Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42004.t1 | KEH26068.1 | 87 | 230 | 29 | 1 | 1 | 229 | 1 | 230 | 3.80E-108 | 401 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42004.t1 | Q8S9H7 | 45.0 | 60 | 33 | 0 | 93 | 152 | 119 | 178 | 6.9e-10 | 65.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42004.t1 | A0A072UAF3 | 87.0 | 230 | 29 | 1 | 1 | 229 | 1 | 230 | 2.7e-108 | 401.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42004.t1 | TF | MYB-related |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42004.t1 | MTR_6g043490 | 89.130 | 230 | 24 | 1 | 1 | 229 | 1 | 230 | 1.94e-130 | 367 |
| MS.gene42004.t1 | MTR_6g043480 | 84.783 | 230 | 34 | 1 | 1 | 229 | 1 | 230 | 1.39e-124 | 352 |
| MS.gene42004.t1 | MTR_8g072990 | 66.265 | 249 | 55 | 7 | 1 | 228 | 1 | 241 | 5.95e-99 | 288 |
| MS.gene42004.t1 | MTR_8g073050 | 55.365 | 233 | 91 | 8 | 1 | 229 | 1 | 224 | 8.16e-63 | 196 |
| MS.gene42004.t1 | MTR_5g027570 | 40.260 | 77 | 43 | 1 | 103 | 179 | 89 | 162 | 1.04e-12 | 65.5 |
| MS.gene42004.t1 | MTR_4g111975 | 37.037 | 81 | 42 | 2 | 103 | 178 | 135 | 211 | 2.82e-12 | 65.1 |
| MS.gene42004.t1 | MTR_5g081860 | 38.272 | 81 | 45 | 2 | 103 | 183 | 122 | 197 | 4.11e-12 | 64.3 |
| MS.gene42004.t1 | MTR_3g462790 | 48.000 | 50 | 26 | 0 | 103 | 152 | 144 | 193 | 6.29e-12 | 64.3 |
| MS.gene42004.t1 | MTR_1g048660 | 47.170 | 53 | 28 | 0 | 107 | 159 | 13 | 65 | 6.70e-12 | 60.1 |
| MS.gene42004.t1 | MTR_5g069710 | 48.000 | 50 | 26 | 0 | 103 | 152 | 129 | 178 | 6.84e-12 | 63.9 |
| MS.gene42004.t1 | MTR_7g067080 | 43.103 | 58 | 33 | 0 | 95 | 152 | 129 | 186 | 1.51e-11 | 63.2 |
| MS.gene42004.t1 | MTR_8g101650 | 36.486 | 74 | 42 | 1 | 99 | 172 | 98 | 166 | 2.08e-11 | 62.4 |
| MS.gene42004.t1 | MTR_2g100930 | 37.143 | 70 | 40 | 1 | 103 | 172 | 106 | 171 | 2.25e-11 | 62.8 |
| MS.gene42004.t1 | MTR_8g063870 | 31.000 | 100 | 52 | 1 | 108 | 190 | 94 | 193 | 2.39e-11 | 62.4 |
| MS.gene42004.t1 | MTR_1g111830 | 37.662 | 77 | 46 | 1 | 100 | 176 | 118 | 192 | 4.38e-11 | 61.2 |
| MS.gene42004.t1 | MTR_5g088010 | 33.824 | 68 | 45 | 0 | 101 | 168 | 55 | 122 | 5.64e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42004.t1 | AT5G58900 | 50.000 | 50 | 25 | 0 | 103 | 152 | 138 | 187 | 1.91e-12 | 65.5 |
| MS.gene42004.t1 | AT5G05790 | 42.424 | 66 | 37 | 1 | 88 | 153 | 114 | 178 | 1.95e-12 | 65.5 |
| MS.gene42004.t1 | AT5G05790 | 42.424 | 66 | 37 | 1 | 88 | 153 | 114 | 178 | 1.95e-12 | 65.5 |
| MS.gene42004.t1 | AT2G38090 | 37.500 | 80 | 46 | 1 | 92 | 171 | 127 | 202 | 5.02e-12 | 64.3 |
