AlfalfaGEDB | MS.gene41863

M. sativa cultivar XinJiangDaYe / MS.gene41863

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF14379.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41863.t1	XP_024626468.1	96.6	208	6	1	1	208	34	240	1.90E-82	315.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41863.t1	Q9SJW0	70.8	72	19	1	4	75	41	110	8.0e-21	102.1

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41863.t1	G7L3R3	97.6	205	4	1	4	208	76	279	1.5e-81	312.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene41863.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41863.t1	MTR_7g088070	97.561	205	4	1	4	208	76	279	4.50e-143	400
MS.gene41863.t1	MTR_7g088070	95.610	205	4	2	4	208	76	275	9.54e-138	386
MS.gene41863.t1	MTR_2g027860	71.304	115	32	1	4	118	75	188	3.76e-50	166
MS.gene41863.t1	MTR_7g098250	59.459	111	42	1	4	114	288	395	7.41e-37	134
MS.gene41863.t1	MTR_1g053835	56.140	114	45	3	4	117	284	392	1.58e-35	129
MS.gene41863.t1	MTR_7g115530	54.955	111	47	1	4	114	244	351	5.18e-34	125
MS.gene41863.t1	MTR_7g093030	50.000	114	53	1	4	117	238	347	2.11e-32	120
MS.gene41863.t1	MTR_1g080330	58.716	109	42	2	4	112	201	306	7.15e-32	119
MS.gene41863.t1	MTR_4g081710	53.846	117	46	2	4	112	43	159	1.77e-31	117
MS.gene41863.t1	MTR_6g032990	49.580	119	47	2	4	109	68	186	4.63e-31	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41863.t1	AT2G01060	50.952	210	79	6	4	199	41	240	4.37e-55	177
MS.gene41863.t1	AT2G01060	48.756	201	79	6	13	199	1	191	1.29e-48	159
MS.gene41863.t1	AT3G13040	55.200	125	54	1	4	126	267	391	2.71e-37	135
MS.gene41863.t1	AT3G13040	55.200	125	54	1	4	126	267	391	2.71e-37	135
MS.gene41863.t1	AT3G13040	55.200	125	54	1	4	126	267	391	2.71e-37	135
MS.gene41863.t1	AT5G29000	55.455	110	49	0	4	113	214	323	7.11e-36	129
MS.gene41863.t1	AT5G29000	55.455	110	49	0	4	113	214	323	7.11e-36	129
MS.gene41863.t1	AT5G29000	55.455	110	49	0	4	113	257	366	1.06e-35	130
MS.gene41863.t1	AT4G28610	59.813	107	41	1	4	110	251	355	5.87e-35	128
MS.gene41863.t1	AT5G06800	55.046	109	45	1	4	112	218	322	3.70e-34	125

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Find 52 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGAGAAAAGGAATTC+TGG	0.312253	7.3:+21305656	MS.gene41863:CDS
AAAGGTGTTCTGAGAGTGAT+GGG	0.625965	7.3:+21305327	MS.gene41863:CDS
AACTTGTATGAAGATGATGC+TGG	0.625161	7.3:+21306941	MS.gene41863:CDS
AACTTTAAATTATTCATGAT+AGG	0.430793	7.3:+21305294	None:intergenic
AAGGCACCTTTACCATCACC+TGG	0.649278	7.3:-21305528	None:intergenic
AAGTACTTGCCTGAATCACC+AGG	0.571352	7.3:+21305510	MS.gene41863:CDS
AAGTGTTTCCGATGCTGCCA+AGG	0.559809	7.3:-21306729	None:intergenic
AATTCTGGAGACAGCATTTC+TGG	0.169125	7.3:+21305671	MS.gene41863:CDS
ACAAATGAGAATTGAAGCCC+AGG	0.536357	7.3:+21306658	MS.gene41863:CDS
ACATGATAAATGGTCAGTCC+AGG	0.573039	7.3:-21305354	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGATGAGAAAAGGAATTC+TGG	+	chr7.3:21305656-21305675	MS.gene41863:CDS	30.0%
AAGAGCGATCATTACATTAA+TGG	+	chr7.3:21306254-21306273	MS.gene41863:intron	30.0%
ATATCAAGGAAGTAAATGCA+CGG	-	chr7.3:21306619-21306638	None:intergenic	30.0%
ATTTACTTCCTTGATATTCC+AGG	+	chr7.3:21306622-21306641	MS.gene41863:intron	30.0%
CACATATTGATACCTGTAAA+TGG	-	chr7.3:21305386-21305405	None:intergenic	30.0%
CAGAAGAATGATTGTAATGT+TGG	+	chr7.3:21306905-21306924	MS.gene41863:CDS	30.0%
CATTTACAGGTATCAATATG+TGG	+	chr7.3:21305384-21305403	MS.gene41863:intron	30.0%
TAACTGATTAAGCATCCATA+TGG	+	chr7.3:21306164-21306183	MS.gene41863:intron	30.0%
TCATGTTAAAAGCCATTTAC+AGG	+	chr7.3:21305371-21305390	MS.gene41863:CDS	30.0%
AACTTGTATGAAGATGATGC+TGG	+	chr7.3:21306941-21306960	MS.gene41863:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	21305309	21307014	21305309	ID=MS.gene41863
chr7.3	mRNA	21305309	21307014	21305309	ID=MS.gene41863.t1;Parent=MS.gene41863
chr7.3	exon	21305309	21305392	21305309	ID=MS.gene41863.t1.exon1;Parent=MS.gene41863.t1
chr7.3	CDS	21305309	21305392	21305309	ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1
chr7.3	exon	21305495	21305543	21305495	ID=MS.gene41863.t1.exon2;Parent=MS.gene41863.t1
chr7.3	CDS	21305495	21305543	21305495	ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1
chr7.3	exon	21305651	21305708	21305651	ID=MS.gene41863.t1.exon3;Parent=MS.gene41863.t1
chr7.3	CDS	21305651	21305708	21305651	ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1
chr7.3	exon	21305804	21305873	21305804	ID=MS.gene41863.t1.exon4;Parent=MS.gene41863.t1
chr7.3	CDS	21305804	21305873	21305804	ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1
chr7.3	exon	21306644	21307014	21306644	ID=MS.gene41863.t1.exon5;Parent=MS.gene41863.t1
chr7.3	CDS	21306644	21307014	21306644	ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1

