Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42023.t1 | XP_024022512.1 | 68.4 | 76 | 23 | 1 | 195 | 270 | 184 | 258 | 1.70E-22 | 116.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42023.t1 | Q8S8M9 | 72.7 | 55 | 14 | 1 | 216 | 270 | 203 | 256 | 1.8e-20 | 101.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42023.t1 | W9QL36 | 68.4 | 76 | 23 | 1 | 195 | 270 | 222 | 296 | 1.2e-22 | 116.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42023.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42023.t1 | MTR_8g019520 | 77.778 | 81 | 18 | 0 | 190 | 270 | 176 | 256 | 3.83e-31 | 116 |
| MS.gene42023.t1 | MTR_8g019520 | 77.778 | 81 | 18 | 0 | 190 | 270 | 177 | 257 | 3.84e-31 | 116 |
| MS.gene42023.t1 | MTR_2g099500 | 74.138 | 58 | 15 | 0 | 212 | 269 | 193 | 250 | 3.23e-26 | 103 |
| MS.gene42023.t1 | MTR_1g015185 | 74.545 | 55 | 13 | 1 | 216 | 270 | 210 | 263 | 8.43e-24 | 97.4 |
| MS.gene42023.t1 | MTR_2g040990 | 66.667 | 60 | 17 | 2 | 213 | 270 | 195 | 253 | 1.09e-21 | 91.3 |
| MS.gene42023.t1 | MTR_4g134510 | 67.308 | 52 | 17 | 0 | 215 | 266 | 201 | 252 | 4.49e-21 | 89.7 |
| MS.gene42023.t1 | MTR_4g015830 | 67.273 | 55 | 17 | 1 | 216 | 270 | 187 | 240 | 3.14e-20 | 87.0 |
| MS.gene42023.t1 | MTR_7g068590 | 63.636 | 55 | 19 | 1 | 216 | 270 | 189 | 242 | 7.87e-19 | 83.6 |
| MS.gene42023.t1 | MTR_0024s0330 | 52.273 | 88 | 38 | 2 | 1 | 88 | 96 | 179 | 7.27e-17 | 80.5 |
| MS.gene42023.t1 | MTR_6g017265 | 51.250 | 80 | 35 | 2 | 2 | 81 | 106 | 181 | 8.44e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42023.t1 | AT5G20510 | 69.492 | 59 | 17 | 1 | 212 | 270 | 162 | 219 | 3.70e-24 | 97.4 |
| MS.gene42023.t1 | AT5G20510 | 69.492 | 59 | 17 | 1 | 212 | 270 | 203 | 260 | 6.71e-24 | 97.4 |
| MS.gene42023.t1 | AT3G42790 | 72.414 | 58 | 15 | 1 | 212 | 269 | 193 | 249 | 1.16e-23 | 96.7 |
| MS.gene42023.t1 | AT2G02470 | 72.727 | 55 | 14 | 1 | 216 | 270 | 203 | 256 | 2.72e-23 | 95.9 |
| MS.gene42023.t1 | AT2G02470 | 72.727 | 55 | 14 | 1 | 216 | 270 | 194 | 247 | 3.84e-23 | 95.1 |
| MS.gene42023.t1 | AT5G26210 | 73.214 | 56 | 14 | 1 | 214 | 269 | 200 | 254 | 1.04e-22 | 94.4 |
| MS.gene42023.t1 | AT1G14510 | 66.667 | 54 | 18 | 0 | 216 | 269 | 198 | 251 | 1.69e-21 | 90.9 |
| MS.gene42023.t1 | AT5G05610 | 61.818 | 55 | 21 | 0 | 212 | 266 | 184 | 238 | 6.95e-19 | 83.6 |
| MS.gene42023.t1 | AT5G05610 | 61.818 | 55 | 21 | 0 | 212 | 266 | 184 | 238 | 6.95e-19 | 83.6 |
| MS.gene42023.t1 | AT3G11200 | 60.784 | 51 | 20 | 0 | 212 | 262 | 189 | 239 | 1.86e-17 | 79.7 |
| MS.gene42023.t1 | AT3G11200 | 60.784 | 51 | 20 | 0 | 212 | 262 | 176 | 226 | 3.27e-17 | 79.0 |
| MS.gene42023.t1 | AT5G38690 | 27.854 | 219 | 133 | 5 | 1 | 198 | 82 | 296 | 1.28e-12 | 67.8 |
| MS.gene42023.t1 | AT5G38690 | 27.854 | 219 | 133 | 5 | 1 | 198 | 82 | 296 | 1.28e-12 | 67.8 |
Find 64 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTCATACAATAAAT+TGG | 0.148698 | 6.4:-16790589 | MS.gene42023:CDS |