| MS.gene42004.t1 | AT1G49010 | 45.283 | 53 | 29 | 0 | 103 | 155 | 131 | 183 | 5.11e-12 | 64.7 |
| MS.gene42004.t1 | AT5G01200 | 46.575 | 73 | 33 | 3 | 97 | 167 | 136 | 204 | 6.58e-12 | 63.9 |
| MS.gene42004.t1 | AT3G11280 | 45.098 | 51 | 28 | 0 | 103 | 153 | 124 | 174 | 9.04e-12 | 63.5 |
| MS.gene42004.t1 | AT3G11280 | 45.098 | 51 | 28 | 0 | 103 | 153 | 124 | 174 | 9.04e-12 | 63.5 |
| MS.gene42004.t1 | AT5G08520 | 45.283 | 53 | 29 | 0 | 103 | 155 | 115 | 167 | 1.56e-11 | 63.2 |
| MS.gene42004.t1 | AT3G16350 | 40.625 | 64 | 38 | 0 | 89 | 152 | 120 | 183 | 3.25e-11 | 62.4 |
Find 74 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAAACATGGTCAAAATT+AGG | 0.177575 | 6.4:-17387312 | None:intergenic |
| CCATAAAATGTTGGAACTTC+TGG | 0.186491 | 6.4:-17388435 | None:intergenic |
| ACACATATGTGCATGGTTTA+AGG | 0.242121 | 6.4:+17388349 | MS.gene42004:CDS |
| ACCACCATGTGTGGTAGGTT+GGG | 0.275905 | 6.4:-17387448 | None:intergenic |
| TGGACATGGTGGTGAAGATT+AGG | 0.319556 | 6.4:-17387339 | None:intergenic |
| TTAAGTATGGAAAAGGTAAA+TGG | 0.336087 | 6.4:+17388241 | MS.gene42004:CDS |
| TAGAAACATGGTCAAAATTA+GGG | 0.358281 | 6.4:-17387311 | None:intergenic |
| AGTTGATGTGGAACTTCGTT+TGG | 0.364719 | 6.4:+17388536 | MS.gene42004:CDS |
| CTGTCTTAGCTTATTTGTGA+TGG | 0.386082 | 6.4:+17388212 | MS.gene42004:intron |
| TGTCTTAGCTTATTTGTGAT+GGG | 0.388102 | 6.4:+17388213 | MS.gene42004:intron |
| CGGACACCAAACTACTTTGT+TGG | 0.394254 | 6.4:+17387368 | MS.gene42004:CDS |
| GTGATGGGGATGATTAAGTA+TGG | 0.397169 | 6.4:+17388228 | MS.gene42004:CDS |
| GTCGGAGAACCCTTGCAATT+AGG | 0.416172 | 6.4:-17387473 | None:intergenic |
| CATGGTGCCTTGGAGTCAAT+TGG | 0.422876 | 6.4:+17387542 | MS.gene42004:CDS |
| TGTGGTAGGTTGGGGCCAAT+TGG | 0.422957 | 6.4:-17387439 | None:intergenic |
| GCTATGCTACTAGCTTCTTC+AGG | 0.423580 | 6.4:+17388316 | MS.gene42004:CDS |
| ACCATGCGCCTAGATGCATT+TGG | 0.430946 | 6.4:-17387525 | None:intergenic |
| GTAAGATCAGTGATCTCAAT+AGG | 0.430973 | 6.4:-17387234 | None:intergenic |
| TACCACCATGTGTGGTAGGT+TGG | 0.433974 | 6.4:-17387449 | None:intergenic |
| TGGGTGTGTCCTTGAGCTGT+TGG | 0.438020 | 6.4:-17387396 | None:intergenic |
| CCATGCGCCTAGATGCATTT+GGG | 0.445348 | 6.4:-17387524 | None:intergenic |
| ATGTGCATGGTTTAAGGAAA+AGG | 0.449777 | 6.4:+17388355 | MS.gene42004:CDS |
| GTTGATGTGGAACTTCGTTT+GGG | 0.455063 | 6.4:+17388537 | MS.gene42004:CDS |
| CCACCATGTGTGGTAGGTTG+GGG | 0.457806 | 6.4:-17387447 | None:intergenic |
| TAGTTTGGTGTCCGTGGAGT+TGG | 0.473185 | 6.4:-17387359 | None:intergenic |
