Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41919.t1 | XP_013452170.1 | 83.6 | 348 | 31 | 3 | 1 | 336 | 1 | 334 | 1.20E-147 | 532.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41919.t1 | Q9T072 | 39.5 | 238 | 118 | 7 | 105 | 336 | 111 | 328 | 8.0e-31 | 136.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41919.t1 | A0A072UAR9 | 83.6 | 348 | 31 | 3 | 1 | 336 | 1 | 334 | 8.8e-148 | 532.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene41919.t1 | TF | bHLH |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41919.t1 | MTR_6g047570 | 83.621 | 348 | 31 | 3 | 1 | 336 | 1 | 334 | 0.0 | 574 |
MS.gene41919.t1 | MTR_0011s0260 | 66.391 | 363 | 90 | 5 | 1 | 336 | 1 | 358 | 4.44e-154 | 436 |
MS.gene41919.t1 | MTR_0011s0210 | 65.565 | 363 | 93 | 5 | 1 | 336 | 1 | 358 | 6.19e-151 | 429 |
MS.gene41919.t1 | MTR_6g047550 | 82.677 | 254 | 27 | 4 | 1 | 239 | 1 | 252 | 4.24e-139 | 395 |
MS.gene41919.t1 | MTR_4g067010 | 62.428 | 346 | 93 | 7 | 1 | 336 | 1 | 319 | 6.11e-137 | 392 |
MS.gene41919.t1 | MTR_4g066380 | 63.352 | 352 | 85 | 7 | 1 | 336 | 1 | 324 | 5.87e-133 | 382 |
MS.gene41919.t1 | MTR_4g066460 | 60.548 | 365 | 75 | 7 | 1 | 335 | 1 | 326 | 1.51e-132 | 381 |
MS.gene41919.t1 | MTR_0250s0040 | 62.264 | 318 | 61 | 5 | 23 | 336 | 1 | 263 | 6.86e-128 | 367 |
MS.gene41919.t1 | MTR_0246s0020 | 56.736 | 386 | 108 | 7 | 1 | 336 | 1 | 377 | 1.92e-125 | 365 |
MS.gene41919.t1 | MTR_4g098035 | 54.131 | 351 | 135 | 11 | 1 | 336 | 1 | 340 | 1.44e-112 | 330 |
MS.gene41919.t1 | MTR_0246s0020 | 53.684 | 380 | 115 | 8 | 1 | 330 | 1 | 369 | 4.35e-110 | 325 |
MS.gene41919.t1 | MTR_0246s0050 | 53.191 | 329 | 129 | 10 | 22 | 336 | 2 | 319 | 2.45e-103 | 306 |
MS.gene41919.t1 | MTR_5g014520 | 43.636 | 330 | 159 | 11 | 17 | 336 | 20 | 332 | 9.26e-63 | 203 |
MS.gene41919.t1 | MTR_5g014560 | 42.056 | 321 | 127 | 10 | 25 | 336 | 36 | 306 | 2.13e-62 | 201 |
MS.gene41919.t1 | MTR_4g009540 | 41.667 | 240 | 122 | 5 | 111 | 334 | 94 | 331 | 8.88e-52 | 174 |
MS.gene41919.t1 | MTR_5g014600 | 35.180 | 361 | 171 | 12 | 8 | 333 | 2 | 334 | 4.94e-48 | 164 |
MS.gene41919.t1 | MTR_2g010450 | 44.500 | 200 | 96 | 4 | 145 | 336 | 161 | 353 | 1.45e-45 | 159 |
MS.gene41919.t1 | MTR_4g097920 | 44.444 | 171 | 91 | 2 | 159 | 328 | 138 | 305 | 1.69e-44 | 155 |
MS.gene41919.t1 | MTR_4g097920 | 44.444 | 171 | 91 | 2 | 159 | 328 | 153 | 320 | 2.39e-44 | 155 |
