AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41863

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41863.t1 MTR_7g088070 97.561 205 4 1 4 208 76 279 4.50e-143 400
MS.gene41863.t1 MTR_7g088070 95.610 205 4 2 4 208 76 275 9.54e-138 386
MS.gene41863.t1 MTR_2g027860 71.304 115 32 1 4 118 75 188 3.76e-50 166
MS.gene41863.t1 MTR_7g098250 59.459 111 42 1 4 114 288 395 7.41e-37 134
MS.gene41863.t1 MTR_1g053835 56.140 114 45 3 4 117 284 392 1.58e-35 129
MS.gene41863.t1 MTR_7g115530 54.955 111 47 1 4 114 244 351 5.18e-34 125
MS.gene41863.t1 MTR_7g093030 50.000 114 53 1 4 117 238 347 2.11e-32 120
MS.gene41863.t1 MTR_1g080330 58.716 109 42 2 4 112 201 306 7.15e-32 119
MS.gene41863.t1 MTR_4g081710 53.846 117 46 2 4 112 43 159 1.77e-31 117
MS.gene41863.t1 MTR_6g032990 49.580 119 47 2 4 109 68 186 4.63e-31 117
MS.gene41863.t1 MTR_5g027440 52.101 119 44 3 4 111 51 167 3.33e-30 112
MS.gene41863.t1 MTR_2g086450 46.512 129 46 3 4 112 71 196 6.03e-29 111
MS.gene41863.t1 MTR_6g444980 52.066 121 55 3 4 122 61 180 5.51e-28 108
MS.gene41863.t1 MTR_5g041350 47.458 118 53 2 4 112 41 158 3.30e-27 106
MS.gene41863.t1 MTR_7g068600 50.943 106 46 2 4 106 39 141 1.49e-26 102
MS.gene41863.t1 MTR_6g444980 54.369 103 45 2 4 105 61 162 2.45e-26 103
MS.gene41863.t1 MTR_7g115530 58.140 86 33 1 4 89 244 326 1.39e-24 99.0
MS.gene41863.t1 MTR_1g080330 61.176 85 30 2 4 88 201 282 7.07e-23 93.6
MS.gene41863.t1 MTR_2g027800 45.283 106 47 2 4 106 65 162 1.78e-22 92.8
MS.gene41863.t1 MTR_1g090670 41.880 117 46 2 4 106 70 178 7.18e-22 91.3
MS.gene41863.t1 MTR_2g027800 40.833 120 46 2 4 106 65 176 4.11e-21 89.4
MS.gene41863.t1 MTR_1g090670 40.541 111 44 2 10 106 1 103 1.03e-18 81.3
MS.gene41863.t1 MTR_1g053800 36.364 110 66 1 4 113 203 308 2.49e-14 70.9
MS.gene41863.t1 MTR_7g115530 70.455 44 13 0 4 47 244 287 1.01e-13 68.9
MS.gene41863.t1 MTR_7g115530 81.081 37 7 0 4 40 244 280 4.79e-13 67.4
MS.gene41863.t1 MTR_5g041350 57.447 47 20 0 66 112 1 47 8.14e-12 62.8
MS.gene41863.t1 MTR_5g041350 54.000 50 23 0 63 112 20 69 1.00e-11 62.8
MS.gene41863.t1 MTR_7g093030 63.636 44 15 1 4 47 238 280 1.32e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41863.t1 AT2G01060 50.952 210 79 6 4 199 41 240 4.37e-55 177
MS.gene41863.t1 AT2G01060 48.756 201 79 6 13 199 1 191 1.29e-48 159
MS.gene41863.t1 AT3G13040 55.200 125 54 1 4 126 267 391 2.71e-37 135
MS.gene41863.t1 AT3G13040 55.200 125 54 1 4 126 267 391 2.71e-37 135
MS.gene41863.t1 AT3G13040 55.200 125 54 1 4 126 267 391 2.71e-37 135
MS.gene41863.t1 AT5G29000 55.455 110 49 0 4 113 214 323 7.11e-36 129