| TGGGATGGCACCATTGTTAT+TGG | 0.285100 | 6.4:-16790569 | MS.gene42023:CDS |
| TCTTCCACATCCTCGTCTTT+AGG | 0.289074 | 6.4:+16790237 | None:intergenic |
| TACTAATGTTGGGCCTATAA+AGG | 0.339786 | 6.4:-16790904 | MS.gene42023:CDS |
| GTTATTGGTGATAATGATAT+TGG | 0.371338 | 6.4:-16790554 | MS.gene42023:CDS |
| GAAGTTGATCTATCTCCATA+TGG | 0.371660 | 6.4:+16790519 | None:intergenic |
| CAGAAAATCCAGAATTCATC+AGG | 0.388348 | 6.4:+16790147 | None:intergenic |
| GGCAATGGGTACCGAGGATT+GGG | 0.397506 | 6.4:-16790648 | MS.gene42023:CDS |
| TGCAAATGCCTCTACACTTC+GGG | 0.407999 | 6.4:+16791167 | None:intergenic |
| TAATTGATAATAATGCTATA+AGG | 0.408256 | 6.4:-16790493 | MS.gene42023:CDS |
| TCCTCAATTAGTTCTCTCTC+TGG | 0.418949 | 6.4:+16790470 | None:intergenic |
| TGGCAATGGGTACCGAGGAT+TGG | 0.420412 | 6.4:-16790649 | MS.gene42023:CDS |
| ATGGGTAATAATACTAATGT+TGG | 0.425773 | 6.4:-16790915 | MS.gene42023:CDS |
| GTTCGTATAGCCAAGGCATC+TGG | 0.430043 | 6.4:-16790996 | MS.gene42023:CDS |
| TTCAACTCATACAATAAATT+GGG | 0.436614 | 6.4:-16790588 | MS.gene42023:CDS |
| CTAAAGCATCAGCCGCCTAC+AGG | 0.441391 | 6.4:-16791026 | MS.gene42023:CDS |
| TCGATATGCTTAACCCTAGC+AGG | 0.453649 | 6.4:+16790078 | None:intergenic |
| GGTGCATGCGGTGAGCAATA+TGG | 0.455947 | 6.4:-16790171 | MS.gene42023:CDS |
| CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6.4:+16790042 | None:intergenic |
| AATATGGCCCTGATGAATTC+TGG | 0.457151 | 6.4:-16790155 | MS.gene42023:CDS |
| CTCAGAAATGCTTAGCAAGA+TGG | 0.474202 | 6.4:-16790961 | MS.gene42023:CDS |
| TGGGTAATAATACTAATGTT+GGG | 0.488773 | 6.4:-16790914 | MS.gene42023:CDS |
| GAAGAAATTTCTCATCCCTC+TGG | 0.489177 | 6.4:-16790449 | MS.gene42023:CDS |
| ACCAAACATTGAAAATGTAC+TGG | 0.490987 | 6.4:-16790426 | MS.gene42023:CDS |
| ATGGGTACCGAGGATTGGGC+TGG | 0.494204 | 6.4:-16790644 | MS.gene42023:CDS |
| AAGTTGATCTATCTCCATAT+GGG | 0.500138 | 6.4:+16790520 | None:intergenic |
| TGGTAGACTGAATTCCCATA+TGG | 0.509370 | 6.4:-16790534 | MS.gene42023:CDS |
| GTGTGAATATCACCCCTGCT+AGG | 0.514666 | 6.4:-16790092 | MS.gene42023:CDS |
| TAAAGCATCAGCCGCCTACA+GGG | 0.517220 | 6.4:-16791025 | MS.gene42023:CDS |
| CCCATTGCCACACAATGAGT+TGG | 0.522267 | 6.4:+16790662 | None:intergenic |
| TTGCAAATGCCTCTACACTT+CGG | 0.528376 | 6.4:+16791166 | None:intergenic |
| CCATTGCCACACAATGAGTT+GGG | 0.530914 | 6.4:+16790663 | None:intergenic |
| CCCAACTCATTGTGTGGCAA+TGG | 0.536825 | 6.4:-16790663 | MS.gene42023:CDS |
| GTTACCTAAAGACGAGGATG+TGG | 0.537974 | 6.4:-16790241 | MS.gene42023:CDS |
| TCTGTGACATTTGTGAGAGG+TGG | 0.541786 | 6.4:-16790128 | MS.gene42023:CDS |
| TTTGTGAGAGGTGGTTCCAT+GGG | 0.542875 | 6.4:-16790119 | MS.gene42023:CDS |
| GCCAGAGAGAGAACTAATTG+AGG | 0.544336 | 6.4:-16790471 | MS.gene42023:CDS |
| ACACGTAAAACCAGATGCCT+TGG | 0.548428 | 6.4:+16790986 | None:intergenic |
