AlfalfaGEDB | MS.gene41904

M. sativa cultivar XinJiangDaYe / MS.gene41904

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41904.t1	XP_030926070.1	93.5	46	3	0	1	46	15	60	8.10E-17	95.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41904.t1	Q9SJW0	87.8	41	5	0	4	44	41	81	3.2e-14	78.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41904.t1	A0A392QNK0	96.2	52	2	0	4	55	1	52	5.7e-20	105.5

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene41904.t1	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41904.t1	MTR_7g088070	100.000	41	0	0	4	44	76	116	8.41e-24	89.7
MS.gene41904.t1	MTR_7g088070	100.000	37	0	0	4	40	76	112	1.33e-20	81.3
MS.gene41904.t1	MTR_2g027860	87.179	39	5	0	4	42	75	113	3.84e-17	72.8
MS.gene41904.t1	MTR_7g115530	81.081	37	7	0	4	40	244	280	1.26e-15	68.2
MS.gene41904.t1	MTR_7g115530	81.081	37	7	0	4	40	244	280	1.47e-15	68.2
MS.gene41904.t1	MTR_7g115530	81.081	37	7	0	4	40	244	280	1.62e-15	68.2
MS.gene41904.t1	MTR_7g115530	81.081	37	7	0	4	40	244	280	1.86e-15	68.2
MS.gene41904.t1	MTR_7g098250	73.810	42	10	1	4	45	288	328	1.04e-14	66.2
MS.gene41904.t1	MTR_1g053835	70.732	41	11	1	4	44	284	323	1.69e-14	65.5
MS.gene41904.t1	MTR_1g080330	80.556	36	7	0	4	39	201	236	2.29e-14	64.7

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene41904.t1	AT2G01060	87.805	41	5	4	44	41	81	1.05e-18	76.6
MS.gene41904.t1	AT4G28610	72.500	40	11	4	43	251	290	2.09e-14	65.5
MS.gene41904.t1	AT3G13040	80.000	35	7	4	38	267	301	3.56e-14	64.7
MS.gene41904.t1	AT3G13040	80.000	35	7	4	38	267	301	3.56e-14	64.7
MS.gene41904.t1	AT3G13040	80.000	35	7	4	38	267	301	3.56e-14	64.7
MS.gene41904.t1	AT5G29000	72.222	36	10	4	39	214	249	2.44e-13	62.4
MS.gene41904.t1	AT5G29000	72.222	36	10	4	39	214	249	2.44e-13	62.4
MS.gene41904.t1	AT5G29000	72.222	36	10	4	39	257	292	2.52e-13	62.4
MS.gene41904.t1	AT5G29000	72.222	36	10	4	39	257	292	2.65e-13	62.0
MS.gene41904.t1	AT5G06800	72.222	36	10	4	39	218	253	2.82e-13	61.6

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Find 16 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGTGTTCTGAGAGTGAT+GGG	0.625965	7.4:+20244330	MS.gene41904:CDS
AACTTTAAATTATTCATGAT+AGG	0.430793	7.4:+20244297	None:intergenic
AAGGCACCTTTACCATCACC+TGG	0.649278	7.4:-20244531	None:intergenic
AAGTACTTGCCTGAATCACC+AGG	0.571352	7.4:+20244513	MS.gene41904:CDS
ACATGATAAATGGTCAGTCC+AGG	0.573039	7.4:-20244357	None:intergenic
ATCACTCTCAGAACACCTTT+CGG	0.429121	7.4:-20244327	None:intergenic
ATGATAGGAGCAACACCGAA+AGG	0.616255	7.4:+20244312	MS.gene41904:CDS
ATTCAGGCAAGTACTTCGCC+AGG	0.553148	7.4:-20244506	None:intergenic
CACATATTGATACCTGTAAA+TGG	0.320680	7.4:-20244386	None:intergenic
CTACATGTAGAAGTATCGCC+TGG	0.558759	7.4:+20244488	MS.gene41904:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CACATATTGATACCTGTAAA+TGG	-	chr7.4:20244389-20244408	None:intergenic	30.0%
CATTTACAGGTATCAATATG+TGG	+	chr7.4:20244387-20244406	MS.gene41904:intron	30.0%
TCATGTTAAAAGCCATTTAC+AGG	+	chr7.4:20244374-20244393	MS.gene41904:CDS	30.0%
ACATGATAAATGGTCAGTCC+AGG	-	chr7.4:20244360-20244379	None:intergenic	40.0%
ACGAAGCGCAAGAAAAAACA+AGG	-	chr7.4:20244553-20244572	None:intergenic	40.0%
ATCACTCTCAGAACACCTTT+CGG	-	chr7.4:20244330-20244349	None:intergenic	40.0%
AAGTACTTGCCTGAATCACC+AGG	+	chr7.4:20244513-20244532	MS.gene41904:CDS	45.0%
ATGATAGGAGCAACACCGAA+AGG	+	chr7.4:20244312-20244331	MS.gene41904:CDS	45.0%
TTACCATCACCTGGTGATTC+AGG	-	chr7.4:20244525-20244544	None:intergenic	45.0%
ATTCAGGCAAGTACTTCGCC+AGG	-	chr7.4:20244509-20244528	None:intergenic	50.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	20244312	20244581	20244312	ID=MS.gene41904
chr7.4	mRNA	20244312	20244581	20244312	ID=MS.gene41904.t1;Parent=MS.gene41904
chr7.4	exon	20244312	20244395	20244312	ID=MS.gene41904.t1.exon1;Parent=MS.gene41904.t1
chr7.4	CDS	20244312	20244395	20244312	ID=cds.MS.gene41904.t1;Parent=MS.gene41904.t1
chr7.4	exon	20244498	20244581	20244498	ID=MS.gene41904.t1.exon2;Parent=MS.gene41904.t1
chr7.4	CDS	20244498	20244581	20244498	ID=cds.MS.gene41904.t1;Parent=MS.gene41904.t1

Gene Sequence	>MS.gene41904 ATGATAGGAGCAACACCGAAAGGTGTTCTGAGAGTGATGGGTGTGCCTGGACTGACCATTTATCATGTTAAAAGCCATTTACAGGTATCAATATGTGGTCTAATTATTCTTTTGTGTATGTGCTACAATATTTTACTAATTTTACATGGATTCTAATTTTTTCCTATTATATATCACTACATGTAGAAGTATCGCCTGGCGAAGTACTTGCCTGAATCACCAGGTGATGGTAAAGGTGCCTTGTTTTTTCTTGCGCTTCGTAGTTCCTAA
Protein sequence	>MS.gene41904.t1 MIGATPKGVLRVMGVPGLTIYHVKSHLQKYRLAKYLPESPGDGKGALFFLALRSS