MS.gene41919.t1 | MTR_4g009540 | 41.553 | 219 | 110 | 5 | 111 | 313 | 94 | 310 | 2.86e-44 | 154 |
MS.gene41919.t1 | MTR_2g104490 | 43.137 | 204 | 107 | 5 | 131 | 328 | 102 | 302 | 9.12e-44 | 153 |
MS.gene41919.t1 | MTR_4g092700 | 42.857 | 217 | 111 | 4 | 126 | 336 | 124 | 333 | 1.80e-43 | 152 |
MS.gene41919.t1 | MTR_4g097940 | 44.444 | 171 | 91 | 3 | 159 | 328 | 153 | 320 | 6.79e-43 | 151 |
MS.gene41919.t1 | MTR_4g097950 | 46.939 | 196 | 89 | 5 | 151 | 335 | 60 | 251 | 2.27e-42 | 147 |
MS.gene41919.t1 | MTR_4g009110 | 36.992 | 246 | 129 | 6 | 111 | 334 | 109 | 350 | 2.30e-42 | 150 |
MS.gene41919.t1 | MTR_2g104550 | 42.661 | 218 | 111 | 8 | 127 | 333 | 97 | 311 | 1.36e-40 | 144 |
MS.gene41919.t1 | MTR_8g009020 | 36.287 | 237 | 126 | 6 | 116 | 329 | 84 | 318 | 8.15e-37 | 135 |
MS.gene41919.t1 | MTR_2g104490 | 42.328 | 189 | 100 | 5 | 131 | 313 | 102 | 287 | 1.27e-36 | 134 |
MS.gene41919.t1 | MTR_7g080780 | 37.354 | 257 | 139 | 8 | 84 | 329 | 66 | 311 | 7.40e-36 | 132 |
MS.gene41919.t1 | MTR_7g080780 | 37.354 | 257 | 139 | 8 | 84 | 329 | 79 | 324 | 7.65e-36 | 132 |
MS.gene41919.t1 | MTR_2g104560 | 33.755 | 237 | 137 | 6 | 107 | 335 | 2 | 226 | 6.23e-35 | 127 |
MS.gene41919.t1 | MTR_5g014640 | 40.230 | 174 | 101 | 2 | 156 | 329 | 149 | 319 | 7.02e-35 | 130 |
MS.gene41919.t1 | MTR_2g104650 | 37.615 | 218 | 119 | 6 | 124 | 332 | 58 | 267 | 3.83e-33 | 124 |
MS.gene41919.t1 | MTR_2g104530 | 38.095 | 168 | 100 | 1 | 162 | 329 | 106 | 269 | 1.60e-29 | 114 |
MS.gene41919.t1 | MTR_2g104500 | 35.371 | 229 | 130 | 5 | 117 | 334 | 51 | 272 | 3.36e-29 | 113 |
MS.gene41919.t1 | MTR_8g069740 | 38.333 | 180 | 98 | 4 | 141 | 312 | 91 | 265 | 4.46e-29 | 113 |
MS.gene41919.t1 | MTR_8g009010 | 39.181 | 171 | 67 | 3 | 160 | 329 | 133 | 267 | 5.75e-29 | 114 |
MS.gene41919.t1 | MTR_2g104590 | 37.853 | 177 | 82 | 6 | 161 | 332 | 69 | 222 | 3.14e-27 | 107 |
MS.gene41919.t1 | MTR_5g014550 | 46.032 | 126 | 60 | 3 | 191 | 312 | 54 | 175 | 2.40e-25 | 101 |
MS.gene41919.t1 | MTR_4g009420 | 34.839 | 155 | 69 | 2 | 184 | 331 | 65 | 194 | 1.40e-22 | 94.0 |
MS.gene41919.t1 | MTR_4g009510 | 32.927 | 164 | 92 | 5 | 172 | 331 | 53 | 202 | 1.45e-22 | 94.0 |
MS.gene41919.t1 | MTR_7g451650 | 37.162 | 148 | 83 | 4 | 184 | 331 | 57 | 194 | 4.17e-21 | 89.7 |
MS.gene41919.t1 | MTR_7g050350 | 33.557 | 149 | 75 | 4 | 190 | 331 | 1 | 132 | 3.70e-19 | 82.8 |
MS.gene41919.t1 | MTR_7g451650 | 33.557 | 149 | 75 | 4 | 190 | 331 | 1 | 132 | 3.70e-19 | 82.8 |
