Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41817.t1 | ABN08479.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 1.10E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41817.t1 | Q6X7J3 | 49.5 | 279 | 107 | 7 | 5 | 265 | 1 | 263 | 4.1e-46 | 186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41817.t1 | B7FL74 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 8.0e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41817.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41817.t1 | MTR_7g086940 | 97.736 | 265 | 6 | 0 | 1 | 265 | 1 | 265 | 0.0 | 540 |
| MS.gene41817.t1 | MTR_6g027390 | 49.296 | 284 | 92 | 7 | 20 | 265 | 24 | 293 | 3.48e-59 | 190 |
| MS.gene41817.t1 | MTR_7g025010 | 59.524 | 84 | 34 | 0 | 18 | 101 | 37 | 120 | 2.82e-29 | 116 |
| MS.gene41817.t1 | MTR_2g015000 | 62.500 | 80 | 29 | 1 | 13 | 91 | 39 | 118 | 7.67e-28 | 111 |
| MS.gene41817.t1 | MTR_2g015000 | 41.538 | 65 | 38 | 0 | 201 | 265 | 341 | 405 | 5.39e-13 | 68.6 |
| MS.gene41817.t1 | MTR_4g088070 | 61.905 | 63 | 24 | 0 | 26 | 88 | 27 | 89 | 2.68e-22 | 95.5 |
| MS.gene41817.t1 | MTR_4g088080 | 54.667 | 75 | 34 | 0 | 26 | 100 | 38 | 112 | 5.99e-22 | 93.2 |
| MS.gene41817.t1 | MTR_4g084550 | 40.244 | 82 | 47 | 1 | 27 | 106 | 63 | 144 | 3.13e-17 | 77.8 |
| MS.gene41817.t1 | MTR_8g107210 | 44.595 | 74 | 40 | 1 | 25 | 97 | 93 | 166 | 1.07e-14 | 73.2 |
| MS.gene41817.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 3.74e-14 | 70.9 |
| MS.gene41817.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 5.42e-14 | 70.5 |
| MS.gene41817.t1 | MTR_4g063735 | 27.737 | 137 | 98 | 1 | 28 | 163 | 25 | 161 | 5.75e-14 | 70.1 |
| MS.gene41817.t1 | MTR_3g115620 | 47.619 | 63 | 33 | 0 | 26 | 88 | 80 | 142 | 1.57e-13 | 68.2 |
| MS.gene41817.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 1.95e-12 | 65.5 |
| MS.gene41817.t1 | MTR_5g021930 | 30.719 | 153 | 93 | 4 | 27 | 172 | 29 | 175 | 2.36e-12 | 66.2 |
| MS.gene41817.t1 | MTR_5g081990 | 33.333 | 87 | 58 | 0 | 5 | 91 | 10 | 96 | 3.22e-12 | 63.9 |
| MS.gene41817.t1 | MTR_7g060630 | 40.299 | 67 | 40 | 0 | 24 | 90 | 4 | 70 | 3.37e-12 | 64.3 |
| MS.gene41817.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 9.93e-12 | 63.5 |
| MS.gene41817.t1 | MTR_7g023810 | 43.077 | 65 | 37 | 0 | 25 | 89 | 65 | 129 | 1.77e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41817.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 9.38e-63 | 198 |
| MS.gene41817.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 5.52e-62 | 197 |
| MS.gene41817.t1 | AT3G03660 | 47.826 | 299 | 97 | 9 | 12 | 265 | 8 | 292 | 2.11e-59 | 191 |
| MS.gene41817.t1 | AT3G03660 | 47.492 | 299 | 98 | 9 | 12 | 265 | 8 | 292 | 1.14e-58 | 189 |
| MS.gene41817.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene41817.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene41817.t1 | AT5G17810 | 46.792 | 265 | 109 | 8 | 19 | 265 | 12 | 262 | 4.56e-55 | 178 |
| MS.gene41817.t1 | AT5G45980 | 31.271 | 291 | 158 | 9 | 12 | 265 | 39 | 324 | 2.55e-34 | 126 |
| MS.gene41817.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 2.91e-26 | 105 |
| MS.gene41817.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 3.74e-11 | 63.2 |
| MS.gene41817.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 3.39e-26 | 105 |
| MS.gene41817.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 4.67e-11 | 62.8 |
| MS.gene41817.t1 | AT4G35550 | 46.875 | 64 | 34 | 0 | 25 | 88 | 96 | 159 | 2.79e-14 | 71.2 |
| MS.gene41817.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 30 | 99 | 2.59e-13 | 66.2 |
| MS.gene41817.t1 | AT5G59340 | 36.111 | 72 | 46 | 0 | 27 | 98 | 13 | 84 | 5.39e-13 | 67.4 |
| MS.gene41817.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.62e-13 | 66.6 |