MS.gene41863.t1 AT5G29000 55.455 110 49 0 4 113 214 323 7.11e-36 129
MS.gene41863.t1 AT5G29000 55.455 110 49 0 4 113 257 366 1.06e-35 130
MS.gene41863.t1 AT4G28610 59.813 107 41 1 4 110 251 355 5.87e-35 128
MS.gene41863.t1 AT5G06800 55.046 109 45 1 4 112 218 322 3.70e-34 125
MS.gene41863.t1 AT3G04450 52.727 110 52 0 4 113 224 333 4.40e-34 125
MS.gene41863.t1 AT3G04450 52.727 110 52 0 4 113 224 333 4.40e-34 125
MS.gene41863.t1 AT3G04450 52.727 110 52 0 4 113 264 373 5.84e-34 125
MS.gene41863.t1 AT5G06800 54.545 110 49 1 4 112 218 327 2.45e-33 123
MS.gene41863.t1 AT1G69580 48.921 139 54 4 4 128 60 195 4.60e-33 121
MS.gene41863.t1 AT1G69580 48.571 140 54 4 4 128 60 196 6.98e-33 121
MS.gene41863.t1 AT4G13640 51.695 118 48 3 4 112 63 180 3.71e-32 118
MS.gene41863.t1 AT3G24120 53.390 118 46 3 4 112 67 184 8.54e-32 117
MS.gene41863.t1 AT5G18240 52.459 122 44 2 4 112 71 191 9.85e-32 119
MS.gene41863.t1 AT5G18240 52.459 122 44 2 4 112 71 191 9.85e-32 119
MS.gene41863.t1 AT3G04030 51.240 121 47 2 4 112 71 191 3.63e-31 117
MS.gene41863.t1 AT3G04030 50.413 121 48 2 4 112 70 190 1.32e-30 116
MS.gene41863.t1 AT1G79430 54.286 105 48 0 4 108 60 164 1.38e-30 115
MS.gene41863.t1 AT4G13640 50.413 121 48 4 4 112 63 183 4.07e-30 113
MS.gene41863.t1 AT3G24120 52.066 121 46 4 4 112 67 187 1.15e-29 112
MS.gene41863.t1 AT5G18240 50.820 122 44 3 4 112 71 189 1.74e-28 110
MS.gene41863.t1 AT2G20400 54.206 107 46 2 4 110 257 360 2.40e-28 110
MS.gene41863.t1 AT3G04030 50.435 115 45 2 10 112 1 115 2.71e-28 108
MS.gene41863.t1 AT1G79430 53.535 99 46 0 10 108 1 99 1.07e-27 106
MS.gene41863.t1 AT2G20400 53.271 107 48 1 4 110 257 361 1.09e-27 108
MS.gene41863.t1 AT5G18240 49.180 122 42 3 4 112 71 185 2.94e-26 104
MS.gene41863.t1 AT5G18240 49.180 122 42 3 4 112 71 185 2.94e-26 104
MS.gene41863.t1 AT3G04030 47.934 121 45 3 4 112 71 185 8.58e-26 103
MS.gene41863.t1 AT5G18240 48.739 119 40 4 10 114 1 112 1.94e-23 95.9
MS.gene41863.t1 AT5G45580 42.969 128 50 3 4 112 33 156 2.53e-23 94.4
MS.gene41863.t1 AT5G45580 42.520 127 52 2 4 112 49 172 4.29e-23 94.0
MS.gene41863.t1 AT3G04030 46.957 115 43 3 10 112 1 109 6.41e-23 94.4
MS.gene41863.t1 AT3G12730 41.441 111 60 2 4 109 49 159 7.97e-21 87.0
MS.gene41863.t1 AT3G12730 40.000 105 58 2 10 109 1 105 8.19e-18 77.8
MS.gene41863.t1 AT5G06800 72.222 36 10 0 4 39 218 253 2.60e-11 62.0
MS.gene41863.t1 AT5G29000 72.222 36 10 0 4 39 257 292 2.77e-11 62.0
MS.gene41863.t1 AT3G04450 71.429 35 10 0 4 38 264 298 3.58e-11 61.6

Find 52 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCTGGAGACAGCATTTC+TGG 0.169125 7.3:+21305671 MS.gene41863:CDS