MS.gene41919.t1 | MTR_8g067280 | 33.333 | 150 | 85 | 3 | 161 | 297 | 462 | 609 | 1.19e-15 | 78.2 |
MS.gene41919.t1 | MTR_4g009420 | 33.577 | 137 | 59 | 2 | 184 | 313 | 65 | 176 | 8.02e-15 | 72.8 |
MS.gene41919.t1 | MTR_1g072320 | 30.811 | 185 | 105 | 6 | 161 | 328 | 470 | 648 | 8.28e-15 | 75.9 |
MS.gene41919.t1 | MTR_8g024790 | 30.872 | 149 | 82 | 7 | 154 | 290 | 284 | 423 | 6.25e-14 | 72.8 |
MS.gene41919.t1 | MTR_7g451650 | 36.154 | 130 | 73 | 4 | 184 | 313 | 57 | 176 | 6.48e-14 | 69.7 |
MS.gene41919.t1 | MTR_5g030430 | 29.947 | 187 | 91 | 6 | 139 | 297 | 466 | 640 | 1.26e-13 | 72.0 |
MS.gene41919.t1 | MTR_7g117670 | 29.221 | 154 | 101 | 2 | 161 | 314 | 402 | 547 | 3.60e-13 | 70.5 |
MS.gene41919.t1 | MTR_8g027495 | 50.000 | 64 | 32 | 0 | 161 | 224 | 458 | 521 | 8.08e-13 | 69.7 |
MS.gene41919.t1 | MTR_3g498695 | 24.876 | 201 | 141 | 2 | 134 | 324 | 271 | 471 | 1.02e-12 | 68.9 |
MS.gene41919.t1 | MTR_8g098275 | 40.000 | 80 | 48 | 0 | 145 | 224 | 292 | 371 | 2.20e-12 | 68.2 |
MS.gene41919.t1 | MTR_8g098275 | 40.000 | 80 | 48 | 0 | 145 | 224 | 385 | 464 | 2.35e-12 | 68.2 |
MS.gene41919.t1 | MTR_8g024770 | 29.054 | 148 | 86 | 4 | 137 | 270 | 250 | 392 | 2.36e-12 | 67.8 |
MS.gene41919.t1 | MTR_8g098275 | 40.000 | 80 | 48 | 0 | 145 | 224 | 228 | 307 | 2.51e-12 | 67.8 |
MS.gene41919.t1 | MTR_8g064700 | 23.188 | 207 | 136 | 5 | 117 | 310 | 202 | 398 | 3.13e-12 | 67.4 |
MS.gene41919.t1 | MTR_3g498695 | 24.876 | 201 | 140 | 3 | 134 | 324 | 271 | 470 | 6.89e-12 | 66.6 |
MS.gene41919.t1 | MTR_3g030700 | 29.677 | 155 | 104 | 2 | 163 | 312 | 198 | 352 | 1.22e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41919.t1 | AT4G37850 | 39.496 | 238 | 118 | 7 | 105 | 336 | 111 | 328 | 2.24e-42 | 150 |
MS.gene41919.t1 | AT4G37850 | 39.496 | 238 | 118 | 7 | 105 | 336 | 111 | 328 | 2.24e-42 | 150 |
MS.gene41919.t1 | AT2G22760 | 36.014 | 286 | 149 | 11 | 81 | 333 | 11 | 295 | 5.97e-42 | 147 |
MS.gene41919.t1 | AT2G22750 | 44.974 | 189 | 96 | 3 | 146 | 328 | 111 | 297 | 5.30e-37 | 135 |
MS.gene41919.t1 | AT2G22750 | 44.974 | 189 | 96 | 3 | 146 | 328 | 139 | 325 | 5.57e-37 | 135 |
MS.gene41919.t1 | AT2G22750 | 44.974 | 189 | 96 | 3 | 146 | 328 | 135 | 321 | 5.68e-37 | 135 |
MS.gene41919.t1 | AT2G22760 | 35.472 | 265 | 138 | 10 | 81 | 313 | 11 | 274 | 6.89e-36 | 131 |
MS.gene41919.t1 | AT2G22750 | 44.974 | 189 | 95 | 4 | 146 | 328 | 139 | 324 | 9.08e-36 | 132 |
