AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41837

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41837.t1 MTR_7g110060 84.483 58 4 1 2 59 238 290 3.45e-25 100
MS.gene41837.t1 MTR_7g110060 84.483 58 4 1 2 59 238 290 4.33e-25 100
MS.gene41837.t1 MTR_8g432510 81.034 58 6 1 2 59 302 354 1.32e-24 99.8
MS.gene41837.t1 MTR_1g086370 81.034 58 6 1 2 59 119 171 1.88e-24 97.1
MS.gene41837.t1 MTR_1g084760 82.759 58 5 1 2 59 238 290 2.22e-24 98.6
MS.gene41837.t1 MTR_7g076030 79.661 59 7 1 2 60 304 357 4.34e-24 98.2
MS.gene41837.t1 MTR_7g076030 81.034 58 6 1 2 59 197 249 5.03e-24 97.1
MS.gene41837.t1 MTR_1g086370 81.034 58 6 1 2 59 205 257 5.67e-24 97.1
MS.gene41837.t1 MTR_1g086370 81.034 58 6 1 2 59 238 290 6.44e-24 97.4
MS.gene41837.t1 MTR_2g005620 81.034 58 6 1 2 59 253 305 9.91e-24 97.1
MS.gene41837.t1 MTR_2g083940 79.310 58 7 1 2 59 197 249 5.87e-23 94.4
MS.gene41837.t1 MTR_2g083940 79.310 58 7 1 2 59 251 303 8.55e-23 94.4
MS.gene41837.t1 MTR_2g016490 75.862 58 9 1 2 59 203 255 4.54e-22 92.0
MS.gene41837.t1 MTR_8g062030 35.043 117 50 2 57 148 335 450 1.46e-13 68.6
MS.gene41837.t1 MTR_7g114300 49.123 57 24 1 4 60 272 323 1.53e-12 65.5
MS.gene41837.t1 MTR_7g114300 49.123 57 24 1 4 60 272 323 1.69e-12 65.5
MS.gene41837.t1 MTR_7g114300 49.123 57 24 1 4 60 272 323 2.12e-12 64.7
MS.gene41837.t1 MTR_7g114300 49.123 57 24 1 4 60 272 323 2.74e-12 64.7
MS.gene41837.t1 MTR_1g081870 47.368 57 25 1 4 60 287 338 5.95e-12 63.9
MS.gene41837.t1 MTR_5g078250 37.391 115 47 2 57 147 334 447 6.33e-12 63.5
MS.gene41837.t1 MTR_5g008860 45.614 57 26 1 4 60 305 356 6.53e-12 63.5
MS.gene41837.t1 MTR_2g020210 47.368 57 25 1 4 60 267 318 6.91e-12 63.5
MS.gene41837.t1 MTR_7g078690 29.762 168 91 6 1 158 200 350 7.44e-12 63.2
MS.gene41837.t1 MTR_4g007750 45.614 57 26 1 4 60 185 236 9.13e-12 62.8
MS.gene41837.t1 MTR_4g118780 47.368 57 25 1 4 60 269 320 1.37e-11 62.8
MS.gene41837.t1 MTR_8g028720 54.902 51 18 1 4 54 202 247 1.53e-11 62.4
MS.gene41837.t1 MTR_8g092290 34.066 91 45 2 1 81 303 388 1.61e-11 62.4
MS.gene41837.t1 MTR_4g094430 38.806 67 34 2 4 70 168 227 2.65e-11 61.2
MS.gene41837.t1 MTR_0042s0170 35.088 114 49 3 57 145 166 279 7.10e-11 60.5
MS.gene41837.t1 MTR_4g061330 35.789 95 52 2 4 98 9 94 8.40e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41837.t1 AT5G14640 84.483 58 4 1 2 59 237 289 5.43e-25 100
MS.gene41837.t1 AT5G14640 84.483 58 4 1 2 59 237 289 5.43e-25 100
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 119 171 4.20e-24 96.3
MS.gene41837.t1 AT3G05840 81.034 58 6 1 2 59 236 288 6.01e-24 97.4
MS.gene41837.t1 AT3G05840 81.034 58 6 1 2 59 236 288 6.01e-24 97.4
MS.gene41837.t1 AT5G26751 81.034 58 6 1 2 59 232 284 7.33e-24 97.4
MS.gene41837.t1 AT1G57870 81.034 58 6 1 2 59 245 297 7.78e-24 97.4
MS.gene41837.t1 AT1G57870 81.034 58 6 1 2 59 245 297 7.78e-24 97.4
MS.gene41837.t1 AT1G57870 81.034 58 6 1 2 59 245 297 7.78e-24 97.4
MS.gene41837.t1 AT1G57870 81.034 58 6 1 2 59 245 297 8.07e-24 97.4
