Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41819.t1 | ABN08479.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 1.10E-127 | 466.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41819.t1 | Q6X7J3 | 49.5 | 279 | 107 | 7 | 5 | 265 | 1 | 263 | 4.1e-46 | 186.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41819.t1 | B7FL74 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 8.0e-128 | 466.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene41819.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41819.t1 | MTR_7g086940 | 97.736 | 265 | 6 | 0 | 1 | 265 | 1 | 265 | 0.0 | 540 |
| MS.gene41819.t1 | MTR_6g027390 | 49.296 | 284 | 92 | 7 | 20 | 265 | 24 | 293 | 3.48e-59 | 190 |
| MS.gene41819.t1 | MTR_7g025010 | 59.524 | 84 | 34 | 0 | 18 | 101 | 37 | 120 | 2.82e-29 | 116 |
| MS.gene41819.t1 | MTR_2g015000 | 62.500 | 80 | 29 | 1 | 13 | 91 | 39 | 118 | 7.67e-28 | 111 |
| MS.gene41819.t1 | MTR_2g015000 | 41.538 | 65 | 38 | 0 | 201 | 265 | 341 | 405 | 5.39e-13 | 68.6 |
| MS.gene41819.t1 | MTR_4g088070 | 61.905 | 63 | 24 | 0 | 26 | 88 | 27 | 89 | 2.68e-22 | 95.5 |
| MS.gene41819.t1 | MTR_4g088080 | 54.667 | 75 | 34 | 0 | 26 | 100 | 38 | 112 | 5.99e-22 | 93.2 |
| MS.gene41819.t1 | MTR_4g084550 | 40.244 | 82 | 47 | 1 | 27 | 106 | 63 | 144 | 3.13e-17 | 77.8 |
| MS.gene41819.t1 | MTR_8g107210 | 44.595 | 74 | 40 | 1 | 25 | 97 | 93 | 166 | 1.07e-14 | 73.2 |
| MS.gene41819.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 3.74e-14 | 70.9 |
| MS.gene41819.t1 | MTR_1g115315 | 48.387 | 62 | 32 | 0 | 26 | 87 | 83 | 144 | 5.42e-14 | 70.5 |
| MS.gene41819.t1 | MTR_4g063735 | 27.737 | 137 | 98 | 1 | 28 | 163 | 25 | 161 | 5.75e-14 | 70.1 |
| MS.gene41819.t1 | MTR_3g115620 | 47.619 | 63 | 33 | 0 | 26 | 88 | 80 | 142 | 1.57e-13 | 68.2 |
| MS.gene41819.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 1.95e-12 | 65.5 |
| MS.gene41819.t1 | MTR_5g021930 | 30.719 | 153 | 93 | 4 | 27 | 172 | 29 | 175 | 2.36e-12 | 66.2 |
| MS.gene41819.t1 | MTR_5g081990 | 33.333 | 87 | 58 | 0 | 5 | 91 | 10 | 96 | 3.22e-12 | 63.9 |
| MS.gene41819.t1 | MTR_7g060630 | 40.299 | 67 | 40 | 0 | 24 | 90 | 4 | 70 | 3.37e-12 | 64.3 |
| MS.gene41819.t1 | MTR_1g019130 | 38.636 | 88 | 51 | 1 | 3 | 90 | 68 | 152 | 9.93e-12 | 63.5 |
| MS.gene41819.t1 | MTR_7g023810 | 43.077 | 65 | 37 | 0 | 25 | 89 | 65 | 129 | 1.77e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene41819.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 9.38e-63 | 198 |
| MS.gene41819.t1 | AT3G03660 | 50.735 | 272 | 100 | 8 | 12 | 265 | 8 | 263 | 5.52e-62 | 197 |
| MS.gene41819.t1 | AT3G03660 | 47.826 | 299 | 97 | 9 | 12 | 265 | 8 | 292 | 2.11e-59 | 191 |
| MS.gene41819.t1 | AT3G03660 | 47.492 | 299 | 98 | 9 | 12 | 265 | 8 | 292 | 1.14e-58 | 189 |
| MS.gene41819.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene41819.t1 | AT5G17810 | 46.792 | 265 | 110 | 8 | 19 | 265 | 12 | 263 | 4.45e-55 | 179 |
| MS.gene41819.t1 | AT5G17810 | 46.792 | 265 | 109 | 8 | 19 | 265 | 12 | 262 | 4.56e-55 | 178 |
| MS.gene41819.t1 | AT5G45980 | 31.271 | 291 | 158 | 9 | 12 | 265 | 39 | 324 | 2.55e-34 | 126 |
