AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene41989

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41989.t1 MTR_6g044690 90.053 563 55 1 1 562 1 563 0.0 1023
MS.gene41989.t1 MTR_0376s0030 75.355 564 134 3 1 562 1 561 0.0 863
MS.gene41989.t1 MTR_6g043960 84.032 501 60 1 62 562 1 481 0.0 861
MS.gene41989.t1 MTR_2g054460 76.983 517 59 3 52 562 1 463 0.0 790
MS.gene41989.t1 MTR_1g035420 59.266 572 188 11 5 562 105 645 0.0 647
MS.gene41989.t1 MTR_8g070070 50.729 617 228 11 12 567 160 761 0.0 591
MS.gene41989.t1 MTR_8g070075 48.856 612 240 13 12 567 160 754 0.0 563
MS.gene41989.t1 MTR_8g071030 49.412 595 247 11 12 567 162 741 0.0 558
MS.gene41989.t1 MTR_1g035400 55.939 522 196 9 55 562 63 564 0.0 553
MS.gene41989.t1 MTR_7g088370 39.540 478 249 11 100 562 227 679 1.66e-98 315
MS.gene41989.t1 MTR_8g042750 36.260 524 280 15 60 562 167 657 1.16e-93 301
MS.gene41989.t1 MTR_4g010830 38.912 478 242 13 109 566 507 954 1.26e-91 302
MS.gene41989.t1 MTR_5g013420 37.992 508 260 15 85 566 585 1063 7.78e-90 299
MS.gene41989.t1 MTR_5g013420 37.992 508 260 15 85 566 585 1063 1.05e-89 299
MS.gene41989.t1 MTR_3g011440 35.115 524 288 14 60 562 141 633 7.54e-89 288
MS.gene41989.t1 MTR_4g010550 35.934 487 235 16 98 566 11 438 2.93e-81 262
MS.gene41989.t1 MTR_6g061270 34.979 486 275 12 109 566 196 668 7.17e-81 268
MS.gene41989.t1 MTR_7g084090 34.888 493 287 12 99 566 248 731 1.93e-79 265
MS.gene41989.t1 MTR_6g061200 34.583 480 256 15 109 566 196 639 2.10e-73 247
MS.gene41989.t1 MTR_7g084090 37.135 377 200 11 99 451 248 611 5.53e-64 222
MS.gene41989.t1 MTR_6g044000 84.956 113 17 0 62 174 1 113 8.03e-59 194
MS.gene41989.t1 MTR_6g044000 96.154 52 2 0 511 562 117 168 1.83e-29 114
MS.gene41989.t1 MTR_7g445710 30.833 480 242 15 114 572 112 522 2.79e-52 187
MS.gene41989.t1 MTR_1g048950 32.613 463 257 12 130 570 88 517 3.34e-52 187
MS.gene41989.t1 MTR_7g445530 29.661 472 237 13 114 561 112 512 3.31e-50 181
MS.gene41989.t1 MTR_7g450730 30.464 453 233 14 114 566 109 479 1.60e-46 171
MS.gene41989.t1 MTR_7g052480 30.091 329 182 13 263 566 225 530 1.44e-31 129
MS.gene41989.t1 MTR_7g445600 33.113 151 63 2 411 561 243 355 3.49e-21 95.9
MS.gene41989.t1 MTR_7g445600 34.711 121 73 3 114 233 108 223 5.09e-12 68.2
MS.gene41989.t1 MTR_5g018850 27.778 288 160 10 305 558 1207 1480 1.69e-19 93.6
MS.gene41989.t1 MTR_8g078505 29.545 176 110 3 386 561 354 515 9.69e-19 90.1
MS.gene41989.t1 MTR_1g069570 25.566 309 164 10 309 566 430 723 8.47e-18 87.8
MS.gene41989.t1 MTR_4g132610 27.979 193 108 4 379 561 852 1023 4.28e-17 85.9
MS.gene41989.t1 MTR_1g080340 29.016 193 121 5 376 566 385 563 7.37e-17 84.3
MS.gene41989.t1 MTR_8g078490 29.032 186 115 4 379 561 1058 1229 8.76e-17 84.7
MS.gene41989.t1 MTR_7g098390 28.736 174 109 5 391 562 515 675 1.76e-14 77.0
MS.gene41989.t1 MTR_1g069570 25.954 262 129 9 309 520 430 676 3.49e-14 76.3
MS.gene41989.t1 MTR_5g098680 30.000 180 97 5 123 280 244 416 1.39e-13 74.3
MS.gene41989.t1 MTR_4g131630 59.615 52 18 1 508 559 1 49 3.92e-12 61.6
MS.gene41989.t1 MTR_8g102580 28.333 180 100 5 123 280 238 410 2.40e-11 67.0
MS.gene41989.t1 MTR_7g445810 29.801 151 97 3 114 261 125 269 2.59e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene41989.t1 AT4G13460 49.278 554 239 12 34 569 115 644 2.08e-175 511
MS.gene41989.t1 AT4G13460 49.278 554 239 12 34 569 115 644 2.08e-175 511
MS.gene41989.t1 AT2G33290 49.341 531 232 11 45 562 132 638 3.60e-171 500
MS.gene41989.t1 AT2G33290 49.341 531 232 11 45 562 132 638 3.60e-171 500
MS.gene41989.t1 AT2G33290 49.341 531 232 11 45 562 132 638 3.60e-171 500