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT1G09840 79.310 58 7 1 2 59 246 298 2.09e-23 96.3
MS.gene41837.t1 AT4G18710 77.586 58 8 1 2 59 197 249 4.60e-23 93.2
MS.gene41837.t1 AT4G18710 77.586 58 8 1 2 59 203 255 1.35e-22 93.6
MS.gene41837.t1 AT2G30980 77.586 58 8 1 2 59 235 287 1.58e-22 93.6
MS.gene41837.t1 AT4G00720 74.576 59 10 1 2 60 301 354 1.97e-22 94.0
MS.gene41837.t1 AT1G06390 77.586 58 8 1 2 59 233 285 2.01e-22 93.2
MS.gene41837.t1 AT1G06390 77.586 58 8 1 2 59 233 285 2.01e-22 93.2
MS.gene41837.t1 AT3G61160 71.186 59 12 1 2 60 265 318 1.46e-21 90.9
MS.gene41837.t1 AT3G61160 71.186 59 12 1 2 60 265 318 1.62e-21 90.1
MS.gene41837.t1 AT3G61160 71.186 59 12 1 2 60 272 325 1.88e-21 90.1
MS.gene41837.t1 AT3G61160 72.414 58 11 1 2 59 265 317 2.01e-21 90.9
MS.gene41837.t1 AT3G61160 72.414 58 11 1 2 59 272 324 2.59e-21 90.5
MS.gene41837.t1 AT3G61160 72.414 58 11 1 2 59 265 317 3.00e-21 90.1
MS.gene41837.t1 AT4G10010 50.000 60 25 1 1 60 138 192 8.40e-14 68.9
MS.gene41837.t1 AT4G10010 52.632 57 22 1 4 60 321 372 1.28e-13 68.6
MS.gene41837.t1 AT2G46070 32.000 150 84 5 1 142 237 376 2.02e-13 67.8
MS.gene41837.t1 AT2G46070 32.000 150 84 5 1 142 203 342 2.12e-13 67.8
MS.gene41837.t1 AT2G38620 43.333 60 29 1 1 60 182 236 5.18e-13 65.9
MS.gene41837.t1 AT2G38620 43.333 60 29 1 1 60 182 236 5.18e-13 65.9
MS.gene41837.t1 AT2G46070 53.704 54 20 1 1 54 203 251 5.82e-13 66.2
MS.gene41837.t1 AT5G63370 50.877 57 23 1 1 57 463 514 7.59e-13 66.2
MS.gene41837.t1 AT5G63370 50.877 57 23 1 1 57 463 514 7.59e-13 66.2
MS.gene41837.t1 AT5G63370 50.877 57 23 1 1 57 463 514 8.11e-13 66.2
MS.gene41837.t1 AT5G63370 50.877 57 23 1 1 57 463 514 8.11e-13 66.2
MS.gene41837.t1 AT5G63370 50.877 57 23 1 1 57 463 514 8.11e-13 66.2
MS.gene41837.t1 AT5G63370 50.877 57 23 1 1 57 463 514 8.11e-13 66.2
MS.gene41837.t1 AT5G63370 50.877 57 23 1 1 57 463 514 8.11e-13 66.2
MS.gene41837.t1 AT5G63370 53.704 54 20 1 4 57 332 380 1.40e-12 65.5
MS.gene41837.t1 AT5G63370 53.704 54 20 1 4 57 332 380 1.41e-12 65.5
MS.gene41837.t1 AT5G63370 53.704 54 20 1 4 57 332 380 1.41e-12 65.5
MS.gene41837.t1 AT2G38620 45.614 57 26 1 4 60 123 174 1.78e-12 64.3
MS.gene41837.t1 AT2G38620 45.614 57 26 1 4 60 185 236 2.63e-12 64.3
MS.gene41837.t1 AT1G54610 49.123 57 24 1 4 60 283 334 4.52e-12 64.3
MS.gene41837.t1 AT1G54610 49.123 57 24 1 4 60 283 334 4.52e-12 64.3
MS.gene41837.t1 AT1G54610 49.123 57 24 1 4 60 283 334 4.52e-12 64.3
MS.gene41837.t1 AT3G48750 46.429 56 25 1 4 59 168 218 4.99e-12 63.5
MS.gene41837.t1 AT1G07880 33.824 136 64 6 4 127 198 319 6.74e-12 63.5
MS.gene41837.t1 AT1G76540 43.333 60 29 1 1 60 183 237 7.57e-12 63.2
MS.gene41837.t1 AT1G71530 47.368 57 25 1 4 60 312 363 1.00e-11 63.2
MS.gene41837.t1 AT1G71530 47.368 57 25 1 4 60 312 363 1.26e-11 62.8
MS.gene41837.t1 AT3G54180 43.860 57 27 1 4 60 183 234 2.15e-11 61.6
MS.gene41837.t1 AT1G01560 27.381 168 95 5 1 158 202 352 2.91e-11 61.6
