Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41818.t1 | ABN08479.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 1.10E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41818.t1 | Q6X7J3 | 49.5 | 279 | 107 | 7 | 5 | 265 | 1 | 263 | 4.1e-46 | 186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41818.t1 | B7FL74 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 8.0e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41818.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41818.t1 | MTR_7g086940 | 97.736 | 265 | 6 | 0 | 1 | 265 | 1 | 265 | 0.0 | 540 |
| MS.gene41818.t1 | MTR_6g027390 | 49.296 | 284 | 92 | 7 | 20 | 265 | 24 | 293 | 3.48e-59 | 190 |
| MS.gene41818.t1 | MTR_7g025010 | 59.524 | 84 | 34 | 0 | 18 | 101 | 37 | 120 | 2.82e-29 | 116 |
| MS.gene41818.t1 | MTR_2g015000 | 62.500 | 80 | 29 | 1 | 13 | 91 | 39 | 118 | 7.67e-28 | 111 |
| MS.gene41818.t1 | MTR_2g015000 | 41.538 | 65 | 38 | 0 | 201 | 265 | 341 | 405 | 5.39e-13 | 68.6 |
| MS.gene41818.t1 | MTR_4g088070 | 61.905 | 63 | 24 | 0 | 26 | 88 | 27 | 89 | 2.68e-22 | 95.5 |
| MS.gene41818.t1 | MTR_4g088080 | 54.667 | 75 | 34 | 0 | 26 | 100 | 38 | 112 | 5.99e-22 | 93.2 |
| MS.gene41818.t1 | MTR_4g084550 | 40.244 | 82 | 47 | 1 | 27 | 106 | 63 | 144 | 3.13e-17 | 77.8 |
| MS.gene41818.t1 | MTR_8g107210 | 44.595 | 74 | 40 | 1 | 25 | 97 | 93 | 166 | 1.07e-14 | 73.2 |
| MS.gene41818.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 3.74e-14 | 70.9 |
| MS.gene41818.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 5.42e-14 | 70.5 |
| MS.gene41818.t1 | MTR_4g063735 | 27.737 | 137 | 98 | 1 | 28 | 163 | 25 | 161 | 5.75e-14 | 70.1 |
| MS.gene41818.t1 | MTR_3g115620 | 47.619 | 63 | 33 | 0 | 26 | 88 | 80 | 142 | 1.57e-13 | 68.2 |
| MS.gene41818.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 1.95e-12 | 65.5 |
| MS.gene41818.t1 | MTR_5g021930 | 30.719 | 153 | 93 | 4 | 27 | 172 | 29 | 175 | 2.36e-12 | 66.2 |
| MS.gene41818.t1 | MTR_5g081990 | 33.333 | 87 | 58 | 0 | 5 | 91 | 10 | 96 | 3.22e-12 | 63.9 |
| MS.gene41818.t1 | MTR_7g060630 | 40.299 | 67 | 40 | 0 | 24 | 90 | 4 | 70 | 3.37e-12 | 64.3 |
| MS.gene41818.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 9.93e-12 | 63.5 |
| MS.gene41818.t1 | MTR_7g023810 | 43.077 | 65 | 37 | 0 | 25 | 89 | 65 | 129 | 1.77e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41818.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 9.38e-63 | 198 |
| MS.gene41818.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 5.52e-62 | 197 |
| MS.gene41818.t1 | AT3G03660 | 47.826 | 299 | 97 | 9 | 12 | 265 | 8 | 292 | 2.11e-59 | 191 |
| MS.gene41818.t1 | AT3G03660 | 47.492 | 299 | 98 | 9 | 12 | 265 | 8 | 292 | 1.14e-58 | 189 |
| MS.gene41818.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene41818.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene41818.t1 | AT5G17810 | 46.792 | 265 | 109 | 8 | 19 | 265 | 12 | 262 | 4.56e-55 | 178 |
| MS.gene41818.t1 | AT5G45980 | 31.271 | 291 | 158 | 9 | 12 | 265 | 39 | 324 | 2.55e-34 | 126 |
| MS.gene41818.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 2.91e-26 | 105 |
| MS.gene41818.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 3.74e-11 | 63.2 |
| MS.gene41818.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 3.39e-26 | 105 |
| MS.gene41818.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 4.67e-11 | 62.8 |
| MS.gene41818.t1 | AT4G35550 | 46.875 | 64 | 34 | 0 | 25 | 88 | 96 | 159 | 2.79e-14 | 71.2 |
| MS.gene41818.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 30 | 99 | 2.59e-13 | 66.2 |
| MS.gene41818.t1 | AT5G59340 | 36.111 | 72 | 46 | 0 | 27 | 98 | 13 | 84 | 5.39e-13 | 67.4 |
| MS.gene41818.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.62e-13 | 66.6 |