| ATGAGTTGAAGACAAAGGAC+TGG | 0.563229 | 6.4:+16790601 | None:intergenic |
| CCAACTCATTGTGTGGCAAT+GGG | 0.564276 | 6.4:-16790662 | MS.gene42023:CDS |
| AACATTTCCAGCCCAATCCT+CGG | 0.568680 | 6.4:+16790637 | None:intergenic |
| TGTGAATATCACCCCTGCTA+GGG | 0.571594 | 6.4:-16790091 | MS.gene42023:CDS |
| CGATATGCTTAACCCTAGCA+GGG | 0.573096 | 6.4:+16790079 | None:intergenic |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6.4:+16790103 | None:intergenic |
| ATTTGTGAGAGGTGGTTCCA+TGG | 0.579292 | 6.4:-16790120 | MS.gene42023:CDS |
| GAGGAAGATGAAGATGAAGA+CGG | 0.585144 | 6.4:-16790207 | MS.gene42023:CDS |
| ATTGTATGAGTTGAAGACAA+AGG | 0.596124 | 6.4:+16790596 | None:intergenic |
| AACAAGAGAGCTCGCCCTTG+AGG | 0.603261 | 6.4:-16790027 | None:intergenic |
| TGAGTTGAAGACAAAGGACT+GGG | 0.605459 | 6.4:+16790602 | None:intergenic |
| ATCATTATCACCAATAACAA+TGG | 0.607015 | 6.4:+16790559 | None:intergenic |
| GGCACTTGTTCGTATAGCCA+AGG | 0.607034 | 6.4:-16791003 | MS.gene42023:CDS |
| ACTCATACAATAAATTGGGA+TGG | 0.616351 | 6.4:-16790584 | MS.gene42023:CDS |
| TGGATGTGCCCGAAGTGTAG+AGG | 0.628364 | 6.4:-16791175 | MS.gene42023:CDS |
| GGATGTGGAAGAACATTGTG+AGG | 0.641770 | 6.4:-16790226 | MS.gene42023:CDS |
| AAAGCATCAGCCGCCTACAG+GGG | 0.652248 | 6.4:-16791024 | MS.gene42023:CDS |
| CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6.4:+16791014 | None:intergenic |
| TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6.4:-16790654 | MS.gene42023:CDS |
| ATATTGCCCAACTCATTGTG+TGG | 0.681307 | 6.4:-16790669 | MS.gene42023:CDS |
| ATACGAACAAGTGCCCCTGT+AGG | 0.687555 | 6.4:+16791011 | None:intergenic |
| AGAAAATCCAGAATTCATCA+GGG | 0.689840 | 6.4:+16790148 | None:intergenic |
| GAAGACGGAGAGAACTCATG+TGG | 0.691398 | 6.4:-16790192 | MS.gene42023:CDS |
| GAGAACTCATGTGGTGCATG+CGG | 0.697071 | 6.4:-16790183 | MS.gene42023:CDS |
| TTTGGAGTTACCTAAAGACG+AGG | 0.697923 | 6.4:-16790247 | MS.gene42023:CDS |
| GATATGCTTAACCCTAGCAG+GGG | 0.736993 | 6.4:+16790080 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAACATGTTTTATGATTT+TGG | - | chr6.4:16790086-16790105 | MS.gene42023:CDS | 15.0% |
| !!! | TAATTGATAATAATGCTATA+AGG | - | chr6.4:16790708-16790727 | MS.gene42023:intron | 15.0% |
| !!! | TTTTGAATTTTCTCTTAAAT+AGG | - | chr6.4:16790930-16790949 | MS.gene42023:CDS | 15.0% |
| !! | ATAAAGGAAAAATATGCTTT+GGG | - | chr6.4:16790313-16790332 | MS.gene42023:intron | 20.0% |
| !! | TATAAAGGAAAAATATGCTT+TGG | - | chr6.4:16790312-16790331 | MS.gene42023:intron | 20.0% |
| !! | TTCAACTCATACAATAAATT+GGG | - | chr6.4:16790613-16790632 | MS.gene42023:CDS | 20.0% |
| !!! | AAAGCATATTTTTCCTTTAT+AGG | + | chr6.4:16790313-16790332 | None:intergenic | 20.0% |
| !!! | TAGATTTTAACACATTGATT+GGG | - | chr6.4:16790843-16790862 | MS.gene42023:intron | 20.0% |
| ! | ATCATTATCACCAATAACAA+TGG | + | chr6.4:16790645-16790664 | None:intergenic | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6.4:16790286-16790305 | MS.gene42023:intron | 25.0% |