MS.gene41837.t1 AT1G01560 47.541 61 27 1 4 64 205 260 3.06e-11 61.2
MS.gene41837.t1 AT1G01560 47.541 61 27 1 4 64 205 260 3.06e-11 61.2
MS.gene41837.t1 AT1G01560 52.941 51 19 1 4 54 205 250 4.09e-11 61.2

Find 43 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATGATGAGAATCTGGATTT+TGG 0.190600 7.3:-21610442 MS.gene41837:CDS
TTTAAAGTTCAGGCAGTTAT+TGG 0.206518 7.3:-21610772 MS.gene41837:intron
AACAGACTTGGAAGATTTCC+TGG 0.284639 7.3:+21610354 None:intergenic
TCTTATCAGTCACTGTTTCC+TGG 0.318560 7.3:-21612306 MS.gene41837:intron
AGATAAACAATGTGCTCATT+TGG 0.319034 7.3:-21610954 MS.gene41837:CDS
TGAGATTTACTCTCCTTCTA+AGG 0.373862 7.3:-21610665 MS.gene41837:intron
TGGTCAGTTGGTTGCGTACT+TGG 0.388547 7.3:-21612424 MS.gene41837:CDS
CAAGTCTGTTAAGGTTGTTA+AGG 0.389714 7.3:-21610341 MS.gene41837:CDS
TTCTCATCATCGTTCAAATC+AGG 0.399474 7.3:+21610454 None:intergenic
GAAATCTTCCAAGTCTGTTA+AGG 0.401790 7.3:-21610350 MS.gene41837:CDS
CTTTGTATGATGGTTCCTAT+AGG 0.404739 7.3:-21610741 MS.gene41837:CDS
TTTGAACGATGATGAGAATC+TGG 0.416433 7.3:-21610449 MS.gene41837:CDS
GTACACAAAAGCTAGTTAAC+TGG 0.433946 7.3:+21612386 None:intergenic
GGACCCCATGCTTTGTATGA+TGG 0.435370 7.3:-21610751 MS.gene41837:CDS
ACAAACCCTTCTCACCCTAT+AGG 0.443996 7.3:+21610726 None:intergenic
CCTTGATAATTTCCACAAGT+TGG 0.452229 7.3:+21612268 None:intergenic
CTTAACAACCTTAACAGACT+TGG 0.460905 7.3:+21610342 None:intergenic
CTTTGGAAGTGCTAATGTCT+TGG 0.461224 7.3:-21612634 None:intergenic
ATGAAAGACTTTAATGAGGT+TGG 0.471858 7.3:-21610388 MS.gene41837:CDS
CATCAGTTTCATCAGATGCT+TGG 0.473349 7.3:+21611020 None:intergenic
TCATTTGGTTGCTGTAGCTA+AGG 0.473734 7.3:-21610939 MS.gene41837:intron
AGAGCTCCTGAGCTTATATT+CGG 0.474562 7.3:-21612478 MS.gene41837:CDS
ACTCCTCTTGGTAGTAAGAC+TGG 0.476935 7.3:+21610414 None:intergenic
TTTGTATGATGGTTCCTATA+GGG 0.492577 7.3:-21610740 MS.gene41837:CDS
CCAACTTGTGGAAATTATCA+AGG 0.511188 7.3:-21612268 MS.gene41837:intron
AGGAACCATCATACAAAGCA+TGG 0.519567 7.3:+21610746 None:intergenic
ACACCACAACCATTGACATC+TGG 0.523107 7.3:-21612444 MS.gene41837:CDS
AGGTTGGTGTGAAGAGGTCC+AGG 0.523789 7.3:-21610372 MS.gene41837:CDS
TCACTGTTTCCTGGTGAGAG+TGG 0.525574 7.3:-21612297 MS.gene41837:CDS
ACCATTGACATCTGGTCAGT+TGG 0.528063 7.3:-21612436 MS.gene41837:CDS
GTCTTTCATGAGACTCCTCT+TGG 0.530044 7.3:+21610402 None:intergenic
ATGGTTCCTATAGGGTGAGA+AGG 0.558535 7.3:-21610732 MS.gene41837:CDS
GGAACCATCATACAAAGCAT+GGG 0.561104 7.3:+21610747 None:intergenic
TGACCAGATGTCAATGGTTG+TGG 0.568382 7.3:+21612441 None:intergenic
GTTGCACCGAATATAAGCTC+AGG 0.582148 7.3:+21612472 None:intergenic
TCTCATGAAAGACTTTAATG+AGG 0.582725 7.3:-21610392 MS.gene41837:CDS
TGGTCTACTCCACTCTCACC+AGG 0.583110 7.3:+21612288 None:intergenic
ACCAACTGACCAGATGTCAA+TGG 0.588620 7.3:+21612435 None:intergenic
TTAATGAGGTTGGTGTGAAG+AGG 0.591983 7.3:-21610378 MS.gene41837:CDS
TGGTTCCTATAGGGTGAGAA+GGG 0.594607 7.3:-21610731 MS.gene41837:CDS
GAGTGGAGTAGACCAACTTG+TGG 0.666033 7.3:-21612280 MS.gene41837:CDS
