Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42002.t1 | KEH26068.1 | 82 | 206 | 34 | 1 | 2 | 207 | 28 | 230 | 1.30E-88 | 335.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42002.t1 | Q8S9H7 | 53.2 | 47 | 22 | 0 | 81 | 127 | 132 | 178 | 5.3e-09 | 62.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42002.t1 | A0A072UAF3 | 82.0 | 206 | 34 | 1 | 2 | 207 | 28 | 230 | 9.7e-89 | 335.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene42002.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42002.t1 | MTR_6g043480 | 84.951 | 206 | 28 | 1 | 2 | 207 | 28 | 230 | 1.87e-117 | 333 |
MS.gene42002.t1 | MTR_6g043490 | 84.951 | 206 | 28 | 1 | 2 | 207 | 28 | 230 | 8.57e-116 | 329 |
MS.gene42002.t1 | MTR_8g072990 | 63.677 | 223 | 56 | 5 | 1 | 206 | 27 | 241 | 7.39e-89 | 261 |
MS.gene42002.t1 | MTR_8g073050 | 57.488 | 207 | 77 | 7 | 2 | 207 | 28 | 224 | 1.42e-60 | 189 |
MS.gene42002.t1 | MTR_5g027570 | 35.789 | 95 | 53 | 2 | 65 | 154 | 71 | 162 | 1.02e-11 | 62.4 |
MS.gene42002.t1 | MTR_5g081860 | 39.744 | 78 | 42 | 2 | 81 | 158 | 125 | 197 | 1.74e-11 | 62.0 |
MS.gene42002.t1 | MTR_1g048660 | 47.170 | 53 | 28 | 0 | 82 | 134 | 13 | 65 | 2.35e-11 | 58.5 |
MS.gene42002.t1 | MTR_4g111975 | 36.250 | 80 | 42 | 2 | 79 | 153 | 136 | 211 | 2.40e-11 | 62.0 |
MS.gene42002.t1 | MTR_3g462790 | 51.064 | 47 | 23 | 0 | 81 | 127 | 147 | 193 | 3.61e-11 | 61.6 |
MS.gene42002.t1 | MTR_5g069710 | 51.064 | 47 | 23 | 0 | 81 | 127 | 132 | 178 | 3.72e-11 | 61.6 |
MS.gene42002.t1 | MTR_8g063870 | 31.000 | 100 | 52 | 1 | 83 | 165 | 94 | 193 | 5.66e-11 | 60.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene42002.t1 | AT5G58900 | 51.020 | 49 | 24 | 0 | 79 | 127 | 139 | 187 | 1.18e-11 | 62.8 |
MS.gene42002.t1 | AT2G38090 | 41.176 | 68 | 36 | 1 | 79 | 146 | 139 | 202 | 2.12e-11 | 62.0 |
MS.gene42002.t1 | AT3G11280 | 39.683 | 63 | 34 | 1 | 81 | 143 | 127 | 185 | 4.39e-11 | 60.8 |
MS.gene42002.t1 | AT3G11280 | 39.683 | 63 | 34 | 1 | 81 | 143 | 127 | 185 | 4.39e-11 | 60.8 |
MS.gene42002.t1 | AT5G05790 | 42.857 | 56 | 32 | 0 | 73 | 128 | 123 | 178 | 4.87e-11 | 60.8 |
MS.gene42002.t1 | AT5G05790 | 42.857 | 56 | 32 | 0 | 73 | 128 | 123 | 178 | 4.87e-11 | 60.8 |
MS.gene42002.t1 | AT1G49010 | 39.394 | 66 | 36 | 1 | 81 | 146 | 134 | 195 | 7.03e-11 | 60.8 |
MS.gene42002.t1 | AT5G01200 | 47.692 | 65 | 29 | 2 | 79 | 142 | 144 | 204 | 9.72e-11 | 60.1 |
Find 71 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCATAAAATGTTGGAACTTC+TGG | 0.186491 | 6.4:-17402271 | None:intergenic |
GTAGAAACATGGTCAAAATT+AGG | 0.206701 | 6.4:-17401203 | None:intergenic |
ACACATATGTGCATGGTTTA+AGG | 0.242121 | 6.4:+17402185 | MS.gene42002:CDS |
ACCACCATGCGTGGCAGGTT+GGG | 0.256884 | 6.4:-17401339 | None:intergenic |