| MS.gene41817.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.78e-13 | 66.6 |
| MS.gene41817.t1 | AT1G46480 | 38.202 | 89 | 46 | 2 | 4 | 90 | 71 | 152 | 6.58e-13 | 66.2 |
| MS.gene41817.t1 | AT3G18010 | 40.580 | 69 | 40 | 1 | 25 | 92 | 73 | 141 | 1.10e-12 | 67.4 |
| MS.gene41817.t1 | AT2G28610 | 40.625 | 64 | 38 | 0 | 27 | 90 | 7 | 70 | 3.06e-12 | 65.1 |
| MS.gene41817.t1 | AT1G46480 | 36.735 | 98 | 53 | 2 | 4 | 99 | 71 | 161 | 5.28e-12 | 64.7 |
| MS.gene41817.t1 | AT2G17950 | 42.188 | 64 | 36 | 1 | 27 | 89 | 37 | 100 | 8.79e-12 | 64.3 |
| MS.gene41817.t1 | AT5G05770 | 33.784 | 74 | 49 | 0 | 28 | 101 | 29 | 102 | 1.19e-11 | 60.8 |
| MS.gene41817.t1 | AT3G11260 | 39.062 | 64 | 39 | 0 | 28 | 91 | 24 | 87 | 1.26e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7.3:-22073681 | None:intergenic |
| TGCCAATCCTGTTATATTAC+TGG | 0.287058 | 7.3:-22075407 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7.3:+22073519 | MS.gene41817:CDS |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7.3:-22073138 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7.3:+22073285 | MS.gene41817:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7.3:-22073137 | None:intergenic |
| ATGAGAATTTGTTCTGGTTT+TGG | 0.333304 | 7.3:-22073201 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7.3:-22073341 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7.3:-22073377 | None:intergenic |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7.3:-22073139 | None:intergenic |
| CCATGGTGAAAGCTACTTTC+TGG | 0.370838 | 7.3:+22075576 | MS.gene41817:CDS |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7.3:-22073134 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7.3:-22073136 | None:intergenic |
| CTAGACATCAAAACAGTGTT+TGG | 0.400410 | 7.3:+22075475 | MS.gene41817:CDS |
| CCATGTTCATTTGTGGGAAC+TGG | 0.410202 | 7.3:-22075532 | None:intergenic |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7.3:+22073555 | MS.gene41817:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7.3:-22073368 | None:intergenic |
| TCAAGTATGAGAATTTGTTC+TGG | 0.415342 | 7.3:-22073207 | None:intergenic |
| GAAGGTGCCAGTAATATAAC+AGG | 0.422710 | 7.3:+22075400 | MS.gene41817:CDS |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7.3:+22073368 | MS.gene41817:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7.3:-22073180 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7.3:-22073135 | None:intergenic |
| CAAGATGCCATGTTCATTTG+TGG | 0.439026 | 7.3:-22075539 | None:intergenic |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7.3:+22075425 | MS.gene41817:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7.3:+22073458 | MS.gene41817:CDS |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7.3:+22075424 | MS.gene41817:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7.3:+22073166 | MS.gene41817:CDS |
| TGGTATTACTAAGGATATGA+AGG | 0.475491 | 7.3:+22075382 | MS.gene41817:intron |
| AAGATGCCATGTTCATTTGT+GGG | 0.479061 | 7.3:-22075538 | None:intergenic |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7.3:-22073672 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7.3:-22073232 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7.3:+22073540 | MS.gene41817:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7.3:+22075505 | MS.gene41817:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7.3:+22073681 | MS.gene41817:CDS |