CATCCAGTCTTACTACCAAG+AGG 0.689383 7.3:-21610417 MS.gene41837:CDS
GAACCATCATACAAAGCATG+GGG 0.696724 7.3:+21610748 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAAACATTTTTTTTTACAA+AGG + chr7.3:21611376-21611395 None:intergenic 10.0%
!! AATTTAAACTCTGTATAATT+AGG + chr7.3:21610941-21610960 None:intergenic 15.0%
!! ATAGAAAAATATTACATGAT+GGG - chr7.3:21611484-21611503 MS.gene41837:intron 15.0%
!! ATGTACATGTATTTATAAAT+CGG - chr7.3:21611060-21611079 MS.gene41837:intron 15.0%
!!! ATAGCTATTTGAATTTTATA+AGG - chr7.3:21610386-21610405 MS.gene41837:CDS 15.0%
!!! ATTTTCTTTGAAAAAGAATT+TGG - chr7.3:21612101-21612120 MS.gene41837:intron 15.0%
!!! TTATTTGTTTTGAATTGTTA+AGG - chr7.3:21612338-21612357 MS.gene41837:intron 15.0%
!!! TTTTCTTTGAAAAAGAATTT+GGG - chr7.3:21612102-21612121 MS.gene41837:intron 15.0%
!! AATGAGATGGATAAATTAAA+GGG - chr7.3:21612148-21612167 MS.gene41837:intron 20.0%
!! ATATATCTTACATTTGTTCT+AGG - chr7.3:21610449-21610468 MS.gene41837:CDS 20.0%
!! CATAGAAAAATATTACATGA+TGG - chr7.3:21611483-21611502 MS.gene41837:intron 20.0%
!! GAACAAATGTAAGATATATT+TGG + chr7.3:21610448-21610467 None:intergenic 20.0%
!! TAATGAGATGGATAAATTAA+AGG - chr7.3:21612147-21612166 MS.gene41837:intron 20.0%
!! TAGAAAAATATTACATGATG+GGG - chr7.3:21611485-21611504 MS.gene41837:intron 20.0%
!! TGTAGAATGTAGAATTTATT+TGG - chr7.3:21612065-21612084 MS.gene41837:intron 20.0%
!! TTTGAATGAATTTAATGAGT+AGG - chr7.3:21611227-21611246 MS.gene41837:intron 20.0%
!!! ACATTTTTTTTTACAAAGGT+TGG + chr7.3:21611372-21611391 None:intergenic 20.0%
!!! GAATTTTACTATATGTTACA+TGG - chr7.3:21611858-21611877 MS.gene41837:intron 20.0%
!!! GCACATGTTTATATTTTATT+TGG - chr7.3:21611442-21611461 MS.gene41837:intron 20.0%
!!! TATATGGTTTTACATGTTAA+AGG - chr7.3:21610418-21610437 MS.gene41837:CDS 20.0%
!!! TTTAATTTATCCATCTCATT+AGG + chr7.3:21612148-21612167 None:intergenic 20.0%
! AAACAAATAACCAACAAATG+AGG + chr7.3:21612328-21612347 None:intergenic 25.0%
! AAACGAAATGAAAAGATGAA+AGG + chr7.3:21610824-21610843 None:intergenic 25.0%
! AAATCAACTTTATGTCAGTT+GGG + chr7.3:21611258-21611277 None:intergenic 25.0%
! AACGCCTAAATGATAAATTT+AGG + chr7.3:21612381-21612400 None:intergenic 25.0%
! ACAATAGTATAGCAATAGTA+TGG - chr7.3:21610726-21610745 MS.gene41837:CDS 25.0%
! ACTCAAATAAAGTTAACACA+TGG + chr7.3:21611834-21611853 None:intergenic 25.0%
! AGTCCAAATTCAATCAAATT+TGG + chr7.3:21611689-21611708 None:intergenic 25.0%
! ATATCATAAGTTATGTACCA+TGG + chr7.3:21611777-21611796 None:intergenic 25.0%
! ATGAGATGGATAAATTAAAG+GGG - chr7.3:21612149-21612168 MS.gene41837:intron 25.0%
! ATGCCAAATTTGATTGAATT+TGG - chr7.3:21611683-21611702 MS.gene41837:intron 25.0%
! TATAAGGACTAAATGCTATA+TGG - chr7.3:21610402-21610421 MS.gene41837:CDS 25.0%
! TGGACCTAAATTTATCATTT+AGG - chr7.3:21612374-21612393 MS.gene41837:intron 25.0%
! TGGTACATAACTTATGATAT+TGG - chr7.3:21611777-21611796 MS.gene41837:intron 25.0%
! TTGGACTTGAATAATTAGTT+TGG - chr7.3:21611702-21611721 MS.gene41837:intron 25.0%