| MS.gene41819.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 2.91e-26 | 105 |
| MS.gene41819.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 3.74e-11 | 63.2 |
| MS.gene41819.t1 | AT2G33880 | 61.644 | 73 | 28 | 0 | 20 | 92 | 47 | 119 | 3.39e-26 | 105 |
| MS.gene41819.t1 | AT2G33880 | 43.636 | 55 | 31 | 0 | 211 | 265 | 323 | 377 | 4.67e-11 | 62.8 |
| MS.gene41819.t1 | AT4G35550 | 46.875 | 64 | 34 | 0 | 25 | 88 | 96 | 159 | 2.79e-14 | 71.2 |
| MS.gene41819.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 30 | 99 | 2.59e-13 | 66.2 |
| MS.gene41819.t1 | AT5G59340 | 36.111 | 72 | 46 | 0 | 27 | 98 | 13 | 84 | 5.39e-13 | 67.4 |
| MS.gene41819.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.62e-13 | 66.6 |
| MS.gene41819.t1 | AT1G20700 | 42.857 | 70 | 40 | 0 | 25 | 94 | 92 | 161 | 5.78e-13 | 66.6 |
| MS.gene41819.t1 | AT1G46480 | 38.202 | 89 | 46 | 2 | 4 | 90 | 71 | 152 | 6.58e-13 | 66.2 |
| MS.gene41819.t1 | AT3G18010 | 40.580 | 69 | 40 | 1 | 25 | 92 | 73 | 141 | 1.10e-12 | 67.4 |
| MS.gene41819.t1 | AT2G28610 | 40.625 | 64 | 38 | 0 | 27 | 90 | 7 | 70 | 3.06e-12 | 65.1 |
| MS.gene41819.t1 | AT1G46480 | 36.735 | 98 | 53 | 2 | 4 | 99 | 71 | 161 | 5.28e-12 | 64.7 |
| MS.gene41819.t1 | AT2G17950 | 42.188 | 64 | 36 | 1 | 27 | 89 | 37 | 100 | 8.79e-12 | 64.3 |
| MS.gene41819.t1 | AT5G05770 | 33.784 | 74 | 49 | 0 | 28 | 101 | 29 | 102 | 1.19e-11 | 60.8 |
| MS.gene41819.t1 | AT3G11260 | 39.062 | 64 | 39 | 0 | 28 | 91 | 24 | 87 | 1.26e-11 | 62.4 |
Find 71 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGAGTGATAGTTGAAATT+AGG | 0.234117 | 7.3:-22044153 | None:intergenic |
| TGCCAATCCTGTTATATTAC+TGG | 0.287058 | 7.3:-22045880 | None:intergenic |
| TCTTGTTTAAATGATTCTTC+TGG | 0.294809 | 7.3:+22043991 | MS.gene41819:CDS |
| TGTTGGGTTGGAGTGTTGTT+GGG | 0.318471 | 7.3:-22043610 | None:intergenic |
| AGAAAACTTCTTGAGAAATT+CGG | 0.326558 | 7.3:+22043757 | MS.gene41819:CDS |
| GTTGGGTTGGAGTGTTGTTG+GGG | 0.328214 | 7.3:-22043609 | None:intergenic |
| ATGAGAATTTGTTCTGGTTT+TGG | 0.333304 | 7.3:-22043673 | None:intergenic |
| GAGATCTAGACCGGCGGTTT+TGG | 0.333606 | 7.3:-22043813 | None:intergenic |
| CAAGTGTGGCCTGCTGCATC+TGG | 0.348372 | 7.3:-22043849 | None:intergenic |
| ATGTTGGGTTGGAGTGTTGT+TGG | 0.365481 | 7.3:-22043611 | None:intergenic |
| CCATGGTGAAAGCTACTTTC+TGG | 0.370838 | 7.3:+22046049 | MS.gene41819:CDS |
| GGGTTGGAGTGTTGTTGGGG+GGG | 0.381125 | 7.3:-22043606 | None:intergenic |
| TTGGGTTGGAGTGTTGTTGG+GGG | 0.394607 | 7.3:-22043608 | None:intergenic |
| CTAGACATCAAAACAGTGTT+TGG | 0.400410 | 7.3:+22045948 | MS.gene41819:CDS |
| CCATGTTCATTTGTGGGAAC+TGG | 0.410202 | 7.3:-22046005 | None:intergenic |
| TCATGTGGTGGTGTTCTTAG+TGG | 0.413935 | 7.3:+22044027 | MS.gene41819:CDS |
| CCTGCTGCATCTGGCGTTGT+CGG | 0.413984 | 7.3:-22043840 | None:intergenic |
| TCAAGTATGAGAATTTGTTC+TGG | 0.415342 | 7.3:-22043679 | None:intergenic |
| GAAGGTGCCAGTAATATAAC+AGG | 0.422710 | 7.3:+22045873 | MS.gene41819:CDS |
| CCGACAACGCCAGATGCAGC+AGG | 0.426272 | 7.3:+22043840 | MS.gene41819:CDS |
| GGTGTCCACCTTGACCTAAC+CGG | 0.426373 | 7.3:-22043652 | None:intergenic |
| TGGGTTGGAGTGTTGTTGGG+GGG | 0.427678 | 7.3:-22043607 | None:intergenic |