| AGGGTTCTCCGACCGTTACC+TGG | 0.477357 | 6.4:+17387483 | MS.gene42004:CDS |
| GTGGTGCCAACAAAGTAGTT+TGG | 0.480218 | 6.4:-17387374 | None:intergenic |
| TGGTCAAAATTAGGGATCAT+TGG | 0.484624 | 6.4:-17387303 | None:intergenic |
| CATCTAGGCGCATGGTGCCT+TGG | 0.485387 | 6.4:+17387532 | MS.gene42004:CDS |
| AAACCATGCACATATGTGTC+TGG | 0.497935 | 6.4:-17388345 | None:intergenic |
| CAGTGATTCGAAAGGACTCA+TGG | 0.501395 | 6.4:-17387416 | None:intergenic |
| CCTTTCGAATCACTGCCAAT+TGG | 0.501751 | 6.4:+17387424 | MS.gene42004:CDS |
| TCAACTTCTCCATCACGAAC+AGG | 0.503208 | 6.4:-17388519 | None:intergenic |
| ATGGTTTAAGGAAAAGGAAA+AGG | 0.505645 | 6.4:+17388361 | MS.gene42004:CDS |
| CGCCTAGATGCATTTGGGAA+TGG | 0.509101 | 6.4:-17387519 | None:intergenic |
| GGGATGATTAAGTATGGAAA+AGG | 0.512581 | 6.4:+17388234 | MS.gene42004:CDS |
| GCATAGCTTTGAACTTGTTG+TGG | 0.515534 | 6.4:-17388300 | None:intergenic |
| TGCCATTCCCAAATGCATCT+AGG | 0.516055 | 6.4:+17387517 | MS.gene42004:CDS |
| GTCTTAGCTTATTTGTGATG+GGG | 0.518234 | 6.4:+17388214 | MS.gene42004:intron |
| ATGACTCTTCCTGTTCGTGA+TGG | 0.519035 | 6.4:+17388510 | MS.gene42004:CDS |
| GATGAAGATATGTGTGGTGA+TGG | 0.524416 | 6.4:-17387273 | None:intergenic |
| AATGGCATGGTGTCTGATCC+AGG | 0.529965 | 6.4:-17387501 | None:intergenic |
| GGTGTCCGTGGAGTTGGACA+TGG | 0.533444 | 6.4:-17387353 | None:intergenic |
| AGTGCTTGCATCATAGTTGT+TGG | 0.542629 | 6.4:-17388484 | None:intergenic |
| GCTTCTCCTCCATAAAATGT+TGG | 0.545997 | 6.4:-17388444 | None:intergenic |
| TTGGCACCACCAACAGCTCA+AGG | 0.554738 | 6.4:+17387387 | MS.gene42004:CDS |
| GTGTGTCCTTGAGCTGTTGG+TGG | 0.563165 | 6.4:-17387393 | None:intergenic |
| AAGATATGTGTGGTGATGGA+GGG | 0.566805 | 6.4:-17387269 | None:intergenic |
| ACAAAGTAGTTTGGTGTCCG+TGG | 0.571688 | 6.4:-17387365 | None:intergenic |
| CCCAAATGCATCTAGGCGCA+TGG | 0.572869 | 6.4:+17387524 | MS.gene42004:CDS |
| GAAGATATGTGTGGTGATGG+AGG | 0.578211 | 6.4:-17387270 | None:intergenic |
| TGTTAACAATGATCTTGCAA+AGG | 0.578401 | 6.4:+17388395 | MS.gene42004:CDS |
| AGGCTACCACCATGTGTGGT+AGG | 0.580621 | 6.4:-17387453 | None:intergenic |
| GTGGTGATGGAGGGGAGTCA+AGG | 0.585853 | 6.4:-17387260 | None:intergenic |
| ATGGTGGTAGCCTAATTGCA+AGG | 0.586684 | 6.4:+17387463 | MS.gene42004:CDS |
| TCATGATCCAATTGACTCCA+AGG | 0.595729 | 6.4:-17387549 | None:intergenic |
| ATCACGAACAGGAAGAGTCA+TGG | 0.604092 | 6.4:-17388508 | None:intergenic |
| TGGCCCCAACCTACCACACA+TGG | 0.605392 | 6.4:+17387444 | MS.gene42004:CDS |
| CATGCACATATGTGTCTGGT+AGG | 0.610902 | 6.4:-17388341 | None:intergenic |