CCGATACCAAACTACTTTGT+TGG | 0.348196 | 6.4:+17401259 | MS.gene42002:CDS |
GTTGATTTGGAACTTCGTTT+AGG | 0.363323 | 6.4:+17402382 | MS.gene42002:CDS |
TAGAAACATGGTCAAAATTA+GGG | 0.380235 | 6.4:-17401202 | None:intergenic |
ACCATGCGCATATATCCATT+TGG | 0.401346 | 6.4:-17401416 | None:intergenic |
GTGATGGGGATGATTAAGTA+TGG | 0.403039 | 6.4:+17402064 | MS.gene42002:CDS |
TTGCTTAGCTTATTAGTGAT+GGG | 0.415846 | 6.4:+17402049 | MS.gene42002:intron |
TGGTCATGGAGAAGTTGATT+TGG | 0.426283 | 6.4:+17402369 | MS.gene42002:CDS |
GCTATGCCACTAGCTTCTTC+AGG | 0.427403 | 6.4:+17402152 | MS.gene42002:CDS |
GTGGTACCAACAAAGTAGTT+TGG | 0.427880 | 6.4:-17401265 | None:intergenic |
GTCGGAGAACCCAAGCAATT+AGG | 0.428183 | 6.4:-17401364 | None:intergenic |
CCACCATGCGTGGCAGGTTG+GGG | 0.429517 | 6.4:-17401338 | None:intergenic |
TACCACCATGCGTGGCAGGT+TGG | 0.432276 | 6.4:-17401340 | None:intergenic |
TTAAGTATGGAAAAGGGAAA+TGG | 0.433708 | 6.4:+17402077 | MS.gene42002:CDS |
ATGGTGGTAGCCTAATTGCT+TGG | 0.435858 | 6.4:+17401354 | MS.gene42002:CDS |
AATGGCACGGTGTCTGATCT+AGG | 0.437577 | 6.4:-17401392 | None:intergenic |
GGGATGATTAAGTATGGAAA+AGG | 0.439099 | 6.4:+17402070 | MS.gene42002:CDS |
CCATGCGCATATATCCATTT+GGG | 0.444107 | 6.4:-17401415 | None:intergenic |
ATGTGCATGGTTTAAGGAAA+AGG | 0.449777 | 6.4:+17402191 | MS.gene42002:CDS |
TGGTGGTAGCCTAATTGCTT+GGG | 0.450675 | 6.4:+17401355 | MS.gene42002:CDS |
CGTGGCAGGTTGGGGCCAAC+TGG | 0.450946 | 6.4:-17401330 | None:intergenic |
TTTGCTTAGCTTATTAGTGA+TGG | 0.465827 | 6.4:+17402048 | MS.gene42002:intron |
CCTGTTGTTTATGTTGGTCA+TGG | 0.470311 | 6.4:+17402355 | MS.gene42002:CDS |
AGGCTACCACCATGCGTGGC+AGG | 0.474105 | 6.4:-17401344 | None:intergenic |
TGGGTGTGTCCTTGAGGAGT+TGG | 0.476766 | 6.4:-17401287 | None:intergenic |
ACTCTTCCTGTTGTTTATGT+TGG | 0.477275 | 6.4:+17402349 | MS.gene42002:CDS |
TAGTGATTCGAGGGGACTCA+TGG | 0.480822 | 6.4:-17401307 | None:intergenic |
CCATGACCAACATAAACAAC+AGG | 0.483887 | 6.4:-17402355 | None:intergenic |
TGGTCAAAATTAGGGATCAT+TGG | 0.484624 | 6.4:-17401194 | None:intergenic |
AAACCATGCACATATGTGTC+TGG | 0.497935 | 6.4:-17402181 | None:intergenic |
TGCTTAGCTTATTAGTGATG+GGG | 0.500061 | 6.4:+17402050 | MS.gene42002:intron |
ATGGTTTAAGGAAAAGGAAA+AGG | 0.505645 | 6.4:+17402197 | MS.gene42002:CDS |
AGTGCTAGCTTCATAGTTGT+TGG | 0.507530 | 6.4:-17402320 | None:intergenic |
GACTCATGGGTGTGTCCTTG+AGG | 0.515070 | 6.4:-17401293 | None:intergenic |
CGCATATATCCATTTGGGAA+TGG | 0.519064 | 6.4:-17401410 | None:intergenic |
GGCCAACTGGTAGTGATTCG+AGG | 0.525016 | 6.4:-17401317 | None:intergenic |
GATATATGCGCATGGTACCT+TGG | 0.528852 | 6.4:+17401423 | MS.gene42002:CDS |