| CAAGATGCCATGTTCATTTG+TGG | 0.439026 | 7.3:-22046012 | None:intergenic |
| TGGCAACAGTGTTTATCAAT+GGG | 0.442136 | 7.3:+22045898 | MS.gene41819:CDS |
| AAGTGCAATTCCTTGTGATA+TGG | 0.444028 | 7.3:+22043930 | MS.gene41819:CDS |
| TTGGCAACAGTGTTTATCAA+TGG | 0.459800 | 7.3:+22045897 | MS.gene41819:CDS |
| CCGAGAAAACTGAACCGGTT+AGG | 0.473633 | 7.3:+22043638 | MS.gene41819:CDS |
| TGGTATTACTAAGGATATGA+AGG | 0.475491 | 7.3:+22045855 | MS.gene41819:intron |
| AAGATGCCATGTTCATTTGT+GGG | 0.479061 | 7.3:-22046011 | None:intergenic |
| TAGTTGAAATTAGGAGAAAG+AGG | 0.501074 | 7.3:-22044144 | None:intergenic |
| CACCATGCCACTGTTGAAGA+TGG | 0.505097 | 7.3:-22043704 | None:intergenic |
| GGTTCTTCCTCTTCATCATG+TGG | 0.507710 | 7.3:+22044012 | MS.gene41819:CDS |
| GTGATGTTAGTTCATTCCTC+TGG | 0.509716 | 7.3:+22045978 | MS.gene41819:CDS |
| CCTAATTTCAACTATCACTC+TGG | 0.510567 | 7.3:+22044153 | MS.gene41819:CDS |
| TGCCAGTAATATAACAGGAT+TGG | 0.512001 | 7.3:+22045878 | MS.gene41819:CDS |
| TTCTCGGAACCATGTTGGGT+TGG | 0.525597 | 7.3:-22043622 | None:intergenic |
| TGGTTCCGAGAAAACTGAAC+CGG | 0.529515 | 7.3:+22043633 | MS.gene41819:CDS |
| GTGATGCTAACGTCTTCTAC+TGG | 0.530664 | 7.3:+22043788 | MS.gene41819:CDS |
| AGTGGTCAACAAGGCATGGA+TGG | 0.541797 | 7.3:+22044045 | MS.gene41819:CDS |
| TGAAATTAGGAGAAAGAGGA+GGG | 0.553578 | 7.3:-22044140 | None:intergenic |
| CTTGAGAAATTCGGCAACGT+CGG | 0.555714 | 7.3:+22043766 | MS.gene41819:CDS |
| ATTTCTTTGCTGATCAAGTG+TGG | 0.555910 | 7.3:-22043863 | None:intergenic |
| AACACCACCACATGATGAAG+AGG | 0.558375 | 7.3:-22044019 | None:intergenic |
| TTGAAATTAGGAGAAAGAGG+AGG | 0.567678 | 7.3:-22044141 | None:intergenic |
| ATTGCAACAGAAATTCAAGC+GGG | 0.569187 | 7.3:+22045921 | MS.gene41819:CDS |
| GCTGCATCTGGCGTTGTCGG+CGG | 0.572272 | 7.3:-22043837 | None:intergenic |
| TCTTCCTCTTCATCATGTGG+TGG | 0.579085 | 7.3:+22044015 | MS.gene41819:CDS |
| AGAAGAATCATTTAAACAAG+AGG | 0.579493 | 7.3:-22043989 | None:intergenic |
| GTCGGCGGCGAGATCTAGAC+CGG | 0.586191 | 7.3:-22043822 | None:intergenic |
| CCAGTTCCCACAAATGAACA+TGG | 0.590552 | 7.3:+22046005 | MS.gene41819:CDS |
| TGATCAGCAAAGAAATCAGA+TGG | 0.591537 | 7.3:+22043870 | MS.gene41819:CDS |
| TCTTAGTGGTCAACAAGGCA+TGG | 0.594370 | 7.3:+22044041 | MS.gene41819:CDS |
| AGAATCATTTAAACAAGAGG+AGG | 0.602089 | 7.3:-22043986 | None:intergenic |
| AGAGGAGGGCACAAAAGTGA+TGG | 0.605244 | 7.3:-22044126 | None:intergenic |
| AAACTGAACCGGTTAGGTCA+AGG | 0.615654 | 7.3:+22043644 | MS.gene41819:CDS |
| AACAACACTCCAACCCAACA+TGG | 0.616195 | 7.3:+22043613 | MS.gene41819:CDS |
| GTCCATCTTCAACAGTGGCA+TGG | 0.623516 | 7.3:+22043702 | MS.gene41819:CDS |
| TCTACTGGTTCCAAAACCGC+CGG | 0.624539 | 7.3:+22043803 | MS.gene41819:CDS |
| CTTGAGTCCATCTTCAACAG+TGG | 0.626929 | 7.3:+22043697 | MS.gene41819:CDS |
| GGTTCAAACCAACCCAACCA+TGG | 0.628192 | 7.3:+22043951 | MS.gene41819:CDS |
| CCTCAGCAAGTTGTTAACGA+TGG | 0.634528 | 7.3:+22043904 | MS.gene41819:CDS |
| CCATCGTTAACAACTTGCTG+AGG | 0.647740 | 7.3:-22043904 | None:intergenic |
| TGTGGGAACTGGCACACCAG+AGG | 0.654766 | 7.3:-22045994 | None:intergenic |
| TTGGTTTGAACCATATCACA+AGG | 0.660599 | 7.3:-22043940 | None:intergenic |