| AGATATGTGTGGTGATGGAG+GGG | 0.610906 | 6.4:-17387268 | None:intergenic |
| CACCACCATGTCCAACTCCA+CGG | 0.614682 | 6.4:+17387348 | MS.gene42004:CDS |
| ATGGTGTCTGATCCAGGTAA+CGG | 0.615417 | 6.4:-17387495 | None:intergenic |
| AGTGATTCGAAAGGACTCAT+GGG | 0.623065 | 6.4:-17387415 | None:intergenic |
| TGGTGGTAGCCTAATTGCAA+GGG | 0.636313 | 6.4:+17387464 | MS.gene42004:CDS |
| CTACCAGACACATATGTGCA+TGG | 0.648995 | 6.4:+17388342 | MS.gene42004:CDS |
| CCAATTGGCAGTGATTCGAA+AGG | 0.649536 | 6.4:-17387424 | None:intergenic |
| GTCCGTGGAGTTGGACATGG+TGG | 0.658224 | 6.4:-17387350 | None:intergenic |
| TGTCTGATCCAGGTAACGGT+CGG | 0.658940 | 6.4:-17387491 | None:intergenic |
| AATTAGGCTACCACCATGTG+TGG | 0.664326 | 6.4:-17387457 | None:intergenic |
| AGATGCATTTGGGAATGGCA+TGG | 0.666400 | 6.4:-17387514 | None:intergenic |
| GATTAGGATTGATAGAAACA+TGG | 0.682877 | 6.4:-17387323 | None:intergenic |
| TCGTGATGGAGAAGTTGATG+TGG | 0.693551 | 6.4:+17388524 | MS.gene42004:CDS |
| CCCCAACCTACCACACATGG+TGG | 0.700133 | 6.4:+17387447 | MS.gene42004:CDS |
| GCATTAGATGAAGATATGTG+TGG | 0.745900 | 6.4:-17387279 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAAAAAAAATAGATTTA+AGG | - | chr6.4:17387592-17387611 | None:intergenic | 10.0% |
| !!! | TTTGAATAATAAATTTTAAG+GGG | - | chr6.4:17388110-17388129 | None:intergenic | 10.0% |
| !! | ATTAGAGAAAGAAAAAAATT+GGG | - | chr6.4:17387707-17387726 | None:intergenic | 15.0% |
| !! | TATTAGAGAAAGAAAAAAAT+TGG | - | chr6.4:17387708-17387727 | None:intergenic | 15.0% |
| !!! | TTTTATTTGATAATCTATGA+AGG | - | chr6.4:17388034-17388053 | None:intergenic | 15.0% |
| !! | TTAGAGAAAGAAAAAAATTG+GGG | - | chr6.4:17387706-17387725 | None:intergenic | 20.0% |
| ! | AGAAAAACTTGAAATAGAGA+TGG | + | chr6.4:17387851-17387870 | MS.gene42004:intron | 25.0% |
| ! | ATAGAAACATGGTCAAAATT+AGG | - | chr6.4:17387315-17387334 | None:intergenic | 25.0% |
| ! | TAGAAACATGGTCAAAATTA+GGG | - | chr6.4:17387314-17387333 | None:intergenic | 25.0% |
| ! | TTAAGTATGGAAAAGGTAAA+TGG | + | chr6.4:17388241-17388260 | MS.gene42004:CDS | 25.0% |
| ! | TTGAAATAATGGCCAATAAA+AGG | - | chr6.4:17387782-17387801 | None:intergenic | 25.0% |
| ATGGTTTAAGGAAAAGGAAA+AGG | + | chr6.4:17388361-17388380 | MS.gene42004:CDS | 30.0% | |
| GATTAGGATTGATAGAAACA+TGG | - | chr6.4:17387326-17387345 | None:intergenic | 30.0% | |
| TGTCTTAGCTTATTTGTGAT+GGG | + | chr6.4:17388213-17388232 | MS.gene42004:intron | 30.0% | |
| TGTTAACAATGATCTTGCAA+AGG | + | chr6.4:17388395-17388414 | MS.gene42004:CDS | 30.0% | |