CAGCCCCTACCAGAGCCTTC+TGG 0.269622 7.3:+21306776 MS.gene41863:CDS
TCATGTTAAAAGCCATTTAC+AGG 0.288705 7.3:+21305371 MS.gene41863:CDS
TTACCATCACCTGGTGATTC+AGG 0.291103 7.3:-21305519 None:intergenic
GGGTCTAGTGATGCCCTTGC+AGG 0.311416 7.3:+21306797 MS.gene41863:CDS
AAAGATGAGAAAAGGAATTC+TGG 0.312253 7.3:+21305656 MS.gene41863:CDS
CACATATTGATACCTGTAAA+TGG 0.320680 7.3:-21305383 None:intergenic
TGCTGGCTATGGATTTGATT+TGG 0.352915 7.3:+21306958 MS.gene41863:CDS
GCATCATCTTCATACAAGTT+TGG 0.368079 7.3:-21306938 None:intergenic
GAGCAGTCTTTCTTGTAACT+TGG 0.380002 7.3:-21306883 None:intergenic
TGATTGTAATGTTGGTCCTT+TGG 0.407688 7.3:+21306913 MS.gene41863:CDS
CTGAGAGTGATGGGTGTGCC+TGG 0.409297 7.3:+21305336 MS.gene41863:CDS
AGCCCCTACCAGAGCCTTCT+GGG 0.416882 7.3:+21306777 MS.gene41863:CDS
ATCACTCTCAGAACACCTTT+CGG 0.429121 7.3:-21305324 None:intergenic
AACTTTAAATTATTCATGAT+AGG 0.430793 7.3:+21305294 None:intergenic
AGCAGTCTTTCTTGTAACTT+GGG 0.448297 7.3:-21306882 None:intergenic
CAGAAGGCTCTGGTAGGGGC+TGG 0.470415 7.3:-21306775 None:intergenic
CAGATTCTAAAGATGAGAAA+AGG 0.474395 7.3:+21305648 MS.gene41863:intron
CTTCTGCAAGTATTTACCCT+GGG 0.483213 7.3:-21306675 None:intergenic
TATGAAGATGATGCTGGCTA+TGG 0.495754 7.3:+21306947 MS.gene41863:CDS
TCACTAGACCCAGAAGGCTC+TGG 0.511074 7.3:-21306785 None:intergenic
GACCCAGAAGGCTCTGGTAG+GGG 0.525816 7.3:-21306779 None:intergenic
GAGAATTGATGAAGGTTCAA+AGG 0.527042 7.3:+21306844 MS.gene41863:CDS
AGGTAGTACCTTGGCAGCAT+CGG 0.527216 7.3:+21306721 MS.gene41863:CDS
CAGAAGAATGATTGTAATGT+TGG 0.531455 7.3:+21306905 MS.gene41863:CDS
ACAAATGAGAATTGAAGCCC+AGG 0.536357 7.3:+21306658 MS.gene41863:CDS
ATAGAGGAACAGCAGAAACT+AGG 0.544970 7.3:+21306701 MS.gene41863:CDS
AGACCCAGAAGGCTCTGGTA+GGG 0.545203 7.3:-21306780 None:intergenic
ATTGATGAAGGTTCAAAGGA+TGG 0.546371 7.3:+21306848 MS.gene41863:CDS
ATTCAGGCAAGTACTTCGCC+AGG 0.553148 7.3:-21305503 None:intergenic
CTACATGTAGAAGTATCGCC+TGG 0.558759 7.3:+21305485 MS.gene41863:intron
AAGTGTTTCCGATGCTGCCA+AGG 0.559809 7.3:-21306729 None:intergenic
ACGTCTGCATGAACAGCTTG+AGG 0.563571 7.3:+21305852 MS.gene41863:CDS
GAATCACCAGGTGATGGTAA+AGG 0.568026 7.3:+21305522 MS.gene41863:CDS
TCATACAAGTTTGGATCCAA+AGG 0.570266 7.3:-21306929 None:intergenic
AAGTACTTGCCTGAATCACC+AGG 0.571352 7.3:+21305510 MS.gene41863:CDS
ACATGATAAATGGTCAGTCC+AGG 0.573039 7.3:-21305354 None:intergenic
TGACGCACTACGAATGCAGA+TGG 0.592958 7.3:+21305819 MS.gene41863:CDS
TAGACCCAGAAGGCTCTGGT+AGG 0.597328 7.3:-21306781 None:intergenic
ATGATAGGAGCAACACCGAA+AGG 0.616255 7.3:+21305309 MS.gene41863:CDS