| MS.gene41818.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.78e-13 | 66.6 |
| MS.gene41818.t1 | AT1G46480 | 38.202 | 89 | 46 | 2 | 4 | 90 | 71 | 152 | 6.58e-13 | 66.2 |
| MS.gene41818.t1 | AT3G18010 | 40.580 | 69 | 40 | 1 | 25 | 92 | 73 | 141 | 1.10e-12 | 67.4 |
| MS.gene41818.t1 | AT2G28610 | 40.625 | 64 | 38 | 0 | 27 | 90 | 7 | 70 | 3.06e-12 | 65.1 |
| MS.gene41818.t1 | AT1G46480 | 36.735 | 98 | 53 | 2 | 4 | 99 | 71 | 161 | 5.28e-12 | 64.7 |
| MS.gene41818.t1 | AT2G17950 | 42.188 | 64 | 36 | 1 | 27 | 89 | 37 | 100 | 8.79e-12 | 64.3 |
| MS.gene41818.t1 | AT5G05770 | 33.784 | 74 | 49 | 0 | 28 | 101 | 29 | 102 | 1.19e-11 | 60.8 |
| MS.gene41818.t1 | AT3G11260 | 39.062 | 64 | 39 | 0 | 28 | 91 | 24 | 87 | 1.26e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7.3:+22013020 | None:intergenic |
| TGCCAATCCTGTTATATTAC+TGG | 0.287058 | 7.3:+22011294 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7.3:-22013182 | MS.gene41818:CDS |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7.3:+22013563 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7.3:-22013416 | MS.gene41818:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7.3:+22013564 | None:intergenic |
| ATGAGAATTTGTTCTGGTTT+TGG | 0.333304 | 7.3:+22013500 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7.3:+22013360 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7.3:+22013324 | None:intergenic |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7.3:+22013562 | None:intergenic |
| CCATGGTGAAAGCTACTTTC+TGG | 0.370838 | 7.3:-22011125 | None:intergenic |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7.3:+22013567 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7.3:+22013565 | None:intergenic |
| CTAGACATCAAAACAGTGTT+TGG | 0.400410 | 7.3:-22011226 | MS.gene41818:CDS |
| CCATGTTCATTTGTGGGAAC+TGG | 0.410202 | 7.3:+22011169 | None:intergenic |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7.3:-22013146 | MS.gene41818:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7.3:+22013333 | None:intergenic |
| TCAAGTATGAGAATTTGTTC+TGG | 0.415342 | 7.3:+22013494 | None:intergenic |
| GAAGGTGCCAGTAATATAAC+AGG | 0.422710 | 7.3:-22011301 | MS.gene41818:CDS |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7.3:-22013333 | MS.gene41818:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7.3:+22013521 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7.3:+22013566 | None:intergenic |
| CAAGATGCCATGTTCATTTG+TGG | 0.439026 | 7.3:+22011162 | None:intergenic |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7.3:-22011276 | MS.gene41818:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7.3:-22013243 | MS.gene41818:CDS |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7.3:-22011277 | MS.gene41818:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7.3:-22013535 | MS.gene41818:CDS |
| TGGTATTACTAAGGATATGA+AGG | 0.475491 | 7.3:-22011319 | MS.gene41818:intron |
| AAGATGCCATGTTCATTTGT+GGG | 0.479061 | 7.3:+22011163 | None:intergenic |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7.3:+22013029 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7.3:+22013469 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7.3:-22013161 | MS.gene41818:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7.3:-22011196 | MS.gene41818:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7.3:-22013020 | MS.gene41818:intron |
