AlfalfaGEDB | MS.gene42004

M. sativa cultivar XinJiangDaYe / MS.gene42004

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42004.t1	KEH26068.1	87	230	29	1	1	229	1	230	3.80E-108	401

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42004.t1	Q8S9H7	45.0	60	33	0	93	152	119	178	6.9e-10	65.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42004.t1	A0A072UAF3	87.0	230	29	1	1	229	1	230	2.7e-108	401.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene42004.t1	TF	MYB-related

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42004.t1	MTR_6g043490	89.130	230	24	1	1	229	1	230	1.94e-130	367
MS.gene42004.t1	MTR_6g043480	84.783	230	34	1	1	229	1	230	1.39e-124	352
MS.gene42004.t1	MTR_8g072990	66.265	249	55	7	1	228	1	241	5.95e-99	288
MS.gene42004.t1	MTR_8g073050	55.365	233	91	8	1	229	1	224	8.16e-63	196
MS.gene42004.t1	MTR_5g027570	40.260	77	43	1	103	179	89	162	1.04e-12	65.5
MS.gene42004.t1	MTR_4g111975	37.037	81	42	2	103	178	135	211	2.82e-12	65.1
MS.gene42004.t1	MTR_5g081860	38.272	81	45	2	103	183	122	197	4.11e-12	64.3
MS.gene42004.t1	MTR_3g462790	48.000	50	26	0	103	152	144	193	6.29e-12	64.3
MS.gene42004.t1	MTR_1g048660	47.170	53	28	0	107	159	13	65	6.70e-12	60.1
MS.gene42004.t1	MTR_5g069710	48.000	50	26	0	103	152	129	178	6.84e-12	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene42004.t1	AT5G58900	50.000	50	25	0	103	152	138	187	1.91e-12	65.5
MS.gene42004.t1	AT5G05790	42.424	66	37	1	88	153	114	178	1.95e-12	65.5
MS.gene42004.t1	AT5G05790	42.424	66	37	1	88	153	114	178	1.95e-12	65.5
MS.gene42004.t1	AT2G38090	37.500	80	46	1	92	171	127	202	5.02e-12	64.3
MS.gene42004.t1	AT1G49010	45.283	53	29	0	103	155	131	183	5.11e-12	64.7
MS.gene42004.t1	AT5G01200	46.575	73	33	3	97	167	136	204	6.58e-12	63.9
MS.gene42004.t1	AT3G11280	45.098	51	28	0	103	153	124	174	9.04e-12	63.5
MS.gene42004.t1	AT3G11280	45.098	51	28	0	103	153	124	174	9.04e-12	63.5
MS.gene42004.t1	AT5G08520	45.283	53	29	0	103	155	115	167	1.56e-11	63.2
MS.gene42004.t1	AT3G16350	40.625	64	38	0	89	152	120	183	3.25e-11	62.4

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Find 74 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATGCACATATGTGTC+TGG	0.497935	6.4:-17388345	None:intergenic
AAGATATGTGTGGTGATGGA+GGG	0.566805	6.4:-17387269	None:intergenic
AATGGCATGGTGTCTGATCC+AGG	0.529965	6.4:-17387501	None:intergenic
AATTAGGCTACCACCATGTG+TGG	0.664326	6.4:-17387457	None:intergenic
ACAAAGTAGTTTGGTGTCCG+TGG	0.571688	6.4:-17387365	None:intergenic
ACACATATGTGCATGGTTTA+AGG	0.242121	6.4:+17388349	MS.gene42004:CDS
ACCACCATGTGTGGTAGGTT+GGG	0.275905	6.4:-17387448	None:intergenic
ACCATGCGCCTAGATGCATT+TGG	0.430946	6.4:-17387525	None:intergenic
AGATATGTGTGGTGATGGAG+GGG	0.610906	6.4:-17387268	None:intergenic
AGATGCATTTGGGAATGGCA+TGG	0.666400	6.4:-17387514	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATGGTTTAAGGAAAAGGAAA+AGG	+	chr6.4:17388361-17388380	MS.gene42004:CDS	30.0%
GATTAGGATTGATAGAAACA+TGG	-	chr6.4:17387326-17387345	None:intergenic	30.0%
TGTCTTAGCTTATTTGTGAT+GGG	+	chr6.4:17388213-17388232	MS.gene42004:intron	30.0%
TGTTAACAATGATCTTGCAA+AGG	+	chr6.4:17388395-17388414	MS.gene42004:CDS	30.0%
ACACATATGTGCATGGTTTA+AGG	+	chr6.4:17388349-17388368	MS.gene42004:CDS	35.0%
ACCACACTCACAATTTATCA+TGG	+	chr6.4:17388157-17388176	MS.gene42004:intron	35.0%
ATGTGCATGGTTTAAGGAAA+AGG	+	chr6.4:17388355-17388374	MS.gene42004:CDS	35.0%
CCATAAAATGTTGGAACTTC+TGG	-	chr6.4:17388438-17388457	None:intergenic	35.0%
CTGTCTTAGCTTATTTGTGA+TGG	+	chr6.4:17388212-17388231	MS.gene42004:intron	35.0%
GCATTAGATGAAGATATGTG+TGG	-	chr6.4:17387282-17387301	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	17387231	17388569	17387231	ID=MS.gene42004
chr6.4	mRNA	17387231	17388569	17387231	ID=MS.gene42004.t1;Parent=MS.gene42004
chr6.4	exon	17387231	17387571	17387231	ID=MS.gene42004.t1.exon1;Parent=MS.gene42004.t1
chr6.4	CDS	17387231	17387571	17387231	ID=cds.MS.gene42004.t1;Parent=MS.gene42004.t1
chr6.4	exon	17388221	17388569	17388221	ID=MS.gene42004.t1.exon2;Parent=MS.gene42004.t1
chr6.4	CDS	17388221	17388569	17388221	ID=cds.MS.gene42004.t1;Parent=MS.gene42004.t1