| GGTGTTCTTAGTGGTCAACA+AGG | 0.660710 | 7.3:+22044036 | MS.gene41819:CDS |
| GATTGCAACAGAAATTCAAG+CGG | 0.666279 | 7.3:+22045920 | MS.gene41819:CDS |
| CTGAACCGGTTAGGTCAAGG+TGG | 0.696695 | 7.3:+22043647 | MS.gene41819:CDS |
| GGCGGCGAGATCTAGACCGG+CGG | 0.697708 | 7.3:-22043819 | None:intergenic |
| TTGATTCAGAGCTTGCACCA+TGG | 0.703765 | 7.3:+22046032 | MS.gene41819:CDS |
| CCAGAAAGTAGCTTTCACCA+TGG | 0.713476 | 7.3:-22046049 | None:intergenic |
| TTGCAACAGAAATTCAAGCG+GGG | 0.718011 | 7.3:+22045922 | MS.gene41819:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATAATATTTTTAAAAAAAA+GGG | + | chr7.3:22045250-22045269 | MS.gene41819:intron | 0.0% |
| !!! | TTATAATATTTTTAAAAAAA+AGG | + | chr7.3:22045249-22045268 | MS.gene41819:intron | 0.0% |
| !! | AAAAAAAAAAAACATAATCT+AGG | - | chr7.3:22045106-22045125 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACATAATCTA+GGG | - | chr7.3:22045105-22045124 | None:intergenic | 10.0% |
| !! | TAACAAATAAAATTTAACAT+CGG | - | chr7.3:22045401-22045420 | None:intergenic | 10.0% |
| !!! | ATGTTCTAATAATTTTATTT+TGG | + | chr7.3:22045835-22045854 | MS.gene41819:intron | 10.0% |
| !!! | TAATATTTTTAAAAAAAAGG+GGG | + | chr7.3:22045252-22045271 | MS.gene41819:intron | 10.0% |
| !! | AAAAATTGTTAATCAAACTT+AGG | + | chr7.3:22045492-22045511 | MS.gene41819:intron | 15.0% |
| !! | AACAAATAAAATTTAACATC+GGG | - | chr7.3:22045400-22045419 | None:intergenic | 15.0% |
| !! | GAATAATACAAAATTATTTG+TGG | - | chr7.3:22044295-22044314 | None:intergenic | 15.0% |
| !! | TTAAAAAAAGTTCATGTTTA+TGG | + | chr7.3:22044861-22044880 | MS.gene41819:intron | 15.0% |
| !!! | AAAATTCATTTTAAAATCCA+TGG | + | chr7.3:22044213-22044232 | MS.gene41819:intron | 15.0% |
| !!! | AATTTTATTTGTTAACCTTT+CGG | + | chr7.3:22045407-22045426 | MS.gene41819:intron | 15.0% |
| !!! | AGTTTGAAATTTATCAAAAT+TGG | - | chr7.3:22044404-22044423 | None:intergenic | 15.0% |
| !!! | ATTTTATTTTGGTATTACTA+AGG | + | chr7.3:22045846-22045865 | MS.gene41819:intron | 15.0% |
| !!! | TTGTAAATTTTCAATTAAGT+TGG | - | chr7.3:22045307-22045326 | None:intergenic | 15.0% |
| !! | AAAAAAGTGAGAGAATAAAA+AGG | - | chr7.3:22045033-22045052 | None:intergenic | 20.0% |
| !! | AAAATTTGTAACATCAGATT+TGG | - | chr7.3:22044751-22044770 | None:intergenic | 20.0% |
| !! | AAATTTATCAAAATTGGACT+AGG | - | chr7.3:22044398-22044417 | None:intergenic | 20.0% |
| !! | AGGAAATATATATGTTGAAT+AGG | - | chr7.3:22044718-22044737 | None:intergenic | 20.0% |
| !! | ATCAGAATTAACAATTTCAT+TGG | + | chr7.3:22044544-22044563 | MS.gene41819:intron | 20.0% |
| !! | TATAAAACTATTCAACTTTG+CGG | + | chr7.3:22045203-22045222 | MS.gene41819:intron | 20.0% |
| !! | TTTGATATATGTAACTTTCA+TGG | - | chr7.3:22044577-22044596 | None:intergenic | 20.0% |
| !!! | ATTTTGATAGTTTCTTCTTT+TGG | - | chr7.3:22043736-22043755 | None:intergenic | 20.0% |
| !!! | GAATAGTTTTATACAAATGA+TGG | - | chr7.3:22045196-22045215 | None:intergenic | 20.0% |
| !!! | TAAATTTTCAATTAAGTTGG+TGG | - | chr7.3:22045304-22045323 | None:intergenic | 20.0% |
| !!! | TTTGTGATTTTAGTATGAAT+TGG | - | chr7.3:22044245-22044264 | None:intergenic | 20.0% |