! TTTACAAAAATCATTCCATG+AGG - chr7.3:21611631-21611650 MS.gene41837:intron 25.0%
!! AATTTTTACACCTCATTTGT+TGG - chr7.3:21612315-21612334 MS.gene41837:intron 25.0%
!!! AAAGGTTGGTAACTATAATT+TGG + chr7.3:21611358-21611377 None:intergenic 25.0%
AAAATGAAAATAGGGAACCA+TGG - chr7.3:21611757-21611776 MS.gene41837:intron 30.0%
AAACAAACGAAAGGATTTCA+AGG + chr7.3:21610362-21610381 None:intergenic 30.0%
ACATTACATACCTTATGTCA+TGG + chr7.3:21610983-21611002 None:intergenic 30.0%
AGATAAACAATGTGCTCATT+TGG - chr7.3:21612002-21612021 MS.gene41837:intron 30.0%
AGGATGAAATCCAACATTAT+CGG + chr7.3:21612128-21612147 None:intergenic 30.0%
ATACACGTTTAGACAGTTTA+AGG - chr7.3:21611906-21611925 MS.gene41837:intron 30.0%
ATGAAAGACTTTAATGAGGT+TGG - chr7.3:21612568-21612587 MS.gene41837:intron 30.0%
ATTGATACTGAGAAGATTGT+TGG - chr7.3:21612426-21612445 MS.gene41837:CDS 30.0%
CAAATCAACTTTATGTCAGT+TGG + chr7.3:21611259-21611278 None:intergenic 30.0%
GGTGTAAAAATTACCTTAGA+AGG + chr7.3:21612307-21612326 None:intergenic 30.0%
GTTTATGTAATGAAAGAGCA+AGG + chr7.3:21611039-21611058 None:intergenic 30.0%
TACTATATGTTACATGGTGA+CGG - chr7.3:21611864-21611883 MS.gene41837:intron 30.0%
TCTCATGAAAGACTTTAATG+AGG - chr7.3:21612564-21612583 MS.gene41837:intron 30.0%
TTCAATCAAATTTGGCATGT+AGG + chr7.3:21611681-21611700 None:intergenic 30.0%
TTCATTCAAACTGAATGTGA+AGG + chr7.3:21611217-21611236 None:intergenic 30.0%
TTTGTATGATGGTTCCTATA+GGG - chr7.3:21612216-21612235 MS.gene41837:intron 30.0%
! CAACTGACATAAAGTTGATT+TGG - chr7.3:21611257-21611276 MS.gene41837:intron 30.0%
! TGATTTCTTCATCTTTTGAG+TGG - chr7.3:21611181-21611200 MS.gene41837:intron 30.0%
! TTTAAAGTTCAGGCAGTTAT+TGG - chr7.3:21612184-21612203 MS.gene41837:intron 30.0%
!! GATTTCTTCATCTTTTGAGT+GGG - chr7.3:21611182-21611201 MS.gene41837:intron 30.0%
!!! GAAGATGCTTTTTAAAGTTC+AGG - chr7.3:21612174-21612193 MS.gene41837:intron 30.0%
AAAATCATTCCATGAGGTCT+AGG - chr7.3:21611637-21611656 MS.gene41837:intron 35.0%
AAGTAGGCAATCTTCAAAGT+AGG - chr7.3:21611521-21611540 MS.gene41837:intron 35.0%
AAGTGAACCACATGAAACTT+CGG + chr7.3:21610872-21610891 None:intergenic 35.0%
ACTATATGTTACATGGTGAC+GGG - chr7.3:21611865-21611884 MS.gene41837:intron 35.0%
ACTTGAGAGCTTAAGGATAA+AGG - chr7.3:21611563-21611582 MS.gene41837:intron 35.0%
ACTTGATTTCTTCCCTTGTT+GGG + chr7.3:21610910-21610929 None:intergenic 35.0%
AGTTTGGTCAAGTTACGAAT+TGG - chr7.3:21611718-21611737 MS.gene41837:intron 35.0%
ATATGTTCAAGCTAGTAGCA+AGG + chr7.3:21610788-21610807 None:intergenic 35.0%
CAAATCTCATCCATGACATA+AGG - chr7.3:21610970-21610989 MS.gene41837:CDS 35.0%
CAAGTCTGTTAAGGTTGTTA+AGG - chr7.3:21612615-21612634 MS.gene41837:intron 35.0%
CCAACTTGTGGAAATTATCA+AGG - chr7.3:21610688-21610707 MS.gene41837:CDS 35.0%
CTTAACAACCTTAACAGACT+TGG + chr7.3:21612617-21612636 None:intergenic 35.0%
CTTTGTATGATGGTTCCTAT+AGG - chr7.3:21612215-21612234 MS.gene41837:intron 35.0%
GAAATCTTCCAAGTCTGTTA+AGG - chr7.3:21612606-21612625 MS.gene41837:intron 35.0%