| ! | CTCATTTCTACTCCTTTTAT+TGG | + | chr6.4:17387767-17387786 | MS.gene42004:intron | 30.0% |
| ! | TGCCAGAGAATTTGAAATAA+TGG | - | chr6.4:17387793-17387812 | None:intergenic | 30.0% |
| ACACATATGTGCATGGTTTA+AGG | + | chr6.4:17388349-17388368 | MS.gene42004:CDS | 35.0% | |
| ACCACACTCACAATTTATCA+TGG | + | chr6.4:17388157-17388176 | MS.gene42004:intron | 35.0% | |
| ATGTGCATGGTTTAAGGAAA+AGG | + | chr6.4:17388355-17388374 | MS.gene42004:CDS | 35.0% | |
| CCATAAAATGTTGGAACTTC+TGG | - | chr6.4:17388438-17388457 | None:intergenic | 35.0% | |
| CTGTCTTAGCTTATTTGTGA+TGG | + | chr6.4:17388212-17388231 | MS.gene42004:intron | 35.0% | |
| GCATTAGATGAAGATATGTG+TGG | - | chr6.4:17387282-17387301 | None:intergenic | 35.0% | |
| GGCCATTATTTCAAATTCTC+TGG | + | chr6.4:17387788-17387807 | MS.gene42004:intron | 35.0% | |
| GGGATGATTAAGTATGGAAA+AGG | + | chr6.4:17388234-17388253 | MS.gene42004:CDS | 35.0% | |
| GTAAGATCAGTGATCTCAAT+AGG | - | chr6.4:17387237-17387256 | None:intergenic | 35.0% | |
| GTCTTAGCTTATTTGTGATG+GGG | + | chr6.4:17388214-17388233 | MS.gene42004:intron | 35.0% | |
| TCCATGATAAATTGTGAGTG+TGG | - | chr6.4:17388161-17388180 | None:intergenic | 35.0% | |
| TGGTCAAAATTAGGGATCAT+TGG | - | chr6.4:17387306-17387325 | None:intergenic | 35.0% | |
| ! | CCAGAAGTTCCAACATTTTA+TGG | + | chr6.4:17388435-17388454 | MS.gene42004:CDS | 35.0% |
| ! | GAAGTTCCAACATTTTATGG+AGG | + | chr6.4:17388438-17388457 | MS.gene42004:CDS | 35.0% |
| AAACCATGCACATATGTGTC+TGG | - | chr6.4:17388348-17388367 | None:intergenic | 40.0% | |
| AGTGATTCGAAAGGACTCAT+GGG | - | chr6.4:17387418-17387437 | None:intergenic | 40.0% | |
| AGTGCTTGCATCATAGTTGT+TGG | - | chr6.4:17388487-17388506 | None:intergenic | 40.0% | |
| GATGAAGATATGTGTGGTGA+TGG | - | chr6.4:17387276-17387295 | None:intergenic | 40.0% | |
| GCTTCTCCTCCATAAAATGT+TGG | - | chr6.4:17388447-17388466 | None:intergenic | 40.0% | |
| GTTGATGTGGAACTTCGTTT+GGG | + | chr6.4:17388537-17388556 | MS.gene42004:CDS | 40.0% | |
| ! | AGTTGATGTGGAACTTCGTT+TGG | + | chr6.4:17388536-17388555 | MS.gene42004:CDS | 40.0% |
| ! | GTGATGGGGATGATTAAGTA+TGG | + | chr6.4:17388228-17388247 | MS.gene42004:CDS | 40.0% |
| ! | TCATGATCCAATTGACTCCA+AGG | - | chr6.4:17387552-17387571 | None:intergenic | 40.0% |
| !! | AAGATATGTGTGGTGATGGA+GGG | - | chr6.4:17387272-17387291 | None:intergenic | 40.0% |
| !! | GCATAGCTTTGAACTTGTTG+TGG | - | chr6.4:17388303-17388322 | None:intergenic | 40.0% |
| AATTAGGCTACCACCATGTG+TGG | - | chr6.4:17387460-17387479 | None:intergenic | 45.0% | |