MS.gene41919.t1 | AT2G22750 | 44.974 | 189 | 95 | 4 | 146 | 328 | 111 | 296 | 9.40e-36 | 132 |
MS.gene41919.t1 | AT2G22770 | 34.167 | 240 | 131 | 6 | 110 | 331 | 87 | 317 | 1.04e-32 | 124 |
MS.gene41919.t1 | AT5G46760 | 28.261 | 184 | 99 | 7 | 161 | 317 | 415 | 592 | 1.20e-16 | 81.3 |
MS.gene41919.t1 | AT4G17880 | 34.014 | 147 | 80 | 5 | 161 | 295 | 416 | 557 | 1.13e-15 | 78.2 |
MS.gene41919.t1 | AT1G32640 | 32.374 | 139 | 81 | 3 | 161 | 292 | 452 | 584 | 1.03e-14 | 75.5 |
MS.gene41919.t1 | AT1G63650 | 29.586 | 169 | 96 | 5 | 161 | 309 | 405 | 570 | 1.92e-14 | 74.7 |
MS.gene41919.t1 | AT1G63650 | 29.586 | 169 | 96 | 5 | 161 | 309 | 405 | 570 | 1.92e-14 | 74.7 |
MS.gene41919.t1 | AT1G63650 | 29.586 | 169 | 96 | 5 | 161 | 309 | 405 | 570 | 1.92e-14 | 74.7 |
MS.gene41919.t1 | AT1G01260 | 29.333 | 150 | 84 | 2 | 161 | 310 | 433 | 560 | 7.17e-13 | 69.7 |
MS.gene41919.t1 | AT1G01260 | 29.333 | 150 | 84 | 2 | 161 | 310 | 433 | 560 | 7.17e-13 | 69.7 |
MS.gene41919.t1 | AT1G01260 | 29.333 | 150 | 84 | 2 | 161 | 310 | 433 | 560 | 7.17e-13 | 69.7 |
MS.gene41919.t1 | AT5G41315 | 28.108 | 185 | 104 | 6 | 150 | 309 | 439 | 619 | 1.43e-12 | 68.9 |
MS.gene41919.t1 | AT5G41315 | 28.108 | 185 | 104 | 6 | 150 | 309 | 436 | 616 | 1.54e-12 | 68.9 |
MS.gene41919.t1 | AT5G41315 | 28.108 | 185 | 104 | 6 | 150 | 309 | 431 | 611 | 1.69e-12 | 68.6 |
MS.gene41919.t1 | AT2G46510 | 48.333 | 60 | 31 | 0 | 161 | 220 | 395 | 454 | 4.14e-12 | 67.4 |
MS.gene41919.t1 | AT4G16430 | 45.902 | 61 | 33 | 0 | 161 | 221 | 320 | 380 | 4.74e-12 | 67.0 |
Find 0 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATAATAAAAAAACATTTG+TGG | + | 43357:98039-98058 | None:intergenic | 10.0% |
!!! | ATAAGAAATATTTTTATTCT+AGG | - | 43357:99391-99410 | MS.gene41919:intron | 10.0% |
!!! | TTTCACAATTTTTTAATTTT+TGG | - | 43357:99300-99319 | MS.gene41919:intron | 10.0% |
!! | AAGATTAATATTAAATACAG+TGG | + | 43357:99490-99509 | None:intergenic | 15.0% |
!! | ATTATATTGAGCAATTATAA+TGG | + | 43357:99424-99443 | None:intergenic | 15.0% |
!! | ATTGTGAAAAATAAAGTTAA+TGG | + | 43357:99289-99308 | None:intergenic | 15.0% |
!! | TATAATAATAGTAATAGTGA+TGG | + | 43357:99328-99347 | None:intergenic | 15.0% |
!!! | ATTTTGTTGTCTTTTTATTT+TGG | - | 43357:99445-99464 | MS.gene41919:intron | 15.0% |
!!! | TTCTTTTTATGAAATAATCT+TGG | - | 43357:98807-98826 | MS.gene41919:CDS | 15.0% |
!! | ATCAAGTTATGAAACAAATT+TGG | - | 43357:98413-98432 | MS.gene41919:CDS | 20.0% |