TGGCCCCAACCTGCCACGCA+TGG | 0.536871 | 6.4:+17401335 | MS.gene42002:CDS |
TCGACATGGTGGTGGAGATA+AGG | 0.542804 | 6.4:-17401230 | None:intergenic |
GACACCGTGCCATTCCCAAA+TGG | 0.542841 | 6.4:+17401401 | MS.gene42002:CDS |
GCTTCTCCTCCATAAAATGT+TGG | 0.545997 | 6.4:-17402280 | None:intergenic |
GCATAGCTTTGAACTTGTTG+TGG | 0.550543 | 6.4:-17402136 | None:intergenic |
GGATGATTAAGTATGGAAAA+GGG | 0.561038 | 6.4:+17402071 | MS.gene42002:CDS |
GCCAACTGGTAGTGATTCGA+GGG | 0.562803 | 6.4:-17401316 | None:intergenic |
GTGTGTCCTTGAGGAGTTGG+TGG | 0.568508 | 6.4:-17401284 | None:intergenic |
CCAACAAAGTAGTTTGGTAT+CGG | 0.568651 | 6.4:-17401259 | None:intergenic |
GGTGGTGTTCGACATGGTGG+TGG | 0.569038 | 6.4:-17401238 | None:intergenic |
TTGGTACCACCAACTCCTCA+AGG | 0.570569 | 6.4:+17401278 | MS.gene42002:CDS |
TGTTAACAATGATCTTGCAA+AGG | 0.578401 | 6.4:+17402231 | MS.gene42002:CDS |
GGTATCGGTGGTGTTCGACA+TGG | 0.578416 | 6.4:-17401244 | None:intergenic |
CCCCAACCTGCCACGCATGG+TGG | 0.582958 | 6.4:+17401338 | MS.gene42002:CDS |
ATGGTGGTGGAGATAAGGAT+TGG | 0.589002 | 6.4:-17401225 | None:intergenic |
AGTGATTCGAGGGGACTCAT+GGG | 0.590746 | 6.4:-17401306 | None:intergenic |
TCATGCTCTAATTGACTCCA+AGG | 0.607835 | 6.4:-17401440 | None:intergenic |
CCCAAATGGATATATGCGCA+TGG | 0.609887 | 6.4:+17401415 | MS.gene42002:CDS |
CATGCACATATGTGTCTGGT+AGG | 0.610902 | 6.4:-17402177 | None:intergenic |
ATCGGTGGTGTTCGACATGG+TGG | 0.615063 | 6.4:-17401241 | None:intergenic |
AATTAGGCTACCACCATGCG+TGG | 0.619663 | 6.4:-17401348 | None:intergenic |
ACAAAGTAGTTTGGTATCGG+TGG | 0.636437 | 6.4:-17401256 | None:intergenic |
ACGGTGTCTGATCTAGGTAA+CGG | 0.636630 | 6.4:-17401386 | None:intergenic |
CTACCAGACACATATGTGCA+TGG | 0.648995 | 6.4:+17402178 | MS.gene42002:CDS |
ATAAACAACAGGAAGAGTCG+TGG | 0.655450 | 6.4:-17402344 | None:intergenic |
CCCCTCGAATCACTACCAGT+TGG | 0.659827 | 6.4:+17401315 | MS.gene42002:CDS |
ATATCCATTTGGGAATGGCA+CGG | 0.659849 | 6.4:-17401405 | None:intergenic |
TGTCTGATCTAGGTAACGGT+CGG | 0.670533 | 6.4:-17401382 | None:intergenic |
GATAAGGATTGGTAGAAACA+TGG | 0.670885 | 6.4:-17401214 | None:intergenic |
TAGGTACCTGAAGAAGCTAG+TGG | 0.684270 | 6.4:-17402158 | None:intergenic |
CCAACTGGTAGTGATTCGAG+GGG | 0.784198 | 6.4:-17401315 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTTGAATAATAAATTTCA+AGG | - | chr6.4:17401948-17401967 | None:intergenic | 10.0% |
!! | ATTTGAATAATAAATTTCAA+GGG | - | chr6.4:17401947-17401966 | None:intergenic | 10.0% |
!! | TAAAAAATGATCAATAAATT+TGG | - | chr6.4:17401768-17401787 | None:intergenic | 10.0% |
!!! | CAATAAAAAAAAAAGATTTT+AGG | - | chr6.4:17401483-17401502 | None:intergenic | 10.0% |
!! | TTTGAATAATAAATTTCAAG+GGG | - | chr6.4:17401946-17401965 | None:intergenic | 15.0% |
