Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42026.t1 | GAU27354.1 | 37.7 | 321 | 132 | 8 | 9 | 275 | 26 | 332 | 1.80E-40 | 176.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42026.t1 | B8B8I3 | 65.1 | 63 | 22 | 0 | 284 | 346 | 181 | 243 | 1.2e-21 | 105.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42026.t1 | A0A2Z6M4I1 | 37.7 | 321 | 132 | 8 | 9 | 275 | 26 | 332 | 1.3e-40 | 176.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42026.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42026.t1 | MTR_0024s0330 | 55.714 | 140 | 58 | 2 | 26 | 165 | 44 | 179 | 4.82e-40 | 150 |
| MS.gene42026.t1 | MTR_6g017265 | 52.258 | 155 | 67 | 3 | 7 | 158 | 31 | 181 | 1.29e-38 | 145 |
| MS.gene42026.t1 | MTR_8g019520 | 80.247 | 81 | 16 | 0 | 267 | 347 | 176 | 256 | 5.73e-32 | 120 |
| MS.gene42026.t1 | MTR_8g019520 | 80.247 | 81 | 16 | 0 | 267 | 347 | 177 | 257 | 5.81e-32 | 120 |
| MS.gene42026.t1 | MTR_2g099500 | 75.862 | 58 | 14 | 0 | 289 | 346 | 193 | 250 | 5.60e-26 | 104 |
| MS.gene42026.t1 | MTR_1g015185 | 76.364 | 55 | 12 | 1 | 293 | 347 | 210 | 263 | 1.38e-23 | 98.6 |
| MS.gene42026.t1 | MTR_2g040990 | 68.333 | 60 | 16 | 2 | 290 | 347 | 195 | 253 | 1.79e-21 | 92.4 |
| MS.gene42026.t1 | MTR_4g134510 | 69.231 | 52 | 16 | 0 | 292 | 343 | 201 | 252 | 6.22e-21 | 90.9 |
| MS.gene42026.t1 | MTR_4g015830 | 69.091 | 55 | 16 | 1 | 293 | 347 | 187 | 240 | 4.15e-20 | 88.2 |
| MS.gene42026.t1 | MTR_7g068590 | 65.455 | 55 | 18 | 1 | 293 | 347 | 189 | 242 | 9.94e-19 | 84.7 |
| MS.gene42026.t1 | MTR_5g018400 | 34.483 | 116 | 67 | 2 | 23 | 135 | 160 | 269 | 1.45e-13 | 71.6 |
| MS.gene42026.t1 | MTR_5g018470 | 39.175 | 97 | 56 | 1 | 23 | 119 | 162 | 255 | 1.02e-12 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42026.t1 | AT5G38690 | 31.365 | 271 | 161 | 5 | 26 | 275 | 30 | 296 | 1.48e-29 | 119 |
| MS.gene42026.t1 | AT5G38690 | 31.365 | 271 | 161 | 5 | 26 | 275 | 30 | 296 | 1.48e-29 | 119 |
| MS.gene42026.t1 | AT1G67780 | 42.857 | 147 | 68 | 3 | 7 | 137 | 11 | 157 | 2.74e-28 | 115 |
| MS.gene42026.t1 | AT1G67780 | 42.857 | 147 | 68 | 3 | 7 | 137 | 11 | 157 | 2.74e-28 | 115 |
| MS.gene42026.t1 | AT1G67270 | 48.246 | 114 | 56 | 1 | 9 | 119 | 5 | 118 | 1.32e-25 | 107 |
| MS.gene42026.t1 | AT5G20510 | 71.667 | 60 | 16 | 1 | 288 | 347 | 161 | 219 | 4.20e-25 | 101 |
| MS.gene42026.t1 | AT5G20510 | 71.667 | 60 | 16 | 1 | 288 | 347 | 202 | 260 | 7.48e-25 | 102 |
| MS.gene42026.t1 | AT3G42790 | 74.576 | 59 | 14 | 1 | 288 | 346 | 192 | 249 | 1.27e-24 | 100 |
| MS.gene42026.t1 | AT2G02470 | 74.545 | 55 | 13 | 1 | 293 | 347 | 203 | 256 | 4.66e-23 | 97.1 |
| MS.gene42026.t1 | AT2G02470 | 74.545 | 55 | 13 | 1 | 293 | 347 | 194 | 247 | 5.91e-23 | 96.3 |
