergenic	55.0%
!!	TGGGTTGGAGTGTTGTTGGG+GGG	-	51299:42239-42258	MS.gene41816:intergenic	55.0%
	CAAGTGTGGCCTGCTGCATC+TGG	-	51299:42481-42500	MS.gene41816:intergenic	60.0%
	CCTGCTGCATCTGGCGTTGT+CGG	-	51299:42472-42491	MS.gene41816:intergenic	60.0%
!!	GGGTTGGAGTGTTGTTGGGG+GGG	-	51299:42238-42257	MS.gene41816:intergenic	60.0%
	CCGACAACGCCAGATGCAGC+AGG	+	51299:42469-42488	MS.gene41816:CDS	65.0%
	GCTGCATCTGGCGTTGTCGG+CGG	-	51299:42469-42488	MS.gene41816:intergenic	65.0%
	GTCGGCGGCGAGATCTAGAC+CGG	-	51299:42454-42473	MS.gene41816:intergenic	65.0%
	GGCGGCGAGATCTAGACCGG+CGG	-	51299:42451-42470	MS.gene41816:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
51299	gene	42212	42803	42212	ID=MS.gene41816
51299	mRNA	42212	42803	42212	ID=MS.gene41816.t1;Parent=MS.gene41816
51299	exon	42212	42803	42212	ID=MS.gene41816.t1.exon1;Parent=MS.gene41816.t1
51299	CDS	42212	42803	42212	ID=cds.MS.gene41816.t1;Parent=MS.gene41816.t1

Gene Sequence

>MS.gene41816

ATGGAAGATAAGATGCAACATGACCCCCCCAACAACACTCCAACCCAACATGGTTCCGAGAAAACTGAACCGGTTAGGTCAAGGTGGACACCAAAACCAGAACAAATTCTCATACTTGAGTCCATCTTCAACAGTGGCATGGTGAATCCCCCAAAAGAAGAAACTATCAAAATAAGAAAACTTCTTGAGAAATTCGGCAACGTCGGTGATGCTAACGTCTTCTACTGGTTCCAAAACCGCCGGTCTAGATCTCGCCGCCGACAACGCCAGATGCAGCAGGCCACACTTGATCAGCAAAGAAATCAGATGGCTATGATGCAGCCTCAGCAAGTTGTTAACGATGGTGCAAGTGCAATTCCTTGTGATATGGTTCAAACCAACCCAACCATGGTTTTTGGTGGTTCCTCCTCTTGTTTAAATGATTCTTCTGGTTCTTCCTCTTCATCATGTGGTGGTGTTCTTAGTGGTCAACAAGGCATGGATGGTTTGTTTTCAGTTTCTTCTCAAATGGGTTTTCTTGGAGTTGATCAAAATTTAGCTGCACCATCACTTTTGTGCCCTCCTCTTTCTCCTAATTTCAACTATCACTCTG

Protein sequence

>MS.gene41816.t1

MEDKMQHDPPNNTPTQHGSEKTEPVRSRWTPKPEQILILESIFNSGMVNPPKEETIKIRKLLEKFGNVGDANVFYWFQNRRSRSRRRQRQMQQATLDQQRNQMAMMQPQQVVNDGASAIPCDMVQTNPTMVFGGSSSCLNDSSGSSSSSCGGVLSGQQGMDGLFSVSSQMGFLGVDQNLAAPSLLCPPLSPNFNYHS