| TGCCAGTAATATAACAGGAT+TGG | 0.512001 | 7.3:+22075405 | MS.gene41817:CDS |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7.3:-22073150 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7.3:+22073161 | MS.gene41817:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7.3:+22073316 | MS.gene41817:CDS |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7.3:+22073573 | MS.gene41817:CDS |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7.3:-22073668 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7.3:+22073294 | MS.gene41817:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7.3:-22073391 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7.3:-22073547 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7.3:-22073669 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+GGG | 0.569187 | 7.3:+22075448 | MS.gene41817:CDS |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7.3:-22073365 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7.3:+22073543 | MS.gene41817:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7.3:-22073517 | None:intergenic |
| GTCGGCGGCGAGATCTAGAC+CGG | 0.586191 | 7.3:-22073350 | None:intergenic |
| CCAGTTCCCACAAATGAACA+TGG | 0.590552 | 7.3:+22075532 | MS.gene41817:CDS |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7.3:+22073398 | MS.gene41817:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7.3:+22073569 | MS.gene41817:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7.3:-22073514 | None:intergenic |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7.3:-22073654 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7.3:+22073172 | MS.gene41817:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7.3:+22073141 | MS.gene41817:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7.3:+22073230 | MS.gene41817:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7.3:+22073331 | MS.gene41817:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7.3:+22073225 | MS.gene41817:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7.3:+22073479 | MS.gene41817:CDS |
| CCTCAGCAAGTTGTTAACGA+TGG | 0.634528 | 7.3:+22073432 | MS.gene41817:CDS |
| CCATCGTTAACAACTTGCTG+AGG | 0.647740 | 7.3:-22073432 | None:intergenic |
| TGTGGGAACTGGCACACCAG+AGG | 0.654766 | 7.3:-22075521 | None:intergenic |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7.3:-22073468 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7.3:+22073564 | MS.gene41817:CDS |
| GATTGCAACAGAAATTCAAG+CGG | 0.666279 | 7.3:+22075447 | MS.gene41817:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7.3:+22073175 | MS.gene41817:CDS |
| GGCGGCGAGATCTAGACCGG+CGG | 0.697708 | 7.3:-22073347 | None:intergenic |
| TTGATTCAGAGCTTGCACCA+TGG | 0.703765 | 7.3:+22075559 | MS.gene41817:CDS |
| CCAGAAAGTAGCTTTCACCA+TGG | 0.713476 | 7.3:-22075576 | None:intergenic |
| TTGCAACAGAAATTCAAGCG+GGG | 0.718011 | 7.3:+22075449 | MS.gene41817:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATATTTTTAAAAAAAA+GGG | + | chr7.3:22074777-22074796 | MS.gene41817:intron | 0.0% |
| !!! | TTATAATATTTTTAAAAAAA+AGG | + | chr7.3:22074776-22074795 | MS.gene41817:intron | 0.0% |
| !! | AAAAAAAAAAAACATAATCT+AGG | - | chr7.3:22074633-22074652 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACATAATCTA+GGG | - | chr7.3:22074632-22074651 | None:intergenic | 10.0% |
| !! | TAACAAATAAAATTTAACAT+CGG | - | chr7.3:22074928-22074947 | None:intergenic | 10.0% |
| !!! | ATGTTCTAATAATTTTATTT+TGG | + | chr7.3:22075362-22075381 | MS.gene41817:intron | 10.0% |
| !!! | TAATATTTTTAAAAAAAAGG+GGG | + | chr7.3:22074779-22074798 | MS.gene41817:intron | 10.0% |
| !! | AAAAATTGTTAATCAAACTT+AGG | + | chr7.3:22075019-22075038 | MS.gene41817:intron | 15.0% |
| !! | AACAAATAAAATTTAACATC+GGG | - | chr7.3:22074927-22074946 | None:intergenic | 15.0% |
| !! | GAATAATACAAAATTATTTG+TGG | - | chr7.3:22073823-22073842 | None:intergenic | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | + | chr7.3:22074388-22074407 | MS.gene41817:intron | 15.0% |