Gene Sequence

>MS.gene41863

ATGATAGGAGCAACACCGAAAGGTGTTCTGAGAGTGATGGGTGTGCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGGTATCAATATGTGGTCTAATTATTCTTTTGTGTATGTGCTACAATATTTTACTAATTTTACATGGATTCTAATTTTTTCCTATTATATATCACTACATGTAGAAGTATCGCCTGGCGAAGTACTTGCCTGAATCACCAGGTGATGGTAAAGGTGCCTTGTTTTTTCTTGCGCTTCGTAGTTCCTAAAAAGTTATGAGAAATGTCATGCTGTTTTGATTTCACATTTTCAGTTGACTCAGTTCTTTTTTGGACTTTCAGATTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCTGATTCTTCCCCGTGGGTGTCTTAGTTGTTTTCCGAAGATAATTTGTAACTCCTTCACTTTGACGCCTCTACCTCTAACATTTTAATAAAACAATCGTGCCCTGCAGGGGATTGCAAATCAATGACGCACTACGAATGCAGATGGAGGTTCAAAAACGTCTGCATGAACAGCTTGAGGTTTGTTACCTAGCTATGCTATTAGTATAAATAAGGAGGATTAGTGTTTACTCTTTGTGTATCAAATAAATCATAATCATCAATCATATCTATTAGTTAACAATCCATAGTCTTCATTTTTCTCTTATGTAAAACCCATAACTTCAACAATGATTAAACTTGGATGCTATGCCCAACCATCTTTTATTTATCATCTGTGAGTGTTAACTAATAGTTAAAACATGAGTCATTTTTCATTTTGTTTATTGATATAAATTACAACTTGTTTGTTGCATGTAACTTGAAGAAAATAACTGATTAAGCATCCATATGGCTGATTTGAGTGATAGATTTAAGTTTTAACTTACCGTAAAAACTTCAAATGTTTCTATTGTAATTTGAAGAGCGATCATTACATTAATGGTTCAACTATTAATTTCAGGTTAAATTTCTTCACGGACCATTATTTTAGATGAAACTACATTGCAATTGAACAGAAGTGCTTAACAATTTTTTTGCCTGCAATTTTTATATAATTCTTTTAAATACGTGGATTGTGTCTGTTTGATCTGAGAGTCATGCATCTTGTGTCCTGGGTAATCCATCACTTATCTATTAAATAAGCCTTCTGATAATGAAGAATTATAATTAGCTTCTAATTTACCTCGGACTCAGGATTTAAGTGTGATAATAAGATGGTTACTGTTTGTTCAATTTTATAGTATTGTGCTTCTATGAGTGAGCATTTCTGGTAATGGTAAAGCCGTGCATTTACTTCCTTGATATTCCAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCCCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAACTAGGTAGTACCTTGGCAGCATCGGAAACACTTCCGCTGTCCCATGATAAGCAAAACCAGCCCCTACCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGCACTTTTTCTCCCCATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGCTTCACTGCATCCCAAGTTACAAGAAAGACTGCTCAGAAGAATGATTGTAATGTTGGTCCTTTGGATCCAAACTTGTATGAAGATGATGCTGGCTATGGATTTGATTTGGAAACAGAAAATGACGACGGCAATGAGAGTGAGCA

Protein sequence

>MS.gene41863.t1

MIGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPGDGKDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETLPLSHDKQNQPLPEPSGSSDALAGTFSPHKKQRIDEGSKDGFTASQVTRKTAQKNDCNVGPLDPNLYEDDAGYGFDLETENDDGNESE