!! | TTTAAATGTAGATATAGAGA+TGG | + | 43357:99263-99282 | None:intergenic | 20.0% |
! | AAATTATGGTAGAGATTGAA+AGG | - | 43357:99155-99174 | MS.gene41919:intron | 25.0% |
! | AACTGAAAAGATGATTTAGA+TGG | + | 43357:98540-98559 | None:intergenic | 25.0% |
! | TGAATACAATTTATTTCCTG+AGG | - | 43357:98260-98279 | MS.gene41919:CDS | 25.0% |
! | TTACTTAATGTACCTTCTTA+AGG | + | 43357:98749-98768 | None:intergenic | 25.0% |
!! | TAGGAAAACATATGTTGATT+CGG | - | 43357:99098-99117 | MS.gene41919:intron | 25.0% |
!!! | ATTGTTGTTTGTTTTGTTCT+TGG | + | 43357:98353-98372 | None:intergenic | 25.0% |
!!! | ATTTTTTTCAGCTCCATATT+TGG | + | 43357:98465-98484 | None:intergenic | 25.0% |
!!! | CTACCATAATTTTAACTAGA+AGG | + | 43357:99147-99166 | None:intergenic | 25.0% |
!!! | TGATTTTGATAAGCCAAATA+TGG | - | 43357:98449-98468 | MS.gene41919:intron | 25.0% |
!!! | TTTATTTTATAGTTGGGTGA+AGG | - | 43357:99516-99535 | MS.gene41919:intron | 25.0% |
AAACAACAATGTTTCACTTC+GGG | - | 43357:98363-98382 | MS.gene41919:CDS | 30.0% | |
AAGAGTTAACCAAGTTGTTT+GGG | + | 43357:98002-98021 | None:intergenic | 30.0% | |
CAAACAACAATGTTTCACTT+CGG | - | 43357:98362-98381 | MS.gene41919:CDS | 30.0% | |
TAATGTACCTTCTTAAGGTT+AGG | + | 43357:98744-98763 | None:intergenic | 30.0% | |
TACTAATTCCTCACAAAACT+TGG | - | 43357:98599-98618 | MS.gene41919:CDS | 30.0% | |
TCAGTTTCAAATTCCATCTT+TGG | - | 43357:98554-98573 | MS.gene41919:intron | 30.0% | |
! | AATAACAGTGTCTTACCTTT+TGG | - | 43357:99196-99215 | MS.gene41919:intron | 30.0% |
! | TTTTGTGAGGAATTAGTAGT+GGG | + | 43357:98597-98616 | None:intergenic | 30.0% |
!! | AATTAGTAGTGGGTGAATTT+GGG | + | 43357:98587-98606 | None:intergenic | 30.0% |
!! | TTTTGTTTCCAAGTTTTGTG+AGG | + | 43357:98610-98629 | None:intergenic | 30.0% |
AACAACAATGTTTCACTTCG+GGG | - | 43357:98364-98383 | MS.gene41919:CDS | 35.0% | |
AATCACTAATGAGTGCTCTT+AGG | + | 43357:98094-98113 | None:intergenic | 35.0% | |
CATCTGTATCAAGGAAATTC+AGG | + | 43357:98293-98312 | None:intergenic | 35.0% | |
CCATTGTGTAACAATCTGTT+AGG | - | 43357:98862-98881 | MS.gene41919:CDS | 35.0% | |
CCATTTCCTGCAAAAACAAA+AGG | + | 43357:98239-98258 | None:intergenic | 35.0% | |
CCTAACAGATTGTTACACAA+TGG | + | 43357:98865-98884 | None:intergenic | 35.0% | |
CCTGCAAAAACAAAAGGAAA+AGG | + | 43357:98233-98252 | None:intergenic | 35.0% | |
CGACATTACTATTATTGCTC+AGG | - | 43357:99231-99250 | MS.gene41919:intron | 35.0% | |