| ! | CATATATCCAACAAGTATTA+AGG | + | chr6.4:16790892-16790911 | None:intergenic | 25.0% |
| ! | CTTCAACTCATACAATAAAT+TGG | - | chr6.4:16790612-16790631 | MS.gene42023:CDS | 25.0% |
| ! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6.4:16790268-16790287 | MS.gene42023:intron | 25.0% |
| ! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6.4:16790267-16790286 | MS.gene42023:intron | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6.4:16790287-16790306 | MS.gene42023:intron | 25.0% |
| !! | ATTTTCTCTTAAATAGGCTT+TGG | - | chr6.4:16790936-16790955 | MS.gene42023:CDS | 25.0% |
| !! | CTTAATACTTGTTGGATATA+TGG | - | chr6.4:16790890-16790909 | MS.gene42023:CDS | 25.0% |
| !! | GTTATTGGTGATAATGATAT+TGG | - | chr6.4:16790647-16790666 | MS.gene42023:CDS | 25.0% |
| !! | TCTTTATTTGATGCTGAATA+AGG | - | chr6.4:16790384-16790403 | MS.gene42023:CDS | 25.0% |
| !!! | ATGTTTTATGATTTTGGTGT+TGG | - | chr6.4:16790092-16790111 | MS.gene42023:CDS | 25.0% |
| !!! | GTAGATTTTAACACATTGAT+TGG | - | chr6.4:16790842-16790861 | MS.gene42023:intron | 25.0% |
| ACCAAACATTGAAAATGTAC+TGG | - | chr6.4:16790775-16790794 | MS.gene42023:intron | 30.0% | |
| ACTCATACAATAAATTGGGA+TGG | - | chr6.4:16790617-16790636 | MS.gene42023:CDS | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | + | chr6.4:16791056-16791075 | None:intergenic | 30.0% | |
| ATGACATCCTTAATACTTGT+TGG | - | chr6.4:16790882-16790901 | MS.gene42023:intron | 30.0% | |
| GTGACAGCTACATAAAAATA+GGG | + | chr6.4:16790355-16790374 | None:intergenic | 30.0% | |
| TGTGACAGCTACATAAAAAT+AGG | + | chr6.4:16790356-16790375 | None:intergenic | 30.0% | |
| TTAACGAAGATTAACGATGT+AGG | - | chr6.4:16790149-16790168 | MS.gene42023:CDS | 30.0% | |
| ! | AAGTTGATCTATCTCCATAT+GGG | + | chr6.4:16790684-16790703 | None:intergenic | 30.0% |
| ! | ATTGTATGAGTTGAAGACAA+AGG | + | chr6.4:16790608-16790627 | None:intergenic | 30.0% |
| ! | TCCAGTACATTTTCAATGTT+TGG | + | chr6.4:16790779-16790798 | None:intergenic | 30.0% |
| !! | CATATTTGTTATTATGCTGC+AGG | - | chr6.4:16790490-16790509 | MS.gene42023:CDS | 30.0% |
| !! | TTTTAACACATTGATTGGGA+AGG | - | chr6.4:16790847-16790866 | MS.gene42023:intron | 30.0% |
| CAAGATGGAAGCTGAAAAAT+TGG | - | chr6.4:16790255-16790274 | MS.gene42023:intron | 35.0% | |
| CAGAAAATCCAGAATTCATC+AGG | + | chr6.4:16791057-16791076 | None:intergenic | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6.4:16790297-16790316 | MS.gene42023:intron | 35.0% | |
| TGATATTCACACATTTCCCA+TGG | + | chr6.4:16791101-16791120 | None:intergenic | 35.0% | |
| ! | ATTTTCAATGTTTGGTCCAG+AGG | + | chr6.4:16790771-16790790 | None:intergenic | 35.0% |
| ! | GAAGTTGATCTATCTCCATA+TGG | + | chr6.4:16790685-16790704 | None:intergenic | 35.0% |
| ! | TTTTCAATGTTTGGTCCAGA+GGG | + | chr6.4:16790770-16790789 | None:intergenic | 35.0% |