| AGATGCATTTGGGAATGGCA+TGG | - | chr6.4:17387517-17387536 | None:intergenic | 45.0% | |
| ATCACGAACAGGAAGAGTCA+TGG | - | chr6.4:17388511-17388530 | None:intergenic | 45.0% | |
| ATGACTCTTCCTGTTCGTGA+TGG | + | chr6.4:17388510-17388529 | MS.gene42004:CDS | 45.0% | |
| ATGGTGGTAGCCTAATTGCA+AGG | + | chr6.4:17387463-17387482 | MS.gene42004:CDS | 45.0% | |
| ATGGTGTCTGATCCAGGTAA+CGG | - | chr6.4:17387498-17387517 | None:intergenic | 45.0% | |
| CAGTGATTCGAAAGGACTCA+TGG | - | chr6.4:17387419-17387438 | None:intergenic | 45.0% | |
| CATGCACATATGTGTCTGGT+AGG | - | chr6.4:17388344-17388363 | None:intergenic | 45.0% | |
| CCAATTGGCAGTGATTCGAA+AGG | - | chr6.4:17387427-17387446 | None:intergenic | 45.0% | |
| CCTTTCGAATCACTGCCAAT+TGG | + | chr6.4:17387424-17387443 | MS.gene42004:CDS | 45.0% | |
| CGGACACCAAACTACTTTGT+TGG | + | chr6.4:17387368-17387387 | MS.gene42004:CDS | 45.0% | |
| CTACCAGACACATATGTGCA+TGG | + | chr6.4:17388342-17388361 | MS.gene42004:CDS | 45.0% | |
| TCAACTTCTCCATCACGAAC+AGG | - | chr6.4:17388522-17388541 | None:intergenic | 45.0% | |
| TGCCATTCCCAAATGCATCT+AGG | + | chr6.4:17387517-17387536 | MS.gene42004:CDS | 45.0% | |
| TGGTGGTAGCCTAATTGCAA+GGG | + | chr6.4:17387464-17387483 | MS.gene42004:CDS | 45.0% | |
| ! | GCTATGCTACTAGCTTCTTC+AGG | + | chr6.4:17388316-17388335 | MS.gene42004:CDS | 45.0% |
| ! | GTGGTGCCAACAAAGTAGTT+TGG | - | chr6.4:17387377-17387396 | None:intergenic | 45.0% |
| ! | TGGACATGGTGGTGAAGATT+AGG | - | chr6.4:17387342-17387361 | None:intergenic | 45.0% |
| !! | ACAAAGTAGTTTGGTGTCCG+TGG | - | chr6.4:17387368-17387387 | None:intergenic | 45.0% |
| !! | AGATATGTGTGGTGATGGAG+GGG | - | chr6.4:17387271-17387290 | None:intergenic | 45.0% |
| !! | GAAGATATGTGTGGTGATGG+AGG | - | chr6.4:17387273-17387292 | None:intergenic | 45.0% |
| !! | TCGTGATGGAGAAGTTGATG+TGG | + | chr6.4:17388524-17388543 | MS.gene42004:CDS | 45.0% |
| !!! | AATTTGAATAATAAATTTTA+AGG | - | chr6.4:17388112-17388131 | None:intergenic | 5.0% |
| !!! | ATTTGAATAATAAATTTTAA+GGG | - | chr6.4:17388111-17388130 | None:intergenic | 5.0% |
| !!! | TAAAAAATTTTGATAAAAAA+AGG | + | chr6.4:17388049-17388068 | MS.gene42004:intron | 5.0% |
| AATGGCATGGTGTCTGATCC+AGG | - | chr6.4:17387504-17387523 | None:intergenic | 50.0% | |
| ACCACCATGTGTGGTAGGTT+GGG | - | chr6.4:17387451-17387470 | None:intergenic | 50.0% | |
| ACCATGCGCCTAGATGCATT+TGG | - | chr6.4:17387528-17387547 | None:intergenic | 50.0% | |
| CATGGTGCCTTGGAGTCAAT+TGG | + | chr6.4:17387542-17387561 | MS.gene42004:CDS | 50.0% | |