MS.gene41989.t1 AT2G33290 49.341 531 232 11 45 562 132 638 3.60e-171 500
MS.gene41989.t1 AT2G35160 33.810 559 289 16 25 566 238 732 3.12e-85 281
MS.gene41989.t1 AT5G04940 34.783 529 275 15 60 562 155 639 7.46e-85 278
MS.gene41989.t1 AT5G04940 34.783 529 275 15 60 562 155 639 7.46e-85 278
MS.gene41989.t1 AT2G35160 33.810 559 289 16 25 566 274 768 9.44e-85 280
MS.gene41989.t1 AT2G35160 33.810 559 289 16 25 566 274 768 9.44e-85 280
MS.gene41989.t1 AT2G35160 33.810 559 289 16 25 566 274 768 9.44e-85 280
MS.gene41989.t1 AT2G35160 33.810 559 289 16 25 566 274 768 9.44e-85 280
MS.gene41989.t1 AT2G22740 33.333 534 290 11 60 566 270 764 5.80e-84 278
MS.gene41989.t1 AT2G22740 33.333 534 290 11 60 566 270 764 5.80e-84 278
MS.gene41989.t1 AT1G73100 37.740 469 252 14 114 562 190 638 8.14e-84 275
MS.gene41989.t1 AT5G13960 34.261 467 265 16 129 566 11 464 1.03e-74 246
MS.gene41989.t1 AT5G13960 34.012 491 273 17 109 566 126 598 1.57e-74 249
MS.gene41989.t1 AT1G17770 30.609 575 344 14 19 562 110 660 4.50e-74 249
MS.gene41989.t1 AT2G24740 35.941 473 250 16 109 562 285 723 9.26e-72 244
MS.gene41989.t1 AT5G47150 41.111 180 89 5 109 279 153 324 2.61e-31 124
MS.gene41989.t1 AT2G23740 32.447 188 112 4 379 564 1184 1358 1.03e-22 103
MS.gene41989.t1 AT2G23740 32.447 188 112 4 379 564 1184 1358 1.03e-22 103
MS.gene41989.t1 AT2G23740 32.447 188 112 4 379 564 1184 1358 1.03e-22 103
MS.gene41989.t1 AT2G23740 32.447 188 112 4 379 564 1177 1351 1.11e-22 103
MS.gene41989.t1 AT5G47160 37.017 181 96 6 106 276 236 408 3.28e-22 99.8
MS.gene41989.t1 AT5G47160 37.017 181 96 6 106 276 236 408 3.28e-22 99.8
MS.gene41989.t1 AT5G47160 37.017 181 96 6 106 276 236 408 3.28e-22 99.8
MS.gene41989.t1 AT3G03750 28.000 275 158 8 309 562 68 323 1.66e-19 90.9
MS.gene41989.t1 AT2G23740 34.028 144 80 4 379 520 1184 1314 7.91e-17 85.1
MS.gene41989.t1 AT2G23740 34.028 144 80 4 379 520 1184 1314 7.91e-17 85.1
MS.gene41989.t1 AT2G05900 33.333 198 115 9 150 337 1 191 5.15e-16 79.7
MS.gene41989.t1 AT1G57820 29.282 181 98 6 123 280 254 427 9.51e-13 71.6
MS.gene41989.t1 AT1G57820 29.282 181 98 6 123 280 254 427 9.51e-13 71.6
MS.gene41989.t1 AT1G57820 29.775 178 98 7 123 280 254 424 1.53e-12 70.9

Find 125 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCTATGATCATGGTAAT+TGG 0.190966 6.4:-17598383 MS.gene41989:CDS
ATAAAAGTTCCAGCTAAAAT+AGG 0.203094 6.4:+17598666 None:intergenic
CTCTGAGGAAGCAAGAATTT+TGG 0.214710 6.4:+17598948 None:intergenic
ATTGAATGTTGGTTTGAAAA+AGG 0.222300 6.4:-17599212 MS.gene41989:CDS
GGTTGCCTCGTTCCAACTTC+TGG 0.257365 6.4:+17599354 None:intergenic
TTTATAAGTTTATGTTATCT+AGG 0.300253 6.4:-17599172 MS.gene41989:CDS
TATTCGTGTGTCAGGTTTGC+TGG 0.316438 6.4:-17599759 MS.gene41989:CDS
GACTTATTCAAAAGTCGATT+TGG 0.316958 6.4:+17598558 None:intergenic
AGGATCATACTACCCATCTT+AGG 0.317543 6.4:+17599137 None:intergenic
ACATAGGATTAGAACATAAT+TGG 0.321952 6.4:+17599087 None:intergenic
CCAGTTCCTGGTGTTTGTAT+TGG 0.341157 6.4:-17599575 MS.gene41989:CDS
TGGAACGATGGCGCGCGATA+TGG 0.343186 6.4:+17599949 None:intergenic
AGAAACCGTGTGACGCAAAA+AGG 0.357268 6.4:-17598753 MS.gene41989:CDS
TGTTATTCACTTCTTCTGTC+TGG 0.365058 6.4:+17599681 None:intergenic
TAAGCATACTTGCTTCCTTA+AGG 0.369544 6.4:+17599117 None:intergenic
ATGAGACTAGTTGGGGAGTT+AGG 0.370168 6.4:-17598698 MS.gene41989:CDS
TATCTTGATAAGAAAATCAT+TGG 0.372117 6.4:-17599599 MS.gene41989:CDS
AAAATCATTGGTCCAGTTCC+TGG 0.372423 6.4:-17599587 MS.gene41989:CDS
ACTAATTGAACAAACACATT+TGG 0.377806 6.4:+17598405 None:intergenic
AAATCTATGCAGAAGCTTAG+AGG 0.379307 6.4:-17599872 MS.gene41989:CDS