| !!! | TTTTGATAGTTTCTTCTTTT+GGG | - | chr7.3:22043735-22043754 | None:intergenic | 20.0% |
| ! | AGAAAACTTCTTGAGAAATT+CGG | + | chr7.3:22043757-22043776 | MS.gene41819:CDS | 25.0% |
| ! | AGAAGAATCATTTAAACAAG+AGG | - | chr7.3:22043992-22044011 | None:intergenic | 25.0% |
| ! | TGTTTATGGAATGATTGATT+AGG | + | chr7.3:22044875-22044894 | MS.gene41819:intron | 25.0% |
| !! | AATATAGCACAGTGTATTTT+GGG | - | chr7.3:22045374-22045393 | None:intergenic | 25.0% |
| !! | ATTAGAGAAAGCATATACAA+AGG | + | chr7.3:22044515-22044534 | MS.gene41819:intron | 25.0% |
| !! | TAATATAGCACAGTGTATTT+TGG | - | chr7.3:22045375-22045394 | None:intergenic | 25.0% |
| !! | TACAAATGATGGAAAAAACT+AGG | - | chr7.3:22045185-22045204 | None:intergenic | 25.0% |
| !! | TCTTGTTTAAATGATTCTTC+TGG | + | chr7.3:22043991-22044010 | MS.gene41819:CDS | 25.0% |
| !! | TTTTCAGTTTCTTCTCAAAT+GGG | + | chr7.3:22044072-22044091 | MS.gene41819:CDS | 25.0% |
| !!! | CTTTTTTTAAACTAAGTGCA+TGG | - | chr7.3:22044851-22044870 | None:intergenic | 25.0% |
| !!! | TAGCATTTTTTTCAGTGATT+GGG | + | chr7.3:22045704-22045723 | MS.gene41819:intron | 25.0% |
| !!! | TTTGATAGTTTCTTCTTTTG+GGG | - | chr7.3:22043734-22043753 | None:intergenic | 25.0% |
| !!! | TTTTTTATGAGATTTGAGCA+TGG | + | chr7.3:22044680-22044699 | MS.gene41819:intron | 25.0% |
| AAGTGAGAGAATAAAAAGGA+AGG | - | chr7.3:22045029-22045048 | None:intergenic | 30.0% | |
| ACCAAACAATTGAACTAAAG+TGG | - | chr7.3:22045555-22045574 | None:intergenic | 30.0% | |
| AGAATCATTTAAACAAGAGG+AGG | - | chr7.3:22043989-22044008 | None:intergenic | 30.0% | |
| CCAATACTCATTAATAACAC+TGG | - | chr7.3:22044787-22044806 | None:intergenic | 30.0% | |
| CTGAAAAAAATGCTAGAAGA+CGG | - | chr7.3:22045699-22045718 | None:intergenic | 30.0% | |
| TAGTTGAAATTAGGAGAAAG+AGG | - | chr7.3:22044147-22044166 | None:intergenic | 30.0% | |
| TGATAATTCGAAGTTCGATT+AGG | + | chr7.3:22045450-22045469 | MS.gene41819:intron | 30.0% | |
| TGGAAAAAACTAGGAATGTA+TGG | - | chr7.3:22045176-22045195 | None:intergenic | 30.0% | |
| TGGTATTACTAAGGATATGA+AGG | + | chr7.3:22045855-22045874 | MS.gene41819:intron | 30.0% | |
| TTAACCGCAATGTTTATTAC+CGG | + | chr7.3:22045574-22045593 | MS.gene41819:intron | 30.0% | |
| TTGTATTTGACCAATGTGTA+TGG | + | chr7.3:22045810-22045829 | MS.gene41819:intron | 30.0% | |
| ! | AATGTTTATTACCGGTTGAA+AGG | + | chr7.3:22045582-22045601 | MS.gene41819:intron | 30.0% |
| ! | ACCACTTTAGTTCAATTGTT+TGG | + | chr7.3:22045551-22045570 | MS.gene41819:intron | 30.0% |
| ! | CCAGTGTTATTAATGAGTAT+TGG | + | chr7.3:22044784-22044803 | MS.gene41819:intron | 30.0% |
| ! | GTTTTCAGTTTCTTCTCAAA+TGG | + | chr7.3:22044071-22044090 | MS.gene41819:CDS | 30.0% |
| ! | TAGGCTTTGATGTAATATGT+TGG | - | chr7.3:22044379-22044398 | None:intergenic | 30.0% |
| ! | TCAAGTATGAGAATTTGTTC+TGG | - | chr7.3:22043682-22043701 | None:intergenic | 30.0% |
| ! | TCAGATTTGGAATTTATGCA+AGG | - | chr7.3:22044738-22044757 | None:intergenic | 30.0% |
| ! | TTGACTTCTTAATGATAACG+TGG | + | chr7.3:22045631-22045650 | MS.gene41819:intron | 30.0% |
| ! | TTTTAAACTAAGTGCATGGA+TGG | - | chr7.3:22044847-22044866 | None:intergenic | 30.0% |