TTGCCTGAATCACCAGGTGA+TGG 0.621799 7.3:+21305516 MS.gene41863:CDS
AACTTGTATGAAGATGATGC+TGG 0.625161 7.3:+21306941 MS.gene41863:CDS
AAAGGTGTTCTGAGAGTGAT+GGG 0.625965 7.3:+21305327 MS.gene41863:CDS
CGCACTACGAATGCAGATGG+AGG 0.637116 7.3:+21305822 MS.gene41863:CDS
GAAAGGTGTTCTGAGAGTGA+TGG 0.640082 7.3:+21305326 MS.gene41863:CDS
TCTTCTGCAAGTATTTACCC+TGG 0.641154 7.3:-21306676 None:intergenic
GCAGAAACTAGGTAGTACCT+TGG 0.646490 7.3:+21306712 MS.gene41863:CDS
AAGGCACCTTTACCATCACC+TGG 0.649278 7.3:-21305528 None:intergenic
CAAATGAGAATTGAAGCCCA+GGG 0.650033 7.3:+21306659 MS.gene41863:CDS
AGGGCATCACTAGACCCAGA+AGG 0.683087 7.3:-21306791 None:intergenic
ATACTTGCAGAAGATCATAG+AGG 0.704943 7.3:+21306685 MS.gene41863:CDS
TTGGAAACAGAAAATGACGA+CGG 0.712157 7.3:+21306977 MS.gene41863:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATATTTTACTAATTTTACA+TGG + chr7.3:21305435-21305454 MS.gene41863:intron 10.0%
!! AAGAATTATATAAAAATTGC+AGG - chr7.3:21306374-21306393 None:intergenic 15.0%
!!! ATATAATTCTTTTAAATACG+TGG + chr7.3:21306383-21306402 MS.gene41863:intron 15.0%
!!! TTGTTTTATTAAAATGTTAG+AGG - chr7.3:21305771-21305790 None:intergenic 15.0%
!! ATGATAAATAAAAGATGGTT+GGG - chr7.3:21306048-21306067 None:intergenic 20.0%
!! ATTTAAGTGTGATAATAAGA+TGG + chr7.3:21306529-21306548 MS.gene41863:intron 20.0%
!! CTATGCTATTAGTATAAATA+AGG + chr7.3:21305887-21305906 MS.gene41863:intron 20.0%
!! CTTATTTAATAGATAAGTGA+TGG - chr7.3:21306457-21306476 None:intergenic 20.0%
!! TACATGTAGTGATATATAAT+AGG - chr7.3:21305474-21305493 None:intergenic 20.0%
!! TATAATTCTTCATTATCAGA+AGG - chr7.3:21306480-21306499 None:intergenic 20.0%
!! TTAATCATTGTTGAAGTTAT+GGG - chr7.3:21306011-21306030 None:intergenic 20.0%
!! TTTAATCATTGTTGAAGTTA+TGG - chr7.3:21306012-21306031 None:intergenic 20.0%
!!! AGAAACATTTGAAGTTTTTA+CGG - chr7.3:21306223-21306242 None:intergenic 20.0%
!!! ATCAATTCTCTGTTTTTTAT+GGG - chr7.3:21306834-21306853 None:intergenic 20.0%
!!! TGTAGTTTCATCTAAAATAA+TGG - chr7.3:21306316-21306335 None:intergenic 20.0%
! AAAAAACAGAGAATTGATGA+AGG + chr7.3:21306836-21306855 MS.gene41863:CDS 25.0%
! AAGGAGTTACAAATTATCTT+CGG - chr7.3:21305732-21305751 None:intergenic 25.0%
! ACTTCAACAATGATTAAACT+TGG + chr7.3:21306014-21306033 MS.gene41863:intron 25.0%
! ATGGTTCAACTATTAATTTC+AGG + chr7.3:21306273-21306292 MS.gene41863:intron 25.0%
! CACAGATGATAAATAAAAGA+TGG - chr7.3:21306053-21306072 None:intergenic 25.0%
! GATGATAAATAAAAGATGGT+TGG - chr7.3:21306049-21306068 None:intergenic 25.0%
! TAAGAGAAAAATGAAGACTA+TGG - chr7.3:21305981-21306000 None:intergenic 25.0%