TGCAATATGAGATTGATGTT+AGG 0.379723 6.4:-17599313 MS.gene41989:CDS
CATGCTAGTATGAGTTCTAA+TGG 0.384429 6.4:-17599476 MS.gene41989:CDS
TGCGAAGGACAACTACAAAA+AGG 0.399229 6.4:+17598780 None:intergenic
TTTGATTCTATTCGTGTGTC+AGG 0.403272 6.4:-17599767 MS.gene41989:CDS
TAGATCTAATGAGACTAGTT+GGG 0.409391 6.4:-17598706 MS.gene41989:CDS
GAATAAGTCCACTCAAGAAT+GGG 0.410231 6.4:-17598544 MS.gene41989:CDS
GCAATATGAGATTGATGTTA+GGG 0.414210 6.4:-17599312 MS.gene41989:CDS
TAAAAGTTCCAGCTAAAATA+GGG 0.417727 6.4:+17598667 None:intergenic
CAGCAGCTATCAAGTCATTT+CGG 0.419039 6.4:+17599651 None:intergenic
TAGTTGGGGAGTTAGGTCTT+TGG 0.423498 6.4:-17598691 MS.gene41989:CDS
TGAATAAGTCCACTCAAGAA+TGG 0.424588 6.4:-17598545 MS.gene41989:CDS
GAACAAACACATTTGGAGTT+GGG 0.430179 6.4:+17598412 None:intergenic
TATGCGGGATGCACATGATT+AGG 0.431076 6.4:+17598501 None:intergenic
CCATCTTATGTTATTTGCAA+TGG 0.433181 6.4:-17598352 MS.gene41989:CDS
TGTATAAGATAATTGAATGT+TGG 0.433790 6.4:-17599223 MS.gene41989:CDS
GAGTGTTGTGAATGCGTTGA+TGG 0.434282 6.4:-17598894 MS.gene41989:CDS
GTCCGTATCGTGAGATGGTC+CGG 0.436727 6.4:-17599805 MS.gene41989:CDS
TTAGATCTAATGAGACTAGT+TGG 0.437286 6.4:-17598707 MS.gene41989:CDS
GGTTCAAGGTCAACCTAAGA+TGG 0.441183 6.4:-17599150 MS.gene41989:CDS
GTGTTGTCATTCATGATTGA+AGG 0.442888 6.4:+17598864 None:intergenic
CAATTAGTTCTCTATGATCA+TGG 0.448311 6.4:-17598390 MS.gene41989:CDS
CCATTGCAAATAACATAAGA+TGG 0.449331 6.4:+17598352 None:intergenic
TGGTACTTCTACTACTAGTA+AGG 0.451010 6.4:-17599264 MS.gene41989:CDS
AGAATAATCGTAAGAACAAA+AGG 0.453219 6.4:-17599730 MS.gene41989:CDS
GATGGGTAGTATGATCCTTA+AGG 0.457082 6.4:-17599132 MS.gene41989:CDS
ACTAGTGTGGTTGTGTCTGA+TGG 0.461191 6.4:-17599440 MS.gene41989:CDS
CCAATACAAACACCAGGAAC+TGG 0.467377 6.4:+17599575 None:intergenic
TGAACAAACACATTTGGAGT+TGG 0.468046 6.4:+17598411 None:intergenic
TCCAATGGGAAGGAGAATAT+CGG 0.475566 6.4:-17599044 MS.gene41989:CDS
CAAACAATATTCTTGTTCTC+CGG 0.476545 6.4:+17599786 None:intergenic
AGAAGTGAAATGTGTGTGAT+TGG 0.479419 6.4:-17599536 MS.gene41989:CDS
ATTTCTGATGATATTTCCAA+TGG 0.480319 6.4:-17599059 MS.gene41989:CDS
TTTATGTTATCTAGGGTTCA+AGG 0.492567 6.4:-17599164 MS.gene41989:CDS
CATTGCAAATAACATAAGAT+GGG 0.496606 6.4:+17598353 None:intergenic
ACTTTACCTTATAGTAAAAG+TGG 0.504320 6.4:-17598843 MS.gene41989:CDS
TCCGATATTCTCCTTCCCAT+TGG 0.504521 6.4:+17599043 None:intergenic
AAAAGGTATTAAATATAGGT+TGG 0.507633 6.4:-17598736 MS.gene41989:CDS
TCAAGACTAAGCTCTCTCAT+TGG 0.507939 6.4:+17598318 None:intergenic
CAGAAGAAGTGAATAACAGT+AGG 0.509848 6.4:-17599676 MS.gene41989:CDS
CTTGCTTCCTCAGAGCATGA+TGG 0.513053 6.4:-17598940 MS.gene41989:CDS
AGAGTTATGTTCACCATCCA+TGG 0.513297 6.4:+17598593 None:intergenic
CACAACCACACTAGTAGCAA+TGG 0.513662 6.4:+17599448 None:intergenic
CTCGTCGGGAACTGGAACGA+TGG 0.514539 6.4:+17599937 None:intergenic
TATAACAACAACACTCTGGC+GGG 0.515349 6.4:-17599905 MS.gene41989:CDS
GGAGACAAAATTATCTACTC+TGG 0.518712 6.4:-17599398 MS.gene41989:CDS
TACACGGTCAACCACAAGCT+GGG 0.519450 6.4:-17599511 MS.gene41989:CDS
AGAGAGCTTAGTCTTGATCA+TGG 0.523319 6.4:-17598312 MS.gene41989:CDS
CGGAAGATACTCAAATTGCA+TGG 0.524573 6.4:+17598983 None:intergenic
TGATGATATTTCCAATGGGA+AGG 0.528993 6.4:-17599054 MS.gene41989:CDS
ATTGATGTTAGGGTTATTCG+AGG 0.529934 6.4:-17599302 MS.gene41989:CDS
TTATAAGTTTATGTTATCTA+GGG 0.530619 6.4:-17599171 MS.gene41989:CDS
AGACTAAGCTCTCTCATTGG+AGG 0.531678 6.4:+17598321 None:intergenic
AATCTATGCAGAAGCTTAGA+GGG 0.534148 6.4:-17599871 MS.gene41989:CDS
ACATCCAATGCAAAATCTAA+AGG 0.535372 6.4:+17598474 None:intergenic
CTCCCTAGTCAAAACAAGCC+CGG 0.538168 6.4:+17598632 None:intergenic