| CCATGCGCCTAGATGCATTT+GGG | - | chr6.4:17387527-17387546 | None:intergenic | 50.0% | |
| CGCCTAGATGCATTTGGGAA+TGG | - | chr6.4:17387522-17387541 | None:intergenic | 50.0% | |
| GTCGGAGAACCCTTGCAATT+AGG | - | chr6.4:17387476-17387495 | None:intergenic | 50.0% | |
| TACCACCATGTGTGGTAGGT+TGG | - | chr6.4:17387452-17387471 | None:intergenic | 50.0% | |
| ! | TGTCTGATCCAGGTAACGGT+CGG | - | chr6.4:17387494-17387513 | None:intergenic | 50.0% |
| !! | TAGTTTGGTGTCCGTGGAGT+TGG | - | chr6.4:17387362-17387381 | None:intergenic | 50.0% |
| AGGCTACCACCATGTGTGGT+AGG | - | chr6.4:17387456-17387475 | None:intergenic | 55.0% | |
| CACCACCATGTCCAACTCCA+CGG | + | chr6.4:17387348-17387367 | MS.gene42004:CDS | 55.0% | |
| CCACCATGTGTGGTAGGTTG+GGG | - | chr6.4:17387450-17387469 | None:intergenic | 55.0% | |
| CCCAAATGCATCTAGGCGCA+TGG | + | chr6.4:17387524-17387543 | MS.gene42004:CDS | 55.0% | |
| GTGTGTCCTTGAGCTGTTGG+TGG | - | chr6.4:17387396-17387415 | None:intergenic | 55.0% | |
| TGGGTGTGTCCTTGAGCTGT+TGG | - | chr6.4:17387399-17387418 | None:intergenic | 55.0% | |
| TTGGCACCACCAACAGCTCA+AGG | + | chr6.4:17387387-17387406 | MS.gene42004:CDS | 55.0% | |
| ! | TGTGGTAGGTTGGGGCCAAT+TGG | - | chr6.4:17387442-17387461 | None:intergenic | 55.0% |
| AGGGTTCTCCGACCGTTACC+TGG | + | chr6.4:17387483-17387502 | MS.gene42004:CDS | 60.0% | |
| CATCTAGGCGCATGGTGCCT+TGG | + | chr6.4:17387532-17387551 | MS.gene42004:CDS | 60.0% | |
| CCCCAACCTACCACACATGG+TGG | + | chr6.4:17387447-17387466 | MS.gene42004:CDS | 60.0% | |
| GGTGTCCGTGGAGTTGGACA+TGG | - | chr6.4:17387356-17387375 | None:intergenic | 60.0% | |
| GTCCGTGGAGTTGGACATGG+TGG | - | chr6.4:17387353-17387372 | None:intergenic | 60.0% | |
| TGGCCCCAACCTACCACACA+TGG | + | chr6.4:17387444-17387463 | MS.gene42004:CDS | 60.0% | |
| !! | GTGGTGATGGAGGGGAGTCA+AGG | - | chr6.4:17387263-17387282 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 17387231 | 17388569 | 17387231 | ID=MS.gene42004 |
| chr6.4 | mRNA | 17387231 | 17388569 | 17387231 | ID=MS.gene42004.t1;Parent=MS.gene42004 |
| chr6.4 | exon | 17387231 | 17387571 | 17387231 | ID=MS.gene42004.t1.exon1;Parent=MS.gene42004.t1 |
| chr6.4 | CDS | 17387231 | 17387571 | 17387231 | ID=cds.MS.gene42004.t1;Parent=MS.gene42004.t1 |
| chr6.4 | exon | 17388221 | 17388569 | 17388221 | ID=MS.gene42004.t1.exon2;Parent=MS.gene42004.t1 |
| chr6.4 | CDS | 17388221 | 17388569 | 17388221 | ID=cds.MS.gene42004.t1;Parent=MS.gene42004.t1 |
| Gene Sequence |
| Protein sequence |