| !!! | AAAATTCATTTTAAAATCCA+TGG | + | chr7.3:22073741-22073760 | MS.gene41817:intron | 15.0% |
| !!! | AATTTTATTTGTTAACCTTT+CGG | + | chr7.3:22074934-22074953 | MS.gene41817:intron | 15.0% |
| !!! | AGTTTGAAATTTATCAAAAT+TGG | - | chr7.3:22073932-22073951 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGGTATTACTA+AGG | + | chr7.3:22075373-22075392 | MS.gene41817:intron | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | - | chr7.3:22074834-22074853 | None:intergenic | 15.0% |
| !! | AAAAAAGTGAGAGAATAAAA+AGG | - | chr7.3:22074560-22074579 | None:intergenic | 20.0% |
| !! | AAAATTTGTAACATCAGATT+TGG | - | chr7.3:22074278-22074297 | None:intergenic | 20.0% |
| !! | AAATTTATCAAAATTGGACT+AGG | - | chr7.3:22073926-22073945 | None:intergenic | 20.0% |
| !! | AGGAAATATATATGTTGAAT+AGG | - | chr7.3:22074245-22074264 | None:intergenic | 20.0% |
| !! | ATCAGAATTAACAATTTCAT+TGG | + | chr7.3:22074072-22074091 | MS.gene41817:intron | 20.0% |
| !! | TATAAAACTATTCAACTTTG+CGG | + | chr7.3:22074730-22074749 | MS.gene41817:intron | 20.0% |
| !! | TTTGATATATGTAACTTTCA+TGG | - | chr7.3:22074105-22074124 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | - | chr7.3:22073264-22073283 | None:intergenic | 20.0% |
| !!! | GAATAGTTTTATACAAATGA+TGG | - | chr7.3:22074723-22074742 | None:intergenic | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | - | chr7.3:22074831-22074850 | None:intergenic | 20.0% |
| !!! | TTTGTGATTTTAGTATGAAT+TGG | - | chr7.3:22073773-22073792 | None:intergenic | 20.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | - | chr7.3:22073263-22073282 | None:intergenic | 20.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | + | chr7.3:22073285-22073304 | MS.gene41817:CDS | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | - | chr7.3:22073520-22073539 | None:intergenic | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | + | chr7.3:22074402-22074421 | MS.gene41817:intron | 25.0% |
| !! | AATATAGCACAGTGTATTTT+GGG | - | chr7.3:22074901-22074920 | None:intergenic | 25.0% |
| !! | ATTAGAGAAAGCATATACAA+AGG | + | chr7.3:22074043-22074062 | MS.gene41817:intron | 25.0% |
| !! | TAATATAGCACAGTGTATTT+TGG | - | chr7.3:22074902-22074921 | None:intergenic | 25.0% |
| !! | TACAAATGATGGAAAAAACT+AGG | - | chr7.3:22074712-22074731 | None:intergenic | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | + | chr7.3:22073519-22073538 | MS.gene41817:CDS | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | + | chr7.3:22073600-22073619 | MS.gene41817:CDS | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | - | chr7.3:22074378-22074397 | None:intergenic | 25.0% |
| !!! | TAGCATTTTTTTCAGTGATT+GGG | + | chr7.3:22075231-22075250 | MS.gene41817:intron | 25.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | - | chr7.3:22073262-22073281 | None:intergenic | 25.0% |
| !!! | TTTTTTATGAGATTTGAGCA+TGG | + | chr7.3:22074208-22074227 | MS.gene41817:intron | 25.0% |
| AAGTGAGAGAATAAAAAGGA+AGG | - | chr7.3:22074556-22074575 | None:intergenic | 30.0% | |
| ACCAAACAATTGAACTAAAG+TGG | - | chr7.3:22075082-22075101 | None:intergenic | 30.0% | |
| AGAATCATTTAAACAAGAGG+AGG | - | chr7.3:22073517-22073536 | None:intergenic | 30.0% | |
| CCAATACTCATTAATAACAC+TGG | - | chr7.3:22074314-22074333 | None:intergenic | 30.0% | |
| CTGAAAAAAATGCTAGAAGA+CGG | - | chr7.3:22075226-22075245 | None:intergenic | 30.0% | |
| TAGTTGAAATTAGGAGAAAG+AGG | - | chr7.3:22073675-22073694 | None:intergenic | 30.0% | |
| TGGAAAAAACTAGGAATGTA+TGG | - | chr7.3:22074703-22074722 | None:intergenic | 30.0% | |
| TGGTATTACTAAGGATATGA+AGG | + | chr7.3:22075382-22075401 | MS.gene41817:intron | 30.0% | |