GAGAGCTTAGTCTTGATCAT+GGG 0.538487 6.4:-17598311 MS.gene41989:CDS
TGGCCATGGTGATGTGAAGC+AGG 0.545724 6.4:-17599378 MS.gene41989:CDS
AAATCTAAAGGAGGATATGC+GGG 0.546981 6.4:+17598486 None:intergenic
TCATCAGAAATGACATACAT+AGG 0.547565 6.4:+17599071 None:intergenic
TGGGCTATGACTAATATAGC+TGG 0.552213 6.4:+17598431 None:intergenic
ACAACCACACTAGTAGCAAT+GGG 0.558434 6.4:+17599449 None:intergenic
CTCCGGACCATCTCACGATA+CGG 0.564668 6.4:+17599803 None:intergenic
GGAGCTTGTTCGCACTGCGA+TGG 0.569900 6.4:-17599840 MS.gene41989:CDS
TCACCGTCCGTATCGTGAGA+TGG 0.572522 6.4:-17599810 MS.gene41989:CDS
GGAACGAGGCAACCTTGCTA+TGG 0.574021 6.4:-17599345 MS.gene41989:CDS
TGTGAAGCAGGACCAGAAGT+TGG 0.574915 6.4:-17599366 MS.gene41989:CDS
TTTCTGATGATATTTCCAAT+GGG 0.579478 6.4:-17599058 MS.gene41989:CDS
AGATCTAATGAGACTAGTTG+GGG 0.582316 6.4:-17598705 MS.gene41989:CDS
GGATATAATGATGATGATCA+AGG 0.586899 6.4:-17599419 MS.gene41989:CDS
TTACACGGTCAACCACAAGC+TGG 0.590249 6.4:-17599512 MS.gene41989:CDS
CTTTACCTTATAGTAAAAGT+GGG 0.590971 6.4:-17598842 MS.gene41989:CDS
GACTAAGCTCTCTCATTGGA+GGG 0.593113 6.4:+17598322 None:intergenic
AAATTATAACAACAACACTC+TGG 0.601116 6.4:-17599909 MS.gene41989:CDS
TTATAACAACAACACTCTGG+CGG 0.601292 6.4:-17599906 MS.gene41989:CDS
GGAAGATACTCAAATTGCAT+GGG 0.603623 6.4:+17598984 None:intergenic
GCATACTTGTCACCATAGCA+AGG 0.603748 6.4:+17599333 None:intergenic
GTTCAAGGTCAACCTAAGAT+GGG 0.609539 6.4:-17599149 MS.gene41989:CDS
AGAAGAAGTGAATAACAGTA+GGG 0.609908 6.4:-17599675 MS.gene41989:CDS
ACGATGGCGCGCGATATGGA+AGG 0.611075 6.4:+17599953 None:intergenic
GCTGCTTTGATGAATGATCA+TGG 0.613817 6.4:-17599632 MS.gene41989:CDS
GCAATTTGAGTATCTTCCGA+AGG 0.614305 6.4:-17598979 MS.gene41989:CDS
AGAGCTTAGTCTTGATCATG+GGG 0.614589 6.4:-17598310 MS.gene41989:CDS
CAAATCACCCCATTCTTGAG+TGG 0.615312 6.4:+17598536 None:intergenic
GAAGCTTAGAGGGCAGAACA+AGG 0.621471 6.4:-17599861 MS.gene41989:CDS
AAAATCTAAAGGAGGATATG+CGG 0.621572 6.4:+17598485 None:intergenic
AAAATTATCTACTCTGGCCA+TGG 0.625235 6.4:-17599392 MS.gene41989:CDS
TTCCTCAGAGCATGATGGAG+AGG 0.627575 6.4:-17598935 MS.gene41989:CDS
TCCAATGCAAAATCTAAAGG+AGG 0.629567 6.4:+17598477 None:intergenic
ATTGCAAATAACATAAGATG+GGG 0.634153 6.4:+17598354 None:intergenic
CCTACCCATTGCTACTAGTG+TGG 0.640494 6.4:-17599453 MS.gene41989:CDS
GAAGCAAGTATGCTTAAGAG+AGG 0.642544 6.4:-17599110 MS.gene41989:CDS
ACACGGTTTCTGCAATGCGA+AGG 0.642997 6.4:+17598765 None:intergenic
CATTGGATGTATCAACGATG+AGG 0.644772 6.4:-17598461 MS.gene41989:CDS
AAATAATCAATCCCAGCTTG+TGG 0.645273 6.4:+17599500 None:intergenic
TTCCTCTCCATCATGCTCTG+AGG 0.646004 6.4:+17598933 None:intergenic
CGATGGCGCGCGATATGGAA+GGG 0.646458 6.4:+17599954 None:intergenic
GGTCCTGCTTCACATCACCA+TGG 0.648806 6.4:+17599375 None:intergenic
CCACACTAGTAGCAATGGGT+AGG 0.648972 6.4:+17599453 None:intergenic
AATAAGTCCACTCAAGAATG+GGG 0.656512 6.4:-17598543 MS.gene41989:CDS
AGGTCATTAATTTATGAATG+CGG 0.658707 6.4:-17598804 MS.gene41989:CDS
ATATCACCAATACAAACACC+AGG 0.674752 6.4:+17599569 None:intergenic
CAGGACCAGAAGTTGGAACG+AGG 0.677973 6.4:-17599359 MS.gene41989:CDS
GGACCATCTCACGATACGGA+CGG 0.685403 6.4:+17599807 None:intergenic
ATGTGTGTGATTGGTTTACA+CGG 0.697183 6.4:-17599527 MS.gene41989:CDS
GAGCTTAGTCTTGATCATGG+GGG 0.762444 6.4:-17598309 MS.gene41989:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGTTTATGTTATCTA+GGG - chr6.4:17599081-17599100 MS.gene41989:CDS 15.0%
!! TTTATAAGTTTATGTTATCT+AGG - chr6.4:17599080-17599099 MS.gene41989:CDS 15.0%
!! TATCTTGATAAGAAAATCAT+TGG - chr6.4:17598653-17598672 MS.gene41989:CDS 20.0%
!! TGTATAAGATAATTGAATGT+TGG - chr6.4:17599029-17599048 MS.gene41989:CDS 20.0%