Gene Sequence

>MS.gene42004

ATGCCTATTGAGATCACTGATCTTACACTCCTTGACTCCCCTCCATCACCACACATATCTTCATCTAATGCACCAATGATCCCTAATTTTGACCATGTTTCTATCAATCCTAATCTTCACCACCATGTCCAACTCCACGGACACCAAACTACTTTGTTGGCACCACCAACAGCTCAAGGACACACCCATGAGTCCTTTCGAATCACTGCCAATTGGCCCCAACCTACCACACATGGTGGTAGCCTAATTGCAAGGGTTCTCCGACCGTTACCTGGATCAGACACCATGCCATTCCCAAATGCATCTAGGCGCATGGTGCCTTGGAGTCAATTGGATCATGAGTAATTGCATCTCTCAACCTTAAATCTATTTTTTTTTGTTATGATATCACTTCGCTTCTGAAAAAAAATTAATTTTTAAAGACAGAAAAATGCAAAATTTATCACTAATTATTCAGTAAAATGTTAAAGAACCCCAATTTTTTTCTTTCTCTAATATTTATAATTATTTTAACAATTTTTTTAGCTCTTTATACTCTCATTTCTACTCCTTTTATTGGCCATTATTTCAAATTCTCTGGCAATGATTTTTTTATGCTCGTTTCTACTTCTTTTTTTAGTAGAAAAACTTGAAATAGAGATGGAAATTAAGAGATACAAATAAAAAATTGTCTATATTTTTCAATAAGTGTTAGAGAAGACTAATTTATTGATCAATTTTTATTTACGTCTCAAATACTCGTTGTTATTTCAACTTTTTAATGTAATGCTTTCTATACTCTCATTTCAACTTCAATTAAACCTTCATAGATTATCAAATAAAAAATTTTGATAAAAAAAGGTTATTAAATAATGTGCGAGCATTGATTATTGTTCTCCCCTTAAAATTTATTATTCAAATTTGTATTTAATTTTAAAAGCTTTATGACCACACTCACAATTTATCATGGATATTTAATTAATACAAATTTTGATTTTATTTCTGTCTTAGCTTATTTGTGATGGGGATGATTAAGTATGGAAAAGGTAAATGGAGTGAAATTGCTAAGAACTTTGTATGCAACAAGACTCCACAACAAGTTCAAAGCTATGCTACTAGCTTCTTCAGGTACCTACCAGACACATATGTGCATGGTTTAAGGAAAAGGAAAAGGAACAACATGATTGTTAACAATGATCTTGCAAAGGAAACTCTCACTCTTTTTCCAGAAGTTCCAACATTTTATGGAGGAGAAGCTAGCAGTAGCAAGAACACCAACAACTATGATGCAAGCACTTCCATGACTCTTCCTGTTCGTGATGGAGAAGTTGATGTGGAACTTCGTTTGGGTTTAAATTAG

Protein sequence

>MS.gene42004.t1

MPIEITDLTLLDSPPSPHISSSNAPMIPNFDHVSINPNLHHHVQLHGHQTTLLAPPTAQGHTHESFRITANWPQPTTHGGSLIARVLRPLPGSDTMPFPNASRRMVPWSQLDHDLFVMGMIKYGKGKWSEIAKNFVCNKTPQQVQSYATSFFRYLPDTYVHGLRKRKRNNMIVNNDLAKETLTLFPEVPTFYGGEASSSKNTNNYDASTSMTLPVRDGEVDVELRLGLN