GCATAATATGATTGATGCCA+TGG - chr7.3:21611320-21611339 MS.gene41837:intron 35.0%
GCTATTGCAAAACAAACGAA+AGG + chr7.3:21610371-21610390 None:intergenic 35.0%
GTACACAAAAGCTAGTTAAC+TGG + chr7.3:21610573-21610592 None:intergenic 35.0%
TGAGATTTACTCTCCTTCTA+AGG - chr7.3:21612291-21612310 MS.gene41837:CDS 35.0%
TGGATTTCATCCTAATGAGA+TGG - chr7.3:21612135-21612154 MS.gene41837:intron 35.0%
TTAAGCTCTCAAGTCTTCAT+CGG + chr7.3:21611557-21611576 None:intergenic 35.0%
TTCTCATCATCGTTCAAATC+AGG + chr7.3:21612505-21612524 None:intergenic 35.0%
TTTGAACGATGATGAGAATC+TGG - chr7.3:21612507-21612526 MS.gene41837:intron 35.0%
TTTGGAAGACTTTATGACCA+TGG + chr7.3:21611340-21611359 None:intergenic 35.0%
! ACTGAGGATTTTGTCTCTTA+AGG - chr7.3:21612468-21612487 MS.gene41837:CDS 35.0%
! CCTTGATAATTTCCACAAGT+TGG + chr7.3:21610691-21610710 None:intergenic 35.0%
! GATGATGAGAATCTGGATTT+TGG - chr7.3:21612514-21612533 MS.gene41837:intron 35.0%
! TTTTTGTTACCTAGACCTCA+TGG + chr7.3:21611649-21611668 None:intergenic 35.0%
!! CATGGATGAGATTTGATTTG+AGG + chr7.3:21610965-21610984 None:intergenic 35.0%
!! GAATGTTTCACTTGATGATG+AGG - chr7.3:21612401-21612420 MS.gene41837:CDS 35.0%
!! GTTAAGGCTATGTTTTTCAG+TGG - chr7.3:21612354-21612373 MS.gene41837:intron 35.0%
!!! TGCTGTAGCTAAGGTTTTTT+TGG - chr7.3:21612026-21612045 MS.gene41837:intron 35.0%
AACAGACTTGGAAGATTTCC+TGG + chr7.3:21612605-21612624 None:intergenic 40.0%
AGAATTTGGGCCGATAATGT+TGG - chr7.3:21612115-21612134 MS.gene41837:intron 40.0%
AGAGCTCCTGAGCTTATATT+CGG - chr7.3:21610478-21610497 MS.gene41837:intron 40.0%
AGGAACCATCATACAAAGCA+TGG + chr7.3:21612213-21612232 None:intergenic 40.0%
CACTTGATTTCTTCCCTTGT+TGG + chr7.3:21610911-21610930 None:intergenic 40.0%
CATCAGTTTCATCAGATGCT+TGG + chr7.3:21611939-21611958 None:intergenic 40.0%
CTTGATTTCTTCCCTTGTTG+GGG + chr7.3:21610909-21610928 None:intergenic 40.0%
GAACCATCATACAAAGCATG+GGG + chr7.3:21612211-21612230 None:intergenic 40.0%
GATGAAGACTTGAGAGCTTA+AGG - chr7.3:21611556-21611575 MS.gene41837:intron 40.0%
GGAACCATCATACAAAGCAT+GGG + chr7.3:21612212-21612231 None:intergenic 40.0%
GGGATCATAAATGCTGAAGT+AGG - chr7.3:21611505-21611524 MS.gene41837:intron 40.0%
GTTCATTCCGAAGTTTCATG+TGG - chr7.3:21610862-21610881 MS.gene41837:intron 40.0%
TAAGCTCTCAAGTCTTCATC+GGG + chr7.3:21611556-21611575 None:intergenic 40.0%
TCATTTGGTTGCTGTAGCTA+AGG - chr7.3:21612017-21612036 MS.gene41837:intron 40.0%
TCTTATCAGTCACTGTTTCC+TGG - chr7.3:21610650-21610669 MS.gene41837:intron 40.0%
! TACTGAGAAGATTGTTGGCT+CGG - chr7.3:21612431-21612450 MS.gene41837:CDS 40.0%
!! GTACTTGGTGAACTTTTGCT+TGG - chr7.3:21610547-21610566 MS.gene41837:intron 40.0%
!! TTAATGAGGTTGGTGTGAAG+AGG - chr7.3:21612578-21612597 MS.gene41837:intron 40.0%
!!! AACTAGCTTTTGTGTACGCT+TGG - chr7.3:21610576-21610595 MS.gene41837:intron 40.0%
!!! GTTGCTTTTGACACTGACAT+GGG - chr7.3:21611970-21611989 MS.gene41837:intron 40.0%
!!! TGTTGCTTTTGACACTGACA+TGG - chr7.3:21611969-21611988 MS.gene41837:intron 40.0%