!!! AAAAGGTATTAAATATAGGT+TGG - chr6.4:17599516-17599535 MS.gene41989:CDS 20.0%
! AAATTATAACAACAACACTC+TGG - chr6.4:17598343-17598362 MS.gene41989:CDS 25.0%
! ACATAGGATTAGAACATAAT+TGG + chr6.4:17599168-17599187 None:intergenic 25.0%
! ACTAATTGAACAAACACATT+TGG + chr6.4:17599850-17599869 None:intergenic 25.0%
! ACTTTACCTTATAGTAAAAG+TGG - chr6.4:17599409-17599428 MS.gene41989:CDS 25.0%
! AGAATAATCGTAAGAACAAA+AGG - chr6.4:17598522-17598541 MS.gene41989:CDS 25.0%
! AGGTCATTAATTTATGAATG+CGG - chr6.4:17599448-17599467 MS.gene41989:CDS 25.0%
! ATAAAAGTTCCAGCTAAAAT+AGG + chr6.4:17599589-17599608 None:intergenic 25.0%
! ATTGCAAATAACATAAGATG+GGG + chr6.4:17599901-17599920 None:intergenic 25.0%
! ATTTCTGATGATATTTCCAA+TGG - chr6.4:17599193-17599212 MS.gene41989:CDS 25.0%
! CATTGCAAATAACATAAGAT+GGG + chr6.4:17599902-17599921 None:intergenic 25.0%
! CTTTACCTTATAGTAAAAGT+GGG - chr6.4:17599410-17599429 MS.gene41989:CDS 25.0%
! TAAAAGTTCCAGCTAAAATA+GGG + chr6.4:17599588-17599607 None:intergenic 25.0%
! TTTCTGATGATATTTCCAAT+GGG - chr6.4:17599194-17599213 MS.gene41989:CDS 25.0%
!! GTTATAATTTTGTAACTCGT+CGG + chr6.4:17598333-17598352 None:intergenic 25.0%
!! TTATAATTTTGTAACTCGTC+GGG + chr6.4:17598332-17598351 None:intergenic 25.0%
!!! AAAAGTGGGTTTCTTTTAAA+AGG - chr6.4:17599424-17599443 MS.gene41989:CDS 25.0%
!!! AAAGTGGGTTTCTTTTAAAA+GGG - chr6.4:17599425-17599444 MS.gene41989:CDS 25.0%
!!! AGTAAGGTTTTTGTTTATGA+TGG - chr6.4:17599004-17599023 MS.gene41989:CDS 25.0%
!!! ATTGAATGTTGGTTTGAAAA+AGG - chr6.4:17599040-17599059 MS.gene41989:CDS 25.0%
!!! CGCAAAAAGGTATTAAATAT+AGG - chr6.4:17599512-17599531 MS.gene41989:CDS 25.0%
AAAATCTAAAGGAGGATATG+CGG + chr6.4:17599770-17599789 None:intergenic 30.0%
ACATCCAATGCAAAATCTAA+AGG + chr6.4:17599781-17599800 None:intergenic 30.0%
AGAAGAAGTGAATAACAGTA+GGG - chr6.4:17598577-17598596 MS.gene41989:CDS 30.0%
CAAACAATATTCTTGTTCTC+CGG + chr6.4:17598469-17598488 None:intergenic 30.0%
CCATTGCAAATAACATAAGA+TGG + chr6.4:17599903-17599922 None:intergenic 30.0%
GACTTATTCAAAAGTCGATT+TGG + chr6.4:17599697-17599716 None:intergenic 30.0%
GCAATATGAGATTGATGTTA+GGG - chr6.4:17598940-17598959 MS.gene41989:CDS 30.0%
TCATCAGAAATGACATACAT+AGG + chr6.4:17599184-17599203 None:intergenic 30.0%
TGCAATATGAGATTGATGTT+AGG - chr6.4:17598939-17598958 MS.gene41989:CDS 30.0%
TTAGATCTAATGAGACTAGT+TGG - chr6.4:17599545-17599564 MS.gene41989:CDS 30.0%
TTCTCTATGATCATGGTAAT+TGG - chr6.4:17599869-17599888 MS.gene41989:CDS 30.0%
! ACTTTTATATGTGAGTTCAC+CGG - chr6.4:17599601-17599620 MS.gene41989:CDS 30.0%
! CAATTAGTTCTCTATGATCA+TGG - chr6.4:17599862-17599881 MS.gene41989:CDS 30.0%
! CCATCTTATGTTATTTGCAA+TGG - chr6.4:17599900-17599919 MS.gene41989:CDS 30.0%
! GGATATAATGATGATGATCA+AGG - chr6.4:17598833-17598852 MS.gene41989:CDS 30.0%
! GGTTTGAAAAAGGTATATCT+GGG - chr6.4:17599050-17599069 MS.gene41989:CDS 30.0%
! TAGATCTAATGAGACTAGTT+GGG - chr6.4:17599546-17599565 MS.gene41989:CDS 30.0%
! TGGTTTGAAAAAGGTATATC+TGG - chr6.4:17599049-17599068 MS.gene41989:CDS 30.0%
! TTTATGTTATCTAGGGTTCA+AGG - chr6.4:17599088-17599107 MS.gene41989:CDS 30.0%
!! AGAAACCCACTTTTACTATA+AGG + chr6.4:17599418-17599437 None:intergenic 30.0%
AAAATTATCTACTCTGGCCA+TGG - chr6.4:17598860-17598879 MS.gene41989:CDS 35.0%
AAATAATCAATCCCAGCTTG+TGG + chr6.4:17598755-17598774 None:intergenic 35.0%
AAATCTAAAGGAGGATATGC+GGG + chr6.4:17599769-17599788 None:intergenic 35.0%
AAATCTATGCAGAAGCTTAG+AGG - chr6.4:17598380-17598399 MS.gene41989:CDS 35.0%
AATAAGTCCACTCAAGAATG+GGG - chr6.4:17599709-17599728 MS.gene41989:CDS 35.0%