! TATTAAAATGTTAGAGGTAG+AGG - chr7.3:21305765-21305784 None:intergenic 25.0%
! TGCTATTAGTATAAATAAGG+AGG + chr7.3:21305890-21305909 MS.gene41863:intron 25.0%
! TTTATACTAATAGCATAGCT+AGG - chr7.3:21305885-21305904 None:intergenic 25.0%
!! AATTAGCTTCTAATTTACCT+CGG + chr7.3:21306499-21306518 MS.gene41863:intron 25.0%
!! ATGGCTTTTAACATGATAAA+TGG - chr7.3:21305367-21305386 None:intergenic 25.0%
!! GACATTTCTCATAACTTTTT+AGG - chr7.3:21305577-21305596 None:intergenic 25.0%
!!! CATCAATTCTCTGTTTTTTA+TGG - chr7.3:21306835-21306854 None:intergenic 25.0%
!!! TCAATTCTCTGTTTTTTATG+GGG - chr7.3:21306833-21306852 None:intergenic 25.0%
!!! TTTCAGGTTAAATTTCTTCA+CGG + chr7.3:21306289-21306308 MS.gene41863:intron 25.0%
AAAGATGAGAAAAGGAATTC+TGG + chr7.3:21305656-21305675 MS.gene41863:CDS 30.0%
AAGAGCGATCATTACATTAA+TGG + chr7.3:21306254-21306273 MS.gene41863:intron 30.0%
ATATCAAGGAAGTAAATGCA+CGG - chr7.3:21306619-21306638 None:intergenic 30.0%
ATTTACTTCCTTGATATTCC+AGG + chr7.3:21306622-21306641 MS.gene41863:intron 30.0%
CACATATTGATACCTGTAAA+TGG - chr7.3:21305386-21305405 None:intergenic 30.0%
CAGAAGAATGATTGTAATGT+TGG + chr7.3:21306905-21306924 MS.gene41863:CDS 30.0%
CATTTACAGGTATCAATATG+TGG + chr7.3:21305384-21305403 MS.gene41863:intron 30.0%
TAACTGATTAAGCATCCATA+TGG + chr7.3:21306164-21306183 MS.gene41863:intron 30.0%
TCATGTTAAAAGCCATTTAC+AGG + chr7.3:21305371-21305390 MS.gene41863:CDS 30.0%
! CAGATTCTAAAGATGAGAAA+AGG + chr7.3:21305648-21305667 MS.gene41863:intron 30.0%
!! TTTGTAATTGCTTTTGAACC+TGG - chr7.3:21306643-21306662 None:intergenic 30.0%
AACTTGTATGAAGATGATGC+TGG + chr7.3:21306941-21306960 MS.gene41863:CDS 35.0%
AGCAGTCTTTCTTGTAACTT+GGG - chr7.3:21306885-21306904 None:intergenic 35.0%
ATACTTGCAGAAGATCATAG+AGG + chr7.3:21306685-21306704 MS.gene41863:CDS 35.0%
ATTGATGAAGGTTCAAAGGA+TGG + chr7.3:21306848-21306867 MS.gene41863:CDS 35.0%
GAGAATTGATGAAGGTTCAA+AGG + chr7.3:21306844-21306863 MS.gene41863:CDS 35.0%
GCATCATCTTCATACAAGTT+TGG - chr7.3:21306941-21306960 None:intergenic 35.0%
TATCACTCAAATCAGCCATA+TGG - chr7.3:21306182-21306201 None:intergenic 35.0%
TCATACAAGTTTGGATCCAA+AGG - chr7.3:21306932-21306951 None:intergenic 35.0%
TGATTGTAATGTTGGTCCTT+TGG + chr7.3:21306913-21306932 MS.gene41863:CDS 35.0%
TTGGAAACAGAAAATGACGA+CGG + chr7.3:21306977-21306996 MS.gene41863:CDS 35.0%
! CTTTTGAACCTGGAATATCA+AGG - chr7.3:21306633-21306652 None:intergenic 35.0%
!!! CAGTTGACTCAGTTCTTTTT+TGG + chr7.3:21305620-21305639 MS.gene41863:intron 35.0%
AAAACAACTAAGACACCCAC+GGG - chr7.3:21305709-21305728 None:intergenic 40.0%