GAAGAGTTAACCAAGTTGTT+TGG | + | 43357:98003-98022 | None:intergenic | 35.0% | |
GAATTTCCTTGATACAGATG+TGG | - | 43357:98293-98312 | MS.gene41919:CDS | 35.0% | |
GAGAGAATTGATTGTGTTGT+TGG | - | 43357:99046-99065 | MS.gene41919:CDS | 35.0% | |
GAGCAATAATAGTAATGTCG+AGG | + | 43357:99231-99250 | None:intergenic | 35.0% | |
GATGAGTTACTAAGAGATGT+GGG | + | 43357:98396-98415 | None:intergenic | 35.0% | |
TAAATCAGATAACCAGCTGT+TGG | + | 43357:97778-97797 | None:intergenic | 35.0% | |
TCATGGTCAAGATCATATCA+TGG | - | 43357:98659-98678 | MS.gene41919:CDS | 35.0% | |
TCTTGTTCCTAACCTTAAGA+AGG | - | 43357:98734-98753 | MS.gene41919:CDS | 35.0% | |
TGATGAGTTACTAAGAGATG+TGG | + | 43357:98397-98416 | None:intergenic | 35.0% | |
TTGTGTAACAATCTGTTAGG+TGG | - | 43357:98865-98884 | MS.gene41919:CDS | 35.0% | |
! | ACTTTTGCTTCCACTTGAAA+TGG | + | 43357:99076-99095 | None:intergenic | 35.0% |
! | CAAGTGGAAGCAAAAGTTTT+AGG | - | 43357:99079-99098 | MS.gene41919:intron | 35.0% |
! | GGGCCTTCTAGTTAAAATTA+TGG | - | 43357:99141-99160 | MS.gene41919:intron | 35.0% |
! | GTTTTGTGAGGAATTAGTAG+TGG | + | 43357:98598-98617 | None:intergenic | 35.0% |
!! | GAATTAGTAGTGGGTGAATT+TGG | + | 43357:98588-98607 | None:intergenic | 35.0% |
!! | GATGGTGATGAAGAAAGTTT+TGG | + | 43357:98522-98541 | None:intergenic | 35.0% |
!! | TGTTGGTTTACCATTTCAAG+TGG | - | 43357:99063-99082 | MS.gene41919:CDS | 35.0% |
!!! | CCTTTTCCTTTTGTTTTTGC+AGG | - | 43357:98230-98249 | MS.gene41919:CDS | 35.0% |
!!! | CCTTTTGTTTTTGCAGGAAA+TGG | - | 43357:98236-98255 | MS.gene41919:CDS | 35.0% |
AAAAGGTCTCGTACTCATCA+TGG | - | 43357:98642-98661 | MS.gene41919:CDS | 40.0% | |
AATTCTCTCATCACATGACG+AGG | + | 43357:99035-99054 | None:intergenic | 40.0% | |
ACTCTACCACATCTGTATCA+AGG | + | 43357:98302-98321 | None:intergenic | 40.0% | |
ATTCTCTCATCACATGACGA+GGG | + | 43357:99034-99053 | None:intergenic | 40.0% | |
CAAAAACCTCAGAGAGCAAA+AGG | - | 43357:98625-98644 | MS.gene41919:CDS | 40.0% | |
GAGTTTCTCTCACATGACAT+AGG | - | 43357:98318-98337 | MS.gene41919:CDS | 40.0% | |
TCAGAACTTCATTGCTCTTG+CGG | - | 43357:98710-98729 | MS.gene41919:CDS | 40.0% | |
TCGAGGATAGAATCTCCAAA+AGG | + | 43357:99214-99233 | None:intergenic | 40.0% | |
! | CTAATGAAGCGCTCTTGTTA+GGG | + | 43357:98180-98199 | None:intergenic | 40.0% |
! | TTTGGGATGTTGTCCAAAGA+TGG | + | 43357:98570-98589 | None:intergenic | 40.0% |
!! | AAATTCAGGTTGCTTTCCTC+AGG | + | 43357:98279-98298 | None:intergenic | 40.0% |