AATCTATGCAGAAGCTTAGA+GGG - chr6.4:17598381-17598400 MS.gene41989:CDS 35.0%
AGAAGTGAAATGTGTGTGAT+TGG - chr6.4:17598716-17598735 MS.gene41989:CDS 35.0%
ATATCACCAATACAAACACC+AGG + chr6.4:17598686-17598705 None:intergenic 35.0%
ATTGATGTTAGGGTTATTCG+AGG - chr6.4:17598950-17598969 MS.gene41989:CDS 35.0%
CAGAAGAAGTGAATAACAGT+AGG - chr6.4:17598576-17598595 MS.gene41989:CDS 35.0%
GAATAAGTCCACTCAAGAAT+GGG - chr6.4:17599708-17599727 MS.gene41989:CDS 35.0%
GATGGAGAGGAAAAATAAGA+GGG - chr6.4:17599330-17599349 MS.gene41989:CDS 35.0%
GGAAGATACTCAAATTGCAT+GGG + chr6.4:17599271-17599290 None:intergenic 35.0%
GGAGACAAAATTATCTACTC+TGG - chr6.4:17598854-17598873 MS.gene41989:CDS 35.0%
GTGTTGTCATTCATGATTGA+AGG + chr6.4:17599391-17599410 None:intergenic 35.0%
TAAGCATACTTGCTTCCTTA+AGG + chr6.4:17599138-17599157 None:intergenic 35.0%
TCCAATGCAAAATCTAAAGG+AGG + chr6.4:17599778-17599797 None:intergenic 35.0%
TGAATAAGTCCACTCAAGAA+TGG - chr6.4:17599707-17599726 MS.gene41989:CDS 35.0%
TGATGATATTTCCAATGGGA+AGG - chr6.4:17599198-17599217 MS.gene41989:CDS 35.0%
TGATGGAGAGGAAAAATAAG+AGG - chr6.4:17599329-17599348 MS.gene41989:CDS 35.0%
TGGTACTTCTACTACTAGTA+AGG - chr6.4:17598988-17599007 MS.gene41989:CDS 35.0%
TGTTATTCACTTCTTCTGTC+TGG + chr6.4:17598574-17598593 None:intergenic 35.0%
TTATAACAACAACACTCTGG+CGG - chr6.4:17598346-17598365 MS.gene41989:CDS 35.0%
TTTGATTCTATTCGTGTGTC+AGG - chr6.4:17598485-17598504 MS.gene41989:CDS 35.0%
! AGATCTAATGAGACTAGTTG+GGG - chr6.4:17599547-17599566 MS.gene41989:CDS 35.0%
! CATGCTAGTATGAGTTCTAA+TGG - chr6.4:17598776-17598795 MS.gene41989:CDS 35.0%
! CTTTTATATGTGAGTTCACC+GGG - chr6.4:17599602-17599621 MS.gene41989:CDS 35.0%
! GAAAAAGGTATATCTGGGTT+TGG - chr6.4:17599055-17599074 MS.gene41989:CDS 35.0%
! GAACAAACACATTTGGAGTT+GGG + chr6.4:17599843-17599862 None:intergenic 35.0%
! TAATACCTTTTTGCGTCACA+CGG + chr6.4:17599507-17599526 None:intergenic 35.0%
! TCCTCCTTTAGATTTTGCAT+TGG - chr6.4:17599774-17599793 MS.gene41989:CDS 35.0%
! TGAACAAACACATTTGGAGT+TGG + chr6.4:17599844-17599863 None:intergenic 35.0%
! TTAGGGTTATTCGAGGTTTT+CGG - chr6.4:17598957-17598976 MS.gene41989:CDS 35.0%
!! AATTTTGGAAAAGCTGCCTT+CGG + chr6.4:17599292-17599311 None:intergenic 35.0%
!! ATGTGTGTGATTGGTTTACA+CGG - chr6.4:17598725-17598744 MS.gene41989:CDS 35.0%
AAAATCATTGGTCCAGTTCC+TGG - chr6.4:17598665-17598684 MS.gene41989:CDS 40.0%
ACAACCACACTAGTAGCAAT+GGG + chr6.4:17598806-17598825 None:intergenic 40.0%
AGAGTTATGTTCACCATCCA+TGG + chr6.4:17599662-17599681 None:intergenic 40.0%
AGGATCATACTACCCATCTT+AGG + chr6.4:17599118-17599137 None:intergenic 40.0%
CAGCAGCTATCAAGTCATTT+CGG + chr6.4:17598604-17598623 None:intergenic 40.0%
CATTGGATGTATCAACGATG+AGG - chr6.4:17599791-17599810 MS.gene41989:CDS 40.0%
CGGAAGATACTCAAATTGCA+TGG + chr6.4:17599272-17599291 None:intergenic 40.0%
GAAGCAAGTATGCTTAAGAG+AGG - chr6.4:17599142-17599161 MS.gene41989:CDS 40.0%
GATGGGTAGTATGATCCTTA+AGG - chr6.4:17599120-17599139 MS.gene41989:CDS 40.0%
GCAATTTGAGTATCTTCCGA+AGG - chr6.4:17599273-17599292 MS.gene41989:CDS 40.0%
GTTCAAGGTCAACCTAAGAT+GGG - chr6.4:17599103-17599122 MS.gene41989:CDS 40.0%
TATAACAACAACACTCTGGC+GGG - chr6.4:17598347-17598366 MS.gene41989:CDS 40.0%
TCAAGACTAAGCTCTCTCAT+TGG + chr6.4:17599937-17599956 None:intergenic 40.0%
TCCAATGGGAAGGAGAATAT+CGG - chr6.4:17599208-17599227 MS.gene41989:CDS 40.0%
TGCGAAGGACAACTACAAAA+AGG + chr6.4:17599475-17599494 None:intergenic 40.0%
TGGGCTATGACTAATATAGC+TGG + chr6.4:17599824-17599843 None:intergenic 40.0%
! ATTCGAGGTTTTCGGTATGA+AGG - chr6.4:17598965-17598984 MS.gene41989:CDS 40.0%