ACAAATGAGAATTGAAGCCC+AGG + chr7.3:21306658-21306677 MS.gene41863:CDS 40.0%
ACATGATAAATGGTCAGTCC+AGG - chr7.3:21305357-21305376 None:intergenic 40.0%
ACGAAGCGCAAGAAAAAACA+AGG - chr7.3:21305550-21305569 None:intergenic 40.0%
ATAGAGGAACAGCAGAAACT+AGG + chr7.3:21306701-21306720 MS.gene41863:CDS 40.0%
ATCACTCTCAGAACACCTTT+CGG - chr7.3:21305327-21305346 None:intergenic 40.0%
CAAATGAGAATTGAAGCCCA+GGG + chr7.3:21306659-21306678 MS.gene41863:CDS 40.0%
CTTCTATGAGTGAGCATTTC+TGG + chr7.3:21306582-21306601 MS.gene41863:intron 40.0%
CTTCTGCAAGTATTTACCCT+GGG - chr7.3:21306678-21306697 None:intergenic 40.0%
GAAAACAACTAAGACACCCA+CGG - chr7.3:21305710-21305729 None:intergenic 40.0%
GAGCAGTCTTTCTTGTAACT+TGG - chr7.3:21306886-21306905 None:intergenic 40.0%
TCTTCTGCAAGTATTTACCC+TGG - chr7.3:21306679-21306698 None:intergenic 40.0%
TTCTAATTTACCTCGGACTC+AGG + chr7.3:21306506-21306525 MS.gene41863:intron 40.0%
! AATTCTGGAGACAGCATTTC+TGG + chr7.3:21305671-21305690 MS.gene41863:CDS 40.0%
! TATGAAGATGATGCTGGCTA+TGG + chr7.3:21306947-21306966 MS.gene41863:CDS 40.0%
! TGCTGGCTATGGATTTGATT+TGG + chr7.3:21306958-21306977 MS.gene41863:CDS 40.0%
! TTTTGCTTATCATGGGACAG+CGG - chr7.3:21306755-21306774 None:intergenic 40.0%
!! AAAGGTGTTCTGAGAGTGAT+GGG + chr7.3:21305327-21305346 MS.gene41863:CDS 40.0%
!! AGATAAGTGATGGATTACCC+AGG - chr7.3:21306447-21306466 None:intergenic 40.0%
!! TGAGTGAGCATTTCTGGTAA+TGG + chr7.3:21306588-21306607 MS.gene41863:intron 40.0%
AAACAACTAAGACACCCACG+GGG - chr7.3:21305708-21305727 None:intergenic 45.0%
AAGTACTTGCCTGAATCACC+AGG + chr7.3:21305510-21305529 MS.gene41863:CDS 45.0%
ACACTTAAATCCTGAGTCCG+AGG - chr7.3:21306519-21306538 None:intergenic 45.0%
AGTCATGCATCTTGTGTCCT+GGG + chr7.3:21306427-21306446 MS.gene41863:intron 45.0%
ATAAAACAATCGTGCCCTGC+AGG + chr7.3:21305782-21305801 MS.gene41863:intron 45.0%
ATGATAGGAGCAACACCGAA+AGG + chr7.3:21305309-21305328 MS.gene41863:CDS 45.0%
GCAGAAACTAGGTAGTACCT+TGG + chr7.3:21306712-21306731 MS.gene41863:CDS 45.0%
TAAAACAATCGTGCCCTGCA+GGG + chr7.3:21305783-21305802 MS.gene41863:intron 45.0%
TTACCATCACCTGGTGATTC+AGG - chr7.3:21305522-21305541 None:intergenic 45.0%
! GAATCACCAGGTGATGGTAA+AGG + chr7.3:21305522-21305541 MS.gene41863:CDS 45.0%
!! ATTGATTTGCAATCCCCTGC+AGG - chr7.3:21305800-21305819 None:intergenic 45.0%
!! CTACATGTAGAAGTATCGCC+TGG + chr7.3:21305485-21305504 MS.gene41863:intron 45.0%
!! GAAAGGTGTTCTGAGAGTGA+TGG + chr7.3:21305326-21305345 MS.gene41863:CDS 45.0%
!! TTGATTTGCAATCCCCTGCA+GGG - chr7.3:21305799-21305818 None:intergenic 45.0%
!!! GGGCTGGTTTTGCTTATCAT+GGG - chr7.3:21306762-21306781 None:intergenic 45.0%