| TTAACCGCAATGTTTATTAC+CGG | + | chr7.3:22075101-22075120 | MS.gene41817:intron | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | + | chr7.3:22075337-22075356 | MS.gene41817:intron | 30.0% | |
| ! | AATGTTTATTACCGGTTGAA+AGG | + | chr7.3:22075109-22075128 | MS.gene41817:intron | 30.0% |
| ! | ACCACTTTAGTTCAATTGTT+TGG | + | chr7.3:22075078-22075097 | MS.gene41817:intron | 30.0% |
| ! | CCAGTGTTATTAATGAGTAT+TGG | + | chr7.3:22074311-22074330 | MS.gene41817:intron | 30.0% |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | + | chr7.3:22073599-22073618 | MS.gene41817:CDS | 30.0% |
| ! | TAGGCTTTGATGTAATATGT+TGG | - | chr7.3:22073907-22073926 | None:intergenic | 30.0% |
| ! | TCAAGTATGAGAATTTGTTC+TGG | - | chr7.3:22073210-22073229 | None:intergenic | 30.0% |
| ! | TCAGATTTGGAATTTATGCA+AGG | - | chr7.3:22074265-22074284 | None:intergenic | 30.0% |
| ! | TTGACTTCTTAATGATAACG+TGG | + | chr7.3:22075158-22075177 | MS.gene41817:intron | 30.0% |
| ! | TTTTAAACTAAGTGCATGGA+TGG | - | chr7.3:22074374-22074393 | None:intergenic | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | - | chr7.3:22073261-22073280 | None:intergenic | 30.0% |
| !!! | ATGAGAATTTGTTCTGGTTT+TGG | - | chr7.3:22073204-22073223 | None:intergenic | 30.0% |
| !!! | CTAGCATTTTTTTCAGTGAT+TGG | + | chr7.3:22075230-22075249 | MS.gene41817:intron | 30.0% |
| AAGATGCCATGTTCATTTGT+GGG | - | chr7.3:22075541-22075560 | None:intergenic | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | + | chr7.3:22073458-22073477 | MS.gene41817:CDS | 35.0% | |
| ATTGCAACAGAAATTCAAGC+GGG | + | chr7.3:22075448-22075467 | MS.gene41817:CDS | 35.0% | |
| ATTTACAGACTCCTTTCAAC+CGG | - | chr7.3:22075123-22075142 | None:intergenic | 35.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | - | chr7.3:22073394-22073413 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | - | chr7.3:22073684-22073703 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | + | chr7.3:22073681-22073700 | MS.gene41817:CDS | 35.0% | |
| CTAGACATCAAAACAGTGTT+TGG | + | chr7.3:22075475-22075494 | MS.gene41817:CDS | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | + | chr7.3:22074414-22074433 | MS.gene41817:intron | 35.0% | |
| GATTGCAACAGAAATTCAAG+CGG | + | chr7.3:22075447-22075466 | MS.gene41817:CDS | 35.0% | |
| GGAATGATTGATTAGGTTAC+AGG | + | chr7.3:22074409-22074428 | MS.gene41817:intron | 35.0% | |
| GTGATTGGGATATGAAATTC+AGG | + | chr7.3:22075245-22075264 | MS.gene41817:intron | 35.0% | |
| TAGAACATCACCATACACAT+TGG | - | chr7.3:22075350-22075369 | None:intergenic | 35.0% | |
| TATTTCTCATGAGAACCGAA+AGG | - | chr7.3:22074952-22074971 | None:intergenic | 35.0% | |
| TCAACCGGTAATAAACATTG+CGG | - | chr7.3:22075108-22075127 | None:intergenic | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | + | chr7.3:22073688-22073707 | MS.gene41817:intron | 35.0% | |
| TCCATTCGCTGTGTAAAATT+TGG | - | chr7.3:22074153-22074172 | None:intergenic | 35.0% | |
| TGAAATTAGGAGAAAGAGGA+GGG | - | chr7.3:22073671-22073690 | None:intergenic | 35.0% | |
| TGATAATTCGAAGTTCGATC+AGG | + | chr7.3:22074977-22074996 | MS.gene41817:intron | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | + | chr7.3:22073398-22073417 | MS.gene41817:CDS | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | + | chr7.3:22074413-22074432 | MS.gene41817:intron | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | + | chr7.3:22074492-22074511 | MS.gene41817:intron | 35.0% | |
| TGCCAATCCTGTTATATTAC+TGG | - | chr7.3:22075410-22075429 | None:intergenic | 35.0% | |