| TGCCAGTAATATAACAGGAT+TGG | 0.512001 | 7.3:-22011296 | MS.gene41818:CDS |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7.3:+22013551 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7.3:-22013540 | MS.gene41818:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7.3:-22013385 | MS.gene41818:CDS |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7.3:-22013128 | MS.gene41818:CDS |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7.3:+22013033 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7.3:-22013407 | MS.gene41818:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7.3:+22013310 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7.3:+22013154 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7.3:+22013032 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+GGG | 0.569187 | 7.3:-22011253 | MS.gene41818:CDS |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7.3:+22013336 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7.3:-22013158 | MS.gene41818:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7.3:+22013184 | None:intergenic |
| GTCGGCGGCGAGATCTAGAC+CGG | 0.586191 | 7.3:+22013351 | None:intergenic |
| CCAGTTCCCACAAATGAACA+TGG | 0.590552 | 7.3:-22011169 | MS.gene41818:CDS |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7.3:-22013303 | MS.gene41818:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7.3:-22013132 | MS.gene41818:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7.3:+22013187 | None:intergenic |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7.3:+22013047 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7.3:-22013529 | MS.gene41818:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7.3:-22013560 | MS.gene41818:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7.3:-22013471 | MS.gene41818:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7.3:-22013370 | MS.gene41818:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7.3:-22013476 | MS.gene41818:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7.3:-22013222 | MS.gene41818:CDS |
| CCTCAGCAAGTTGTTAACGA+TGG | 0.634528 | 7.3:-22013269 | MS.gene41818:CDS |
| CCATCGTTAACAACTTGCTG+AGG | 0.647740 | 7.3:+22013269 | None:intergenic |
| TGTGGGAACTGGCACACCAG+AGG | 0.654766 | 7.3:+22011180 | None:intergenic |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7.3:+22013233 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7.3:-22013137 | MS.gene41818:CDS |
| GATTGCAACAGAAATTCAAG+CGG | 0.666279 | 7.3:-22011254 | MS.gene41818:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7.3:-22013526 | MS.gene41818:CDS |
| GGCGGCGAGATCTAGACCGG+CGG | 0.697708 | 7.3:+22013354 | None:intergenic |
| TTGATTCAGAGCTTGCACCA+TGG | 0.703765 | 7.3:-22011142 | MS.gene41818:CDS |
| CCAGAAAGTAGCTTTCACCA+TGG | 0.713476 | 7.3:+22011125 | None:intergenic |
| TTGCAACAGAAATTCAAGCG+GGG | 0.718011 | 7.3:-22011252 | MS.gene41818:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATATTTTTAAAAAAAA+GGG | - | chr7.3:22012792-22012811 | MS.gene41818:intron | 0.0% |
| !!! | TTATAATATTTTTAAAAAAA+AGG | - | chr7.3:22012791-22012810 | MS.gene41818:intron | 0.0% |
| !! | AAAAAAAAAAAACATAATCT+AGG | + | chr7.3:22012648-22012667 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACATAATCTA+GGG | + | chr7.3:22012647-22012666 | None:intergenic | 10.0% |
| !! | TAACAAATAAAATTTAACAT+CGG | + | chr7.3:22012943-22012962 | None:intergenic | 10.0% |
| !!! | ATGTTCTAATAATTTTATTT+TGG | - | chr7.3:22013377-22013396 | MS.gene41818:CDS | 10.0% |
| !!! | TAATATTTTTAAAAAAAAGG+GGG | - | chr7.3:22012794-22012813 | MS.gene41818:intron | 10.0% |
| !! | AAAAATTGTTAATCAAACTT+AGG | - | chr7.3:22013034-22013053 | MS.gene41818:CDS | 15.0% |
| !! | AACAAATAAAATTTAACATC+GGG | + | chr7.3:22012942-22012961 | None:intergenic | 15.0% |
| !! | GAATAATACAAAATTATTTG+TGG | + | chr7.3:22011838-22011857 | None:intergenic | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | - | chr7.3:22012403-22012422 | MS.gene41818:intron | 15.0% |