| !! | TTGATAGTTTCTTCTTTTGG+GGG | - | chr7.3:22043733-22043752 | None:intergenic | 30.0% |
| !!! | ATGAGAATTTGTTCTGGTTT+TGG | - | chr7.3:22043676-22043695 | None:intergenic | 30.0% |
| !!! | CTAGCATTTTTTTCAGTGAT+TGG | + | chr7.3:22045703-22045722 | MS.gene41819:intron | 30.0% |
| AAGATGCCATGTTCATTTGT+GGG | - | chr7.3:22046014-22046033 | None:intergenic | 35.0% | |
| AAGTGCAATTCCTTGTGATA+TGG | + | chr7.3:22043930-22043949 | MS.gene41819:CDS | 35.0% | |
| ATTGCAACAGAAATTCAAGC+GGG | + | chr7.3:22045921-22045940 | MS.gene41819:CDS | 35.0% | |
| ATTTACAGACTCCTTTCAAC+CGG | - | chr7.3:22045596-22045615 | None:intergenic | 35.0% | |
| ATTTCTTTGCTGATCAAGTG+TGG | - | chr7.3:22043866-22043885 | None:intergenic | 35.0% | |
| CCAGAGTGATAGTTGAAATT+AGG | - | chr7.3:22044156-22044175 | None:intergenic | 35.0% | |
| CCTAATTTCAACTATCACTC+TGG | + | chr7.3:22044153-22044172 | MS.gene41819:CDS | 35.0% | |
| CTAGACATCAAAACAGTGTT+TGG | + | chr7.3:22045948-22045967 | MS.gene41819:CDS | 35.0% | |
| GATTGATTAGGTTACAGGAT+GGG | + | chr7.3:22044887-22044906 | MS.gene41819:intron | 35.0% | |
| GATTGCAACAGAAATTCAAG+CGG | + | chr7.3:22045920-22045939 | MS.gene41819:CDS | 35.0% | |
| GGAATGATTGATTAGGTTAC+AGG | + | chr7.3:22044882-22044901 | MS.gene41819:intron | 35.0% | |
| GTGATTGGGATATGAAATTC+AGG | + | chr7.3:22045718-22045737 | MS.gene41819:intron | 35.0% | |
| TAGAACATCACCATACACAT+TGG | - | chr7.3:22045823-22045842 | None:intergenic | 35.0% | |
| TATTTCTCATGAGAACCGAA+AGG | - | chr7.3:22045425-22045444 | None:intergenic | 35.0% | |
| TCAACCGGTAATAAACATTG+CGG | - | chr7.3:22045581-22045600 | None:intergenic | 35.0% | |
| TCAACTATCACTCTGGTAAT+TGG | + | chr7.3:22044160-22044179 | MS.gene41819:intron | 35.0% | |
| TCCATTCGCTGTGTAAAATT+TGG | - | chr7.3:22044625-22044644 | None:intergenic | 35.0% | |
| TGAAATTAGGAGAAAGAGGA+GGG | - | chr7.3:22044143-22044162 | None:intergenic | 35.0% | |
| TGATCAGCAAAGAAATCAGA+TGG | + | chr7.3:22043870-22043889 | MS.gene41819:CDS | 35.0% | |
| TGATTGATTAGGTTACAGGA+TGG | + | chr7.3:22044886-22044905 | MS.gene41819:intron | 35.0% | |
| TGCATGAAAGTTGTTCTTTC+CGG | + | chr7.3:22044965-22044984 | MS.gene41819:intron | 35.0% | |
| TGCCAATCCTGTTATATTAC+TGG | - | chr7.3:22045883-22045902 | None:intergenic | 35.0% | |
| TGCCAGTAATATAACAGGAT+TGG | + | chr7.3:22045878-22045897 | MS.gene41819:CDS | 35.0% | |
| TGGCAACAGTGTTTATCAAT+GGG | + | chr7.3:22045898-22045917 | MS.gene41819:CDS | 35.0% | |
| TTCATGCAACAATTCAAACG+CGG | - | chr7.3:22044953-22044972 | None:intergenic | 35.0% | |
| TTGAAATTAGGAGAAAGAGG+AGG | - | chr7.3:22044144-22044163 | None:intergenic | 35.0% | |
| TTGGCAACAGTGTTTATCAA+TGG | + | chr7.3:22045897-22045916 | MS.gene41819:CDS | 35.0% | |
| ! | AAAACATGAACGCTACTTTC+CGG | + | chr7.3:22044989-22045008 | MS.gene41819:intron | 35.0% |
| ! | AAGTAGCGTTCATGTTTTTC+CGG | - | chr7.3:22044987-22045006 | None:intergenic | 35.0% |
| ! | TTGGTTTGAACCATATCACA+AGG | - | chr7.3:22043943-22043962 | None:intergenic | 35.0% |
| !! | TCTTCTCAAATGGGTTTTCT+TGG | + | chr7.3:22044081-22044100 | MS.gene41819:CDS | 35.0% |
| !!! | AACACTGTTTTGATGTCTAG+TGG | - | chr7.3:22045948-22045967 | None:intergenic | 35.0% |