| TGCCAGTAATATAACAGGAT+TGG | + | chr7.3:22075405-22075424 | MS.gene41817:CDS | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | + | chr7.3:22075425-22075444 | MS.gene41817:CDS | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | - | chr7.3:22074480-22074499 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | - | chr7.3:22073672-22073691 | None:intergenic | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | + | chr7.3:22075424-22075443 | MS.gene41817:CDS | 35.0% | |
| ! | AAAACATGAACGCTACTTTC+CGG | + | chr7.3:22074516-22074535 | MS.gene41817:intron | 35.0% |
| ! | AAGTAGCGTTCATGTTTTTC+CGG | - | chr7.3:22074514-22074533 | None:intergenic | 35.0% |
| ! | TTGGTTTGAACCATATCACA+AGG | - | chr7.3:22073471-22073490 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | + | chr7.3:22073609-22073628 | MS.gene41817:CDS | 35.0% |
| !!! | AACACTGTTTTGATGTCTAG+TGG | - | chr7.3:22075475-22075494 | None:intergenic | 35.0% |
| AACCACCAAAAACCATGGTT+GGG | - | chr7.3:22073494-22073513 | None:intergenic | 40.0% | |
| AGGATGGGTACAGAATAAAG+TGG | + | chr7.3:22074429-22074448 | MS.gene41817:intron | 40.0% | |
| CAAGATGCCATGTTCATTTG+TGG | - | chr7.3:22075542-22075561 | None:intergenic | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | + | chr7.3:22074430-22074449 | MS.gene41817:intron | 40.0% | |
| GTGATGTTAGTTCATTCCTC+TGG | + | chr7.3:22075505-22075524 | MS.gene41817:CDS | 40.0% | |
| TTCACTGAATAAGTCGTGCT+TGG | + | chr7.3:22075043-22075062 | MS.gene41817:intron | 40.0% | |
| TTGCAACAGAAATTCAAGCG+GGG | + | chr7.3:22075449-22075468 | MS.gene41817:CDS | 40.0% | |
| ! | AGTTTTCTCGGAACCATGTT+GGG | - | chr7.3:22073157-22073176 | None:intergenic | 40.0% |
| ! | GCCAAATTTTACACAGCGAA+TGG | + | chr7.3:22074149-22074168 | MS.gene41817:intron | 40.0% |
| !! | GAAGGTGCCAGTAATATAAC+AGG | + | chr7.3:22075400-22075419 | MS.gene41817:CDS | 40.0% |
| !!! | GGATCTGTTGATTTTGCAAG+AGG | - | chr7.3:22074810-22074829 | None:intergenic | 40.0% |
| AAACTGAACCGGTTAGGTCA+AGG | + | chr7.3:22073172-22073191 | MS.gene41817:CDS | 45.0% | |
| AACAACACTCCAACCCAACA+TGG | + | chr7.3:22073141-22073160 | MS.gene41817:CDS | 45.0% | |
| AACACCACCACATGATGAAG+AGG | - | chr7.3:22073550-22073569 | None:intergenic | 45.0% | |
| AACGCGGAACTGTCAAATCA+AGG | - | chr7.3:22074464-22074483 | None:intergenic | 45.0% | |
| ACCAAAAACCATGGTTGGGT+TGG | - | chr7.3:22073490-22073509 | None:intergenic | 45.0% | |
| CCAGTTCCCACAAATGAACA+TGG | + | chr7.3:22075532-22075551 | MS.gene41817:CDS | 45.0% | |
| CCATGTTCATTTGTGGGAAC+TGG | - | chr7.3:22075535-22075554 | None:intergenic | 45.0% | |
| CCTCAGCAAGTTGTTAACGA+TGG | + | chr7.3:22073432-22073451 | MS.gene41817:CDS | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | + | chr7.3:22073294-22073313 | MS.gene41817:CDS | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | + | chr7.3:22073225-22073244 | MS.gene41817:CDS | 45.0% | |
| GAACCACCAAAAACCATGGT+TGG | - | chr7.3:22073495-22073514 | None:intergenic | 45.0% | |
| GGTGTTCTTAGTGGTCAACA+AGG | + | chr7.3:22073564-22073583 | MS.gene41817:CDS | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | + | chr7.3:22073540-22073559 | MS.gene41817:CDS | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | + | chr7.3:22073316-22073335 | MS.gene41817:CDS | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | + | chr7.3:22073569-22073588 | MS.gene41817:CDS | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | + | chr7.3:22073543-22073562 | MS.gene41817:CDS | 45.0% | |
| TGGTTCCGAGAAAACTGAAC+CGG | + | chr7.3:22073161-22073180 | MS.gene41817:CDS | 45.0% | |
| TTGATTCAGAGCTTGCACCA+TGG | + | chr7.3:22075559-22075578 | MS.gene41817:CDS | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | + | chr7.3:22073486-22073505 | MS.gene41817:CDS | 45.0% |
| ! | CAGTTTTCTCGGAACCATGT+TGG | - | chr7.3:22073158-22073177 | None:intergenic | 45.0% |