| !!! | AAAATTCATTTTAAAATCCA+TGG | - | chr7.3:22011756-22011775 | MS.gene41818:intron | 15.0% |
| !!! | AATTTTATTTGTTAACCTTT+CGG | - | chr7.3:22012949-22012968 | MS.gene41818:intron | 15.0% |
| !!! | AGTTTGAAATTTATCAAAAT+TGG | + | chr7.3:22011947-22011966 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGGTATTACTA+AGG | - | chr7.3:22013388-22013407 | MS.gene41818:CDS | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | + | chr7.3:22012849-22012868 | None:intergenic | 15.0% |
| !! | AAAAAAGTGAGAGAATAAAA+AGG | + | chr7.3:22012575-22012594 | None:intergenic | 20.0% |
| !! | AAAATTTGTAACATCAGATT+TGG | + | chr7.3:22012293-22012312 | None:intergenic | 20.0% |
| !! | AAATTTATCAAAATTGGACT+AGG | + | chr7.3:22011941-22011960 | None:intergenic | 20.0% |
| !! | AGGAAATATATATGTTGAAT+AGG | + | chr7.3:22012260-22012279 | None:intergenic | 20.0% |
| !! | ATCAGAATTAACAATTTCAT+TGG | - | chr7.3:22012087-22012106 | MS.gene41818:intron | 20.0% |
| !! | TATAAAACTATTCAACTTTG+CGG | - | chr7.3:22012745-22012764 | MS.gene41818:intron | 20.0% |
| !! | TTTGATATATGTAACTTTCA+TGG | + | chr7.3:22012120-22012139 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | + | chr7.3:22011279-22011298 | None:intergenic | 20.0% |
| !!! | GAATAGTTTTATACAAATGA+TGG | + | chr7.3:22012738-22012757 | None:intergenic | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | + | chr7.3:22012846-22012865 | None:intergenic | 20.0% |
| !!! | TTTGTGATTTTAGTATGAAT+TGG | + | chr7.3:22011788-22011807 | None:intergenic | 20.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | + | chr7.3:22011278-22011297 | None:intergenic | 20.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | - | chr7.3:22011300-22011319 | MS.gene41818:CDS | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | + | chr7.3:22011535-22011554 | None:intergenic | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | - | chr7.3:22012417-22012436 | MS.gene41818:intron | 25.0% |
| !! | AATATAGCACAGTGTATTTT+GGG | + | chr7.3:22012916-22012935 | None:intergenic | 25.0% |
| !! | ATTAGAGAAAGCATATACAA+AGG | - | chr7.3:22012058-22012077 | MS.gene41818:intron | 25.0% |
| !! | TAATATAGCACAGTGTATTT+TGG | + | chr7.3:22012917-22012936 | None:intergenic | 25.0% |
| !! | TACAAATGATGGAAAAAACT+AGG | + | chr7.3:22012727-22012746 | None:intergenic | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | - | chr7.3:22011534-22011553 | MS.gene41818:intron | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | - | chr7.3:22011615-22011634 | MS.gene41818:intron | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | + | chr7.3:22012393-22012412 | None:intergenic | 25.0% |
| !!! | TAGCATTTTTTTCAGTGATT+GGG | - | chr7.3:22013246-22013265 | MS.gene41818:CDS | 25.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | + | chr7.3:22011277-22011296 | None:intergenic | 25.0% |
| !!! | TTTTTTATGAGATTTGAGCA+TGG | - | chr7.3:22012223-22012242 | MS.gene41818:intron | 25.0% |
| AAGTGAGAGAATAAAAAGGA+AGG | + | chr7.3:22012571-22012590 | None:intergenic | 30.0% | |
| ACCAAACAATTGAACTAAAG+TGG | + | chr7.3:22013097-22013116 | None:intergenic | 30.0% | |
| AGAATCATTTAAACAAGAGG+AGG | + | chr7.3:22011532-22011551 | None:intergenic | 30.0% | |
| CCAATACTCATTAATAACAC+TGG | + | chr7.3:22012329-22012348 | None:intergenic | 30.0% | |
| CTGAAAAAAATGCTAGAAGA+CGG | + | chr7.3:22013241-22013260 | None:intergenic | 30.0% | |
| TAGTTGAAATTAGGAGAAAG+AGG | + | chr7.3:22011690-22011709 | None:intergenic | 30.0% | |
| TGATAATTCGAAGTTCGATT+AGG | - | chr7.3:22012992-22013011 | MS.gene41818:intron | 30.0% | |
| TGGAAAAAACTAGGAATGTA+TGG | + | chr7.3:22012718-22012737 | None:intergenic | 30.0% | |
| TGGTATTACTAAGGATATGA+AGG | - | chr7.3:22013397-22013416 | MS.gene41818:CDS | 30.0% | |