!!! | GGTTATTAGATAATAAATTT+TGG | + | chr6.4:17401874-17401893 | MS.gene42002:intron | 15.0% |
!! | AATACGAGAGAAAAAAAAAT+TGG | - | chr6.4:17401602-17401621 | None:intergenic | 20.0% |
!! | ATACGAGAGAAAAAAAAATT+GGG | - | chr6.4:17401601-17401620 | None:intergenic | 20.0% |
! | TACGAGAGAAAAAAAAATTG+GGG | - | chr6.4:17401600-17401619 | None:intergenic | 25.0% |
! | TAGAAACATGGTCAAAATTA+GGG | - | chr6.4:17401205-17401224 | None:intergenic | 25.0% |
! | TATTATCTAATAACCTACGA+AGG | - | chr6.4:17401869-17401888 | None:intergenic | 25.0% |
! | TCTATGATAAATTGTGAGTT+TGG | - | chr6.4:17401997-17402016 | None:intergenic | 25.0% |
!! | TGCCAGAAAATTTGAAATAA+TGG | - | chr6.4:17401686-17401705 | None:intergenic | 25.0% |
ATAACCTACGAAGGTTTAAT+TGG | - | chr6.4:17401860-17401879 | None:intergenic | 30.0% | |
ATGGTTTAAGGAAAAGGAAA+AGG | + | chr6.4:17402197-17402216 | MS.gene42002:CDS | 30.0% | |
GGATGATTAAGTATGGAAAA+GGG | + | chr6.4:17402071-17402090 | MS.gene42002:CDS | 30.0% | |
GTAGAAACATGGTCAAAATT+AGG | - | chr6.4:17401206-17401225 | None:intergenic | 30.0% | |
TGTTAACAATGATCTTGCAA+AGG | + | chr6.4:17402231-17402250 | MS.gene42002:CDS | 30.0% | |
TTAAGTATGGAAAAGGGAAA+TGG | + | chr6.4:17402077-17402096 | MS.gene42002:CDS | 30.0% | |
TTGAAATAATGGCCAACATA+TGG | - | chr6.4:17401675-17401694 | None:intergenic | 30.0% | |
TTGCTTAGCTTATTAGTGAT+GGG | + | chr6.4:17402049-17402068 | MS.gene42002:intron | 30.0% | |
TTTGCTTAGCTTATTAGTGA+TGG | + | chr6.4:17402048-17402067 | MS.gene42002:intron | 30.0% | |
! | GGCCATTATTTCAAATTTTC+TGG | + | chr6.4:17401681-17401700 | MS.gene42002:intron | 30.0% |
AACTCCAATTAAACCTTCGT+AGG | + | chr6.4:17401853-17401872 | MS.gene42002:intron | 35.0% | |
ACACATATGTGCATGGTTTA+AGG | + | chr6.4:17402185-17402204 | MS.gene42002:CDS | 35.0% | |
ATGTGCATGGTTTAAGGAAA+AGG | + | chr6.4:17402191-17402210 | MS.gene42002:CDS | 35.0% | |
CCAACAAAGTAGTTTGGTAT+CGG | - | chr6.4:17401262-17401281 | None:intergenic | 35.0% | |
CCATAAAATGTTGGAACTTC+TGG | - | chr6.4:17402274-17402293 | None:intergenic | 35.0% | |
GGGATGATTAAGTATGGAAA+AGG | + | chr6.4:17402070-17402089 | MS.gene42002:CDS | 35.0% | |
TGCTTAGCTTATTAGTGATG+GGG | + | chr6.4:17402050-17402069 | MS.gene42002:intron | 35.0% | |
! | ACTCTTCCTGTTGTTTATGT+TGG | + | chr6.4:17402349-17402368 | MS.gene42002:CDS | 35.0% |
! | CCAGAAGTTCCAACATTTTA+TGG | + | chr6.4:17402271-17402290 | MS.gene42002:CDS | 35.0% |
! | GAAGTTCCAACATTTTATGG+AGG | + | chr6.4:17402274-17402293 | MS.gene42002:CDS | 35.0% |
! | GATAAGGATTGGTAGAAACA+TGG | - | chr6.4:17401217-17401236 | None:intergenic | 35.0% |
!! | GTTGATTTGGAACTTCGTTT+AGG | + | chr6.4:17402382-17402401 | MS.gene42002:CDS | 35.0% |