ACAAACCCTTCTCACCCTAT+AGG + chr7.3:21612233-21612252 None:intergenic 45.0%
ACACCACAACCATTGACATC+TGG - chr7.3:21610512-21610531 MS.gene41837:intron 45.0%
ACCAACTGACCAGATGTCAA+TGG + chr7.3:21610524-21610543 None:intergenic 45.0%
ACCATTGACATCTGGTCAGT+TGG - chr7.3:21610520-21610539 MS.gene41837:intron 45.0%
ATGGTTCCTATAGGGTGAGA+AGG - chr7.3:21612224-21612243 MS.gene41837:intron 45.0%
CATCCAGTCTTACTACCAAG+AGG - chr7.3:21612539-21612558 MS.gene41837:intron 45.0%
GTCTTTCATGAGACTCCTCT+TGG + chr7.3:21612557-21612576 None:intergenic 45.0%
GTTGCACCGAATATAAGCTC+AGG + chr7.3:21610487-21610506 None:intergenic 45.0%
GTTTCATGTGGTTCACTTGC+AGG - chr7.3:21610874-21610893 MS.gene41837:intron 45.0%
TGACCAGATGTCAATGGTTG+TGG + chr7.3:21610518-21610537 None:intergenic 45.0%
TGGTTCCTATAGGGTGAGAA+GGG - chr7.3:21612225-21612244 MS.gene41837:intron 45.0%
! ACTCCTCTTGGTAGTAAGAC+TGG + chr7.3:21612545-21612564 None:intergenic 45.0%
! GGTTGATGCTTCACATACTG+AGG - chr7.3:21612452-21612471 MS.gene41837:CDS 45.0%
! GTGGTTCACTTGCAGGTTTT+AGG - chr7.3:21610881-21610900 MS.gene41837:intron 45.0%
!!! AGGTTTTAGGTACCCCAACA+AGG - chr7.3:21610894-21610913 MS.gene41837:intron 45.0%
!!! GGTTTTAGGTACCCCAACAA+GGG - chr7.3:21610895-21610914 MS.gene41837:intron 45.0%
!! AAAAAAAAAAAAAAAATTGT+TGG + chr7.3:21611612-21611631 None:intergenic 5.0%
!! AAAAAAATAAAAATGAAAAT+AGG - chr7.3:21611748-21611767 MS.gene41837:intron 5.0%
!! AAAAAATAAAAATGAAAATA+GGG - chr7.3:21611749-21611768 MS.gene41837:intron 5.0%
GAGTGGAGTAGACCAACTTG+TGG - chr7.3:21610676-21610695 MS.gene41837:CDS 50.0%
GGACCCCATGCTTTGTATGA+TGG - chr7.3:21612205-21612224 MS.gene41837:intron 50.0%
TCACTGTTTCCTGGTGAGAG+TGG - chr7.3:21610659-21610678 MS.gene41837:intron 50.0%
TGGTCAGTTGGTTGCGTACT+TGG - chr7.3:21610532-21610551 MS.gene41837:intron 50.0%
CTCAAGTCTTCATCGGGTGG+AGG + chr7.3:21611550-21611569 None:intergenic 55.0%
GCTCTCAAGTCTTCATCGGG+TGG + chr7.3:21611553-21611572 None:intergenic 55.0%
TGGTCTACTCCACTCTCACC+AGG + chr7.3:21610671-21610690 None:intergenic 55.0%
!! AGGTTGGTGTGAAGAGGTCC+AGG - chr7.3:21612584-21612603 MS.gene41837:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 21610336 21612642 21610336 ID=MS.gene41837
chr7.3 mRNA 21610336 21612642 21610336 ID=MS.gene41837.t1;Parent=MS.gene41837
chr7.3 exon 21612635 21612642 21612635 ID=MS.gene41837.t1.exon1;Parent=MS.gene41837.t1
chr7.3 CDS 21612635 21612642 21612635 ID=cds.MS.gene41837.t1;Parent=MS.gene41837.t1
chr7.3 exon 21612390 21612507 21612390 ID=MS.gene41837.t1.exon2;Parent=MS.gene41837.t1
chr7.3 CDS 21612390 21612507 21612390 ID=cds.MS.gene41837.t1;Parent=MS.gene41837.t1
chr7.3 exon 21612269 21612319 21612269 ID=MS.gene41837.t1.exon3;Parent=MS.gene41837.t1
chr7.3 CDS 21612269 21612319 21612269 ID=cds.MS.gene41837.t1;Parent=MS.gene41837.t1
chr7.3 exon 21610940 21611056 21610940 ID=MS.gene41837.t1.exon4;Parent=MS.gene41837.t1
chr7.3 CDS 21610940 21611056 21610940 ID=cds.MS.gene41837.t1;Parent=MS.gene41837.t1