AAAACAATCGTGCCCTGCAG+GGG + chr7.3:21305784-21305803 MS.gene41863:intron 50.0%
AAGTGTTTCCGATGCTGCCA+AGG - chr7.3:21306732-21306751 None:intergenic 50.0%
ACGTCTGCATGAACAGCTTG+AGG + chr7.3:21305852-21305871 MS.gene41863:CDS 50.0%
AGGTAGTACCTTGGCAGCAT+CGG + chr7.3:21306721-21306740 MS.gene41863:CDS 50.0%
ATTCAGGCAAGTACTTCGCC+AGG - chr7.3:21305506-21305525 None:intergenic 50.0%
GAGTCATGCATCTTGTGTCC+TGG + chr7.3:21306426-21306445 MS.gene41863:intron 50.0%
TGACGCACTACGAATGCAGA+TGG + chr7.3:21305819-21305838 MS.gene41863:CDS 50.0%
TTGCCTGAATCACCAGGTGA+TGG + chr7.3:21305516-21305535 MS.gene41863:CDS 50.0%
! AAGGCACCTTTACCATCACC+TGG - chr7.3:21305531-21305550 None:intergenic 50.0%
!! AGGTAGAGGCGTCAAAGTGA+AGG - chr7.3:21305751-21305770 None:intergenic 50.0%
!! GGGAGAAAAAGTGCCTGCAA+GGG - chr7.3:21306813-21306832 None:intergenic 50.0%
!!! GGGGCTGGTTTTGCTTATCA+TGG - chr7.3:21306763-21306782 None:intergenic 50.0%
CGCACTACGAATGCAGATGG+AGG + chr7.3:21305822-21305841 MS.gene41863:CDS 55.0%
TCACTAGACCCAGAAGGCTC+TGG - chr7.3:21306788-21306807 None:intergenic 55.0%
! AGACCCAGAAGGCTCTGGTA+GGG - chr7.3:21306783-21306802 None:intergenic 55.0%
! AGGGCATCACTAGACCCAGA+AGG - chr7.3:21306794-21306813 None:intergenic 55.0%
! TAGACCCAGAAGGCTCTGGT+AGG - chr7.3:21306784-21306803 None:intergenic 55.0%
!! GGGGAGAAAAAGTGCCTGCA+AGG - chr7.3:21306814-21306833 None:intergenic 55.0%
AGCCCCTACCAGAGCCTTCT+GGG + chr7.3:21306777-21306796 MS.gene41863:CDS 60.0%
GGGTCTAGTGATGCCCTTGC+AGG + chr7.3:21306797-21306816 MS.gene41863:CDS 60.0%
! GACCCAGAAGGCTCTGGTAG+GGG - chr7.3:21306782-21306801 None:intergenic 60.0%
!! CTGAGAGTGATGGGTGTGCC+TGG + chr7.3:21305336-21305355 MS.gene41863:CDS 60.0%
!! TGGCGCTGATTCTTCCCCGT+GGG + chr7.3:21305691-21305710 MS.gene41863:intron 60.0%
CAGCCCCTACCAGAGCCTTC+TGG + chr7.3:21306776-21306795 MS.gene41863:CDS 65.0%
! CAGAAGGCTCTGGTAGGGGC+TGG - chr7.3:21306778-21306797 None:intergenic 65.0%
!! CTGGCGCTGATTCTTCCCCG+TGG + chr7.3:21305690-21305709 MS.gene41863:intron 65.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 21305309 21307014 21305309 ID=MS.gene41863
chr7.3 mRNA 21305309 21307014 21305309 ID=MS.gene41863.t1;Parent=MS.gene41863
chr7.3 exon 21305309 21305392 21305309 ID=MS.gene41863.t1.exon1;Parent=MS.gene41863.t1
chr7.3 CDS 21305309 21305392 21305309 ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1
chr7.3 exon 21305495 21305543 21305495 ID=MS.gene41863.t1.exon2;Parent=MS.gene41863.t1
chr7.3 CDS 21305495 21305543 21305495 ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1