| ! | TTTTCTGTGACATTTGTGAG+AGG | - | chr6.4:16791070-16791089 | MS.gene42023:intron | 35.0% |
| !! | ATTTGTTATTATGCTGCAGG+AGG | - | chr6.4:16790493-16790512 | MS.gene42023:CDS | 35.0% |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6.4:16791162-16791181 | None:intergenic | 35.0% |
| !! | GGAAAAATATGCTTTGGGAA+AGG | - | chr6.4:16790318-16790337 | MS.gene42023:intron | 35.0% |
| AATATGGCCCTGATGAATTC+TGG | - | chr6.4:16791046-16791065 | MS.gene42023:intron | 40.0% | |
| ATATTGCCCAACTCATTGTG+TGG | - | chr6.4:16790532-16790551 | MS.gene42023:CDS | 40.0% | |
| CTCAGAAATGCTTAGCAAGA+TGG | - | chr6.4:16790240-16790259 | MS.gene42023:CDS | 40.0% | |
| GAAGAAATTTCTCATCCCTC+TGG | - | chr6.4:16790752-16790771 | MS.gene42023:intron | 40.0% | |
| GAGGAAGATGAAGATGAAGA+CGG | - | chr6.4:16790994-16791013 | MS.gene42023:CDS | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6.4:16790061-16790080 | MS.gene42023:CDS | 40.0% | |
| TGGTAGACTGAATTCCCATA+TGG | - | chr6.4:16790667-16790686 | MS.gene42023:CDS | 40.0% | |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6.4:16790038-16790057 | None:intergenic | 40.0% | |
| ! | ATGAGTTGAAGACAAAGGAC+TGG | + | chr6.4:16790603-16790622 | None:intergenic | 40.0% |
| ! | TCCTCAATTAGTTCTCTCTC+TGG | + | chr6.4:16790734-16790753 | None:intergenic | 40.0% |
| ! | TGAGTTGAAGACAAAGGACT+GGG | + | chr6.4:16790602-16790621 | None:intergenic | 40.0% |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6.4:16790954-16790973 | MS.gene42023:CDS | 40.0% |
| AACATTTCCAGCCCAATCCT+CGG | + | chr6.4:16790567-16790586 | None:intergenic | 45.0% | |
| ACACGTAAAACCAGATGCCT+TGG | + | chr6.4:16790218-16790237 | None:intergenic | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | - | chr6.4:16791081-16791100 | MS.gene42023:intron | 45.0% | |
| CCAACTCATTGTGTGGCAAT+GGG | - | chr6.4:16790539-16790558 | MS.gene42023:CDS | 45.0% | |
| CCATTGCCACACAATGAGTT+GGG | + | chr6.4:16790541-16790560 | None:intergenic | 45.0% | |
| CGATATGCTTAACCCTAGCA+GGG | + | chr6.4:16791125-16791144 | None:intergenic | 45.0% | |
| GATATGCTTAACCCTAGCAG+GGG | + | chr6.4:16791124-16791143 | None:intergenic | 45.0% | |
| GCCAGAGAGAGAACTAATTG+AGG | - | chr6.4:16790730-16790749 | MS.gene42023:intron | 45.0% | |
| GGATGTGGAAGAACATTGTG+AGG | - | chr6.4:16790975-16790994 | MS.gene42023:CDS | 45.0% | |
| GTTACCTAAAGACGAGGATG+TGG | - | chr6.4:16790960-16790979 | MS.gene42023:CDS | 45.0% | |
| TCGATATGCTTAACCCTAGC+AGG | + | chr6.4:16791126-16791145 | None:intergenic | 45.0% | |
| TCTGTGACATTTGTGAGAGG+TGG | - | chr6.4:16791073-16791092 | MS.gene42023:intron | 45.0% | |