chr7.3 exon 21610666 21610782 21610666 ID=MS.gene41837.t1.exon5;Parent=MS.gene41837.t1
chr7.3 CDS 21610666 21610782 21610666 ID=cds.MS.gene41837.t1;Parent=MS.gene41837.t1
chr7.3 exon 21610336 21610488 21610336 ID=MS.gene41837.t1.exon6;Parent=MS.gene41837.t1
chr7.3 CDS 21610336 21610488 21610336 ID=cds.MS.gene41837.t1;Parent=MS.gene41837.t1
Gene Sequence

>MS.gene41837

ATGTCTTGGTTCGTTTCTCTTAACCTTGAAATCCTTTCGTTTGTTTTGCAATAGCTATTTGAATTTTATAAGGACTAAATGCTATATGGTTTTACATGTTAAAGGTGAACCAAATATATCTTACATTTGTTCTAGGTACTATAGAGCTCCTGAGCTTATATTCGGTGCAACTGAGTACACCACAACCATTGACATCTGGTCAGTTGGTTGCGTACTTGGTGAACTTTTGCTTGGCCAGTTAACTAGCTTTTGTGTACGCTTGGACAAGTTACATTTAGAATTCATGTATGTTAAAACTAATGATGAATTTGTGTTCTTATCAGTCACTGTTTCCTGGTGAGAGTGGAGTAGACCAACTTGTGGAAATTATCAAGGTAAGATATCTTTTAAACAATAGTATAGCAATAGTATGGAAATTGTTCAAATATCATTACTCATAGTGATATTTACCTTGCTACTAGCTTGAACATATCAGTTTTAAGTGACCTTTCATCTTTTCATTTCGTTTTGTGCTATTTTTAGTTTAGTTCATTCCGAAGTTTCATGTGGTTCACTTGCAGGTTTTAGGTACCCCAACAAGGGAAGAAATCAAGTGCATGAATCCTAATTATACAGAGTTTAAATTTCCTCAAATCAAATCTCATCCATGACATAAGGTATGTAATGTTAGTGTGTCAAACAAAACAGTATAACATTGATTCCTTGCTCTTTCATTACATAAACTATGTACATGTATTTATAAATCGGTTATGTCATGTTCTTATGAAAACTGTCATGTTCTTATGTCATGTTCTTATATAAAATGCTGATAATTTAAATGTAAATTTTGCTTCTGCTGCATAATTTGATTTCTTCATCTTTTGAGTGGGTAGTTAGCACCTTCACATTCAGTTTGAATGAATTTAATGAGTAGGATTCACCCAACTGACATAAAGTTGATTTGGTGTTACGTTTTGTGTTTCTTAAGATTTTGATAGTGAAATTGCATAATATGATTGATGCCATGGTCATAAAGTCTTCCAAATTATAGTTACCAACCTTTGTAAAAAAAAATGTTTATGTAGTGTTAAGAAATGCAAGTTCACTAGCTTATTTTAAATTTTGCTGCACATGTTTATATTTTATTTGGAATTTAAGAGTCAATTCTCATAGAAAAATATTACATGATGGGGATCATAAATGCTGAAGTAGGCAATCTTCAAAGTAGGCAGCCTCCACCCGATGAAGACTTGAGAGCTTAAGGATAAAGGTTAGACGTCTTACTAACAGTGTACCAACAATTTTTTTTTTTTTTTTTTACAAAAATCATTCCATGAGGTCTAGGTAACAAAAATAAGCTAAGCCTACATGCCAAATTTGATTGAATTTGGACTTGAATAATTAGTTTGGTCAAGTTACGAATTGGAATCTAGAAAAAAATAAAAATGAAAATAGGGAACCATGGTACATAACTTATGATATTGGTTTAATTTGAGAAAAGAGAACTATTTTCTCACCATGTGTTAACTTTATTTGAGTTTATGAATTTTACTATATGTTACATGGTGACGGGTACACATCTATTTTGAGAATACACGTTTAGACAGTTTAAGGTTAAACTCCAAGCATCTGATGAAACTGATGATGCAGTGTTTGTTGCTTTTGACACTGACATGGGTTTTCTTCTAGATAAACAATGTGCTCATTTGGTTGCTGTAGCTAAGGTTTTTTTGGTTTATATTTTATTTTTTGTAGAATGTAGAATTTATTTGGAGTGTAATACTCAATTTTCTTTGAAAAAGAATTTGGGCCGATAATGTTGGATTTCATCCTAATGAGATGGATAAATTAAAGGGGAAGAAGATGCTTTTTAAAGTTCAGGCAGTTATTGGACCCCATGCTTTGTATGATGGTTCCTATAGGGTGAGAAGGGTTTGTATTGATGAAGCTATTATTGAATTGTTTCTCACTGATGATGAGATTTACTCTCCTTCTAAGGTAATTTTTACACCTCATTTGTTGGTTATTTGTTTTGAATTGTTAAGGCTATGTTTTTCAGTGGACCTAAATTTATCATTTAGGCGTTGAATGTTTCACTTGATGATGAGGTTATTGATACTGAGAAGATTGTTGGCTCGGTTGATGCTTCACATACTGAGGATTTTGTCTCTTAAGGCTATCTCTACTCCTGATTTGAACGATGATGAGAATCTGGATTTTGGTTCATCCAGTCTTACTACCAAGAGGAGTCTCATGAAAGACTTTAATGAGGTTGGTGTGAAGAGGTCCAGGAAATCTTCCAAGTCTGTTAAGGTTGTTAAGGACTGA
Protein sequence

>MS.gene41837.t1

MSWYYRAPELIFGATEYTTTIDIWSVGCVLGELLLGQLTSFCSLFPGESGVDQLVEIIKFKVKLQASDETDDAVFVAFDTDMGFLLDKQCAHLVAVAKAVIGPHALYDGSYRVRRVCIDEAIIELFLTDDEIYSPSKAISTPDLNDDENLDFGSSSLTTKRSLMKDFNEVGVKRSRKSSKSVKVVKD