! GAGGAAAAATAAGAGGGTGT+TGG - chr6.4:17599336-17599355 MS.gene41989:CDS 40.0%
! GCTGCTTTGATGAATGATCA+TGG - chr6.4:17598620-17598639 MS.gene41989:CDS 40.0%
!! AGAGAGCTTAGTCTTGATCA+TGG - chr6.4:17599940-17599959 MS.gene41989:CDS 40.0%
!! AGAGCTTAGTCTTGATCATG+GGG - chr6.4:17599942-17599961 MS.gene41989:CDS 40.0%
!! CTCTGAGGAAGCAAGAATTT+TGG + chr6.4:17599307-17599326 None:intergenic 40.0%
!! GAGAGCTTAGTCTTGATCAT+GGG - chr6.4:17599941-17599960 MS.gene41989:CDS 40.0%
!! GCAAGCGGAAATTTTAACCA+TGG - chr6.4:17599642-17599661 MS.gene41989:CDS 40.0%
!! GCGGAAATTTTAACCATGGA+TGG - chr6.4:17599646-17599665 MS.gene41989:CDS 40.0%
!! GTGGGTTTCTTTTAAAAGGG+AGG - chr6.4:17599428-17599447 MS.gene41989:CDS 40.0%
!!! TCTTTGGACCCTATTTTAGC+TGG - chr6.4:17599577-17599596 MS.gene41989:CDS 40.0%
ACTAGTGTGGTTGTGTCTGA+TGG - chr6.4:17598812-17598831 MS.gene41989:CDS 45.0%
AGAAACCGTGTGACGCAAAA+AGG - chr6.4:17599499-17599518 MS.gene41989:CDS 45.0%
AGACTAAGCTCTCTCATTGG+AGG + chr6.4:17599934-17599953 None:intergenic 45.0%
ATCATGGGGGTAGAATTGAC+TGG - chr6.4:17599956-17599975 MS.gene41989:CDS 45.0%
CAAATCACCCCATTCTTGAG+TGG + chr6.4:17599719-17599738 None:intergenic 45.0%
CACAACCACACTAGTAGCAA+TGG + chr6.4:17598807-17598826 None:intergenic 45.0%
CCAATACAAACACCAGGAAC+TGG + chr6.4:17598680-17598699 None:intergenic 45.0%
CCAGTTCCTGGTGTTTGTAT+TGG - chr6.4:17598677-17598696 MS.gene41989:CDS 45.0%
GACTAAGCTCTCTCATTGGA+GGG + chr6.4:17599933-17599952 None:intergenic 45.0%
GCATACTTGTCACCATAGCA+AGG + chr6.4:17598922-17598941 None:intergenic 45.0%
GGTTCAAGGTCAACCTAAGA+TGG - chr6.4:17599102-17599121 MS.gene41989:CDS 45.0%
TAGTTGGGGAGTTAGGTCTT+TGG - chr6.4:17599561-17599580 MS.gene41989:CDS 45.0%
TATGCGGGATGCACATGATT+AGG + chr6.4:17599754-17599773 None:intergenic 45.0%
TATTCGTGTGTCAGGTTTGC+TGG - chr6.4:17598493-17598512 MS.gene41989:CDS 45.0%
TCCGATATTCTCCTTCCCAT+TGG + chr6.4:17599212-17599231 None:intergenic 45.0%
! ATGAGACTAGTTGGGGAGTT+AGG - chr6.4:17599554-17599573 MS.gene41989:CDS 45.0%
! GAGTGTTGTGAATGCGTTGA+TGG - chr6.4:17599358-17599377 MS.gene41989:CDS 45.0%
! TTTTGTAACTCGTCGGGAAC+TGG + chr6.4:17598326-17598345 None:intergenic 45.0%
!! GAGCTTAGTCTTGATCATGG+GGG - chr6.4:17599943-17599962 MS.gene41989:CDS 45.0%
!!! TGTTTTGACTAGGGAGCAAG+CGG - chr6.4:17599627-17599646 MS.gene41989:CDS 45.0%
ACACGGTTTCTGCAATGCGA+AGG + chr6.4:17599490-17599509 None:intergenic 50.0%
CCACACTAGTAGCAATGGGT+AGG + chr6.4:17598802-17598821 None:intergenic 50.0%
CCTACCCATTGCTACTAGTG+TGG - chr6.4:17598799-17598818 MS.gene41989:CDS 50.0%
CTCCCTAGTCAAAACAAGCC+CGG + chr6.4:17599623-17599642 None:intergenic 50.0%
CTTGCTTCCTCAGAGCATGA+TGG - chr6.4:17599312-17599331 MS.gene41989:CDS 50.0%
GAAGCTTAGAGGGCAGAACA+AGG - chr6.4:17598391-17598410 MS.gene41989:CDS 50.0%
TACACGGTCAACCACAAGCT+GGG - chr6.4:17598741-17598760 MS.gene41989:CDS 50.0%
TGTGAAGCAGGACCAGAAGT+TGG - chr6.4:17598886-17598905 MS.gene41989:CDS 50.0%
TTACACGGTCAACCACAAGC+TGG - chr6.4:17598740-17598759 MS.gene41989:CDS 50.0%
TTCCTCTCCATCATGCTCTG+AGG + chr6.4:17599322-17599341 None:intergenic 50.0%
! CGAGGTTTTCGGTATGAAGG+TGG - chr6.4:17598968-17598987 MS.gene41989:CDS 50.0%
! TTCCTCAGAGCATGATGGAG+AGG - chr6.4:17599317-17599336 MS.gene41989:CDS 50.0%
!!! CACCGGGCTTGTTTTGACTA+GGG - chr6.4:17599618-17599637 MS.gene41989:CDS 50.0%
!!! TCACCGGGCTTGTTTTGACT+AGG - chr6.4:17599617-17599636 MS.gene41989:CDS 50.0%
CAGGACCAGAAGTTGGAACG+AGG - chr6.4:17598893-17598912 MS.gene41989:CDS 55.0%
CTCCGGACCATCTCACGATA+CGG + chr6.4:17598452-17598471 None:intergenic 55.0%
GGAACGAGGCAACCTTGCTA+TGG - chr6.4:17598907-17598926 MS.gene41989:CDS 55.0%