ACGTATCATCAACCAACAGC+TGG | - | 43357:97763-97782 | MS.gene41919:CDS | 45.0% | |
ACTTCAATGCTGTCATGCGT+AGG | + | 43357:99575-99594 | None:intergenic | 45.0% | |
AGGCTACAACATGAGCATCA+AGG | - | 43357:99536-99555 | MS.gene41919:intron | 45.0% | |
GTTACTAAGAGATGTGGGAG+TGG | + | 43357:98391-98410 | None:intergenic | 45.0% | |
TTCTCTCATCACATGACGAG+GGG | + | 43357:99033-99052 | None:intergenic | 45.0% | |
! | ATCCAATGTCAAGAGCACAG+GGG | - | 43357:99121-99140 | MS.gene41919:intron | 45.0% |
! | GATCCAATGTCAAGAGCACA+GGG | - | 43357:99120-99139 | MS.gene41919:intron | 45.0% |
! | GCTAATGAAGCGCTCTTGTT+AGG | + | 43357:98181-98200 | None:intergenic | 45.0% |
!! | CCTGGTTTGGTCAAGACTAT+CGG | + | 43357:98992-99011 | None:intergenic | 45.0% |
!!! | AATTATTTTATTTTATAGTT+GGG | - | 43357:99510-99529 | MS.gene41919:intron | 5.0% |
!!! | TAATTATTTTATTTTATAGT+TGG | - | 43357:99509-99528 | MS.gene41919:intron | 5.0% |
AGTGCTCTTAGGACACTCGT+TGG | + | 43357:98083-98102 | None:intergenic | 50.0% | |
ATTCCCGAGGGAACAATGCT+TGG | + | 43357:97927-97946 | None:intergenic | 50.0% | |
CCAAAGGTAGACGACCAATC+CGG | - | 43357:97875-97894 | MS.gene41919:intron | 50.0% | |
CCAAGTTGTTTGGGCTTCAG+TGG | + | 43357:97993-98012 | None:intergenic | 50.0% | |
CCACTGAAGCCCAAACAACT+TGG | - | 43357:97990-98009 | MS.gene41919:intron | 50.0% | |
GTGGCAAAGAGATCCTTCCA+AGG | + | 43357:97974-97993 | None:intergenic | 50.0% | |
! | ACGAGACCTTTTGCTCTCTG+AGG | + | 43357:98634-98653 | None:intergenic | 50.0% |
! | CCGATAGTCTTGACCAAACC+AGG | - | 43357:98989-99008 | MS.gene41919:CDS | 50.0% |
! | GATTGGTCGTCTACCTTTGG+TGG | + | 43357:97875-97894 | None:intergenic | 50.0% |
! | GGATCCAATGTCAAGAGCAC+AGG | - | 43357:99119-99138 | MS.gene41919:intron | 50.0% |
AAGGACGTACCCGGGAATAC+CGG | + | 43357:97955-97974 | None:intergenic | 55.0% | |
AATACCGGGTTCGATTCCCG+AGG | + | 43357:97940-97959 | None:intergenic | 55.0% | |
ACCTGTTTCCGAGCCACCAA+AGG | - | 43357:97859-97878 | MS.gene41919:intron | 55.0% | |
AGGGAACAATGCTTGGCCAG+TGG | + | 43357:97920-97939 | None:intergenic | 55.0% | |
AGGGGTTGTCATCGTTGCAG+AGG | + | 43357:99015-99034 | None:intergenic | 55.0% | |
ATACCGGGTTCGATTCCCGA+GGG | + | 43357:97939-97958 | None:intergenic | 55.0% | |
ATCCTTCCAAGGACGTACCC+GGG | + | 43357:97963-97982 | None:intergenic | 55.0% | |
ATCGTTGCAGAGGCCTGGTT+TGG | + | 43357:99005-99024 | None:intergenic | 55.0% | |
CCAATCCGGCTCATGCGTAA+AGG | - | 43357:97889-97908 | MS.gene41919:intron | 55.0% | |