AAACCATGCACATATGTGTC+TGG | - | chr6.4:17402184-17402203 | None:intergenic | 40.0% | |
ACCATGCGCATATATCCATT+TGG | - | chr6.4:17401419-17401438 | None:intergenic | 40.0% | |
ATAAACAACAGGAAGAGTCG+TGG | - | chr6.4:17402347-17402366 | None:intergenic | 40.0% | |
ATATCCATTTGGGAATGGCA+CGG | - | chr6.4:17401408-17401427 | None:intergenic | 40.0% | |
CCAACATATGGTGTAGAAGT+AGG | - | chr6.4:17401663-17401682 | None:intergenic | 40.0% | |
CCATGACCAACATAAACAAC+AGG | - | chr6.4:17402358-17402377 | None:intergenic | 40.0% | |
CCATGCGCATATATCCATTT+GGG | - | chr6.4:17401418-17401437 | None:intergenic | 40.0% | |
CCGATACCAAACTACTTTGT+TGG | + | chr6.4:17401259-17401278 | MS.gene42002:CDS | 40.0% | |
CCTACTTCTACACCATATGT+TGG | + | chr6.4:17401660-17401679 | MS.gene42002:intron | 40.0% | |
CGCATATATCCATTTGGGAA+TGG | - | chr6.4:17401413-17401432 | None:intergenic | 40.0% | |
GCTTCTCCTCCATAAAATGT+TGG | - | chr6.4:17402283-17402302 | None:intergenic | 40.0% | |
GTGGTACCAACAAAGTAGTT+TGG | - | chr6.4:17401268-17401287 | None:intergenic | 40.0% | |
! | ACAAAGTAGTTTGGTATCGG+TGG | - | chr6.4:17401259-17401278 | None:intergenic | 40.0% |
! | AGTGCTAGCTTCATAGTTGT+TGG | - | chr6.4:17402323-17402342 | None:intergenic | 40.0% |
! | CCTGTTGTTTATGTTGGTCA+TGG | + | chr6.4:17402355-17402374 | MS.gene42002:CDS | 40.0% |
! | GTGATGGGGATGATTAAGTA+TGG | + | chr6.4:17402064-17402083 | MS.gene42002:CDS | 40.0% |
! | TCATGCTCTAATTGACTCCA+AGG | - | chr6.4:17401443-17401462 | None:intergenic | 40.0% |
! | TGGTCATGGAGAAGTTGATT+TGG | + | chr6.4:17402369-17402388 | MS.gene42002:CDS | 40.0% |
!! | GCATAGCTTTGAACTTGTTG+TGG | - | chr6.4:17402139-17402158 | None:intergenic | 40.0% |
ACGGTGTCTGATCTAGGTAA+CGG | - | chr6.4:17401389-17401408 | None:intergenic | 45.0% | |
ATGGTGGTAGCCTAATTGCT+TGG | + | chr6.4:17401354-17401373 | MS.gene42002:CDS | 45.0% | |
CATGCACATATGTGTCTGGT+AGG | - | chr6.4:17402180-17402199 | None:intergenic | 45.0% | |
CCCAAATGGATATATGCGCA+TGG | + | chr6.4:17401415-17401434 | MS.gene42002:CDS | 45.0% | |
CTACCAGACACATATGTGCA+TGG | + | chr6.4:17402178-17402197 | MS.gene42002:CDS | 45.0% | |
GATATATGCGCATGGTACCT+TGG | + | chr6.4:17401423-17401442 | MS.gene42002:CDS | 45.0% | |
TAGGTACCTGAAGAAGCTAG+TGG | - | chr6.4:17402161-17402180 | None:intergenic | 45.0% | |
TGGTGGTAGCCTAATTGCTT+GGG | + | chr6.4:17401355-17401374 | MS.gene42002:CDS | 45.0% | |
! | TGTCTGATCTAGGTAACGGT+CGG | - | chr6.4:17401385-17401404 | None:intergenic | 45.0% |
!! | ATGGTGGTGGAGATAAGGAT+TGG | - | chr6.4:17401228-17401247 | None:intergenic | 45.0% |
AATGGCACGGTGTCTGATCT+AGG | - | chr6.4:17401395-17401414 | None:intergenic | 50.0% | |
AATTAGGCTACCACCATGCG+TGG | - | chr6.4:17401351-17401370 | None:intergenic | 50.0% | |