| TTAACCGCAATGTTTATTAC+CGG | - | chr7.3:22013116-22013135 | MS.gene41818:CDS | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | - | chr7.3:22013352-22013371 | MS.gene41818:CDS | 30.0% | |
| ! | AATGTTTATTACCGGTTGAA+AGG | - | chr7.3:22013124-22013143 | MS.gene41818:CDS | 30.0% |
| ! | ACCACTTTAGTTCAATTGTT+TGG | - | chr7.3:22013093-22013112 | MS.gene41818:CDS | 30.0% |
| ! | CCAGTGTTATTAATGAGTAT+TGG | - | chr7.3:22012326-22012345 | MS.gene41818:intron | 30.0% |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | - | chr7.3:22011614-22011633 | MS.gene41818:intron | 30.0% |
| ! | TAGGCTTTGATGTAATATGT+TGG | + | chr7.3:22011922-22011941 | None:intergenic | 30.0% |
| ! | TCAAGTATGAGAATTTGTTC+TGG | + | chr7.3:22011225-22011244 | None:intergenic | 30.0% |
| ! | TCAGATTTGGAATTTATGCA+AGG | + | chr7.3:22012280-22012299 | None:intergenic | 30.0% |
| ! | TTGACTTCTTAATGATAACG+TGG | - | chr7.3:22013173-22013192 | MS.gene41818:CDS | 30.0% |
| ! | TTTTAAACTAAGTGCATGGA+TGG | + | chr7.3:22012389-22012408 | None:intergenic | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | + | chr7.3:22011276-22011295 | None:intergenic | 30.0% |
| !!! | ATGAGAATTTGTTCTGGTTT+TGG | + | chr7.3:22011219-22011238 | None:intergenic | 30.0% |
| !!! | CTAGCATTTTTTTCAGTGAT+TGG | - | chr7.3:22013245-22013264 | MS.gene41818:CDS | 30.0% |
| AAGATGCCATGTTCATTTGT+GGG | + | chr7.3:22013556-22013575 | None:intergenic | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | - | chr7.3:22011473-22011492 | MS.gene41818:intron | 35.0% | |
| ATTGCAACAGAAATTCAAGC+GGG | - | chr7.3:22013463-22013482 | MS.gene41818:CDS | 35.0% | |
| ATTTACAGACTCCTTTCAAC+CGG | + | chr7.3:22013138-22013157 | None:intergenic | 35.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | + | chr7.3:22011409-22011428 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | + | chr7.3:22011699-22011718 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | - | chr7.3:22011696-22011715 | MS.gene41818:intron | 35.0% | |
| CTAGACATCAAAACAGTGTT+TGG | - | chr7.3:22013490-22013509 | MS.gene41818:CDS | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | - | chr7.3:22012429-22012448 | MS.gene41818:intron | 35.0% | |
| GATTGCAACAGAAATTCAAG+CGG | - | chr7.3:22013462-22013481 | MS.gene41818:CDS | 35.0% | |
| GGAATGATTGATTAGGTTAC+AGG | - | chr7.3:22012424-22012443 | MS.gene41818:intron | 35.0% | |
| GTGATTGGGATATGAAATTC+AGG | - | chr7.3:22013260-22013279 | MS.gene41818:CDS | 35.0% | |
| TAGAACATCACCATACACAT+TGG | + | chr7.3:22013365-22013384 | None:intergenic | 35.0% | |
| TATTTCTCATGAGAACCGAA+AGG | + | chr7.3:22012967-22012986 | None:intergenic | 35.0% | |
| TCAACCGGTAATAAACATTG+CGG | + | chr7.3:22013123-22013142 | None:intergenic | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | - | chr7.3:22011703-22011722 | MS.gene41818:intron | 35.0% | |
| TCCATTCGCTGTGTAAAATT+TGG | + | chr7.3:22012168-22012187 | None:intergenic | 35.0% | |
| TGAAATTAGGAGAAAGAGGA+GGG | + | chr7.3:22011686-22011705 | None:intergenic | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | - | chr7.3:22011413-22011432 | MS.gene41818:intron | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | - | chr7.3:22012428-22012447 | MS.gene41818:intron | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | - | chr7.3:22012507-22012526 | MS.gene41818:intron | 35.0% | |
| TGCCAATCCTGTTATATTAC+TGG | + | chr7.3:22013425-22013444 | None:intergenic | 35.0% | |
| TGCCAGTAATATAACAGGAT+TGG | - | chr7.3:22013420-22013439 | MS.gene41818:CDS | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | - | chr7.3:22013440-22013459 | MS.gene41818:CDS | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | + | chr7.3:22012495-22012514 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | + | chr7.3:22011687-22011706 | None:intergenic | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | - | chr7.3:22013439-22013458 | MS.gene41818:CDS | 35.0% | |