GGACCATCTCACGATACGGA+CGG + chr6.4:17598448-17598467 None:intergenic 55.0%
GGTCCTGCTTCACATCACCA+TGG + chr6.4:17598880-17598899 None:intergenic 55.0%
GGTTGCCTCGTTCCAACTTC+TGG + chr6.4:17598901-17598920 None:intergenic 55.0%
GTCCGTATCGTGAGATGGTC+CGG - chr6.4:17598447-17598466 MS.gene41989:CDS 55.0%
TCACCGTCCGTATCGTGAGA+TGG - chr6.4:17598442-17598461 MS.gene41989:CDS 55.0%
! TGGCCATGGTGATGTGAAGC+AGG - chr6.4:17598874-17598893 MS.gene41989:CDS 55.0%
ACGATGGCGCGCGATATGGA+AGG + chr6.4:17598302-17598321 None:intergenic 60.0%
CGATGGCGCGCGATATGGAA+GGG + chr6.4:17598301-17598320 None:intergenic 60.0%
CTCGTCGGGAACTGGAACGA+TGG + chr6.4:17598318-17598337 None:intergenic 60.0%
TGGAACGATGGCGCGCGATA+TGG + chr6.4:17598306-17598325 None:intergenic 60.0%
! GGAGCTTGTTCGCACTGCGA+TGG - chr6.4:17598412-17598431 MS.gene41989:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.4 gene 17598278 17599996 17598278 ID=MS.gene41989
chr6.4 mRNA 17598278 17599996 17598278 ID=MS.gene41989.t1;Parent=MS.gene41989
chr6.4 exon 17598278 17599996 17598278 ID=MS.gene41989.t1.exon1;Parent=MS.gene41989.t1
chr6.4 CDS 17598278 17599996 17598278 ID=cds.MS.gene41989.t1;Parent=MS.gene41989.t1
Gene Sequence

>MS.gene41989

ATGTATTTTCAAAATTCAAACCCTTCCATATCGCGCGCCATCGTTCCAGTTCCCGACGAGTTACAAAATTATAACAACAACACTCTGGCGGGAAAAGCTTCAAAATCTATGCAGAAGCTTAGAGGGCAGAACAAGGAGCTTGTTCGCACTGCGATGGATGCAGATCACCGTCCGTATCGTGAGATGGTCCGGAGAACAAGAATATTGTTTGATTCTATTCGTGTGTCAGGTTTGCTGGAAGAAGAGAATAATCGTAAGAACAAAAGGTATTTGAAAGCTTATTCTTTGTTGAACCAGACAGAAGAAGTGAATAACAGTAGGGTCCGAAATGACTTGATAGCTGCTGCTTTGATGAATGATCATGGTATGTATTTGTATCTTGATAAGAAAATCATTGGTCCAGTTCCTGGTGTTTGTATTGGTGATATTTTTCTCTATAGAAGTGAAATGTGTGTGATTGGTTTACACGGTCAACCACAAGCTGGGATTGATTATTTACATGCTAGTATGAGTTCTAATGGCCTACCCATTGCTACTAGTGTGGTTGTGTCTGATGGATATAATGATGATGATCAAGGAGACAAAATTATCTACTCTGGCCATGGTGATGTGAAGCAGGACCAGAAGTTGGAACGAGGCAACCTTGCTATGGTGACAAGTATGCAATATGAGATTGATGTTAGGGTTATTCGAGGTTTTCGGTATGAAGGTGGTACTTCTACTACTAGTAAGGTTTTTGTTTATGATGGCTTGTATAAGATAATTGAATGTTGGTTTGAAAAAGGTATATCTGGGTTTGGTGTTTATAAGTTTATGTTATCTAGGGTTCAAGGTCAACCTAAGATGGGTAGTATGATCCTTAAGGAAGCAAGTATGCTTAAGAGAGGCCAATTATGTTCTAATCCTATGTATGTCATTTCTGATGATATTTCCAATGGGAAGGAGAATATCGGAGTGAGACTATATAATGACATTGACAGTGATCGCTATCCCATGCAATTTGAGTATCTTCCGAAGGCAGCTTTTCCAAAATTCTTGCTTCCTCAGAGCATGATGGAGAGGAAAAATAAGAGGGTGTTGGAGTGTTGTGAATGCGTTGATGGATGTTTTCCTTCAATCATGAATGACAACACTTTACCTTATAGTAAAAGTGGGTTTCTTTTAAAAGGGAGGTCATTAATTTATGAATGCGGTCCTTTTTGTAGTTGTCCTTCGCATTGCAGAAACCGTGTGACGCAAAAAGGTATTAAATATAGGTTGGAAGTGTTTAGATCTAATGAGACTAGTTGGGGAGTTAGGTCTTTGGACCCTATTTTAGCTGGAACTTTTATATGTGAGTTCACCGGGCTTGTTTTGACTAGGGAGCAAGCGGAAATTTTAACCATGGATGGTGAACATAACTCTTCGATGATATATCCAAATCGACTTTTGAATAAGTCCACTCAAGAATGGGGTGATTTGTCGATGATAGATCCTAATCATGTGCATCCCGCATATCCTCCTTTAGATTTTGCATTGGATGTATCAACGATGAGGAATGTTGCCAGCTATATTAGTCATAGCCCAACTCCAAATGTGTTTGTTCAATTAGTTCTCTATGATCATGGTAATTGGATGTTTCCCCATCTTATGTTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGCTTAGTCTTGATCATGGGGGTAGAATTGACTGGAAAGCTCTCGATACGTAA
Protein sequence

>MS.gene41989.t1

MYFQNSNPSISRAIVPVPDELQNYNNNTLAGKASKSMQKLRGQNKELVRTAMDADHRPYREMVRRTRILFDSIRVSGLLEEENNRKNKRYLKAYSLLNQTEEVNNSRVRNDLIAAALMNDHGMYLYLDKKIIGPVPGVCIGDIFLYRSEMCVIGLHGQPQAGIDYLHASMSSNGLPIATSVVVSDGYNDDDQGDKIIYSGHGDVKQDQKLERGNLAMVTSMQYEIDVRVIRGFRYEGGTSTTSKVFVYDGLYKIIECWFEKGISGFGVYKFMLSRVQGQPKMGSMILKEASMLKRGQLCSNPMYVISDDISNGKENIGVRLYNDIDSDRYPMQFEYLPKAAFPKFLLPQSMMERKNKRVLECCECVDGCFPSIMNDNTLPYSKSGFLLKGRSLIYECGPFCSCPSHCRNRVTQKGIKYRLEVFRSNETSWGVRSLDPILAGTFICEFTGLVLTREQAEILTMDGEHNSSMIYPNRLLNKSTQEWGDLSMIDPNHVHPAYPPLDFALDVSTMRNVASYISHSPTPNVFVQLVLYDHGNWMFPHLMLFAMENIPPMRELSLDHGGRIDWKALDT