AGTGATTCGAGGGGACTCAT+GGG | - | chr6.4:17401309-17401328 | None:intergenic | 50.0% | |
GTCGGAGAACCCAAGCAATT+AGG | - | chr6.4:17401367-17401386 | None:intergenic | 50.0% | |
TAGTGATTCGAGGGGACTCA+TGG | - | chr6.4:17401310-17401329 | None:intergenic | 50.0% | |
TTGGTACCACCAACTCCTCA+AGG | + | chr6.4:17401278-17401297 | MS.gene42002:CDS | 50.0% | |
! | CCAACTGGTAGTGATTCGAG+GGG | - | chr6.4:17401318-17401337 | None:intergenic | 50.0% |
! | GCCAACTGGTAGTGATTCGA+GGG | - | chr6.4:17401319-17401338 | None:intergenic | 50.0% |
! | GCTATGCCACTAGCTTCTTC+AGG | + | chr6.4:17402152-17402171 | MS.gene42002:CDS | 50.0% |
!! | TCGACATGGTGGTGGAGATA+AGG | - | chr6.4:17401233-17401252 | None:intergenic | 50.0% |
ATCGGTGGTGTTCGACATGG+TGG | - | chr6.4:17401244-17401263 | None:intergenic | 55.0% | |
CCCCTCGAATCACTACCAGT+TGG | + | chr6.4:17401315-17401334 | MS.gene42002:CDS | 55.0% | |
GACTCATGGGTGTGTCCTTG+AGG | - | chr6.4:17401296-17401315 | None:intergenic | 55.0% | |
GTGTGTCCTTGAGGAGTTGG+TGG | - | chr6.4:17401287-17401306 | None:intergenic | 55.0% | |
TGGGTGTGTCCTTGAGGAGT+TGG | - | chr6.4:17401290-17401309 | None:intergenic | 55.0% | |
! | GACACCGTGCCATTCCCAAA+TGG | + | chr6.4:17401401-17401420 | MS.gene42002:CDS | 55.0% |
! | GGCCAACTGGTAGTGATTCG+AGG | - | chr6.4:17401320-17401339 | None:intergenic | 55.0% |
!! | GGTATCGGTGGTGTTCGACA+TGG | - | chr6.4:17401247-17401266 | None:intergenic | 55.0% |
ACCACCATGCGTGGCAGGTT+GGG | - | chr6.4:17401342-17401361 | None:intergenic | 60.0% | |
GGTGGTGTTCGACATGGTGG+TGG | - | chr6.4:17401241-17401260 | None:intergenic | 60.0% | |
TACCACCATGCGTGGCAGGT+TGG | - | chr6.4:17401343-17401362 | None:intergenic | 60.0% | |
AGGCTACCACCATGCGTGGC+AGG | - | chr6.4:17401347-17401366 | None:intergenic | 65.0% | |
CCACCATGCGTGGCAGGTTG+GGG | - | chr6.4:17401341-17401360 | None:intergenic | 65.0% | |
CCCCAACCTGCCACGCATGG+TGG | + | chr6.4:17401338-17401357 | MS.gene42002:CDS | 70.0% | |
TGGCCCCAACCTGCCACGCA+TGG | + | chr6.4:17401335-17401354 | MS.gene42002:CDS | 70.0% | |
! | CGTGGCAGGTTGGGGCCAAC+TGG | - | chr6.4:17401333-17401352 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.4 | gene | 17401197 | 17402414 | 17401197 | ID=MS.gene42002 |
chr6.4 | mRNA | 17401197 | 17402414 | 17401197 | ID=MS.gene42002.t1;Parent=MS.gene42002 |
chr6.4 | exon | 17401197 | 17401462 | 17401197 | ID=MS.gene42002.t1.exon1;Parent=MS.gene42002.t1 |
chr6.4 | CDS | 17401197 | 17401462 | 17401197 | ID=cds.MS.gene42002.t1;Parent=MS.gene42002.t1 |
chr6.4 | exon | 17402057 | 17402414 | 17402057 | ID=MS.gene42002.t1.exon2;Parent=MS.gene42002.t1 |
chr6.4 | CDS | 17402057 | 17402414 | 17402057 | ID=cds.MS.gene42002.t1;Parent=MS.gene42002.t1 |
Gene Sequence |
Protein sequence |