| ! | AAAACATGAACGCTACTTTC+CGG | - | chr7.3:22012531-22012550 | MS.gene41818:intron | 35.0% |
| ! | AAGTAGCGTTCATGTTTTTC+CGG | + | chr7.3:22012529-22012548 | None:intergenic | 35.0% |
| ! | TTGGTTTGAACCATATCACA+AGG | + | chr7.3:22011486-22011505 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | - | chr7.3:22011624-22011643 | MS.gene41818:intron | 35.0% |
| !!! | AACACTGTTTTGATGTCTAG+TGG | + | chr7.3:22013490-22013509 | None:intergenic | 35.0% |
| AACCACCAAAAACCATGGTT+GGG | + | chr7.3:22011509-22011528 | None:intergenic | 40.0% | |
| AGGATGGGTACAGAATAAAG+TGG | - | chr7.3:22012444-22012463 | MS.gene41818:intron | 40.0% | |
| CAAGATGCCATGTTCATTTG+TGG | + | chr7.3:22013557-22013576 | None:intergenic | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | - | chr7.3:22012445-22012464 | MS.gene41818:intron | 40.0% | |
| GTGATGTTAGTTCATTCCTC+TGG | - | chr7.3:22013520-22013539 | MS.gene41818:CDS | 40.0% | |
| TTCACTGAATAAGTCGTGCT+TGG | - | chr7.3:22013058-22013077 | MS.gene41818:CDS | 40.0% | |
| TTGCAACAGAAATTCAAGCG+GGG | - | chr7.3:22013464-22013483 | MS.gene41818:CDS | 40.0% | |
| ! | AGTTTTCTCGGAACCATGTT+GGG | + | chr7.3:22011172-22011191 | None:intergenic | 40.0% |
| ! | GCCAAATTTTACACAGCGAA+TGG | - | chr7.3:22012164-22012183 | MS.gene41818:intron | 40.0% |
| !! | GAAGGTGCCAGTAATATAAC+AGG | - | chr7.3:22013415-22013434 | MS.gene41818:CDS | 40.0% |
| !!! | GGATCTGTTGATTTTGCAAG+AGG | + | chr7.3:22012825-22012844 | None:intergenic | 40.0% |
| AAACTGAACCGGTTAGGTCA+AGG | - | chr7.3:22011187-22011206 | MS.gene41818:CDS | 45.0% | |
| AACAACACTCCAACCCAACA+TGG | - | chr7.3:22011156-22011175 | MS.gene41818:CDS | 45.0% | |
| AACACCACCACATGATGAAG+AGG | + | chr7.3:22011565-22011584 | None:intergenic | 45.0% | |
| AACGCGGAACTGTCAAATCA+AGG | + | chr7.3:22012479-22012498 | None:intergenic | 45.0% | |
| ACCAAAAACCATGGTTGGGT+TGG | + | chr7.3:22011505-22011524 | None:intergenic | 45.0% | |
| CCAGTTCCCACAAATGAACA+TGG | - | chr7.3:22013547-22013566 | MS.gene41818:CDS | 45.0% | |
| CCATGTTCATTTGTGGGAAC+TGG | + | chr7.3:22013550-22013569 | None:intergenic | 45.0% | |
| CCTCAGCAAGTTGTTAACGA+TGG | - | chr7.3:22011447-22011466 | MS.gene41818:intron | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | - | chr7.3:22011309-22011328 | MS.gene41818:CDS | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | - | chr7.3:22011240-22011259 | MS.gene41818:CDS | 45.0% | |
| GAACCACCAAAAACCATGGT+TGG | + | chr7.3:22011510-22011529 | None:intergenic | 45.0% | |
| GGTGTTCTTAGTGGTCAACA+AGG | - | chr7.3:22011579-22011598 | MS.gene41818:intron | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | - | chr7.3:22011555-22011574 | MS.gene41818:intron | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | - | chr7.3:22011331-22011350 | MS.gene41818:intron | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | - | chr7.3:22011584-22011603 | MS.gene41818:intron | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | - | chr7.3:22011558-22011577 | MS.gene41818:intron | 45.0% | |
| TGGTTCCGAGAAAACTGAAC+CGG | - | chr7.3:22011176-22011195 | MS.gene41818:CDS | 45.0% | |
| TTGATTCAGAGCTTGCACCA+TGG | - | chr7.3:22013574-22013593 | MS.gene41818:CDS | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | - | chr7.3:22011501-22011520 | MS.gene41818:intron | 45.0% |
| ! | CAGTTTTCTCGGAACCATGT+TGG | + | chr7.3:22011173-22011192 | None:intergenic | 45.0% |