| TCTTCCACATCCTCGTCTTT+AGG | + | chr6.4:16790967-16790986 | None:intergenic | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6.4:16790037-16790056 | None:intergenic | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6.4:16790632-16790651 | MS.gene42023:CDS | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6.4:16791110-16791129 | MS.gene42023:intron | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | - | chr6.4:16791082-16791101 | MS.gene42023:intron | 45.0% | |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6.4:16790193-16790212 | None:intergenic | 50.0% | |
| CCCAACTCATTGTGTGGCAA+TGG | - | chr6.4:16790538-16790557 | MS.gene42023:CDS | 50.0% | |
| CCCATTGCCACACAATGAGT+TGG | + | chr6.4:16790542-16790561 | None:intergenic | 50.0% | |
| GAAGACGGAGAGAACTCATG+TGG | - | chr6.4:16791009-16791028 | MS.gene42023:CDS | 50.0% | |
| GAGAACTCATGTGGTGCATG+CGG | - | chr6.4:16791018-16791037 | MS.gene42023:CDS | 50.0% | |
| GGCACTTGTTCGTATAGCCA+AGG | - | chr6.4:16790198-16790217 | MS.gene42023:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6.4:16791109-16791128 | MS.gene42023:intron | 50.0% | |
| ! | GTTCGTATAGCCAAGGCATC+TGG | - | chr6.4:16790205-16790224 | MS.gene42023:CDS | 50.0% |
| ! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6.4:16790176-16790195 | MS.gene42023:CDS | 50.0% |
| GGTGCATGCGGTGAGCAATA+TGG | - | chr6.4:16791030-16791049 | MS.gene42023:CDS | 55.0% | |
| ! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6.4:16790177-16790196 | MS.gene42023:CDS | 55.0% |
| ! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6.4:16790175-16790194 | MS.gene42023:CDS | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6.4:16790547-16790566 | MS.gene42023:CDS | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6.4:16790553-16790572 | MS.gene42023:CDS | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6.4:16790552-16790571 | MS.gene42023:CDS | 55.0% |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6.4:16790190-16790209 | None:intergenic | 60.0% | |
| !! | ATGGGTACCGAGGATTGGGC+TGG | - | chr6.4:16790557-16790576 | MS.gene42023:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 16790029 | 16791194 | 16790029 | ID=MS.gene42023 |
| chr6.4 | mRNA | 16790029 | 16791194 | 16790029 | ID=MS.gene42023.t1;Parent=MS.gene42023 |
| chr6.4 | exon | 16791151 | 16791194 | 16791151 | ID=MS.gene42023.t1.exon1;Parent=MS.gene42023.t1 |
| chr6.4 | CDS | 16791151 | 16791194 | 16791151 | ID=cds.MS.gene42023.t1;Parent=MS.gene42023.t1 |
| chr6.4 | exon | 16790884 | 16791052 | 16790884 | ID=MS.gene42023.t1.exon2;Parent=MS.gene42023.t1 |
| chr6.4 | CDS | 16790884 | 16791052 | 16790884 | ID=cds.MS.gene42023.t1;Parent=MS.gene42023.t1 |
| chr6.4 | exon | 16790355 | 16790711 | 16790355 | ID=MS.gene42023.t1.exon3;Parent=MS.gene42023.t1 |
| chr6.4 | CDS | 16790355 | 16790711 | 16790355 | ID=cds.MS.gene42023.t1;Parent=MS.gene42023.t1 |
| chr6.4 | exon | 16790029 | 16790271 | 16790029 | ID=MS.gene42023.t1.exon4;Parent=MS.gene42023.t1 |
| chr6.4 | CDS | 16790029 | 16790271 | 16790029 | ID=cds.MS.gene42023.t1;Parent=MS.gene42023.t1 |
| Gene Sequence |
| Protein sequence |