| MS.gene42026.t1 | AT5G26210 | 75.000 | 56 | 13 | 1 | 291 | 346 | 200 | 254 | 1.98e-22 | 95.1 |
| MS.gene42026.t1 | AT1G14510 | 68.519 | 54 | 17 | 0 | 293 | 346 | 198 | 251 | 2.20e-21 | 92.0 |
| MS.gene42026.t1 | AT5G05610 | 64.286 | 56 | 20 | 0 | 288 | 343 | 183 | 238 | 6.74e-20 | 87.8 |
| MS.gene42026.t1 | AT5G05610 | 64.286 | 56 | 20 | 0 | 288 | 343 | 183 | 238 | 6.74e-20 | 87.8 |
| MS.gene42026.t1 | AT3G11200 | 63.462 | 52 | 19 | 0 | 288 | 339 | 188 | 239 | 1.55e-18 | 84.3 |
| MS.gene42026.t1 | AT3G11200 | 63.462 | 52 | 19 | 0 | 288 | 339 | 175 | 226 | 2.14e-18 | 83.6 |
| MS.gene42026.t1 | AT2G23530 | 39.252 | 107 | 54 | 3 | 18 | 119 | 153 | 253 | 2.42e-13 | 71.2 |
| MS.gene42026.t1 | AT4G37110 | 33.846 | 130 | 82 | 3 | 23 | 152 | 83 | 208 | 6.36e-13 | 69.3 |
| MS.gene42026.t1 | AT4G37110 | 33.846 | 130 | 82 | 3 | 23 | 152 | 83 | 208 | 6.36e-13 | 69.3 |
| MS.gene42026.t1 | AT4G37110 | 33.846 | 130 | 82 | 3 | 23 | 152 | 165 | 290 | 1.82e-12 | 68.2 |
| MS.gene42026.t1 | AT4G37110 | 33.846 | 130 | 82 | 3 | 23 | 152 | 178 | 303 | 2.11e-12 | 68.2 |
Find 78 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAACTCATACAATAAAT+TGG | 0.148698 | 6.4:-16775995 | MS.gene42026:CDS |
| AAAGCATATTCTTCCTTTAT+AGG | 0.158707 | 6.4:+16776297 | None:intergenic |
| TCTTCCACATCCTCGTCTTT+AGG | 0.278732 | 6.4:+16775643 | None:intergenic |
| TGGGATGGCACCATTGTTAT+TGG | 0.285100 | 6.4:-16775975 | MS.gene42026:CDS |
| TACTAATGTTGGGCCTATAA+AGG | 0.359306 | 6.4:-16776310 | MS.gene42026:CDS |
| GAAATTGTTCTATCTCCATA+TGG | 0.365417 | 6.4:+16775925 | None:intergenic |
| GTTATTGGTGATAATGATAT+TGG | 0.371338 | 6.4:-16775960 | MS.gene42026:CDS |
| CAGAAAATCCAGAATTCATC+AGG | 0.388348 | 6.4:+16775553 | None:intergenic |
| GGCAATGGGTACCGAGGATT+GGG | 0.397506 | 6.4:-16776054 | MS.gene42026:CDS |
| GGCACATCCAATTATTCAAA+AGG | 0.404163 | 6.4:+16776594 | None:intergenic |
| TGCAAATGCCTCTACACTTC+GGG | 0.407999 | 6.4:+16776573 | None:intergenic |
| TATAAAGGAAGAATATGCTT+TGG | 0.417141 | 6.4:-16776295 | MS.gene42026:CDS |
| TGGCAATGGGTACCGAGGAT+TGG | 0.420412 | 6.4:-16776055 | MS.gene42026:CDS |
| ATAAAGGAAGAATATGCTTT+GGG | 0.425102 | 6.4:-16776294 | MS.gene42026:CDS |
| ATGGGTAATAATACTAATGT+TGG | 0.425773 | 6.4:-16776321 | MS.gene42026:CDS |
| GTTCGTATAGCCAAGGCATC+TGG | 0.430043 | 6.4:-16776402 | MS.gene42026:CDS |
| ACCAAACATTGAAAATGTAT+TGG | 0.434305 | 6.4:-16775832 | MS.gene42026:CDS |
| TTCAACTCATACAATAAATT+GGG | 0.436614 | 6.4:-16775994 | MS.gene42026:CDS |
| TCGATATGCTTAGCCCTAGC+AGG | 0.441225 | 6.4:+16775484 | None:intergenic |
| CTAAAGCATCAGCCGCCTAC+AGG | 0.441391 | 6.4:-16776432 | MS.gene42026:CDS |
| AAATTGTTCTATCTCCATAT+GGG | 0.452167 | 6.4:+16775926 | None:intergenic |
| CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6.4:+16775448 | None:intergenic |
| AATATGGCCCTGATGAATTC+TGG | 0.457151 | 6.4:-16775561 | MS.gene42026:CDS |
| CTCAGAAATGCTTAGCAAGA+TGG | 0.474202 | 6.4:-16776367 | MS.gene42026:CDS |
| GTGAGTCAAACCTGTCTAAG+AGG | 0.480314 | 6.4:+16776743 | None:intergenic |
| GAAGTGCCGACAAGAAATAA+AGG | 0.482752 | 6.4:-16776833 | MS.gene42026:intron |
| TGGGTAATAATACTAATGTT+GGG | 0.488773 | 6.4:-16776320 | MS.gene42026:CDS |
| GGTGCTTGCGGTGAGCAATA+TGG | 0.489726 | 6.4:-16775577 | MS.gene42026:CDS |
| GAAGAAATTTCTCATCCCTA+TGG | 0.490207 | 6.4:-16775855 | MS.gene42026:CDS |
| ATGGGTACCGAGGATTGGGC+TGG | 0.494204 | 6.4:-16776050 | MS.gene42026:CDS |
| GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6.4:-16775498 | MS.gene42026:CDS |
| TGGTAGACTGAATTCCCATA+TGG | 0.509370 | 6.4:-16775940 | MS.gene42026:CDS |
| AAAGGAAGTCTTGTTTCTTG+AGG | 0.511116 | 6.4:-16776780 | MS.gene42026:CDS |
| TACTTGAAAATAATGCGATA+AGG | 0.515590 | 6.4:-16775899 | MS.gene42026:CDS |
| TAAAGCATCAGCCGCCTACA+GGG | 0.517220 | 6.4:-16776431 | MS.gene42026:CDS |
| ATTGAATATCAACGAGAAGA+TGG | 0.523116 | 6.4:-16775807 | MS.gene42026:CDS |
| CCCGACTCATTGTGTGGCAA+TGG | 0.526130 | 6.4:-16776069 | MS.gene42026:CDS |
| CTTTCCAACTCGAATTCCAC+GGG | 0.526130 | 6.4:+16777005 | None:intergenic |
| GACAAAATTTGCTAGGAACA+CGG | 0.526762 | 6.4:+16776977 | None:intergenic |
| TTGCAAATGCCTCTACACTT+CGG | 0.528376 | 6.4:+16776572 | None:intergenic |
| AAATCCCGTGGAATTCGAGT+TGG | 0.532955 | 6.4:-16777009 | MS.gene42026:CDS |
| GTTACCTAAAGACGAGGATG+TGG | 0.537974 | 6.4:-16775647 | MS.gene42026:CDS |
| TGAATTTAGATATGGGGAAG+AGG | 0.541078 | 6.4:-16776630 | MS.gene42026:intron |
| TCTGTGACATTTGTGAGAGG+TGG | 0.541786 | 6.4:-16775534 | MS.gene42026:CDS |
| TTTGTGAGAGGTGGTTCCAT+GGG | 0.542875 | 6.4:-16775525 | MS.gene42026:CDS |
| ACAAAATTTGCTAGGAACAC+GGG | 0.544351 | 6.4:+16776978 | None:intergenic |
| CCGACTCATTGTGTGGCAAT+GGG | 0.547349 | 6.4:-16776068 | MS.gene42026:CDS |
| ACACGTAAAACCAGATGCCT+TGG | 0.548428 | 6.4:+16776392 | None:intergenic |
| CCATTGCCACACAATGAGTC+GGG | 0.548885 | 6.4:+16776069 | None:intergenic |
| GAGAACTCATGCGGTGCTTG+CGG | 0.564119 | 6.4:-16775589 | MS.gene42026:CDS |
| TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6.4:-16775497 | MS.gene42026:CDS |
| AACATTTCCAGCCCAATCCT+CGG | 0.568680 | 6.4:+16776043 | None:intergenic |
| CCCATTGCCACACAATGAGT+CGG | 0.571139 | 6.4:+16776068 | None:intergenic |
| CGATATGCTTAGCCCTAGCA+GGG | 0.574696 | 6.4:+16775485 | None:intergenic |
| TCTTTCCAACTCGAATTCCA+CGG | 0.576672 | 6.4:+16777004 | None:intergenic |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6.4:+16775509 | None:intergenic |
| TGAGTTGAAGACAAAGGACT+AGG | 0.578822 | 6.4:+16776008 | None:intergenic |