| ! | GTATGAATTGGAGTGCTCCA+TGG | + | chr7.3:22011776-22011795 | None:intergenic | 45.0% |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | - | chr7.3:22011570-22011589 | MS.gene41818:intron | 45.0% |
| !! | AACCCAACCATGGTTTTTGG+TGG | - | chr7.3:22011504-22011523 | MS.gene41818:intron | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | + | chr7.3:22011157-22011176 | None:intergenic | 45.0% |
| !! | CCATCGTTAACAACTTGCTG+AGG | + | chr7.3:22011450-22011469 | None:intergenic | 45.0% |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | + | chr7.3:22011184-22011203 | None:intergenic | 45.0% |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | + | chr7.3:22011156-22011175 | None:intergenic | 45.0% |
| !!! | ATAATATTTTTAAAAAAAAG+GGG | - | chr7.3:22012793-22012812 | MS.gene41818:intron | 5.0% |
| AGTGGTCAACAAGGCATGGA+TGG | - | chr7.3:22011588-22011607 | MS.gene41818:intron | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | + | chr7.3:22011250-22011269 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | - | chr7.3:22011181-22011200 | MS.gene41818:CDS | 50.0% | |
| GAAGGAACAGAAACTGCAGC+CGG | + | chr7.3:22012553-22012572 | None:intergenic | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | + | chr7.3:22011514-22011533 | None:intergenic | 50.0% | |
| GGTTCAAACCAACCCAACCA+TGG | - | chr7.3:22011494-22011513 | MS.gene41818:intron | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | - | chr7.3:22011245-22011264 | MS.gene41818:CDS | 50.0% | |
| TTCTCGGAACCATGTTGGGT+TGG | + | chr7.3:22011168-22011187 | None:intergenic | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | + | chr7.3:22011672-22011691 | None:intergenic | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | + | chr7.3:22011155-22011174 | None:intergenic | 50.0% |
| !! | TCTACTGGTTCCAAAACCGC+CGG | - | chr7.3:22011346-22011365 | MS.gene41818:intron | 50.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | + | chr7.3:22011154-22011173 | None:intergenic | 50.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | - | chr7.3:22011190-22011209 | MS.gene41818:CDS | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | + | chr7.3:22011198-22011217 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | + | chr7.3:22011359-22011378 | None:intergenic | 55.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | + | chr7.3:22011153-22011172 | None:intergenic | 55.0% |
| CAAGTGTGGCCTGCTGCATC+TGG | + | chr7.3:22011395-22011414 | None:intergenic | 60.0% | |
| CCTGCTGCATCTGGCGTTGT+CGG | + | chr7.3:22011386-22011405 | None:intergenic | 60.0% | |
| TGTGGGAACTGGCACACCAG+AGG | + | chr7.3:22013539-22013558 | None:intergenic | 60.0% | |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | + | chr7.3:22011152-22011171 | None:intergenic | 60.0% |
| CCGACAACGCCAGATGCAGC+AGG | - | chr7.3:22011383-22011402 | MS.gene41818:intron | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | + | chr7.3:22011383-22011402 | None:intergenic | 65.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | + | chr7.3:22011368-22011387 | None:intergenic | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | + | chr7.3:22011365-22011384 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22011126 | 22013612 | 22011126 | ID=MS.gene41818 |
| chr7.3 | mRNA | 22011126 | 22013612 | 22011126 | ID=MS.gene41818.t1;Parent=MS.gene41818 |
| chr7.3 | exon | 22013021 | 22013612 | 22013021 | ID=MS.gene41818.t1.exon1;Parent=MS.gene41818.t1 |
| chr7.3 | CDS | 22013021 | 22013612 | 22013021 | ID=cds.MS.gene41818.t1;Parent=MS.gene41818.t1 |
| chr7.3 | exon | 22011126 | 22011328 | 22011126 | ID=MS.gene41818.t1.exon2;Parent=MS.gene41818.t1 |
| chr7.3 | CDS | 22011126 | 22011328 | 22011126 | ID=cds.MS.gene41818.t1;Parent=MS.gene41818.t1 |
| Gene Sequence |
| Protein sequence |