| AACCACCAAAAACCATGGTT+GGG | - | chr7.3:22043966-22043985 | None:intergenic | 40.0% | |
| AGGATGGGTACAGAATAAAG+TGG | + | chr7.3:22044902-22044921 | MS.gene41819:intron | 40.0% | |
| CAAGATGCCATGTTCATTTG+TGG | - | chr7.3:22046015-22046034 | None:intergenic | 40.0% | |
| GGATGGGTACAGAATAAAGT+GGG | + | chr7.3:22044903-22044922 | MS.gene41819:intron | 40.0% | |
| GTGATGTTAGTTCATTCCTC+TGG | + | chr7.3:22045978-22045997 | MS.gene41819:CDS | 40.0% | |
| TTCACTGAATAAGTCGTGCT+TGG | + | chr7.3:22045516-22045535 | MS.gene41819:intron | 40.0% | |
| TTGCAACAGAAATTCAAGCG+GGG | + | chr7.3:22045922-22045941 | MS.gene41819:CDS | 40.0% | |
| ! | AGTTTTCTCGGAACCATGTT+GGG | - | chr7.3:22043629-22043648 | None:intergenic | 40.0% |
| ! | GCCAAATTTTACACAGCGAA+TGG | + | chr7.3:22044621-22044640 | MS.gene41819:intron | 40.0% |
| !! | GAAGGTGCCAGTAATATAAC+AGG | + | chr7.3:22045873-22045892 | MS.gene41819:CDS | 40.0% |
| !!! | GGATCTGTTGATTTTGCAAG+AGG | - | chr7.3:22045283-22045302 | None:intergenic | 40.0% |
| AAACTGAACCGGTTAGGTCA+AGG | + | chr7.3:22043644-22043663 | MS.gene41819:CDS | 45.0% | |
| AACAACACTCCAACCCAACA+TGG | + | chr7.3:22043613-22043632 | MS.gene41819:CDS | 45.0% | |
| AACACCACCACATGATGAAG+AGG | - | chr7.3:22044022-22044041 | None:intergenic | 45.0% | |
| AACGCGGAACTGTCAAATCA+AGG | - | chr7.3:22044937-22044956 | None:intergenic | 45.0% | |
| ACCAAAAACCATGGTTGGGT+TGG | - | chr7.3:22043962-22043981 | None:intergenic | 45.0% | |
| CCAGTTCCCACAAATGAACA+TGG | + | chr7.3:22046005-22046024 | MS.gene41819:CDS | 45.0% | |
| CCATGTTCATTTGTGGGAAC+TGG | - | chr7.3:22046008-22046027 | None:intergenic | 45.0% | |
| CCTCAGCAAGTTGTTAACGA+TGG | + | chr7.3:22043904-22043923 | MS.gene41819:CDS | 45.0% | |
| CTTGAGAAATTCGGCAACGT+CGG | + | chr7.3:22043766-22043785 | MS.gene41819:CDS | 45.0% | |
| CTTGAGTCCATCTTCAACAG+TGG | + | chr7.3:22043697-22043716 | MS.gene41819:CDS | 45.0% | |
| GAACCACCAAAAACCATGGT+TGG | - | chr7.3:22043967-22043986 | None:intergenic | 45.0% | |
| GGTGTTCTTAGTGGTCAACA+AGG | + | chr7.3:22044036-22044055 | MS.gene41819:CDS | 45.0% | |
| GGTTCTTCCTCTTCATCATG+TGG | + | chr7.3:22044012-22044031 | MS.gene41819:CDS | 45.0% | |
| GTGATGCTAACGTCTTCTAC+TGG | + | chr7.3:22043788-22043807 | MS.gene41819:CDS | 45.0% | |
| TCTTAGTGGTCAACAAGGCA+TGG | + | chr7.3:22044041-22044060 | MS.gene41819:CDS | 45.0% | |
| TCTTCCTCTTCATCATGTGG+TGG | + | chr7.3:22044015-22044034 | MS.gene41819:CDS | 45.0% | |
| TGGTTCCGAGAAAACTGAAC+CGG | + | chr7.3:22043633-22043652 | MS.gene41819:CDS | 45.0% | |
| TTGATTCAGAGCTTGCACCA+TGG | + | chr7.3:22046032-22046051 | MS.gene41819:CDS | 45.0% | |
| ! | ACCAACCCAACCATGGTTTT+TGG | + | chr7.3:22043958-22043977 | MS.gene41819:CDS | 45.0% |
| ! | CAGTTTTCTCGGAACCATGT+TGG | - | chr7.3:22043630-22043649 | None:intergenic | 45.0% |
| ! | GTATGAATTGGAGTGCTCCA+TGG | - | chr7.3:22044233-22044252 | None:intergenic | 45.0% |
| ! | TCATGTGGTGGTGTTCTTAG+TGG | + | chr7.3:22044027-22044046 | MS.gene41819:CDS | 45.0% |
| !! | AACCCAACCATGGTTTTTGG+TGG | + | chr7.3:22043961-22043980 | MS.gene41819:CDS | 45.0% |
| !! | ATGTTGGGTTGGAGTGTTGT+TGG | - | chr7.3:22043614-22043633 | None:intergenic | 45.0% |