CCTTTACGCATGAGCCGGAT+TGG | + | 43357:97892-97911 | None:intergenic | 55.0% | |
GAATCGAACCCGGTATTCCC+GGG | - | 43357:97943-97962 | MS.gene41919:intron | 55.0% | |
GATCCTTCCAAGGACGTACC+CGG | + | 43357:97964-97983 | None:intergenic | 55.0% | |
GCATGCCTTTACGCATGAGC+CGG | + | 43357:97897-97916 | None:intergenic | 55.0% | |
GGAATCGAACCCGGTATTCC+CGG | - | 43357:97942-97961 | MS.gene41919:intron | 55.0% | |
GGGAACAATGCTTGGCCAGT+GGG | + | 43357:97919-97938 | None:intergenic | 55.0% | |
TTGTCATCGTTGCAGAGGCC+TGG | + | 43357:99010-99029 | None:intergenic | 55.0% | |
! | ACCTTTGGTGGCTCGGAAAC+AGG | + | 43357:97863-97882 | None:intergenic | 55.0% |
! | ATGCGTAAAGGCATGCCCAC+TGG | - | 43357:97901-97920 | MS.gene41919:intron | 55.0% |
! | CTGGCCAAGCATTGTTCCCT+CGG | - | 43357:97920-97939 | MS.gene41919:intron | 55.0% |
! | GTCGTCTACCTTTGGTGGCT+CGG | + | 43357:97870-97889 | None:intergenic | 55.0% |
! | TGGCCAAGCATTGTTCCCTC+GGG | - | 43357:97921-97940 | MS.gene41919:intron | 55.0% |
!! | CCGGATTGGTCGTCTACCTT+TGG | + | 43357:97878-97897 | None:intergenic | 55.0% |
AGGACGTACCCGGGAATACC+GGG | + | 43357:97954-97973 | None:intergenic | 60.0% | |
GGCCCCTGTGCTCTTGACAT+TGG | + | 43357:99126-99145 | None:intergenic | 60.0% | |
GGTATTCCCGGGTACGTCCT+TGG | - | 43357:97954-97973 | MS.gene41919:intron | 60.0% | |
GTTCCCTCGGGAATCGAACC+CGG | - | 43357:97933-97952 | MS.gene41919:intron | 60.0% | |
TTCCCGGGTACGTCCTTGGA+AGG | - | 43357:97958-97977 | MS.gene41919:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
43357 | gene | 97735 | 99602 | 97735 | ID=MS.gene41919 |
43357 | mRNA | 97735 | 99602 | 97735 | ID=MS.gene41919.t1;Parent=MS.gene41919 |
43357 | exon | 99540 | 99602 | 99540 | ID=MS.gene41919.t1.exon1;Parent=MS.gene41919.t1 |
43357 | CDS | 99540 | 99602 | 99540 | ID=cds.MS.gene41919.t1;Parent=MS.gene41919.t1 |
43357 | exon | 98582 | 99085 | 98582 | ID=MS.gene41919.t1.exon2;Parent=MS.gene41919.t1 |
43357 | CDS | 98582 | 99085 | 98582 | ID=cds.MS.gene41919.t1;Parent=MS.gene41919.t1 |
43357 | exon | 98085 | 98453 | 98085 | ID=MS.gene41919.t1.exon3;Parent=MS.gene41919.t1 |
43357 | CDS | 98085 | 98453 | 98085 | ID=cds.MS.gene41919.t1;Parent=MS.gene41919.t1 |
43357 | exon | 97735 | 97809 | 97735 | ID=MS.gene41919.t1.exon4;Parent=MS.gene41919.t1 |
43357 | CDS | 97735 | 97809 | 97735 | ID=cds.MS.gene41919.t1;Parent=MS.gene41919.t1 |
Gene Sequence |
Protein sequence |