chr7.3 exon 21305651 21305708 21305651 ID=MS.gene41863.t1.exon3;Parent=MS.gene41863.t1
chr7.3 CDS 21305651 21305708 21305651 ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1
chr7.3 exon 21305804 21305873 21305804 ID=MS.gene41863.t1.exon4;Parent=MS.gene41863.t1
chr7.3 CDS 21305804 21305873 21305804 ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1
chr7.3 exon 21306644 21307014 21306644 ID=MS.gene41863.t1.exon5;Parent=MS.gene41863.t1
chr7.3 CDS 21306644 21307014 21306644 ID=cds.MS.gene41863.t1;Parent=MS.gene41863.t1
Gene Sequence

>MS.gene41863

ATGATAGGAGCAACACCGAAAGGTGTTCTGAGAGTGATGGGTGTGCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGGTATCAATATGTGGTCTAATTATTCTTTTGTGTATGTGCTACAATATTTTACTAATTTTACATGGATTCTAATTTTTTCCTATTATATATCACTACATGTAGAAGTATCGCCTGGCGAAGTACTTGCCTGAATCACCAGGTGATGGTAAAGGTGCCTTGTTTTTTCTTGCGCTTCGTAGTTCCTAAAAAGTTATGAGAAATGTCATGCTGTTTTGATTTCACATTTTCAGTTGACTCAGTTCTTTTTTGGACTTTCAGATTCTAAAGATGAGAAAAGGAATTCTGGAGACAGCATTTCTGGCGCTGATTCTTCCCCGTGGGTGTCTTAGTTGTTTTCCGAAGATAATTTGTAACTCCTTCACTTTGACGCCTCTACCTCTAACATTTTAATAAAACAATCGTGCCCTGCAGGGGATTGCAAATCAATGACGCACTACGAATGCAGATGGAGGTTCAAAAACGTCTGCATGAACAGCTTGAGGTTTGTTACCTAGCTATGCTATTAGTATAAATAAGGAGGATTAGTGTTTACTCTTTGTGTATCAAATAAATCATAATCATCAATCATATCTATTAGTTAACAATCCATAGTCTTCATTTTTCTCTTATGTAAAACCCATAACTTCAACAATGATTAAACTTGGATGCTATGCCCAACCATCTTTTATTTATCATCTGTGAGTGTTAACTAATAGTTAAAACATGAGTCATTTTTCATTTTGTTTATTGATATAAATTACAACTTGTTTGTTGCATGTAACTTGAAGAAAATAACTGATTAAGCATCCATATGGCTGATTTGAGTGATAGATTTAAGTTTTAACTTACCGTAAAAACTTCAAATGTTTCTATTGTAATTTGAAGAGCGATCATTACATTAATGGTTCAACTATTAATTTCAGGTTAAATTTCTTCACGGACCATTATTTTAGATGAAACTACATTGCAATTGAACAGAAGTGCTTAACAATTTTTTTGCCTGCAATTTTTATATAATTCTTTTAAATACGTGGATTGTGTCTGTTTGATCTGAGAGTCATGCATCTTGTGTCCTGGGTAATCCATCACTTATCTATTAAATAAGCCTTCTGATAATGAAGAATTATAATTAGCTTCTAATTTACCTCGGACTCAGGATTTAAGTGTGATAATAAGATGGTTACTGTTTGTTCAATTTTATAGTATTGTGCTTCTATGAGTGAGCATTTCTGGTAATGGTAAAGCCGTGCATTTACTTCCTTGATATTCCAGGTTCAAAAGCAATTACAAATGAGAATTGAAGCCCAGGGTAAATACTTGCAGAAGATCATAGAGGAACAGCAGAAACTAGGTAGTACCTTGGCAGCATCGGAAACACTTCCGCTGTCCCATGATAAGCAAAACCAGCCCCTACCAGAGCCTTCTGGGTCTAGTGATGCCCTTGCAGGCACTTTTTCTCCCCATAAAAAACAGAGAATTGATGAAGGTTCAAAGGATGGCTTCACTGCATCCCAAGTTACAAGAAAGACTGCTCAGAAGAATGATTGTAATGTTGGTCCTTTGGATCCAAACTTGTATGAAGATGATGCTGGCTATGGATTTGATTTGGAAACAGAAAATGACGACGGCAATGAGAGTGAGCA
Protein sequence

>MS.gene41863.t1

MIGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPGDGKDSKDEKRNSGDSISGADSSPGLQINDALRMQMEVQKRLHEQLEVQKQLQMRIEAQGKYLQKIIEEQQKLGSTLAASETLPLSHDKQNQPLPEPSGSSDALAGTFSPHKKQRIDEGSKDGFTASQVTRKTAQKNDCNVGPLDPNLYEDDAGYGFDLETENDDGNESE