| ! | GTATGAATTGGAGTGCTCCA+TGG | - | chr7.3:22073761-22073780 | None:intergenic | 45.0% |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | + | chr7.3:22073555-22073574 | MS.gene41817:CDS | 45.0% |
| !! | AACCCAACCATGGTTTTTGG+TGG | + | chr7.3:22073489-22073508 | MS.gene41817:CDS | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | - | chr7.3:22073142-22073161 | None:intergenic | 45.0% |
| !! | CCATCGTTAACAACTTGCTG+AGG | - | chr7.3:22073435-22073454 | None:intergenic | 45.0% |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | - | chr7.3:22073169-22073188 | None:intergenic | 45.0% |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | - | chr7.3:22073141-22073160 | None:intergenic | 45.0% |
| !!! | ATAATATTTTTAAAAAAAAG+GGG | + | chr7.3:22074778-22074797 | MS.gene41817:intron | 5.0% |
| AGTGGTCAACAAGGCATGGA+TGG | + | chr7.3:22073573-22073592 | MS.gene41817:CDS | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | - | chr7.3:22073235-22073254 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | + | chr7.3:22073166-22073185 | MS.gene41817:CDS | 50.0% | |
| GAAGGAACAGAAACTGCAGC+CGG | - | chr7.3:22074538-22074557 | None:intergenic | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | - | chr7.3:22073499-22073518 | None:intergenic | 50.0% | |
| GGTTCAAACCAACCCAACCA+TGG | + | chr7.3:22073479-22073498 | MS.gene41817:CDS | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | + | chr7.3:22073230-22073249 | MS.gene41817:CDS | 50.0% | |
| TTCTCGGAACCATGTTGGGT+TGG | - | chr7.3:22073153-22073172 | None:intergenic | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | - | chr7.3:22073657-22073676 | None:intergenic | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | - | chr7.3:22073140-22073159 | None:intergenic | 50.0% |
| !! | TCTACTGGTTCCAAAACCGC+CGG | + | chr7.3:22073331-22073350 | MS.gene41817:CDS | 50.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | - | chr7.3:22073139-22073158 | None:intergenic | 50.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | + | chr7.3:22073175-22073194 | MS.gene41817:CDS | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | - | chr7.3:22073183-22073202 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | - | chr7.3:22073344-22073363 | None:intergenic | 55.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | - | chr7.3:22073138-22073157 | None:intergenic | 55.0% |
| CAAGTGTGGCCTGCTGCATC+TGG | - | chr7.3:22073380-22073399 | None:intergenic | 60.0% | |
| CCTGCTGCATCTGGCGTTGT+CGG | - | chr7.3:22073371-22073390 | None:intergenic | 60.0% | |
| TGTGGGAACTGGCACACCAG+AGG | - | chr7.3:22075524-22075543 | None:intergenic | 60.0% | |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | - | chr7.3:22073137-22073156 | None:intergenic | 60.0% |
| CCGACAACGCCAGATGCAGC+AGG | + | chr7.3:22073368-22073387 | MS.gene41817:CDS | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | - | chr7.3:22073368-22073387 | None:intergenic | 65.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | - | chr7.3:22073353-22073372 | None:intergenic | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | - | chr7.3:22073350-22073369 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22073111 | 22075597 | 22073111 | ID=MS.gene41817 |
| chr7.3 | mRNA | 22073111 | 22075597 | 22073111 | ID=MS.gene41817.t1;Parent=MS.gene41817 |
| chr7.3 | exon | 22073111 | 22073702 | 22073111 | ID=MS.gene41817.t1.exon1;Parent=MS.gene41817.t1 |
| chr7.3 | CDS | 22073111 | 22073702 | 22073111 | ID=cds.MS.gene41817.t1;Parent=MS.gene41817.t1 |
| chr7.3 | exon | 22075395 | 22075597 | 22075395 | ID=MS.gene41817.t1.exon2;Parent=MS.gene41817.t1 |
| chr7.3 | CDS | 22075395 | 22075597 | 22075395 | ID=cds.MS.gene41817.t1;Parent=MS.gene41817.t1 |
| Gene Sequence |
| Protein sequence |