| !! | CCATCGTTAACAACTTGCTG+AGG | - | chr7.3:22043907-22043926 | None:intergenic | 45.0% |
| !! | CCTAACCGGTTCAGTTTTCT+CGG | - | chr7.3:22043641-22043660 | None:intergenic | 45.0% |
| !! | TGTTGGGTTGGAGTGTTGTT+GGG | - | chr7.3:22043613-22043632 | None:intergenic | 45.0% |
| !!! | ATAATATTTTTAAAAAAAAG+GGG | + | chr7.3:22045251-22045270 | MS.gene41819:intron | 5.0% |
| AGTGGTCAACAAGGCATGGA+TGG | + | chr7.3:22044045-22044064 | MS.gene41819:CDS | 50.0% | |
| CACCATGCCACTGTTGAAGA+TGG | - | chr7.3:22043707-22043726 | None:intergenic | 50.0% | |
| CCGAGAAAACTGAACCGGTT+AGG | + | chr7.3:22043638-22043657 | MS.gene41819:CDS | 50.0% | |
| GAAGGAACAGAAACTGCAGC+CGG | - | chr7.3:22045011-22045030 | None:intergenic | 50.0% | |
| GGAGGAACCACCAAAAACCA+TGG | - | chr7.3:22043971-22043990 | None:intergenic | 50.0% | |
| GGTTCAAACCAACCCAACCA+TGG | + | chr7.3:22043951-22043970 | MS.gene41819:CDS | 50.0% | |
| GTCCATCTTCAACAGTGGCA+TGG | + | chr7.3:22043702-22043721 | MS.gene41819:CDS | 50.0% | |
| TTCTCGGAACCATGTTGGGT+TGG | - | chr7.3:22043625-22043644 | None:intergenic | 50.0% | |
| ! | AGAGGAGGGCACAAAAGTGA+TGG | - | chr7.3:22044129-22044148 | None:intergenic | 50.0% |
| !! | GTTGGGTTGGAGTGTTGTTG+GGG | - | chr7.3:22043612-22043631 | None:intergenic | 50.0% |
| !! | TCTACTGGTTCCAAAACCGC+CGG | + | chr7.3:22043803-22043822 | MS.gene41819:CDS | 50.0% |
| !! | TTGGGTTGGAGTGTTGTTGG+GGG | - | chr7.3:22043611-22043630 | None:intergenic | 50.0% |
| CTGAACCGGTTAGGTCAAGG+TGG | + | chr7.3:22043647-22043666 | MS.gene41819:CDS | 55.0% | |
| GGTGTCCACCTTGACCTAAC+CGG | - | chr7.3:22043655-22043674 | None:intergenic | 55.0% | |
| ! | GAGATCTAGACCGGCGGTTT+TGG | - | chr7.3:22043816-22043835 | None:intergenic | 55.0% |
| !! | TGGGTTGGAGTGTTGTTGGG+GGG | - | chr7.3:22043610-22043629 | None:intergenic | 55.0% |
| CAAGTGTGGCCTGCTGCATC+TGG | - | chr7.3:22043852-22043871 | None:intergenic | 60.0% | |
| CCTGCTGCATCTGGCGTTGT+CGG | - | chr7.3:22043843-22043862 | None:intergenic | 60.0% | |
| TGTGGGAACTGGCACACCAG+AGG | - | chr7.3:22045997-22046016 | None:intergenic | 60.0% | |
| !! | GGGTTGGAGTGTTGTTGGGG+GGG | - | chr7.3:22043609-22043628 | None:intergenic | 60.0% |
| CCGACAACGCCAGATGCAGC+AGG | + | chr7.3:22043840-22043859 | MS.gene41819:CDS | 65.0% | |
| GCTGCATCTGGCGTTGTCGG+CGG | - | chr7.3:22043840-22043859 | None:intergenic | 65.0% | |
| GTCGGCGGCGAGATCTAGAC+CGG | - | chr7.3:22043825-22043844 | None:intergenic | 65.0% | |
| GGCGGCGAGATCTAGACCGG+CGG | - | chr7.3:22043822-22043841 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 22043583 | 22046070 | 22043583 | ID=MS.gene41819 |
| chr7.3 | mRNA | 22043583 | 22046070 | 22043583 | ID=MS.gene41819.t1;Parent=MS.gene41819 |
| chr7.3 | exon | 22043583 | 22044174 | 22043583 | ID=MS.gene41819.t1.exon1;Parent=MS.gene41819.t1 |
| chr7.3 | CDS | 22043583 | 22044174 | 22043583 | ID=cds.MS.gene41819.t1;Parent=MS.gene41819.t1 |
| chr7.3 | exon | 22045868 | 22046070 | 22045868 | ID=MS.gene41819.t1.exon2;Parent=MS.gene41819.t1 |
| chr7.3 | CDS | 22045868 | 22046070 | 22045868 | ID=cds.MS.gene41819.t1;Parent=MS.gene41819.t1 |
| Gene Sequence |
| Protein sequence |