| ATTTGTGAGAGGTGGTTCCA+TGG | 0.579292 | 6.4:-16775526 | MS.gene42026:CDS |
| ACCTGGTGACAAAATTTGCT+AGG | 0.596109 | 6.4:+16776970 | None:intergenic |
| ATTGTATGAGTTGAAGACAA+AGG | 0.596124 | 6.4:+16776002 | None:intergenic |
| AACAAGAGAGCTCGCCCTTG+AGG | 0.603261 | 6.4:-16775433 | None:intergenic |
| ATCATTATCACCAATAACAA+TGG | 0.607015 | 6.4:+16775965 | None:intergenic |
| GGCACTTGTTCGTATAGCCA+AGG | 0.607034 | 6.4:-16776409 | MS.gene42026:CDS |
| GTGTGTTGAATTTAGATATG+GGG | 0.609714 | 6.4:-16776636 | MS.gene42026:intron |
| GGAAGAATATGCTTTGGGAA+AGG | 0.614050 | 6.4:-16776289 | MS.gene42026:intron |
| ACTCATACAATAAATTGGGA+TGG | 0.616351 | 6.4:-16775990 | MS.gene42026:CDS |
| TGGATGTGCCCGAAGTGTAG+AGG | 0.628364 | 6.4:-16776581 | MS.gene42026:CDS |
| AAAGCATCAGCCGCCTACAG+GGG | 0.652248 | 6.4:-16776430 | MS.gene42026:CDS |
| CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6.4:+16776420 | None:intergenic |
| TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6.4:-16776060 | MS.gene42026:CDS |
| GGATGTGGAAGAACTTTGTG+AGG | 0.667848 | 6.4:-16775632 | MS.gene42026:CDS |
| ATATTGCCCGACTCATTGTG+TGG | 0.684429 | 6.4:-16776075 | MS.gene42026:CDS |
| ATACGAACAAGTGCCCCTGT+AGG | 0.687555 | 6.4:+16776417 | None:intergenic |
| AGAAAATCCAGAATTCATCA+GGG | 0.689840 | 6.4:+16775554 | None:intergenic |
| TTTGGAGTTACCTAAAGACG+AGG | 0.697923 | 6.4:-16775653 | MS.gene42026:CDS |
| GAGGCAGATGAAGATGAACA+CGG | 0.721515 | 6.4:-16775613 | MS.gene42026:CDS |
| GAACACGGAGAGAACTCATG+CGG | 0.730835 | 6.4:-16775598 | MS.gene42026:CDS |
| GATATGCTTAGCCCTAGCAG+GGG | 0.762022 | 6.4:+16775486 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTGTTTATTTTTTCACA+TGG | - | chr6.4:16775619-16775638 | MS.gene42026:CDS | 15.0% |
| !!! | TAAAACATGTTTTATGATTT+TGG | - | chr6.4:16775953-16775972 | MS.gene42026:CDS | 15.0% |
| !! | TTCAACTCATACAATAAATT+GGG | - | chr6.4:16776480-16776499 | MS.gene42026:intron | 20.0% |
| !!! | AAGTAAACCTTTTGAATAAT+TGG | - | chr6.4:16775873-16775892 | MS.gene42026:CDS | 20.0% |
| !!! | TAGATTTTAACACATTGATT+GGG | - | chr6.4:16776710-16776729 | MS.gene42026:intron | 20.0% |
| !!! | TTTTGAATTTTCTCTTAAGT+AGG | - | chr6.4:16776797-16776816 | MS.gene42026:CDS | 20.0% |
| ! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6.4:16776180-16776199 | None:intergenic | 25.0% |
| ! | AAATTGTTCTATCTCCATAT+GGG | + | chr6.4:16776551-16776570 | None:intergenic | 25.0% |
| ! | ACCAAACATTGAAAATGTAT+TGG | - | chr6.4:16776642-16776661 | MS.gene42026:intron | 25.0% |
| ! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6.4:16776180-16776199 | MS.gene42026:intron | 25.0% |
| ! | ATCATTATCACCAATAACAA+TGG | + | chr6.4:16776512-16776531 | None:intergenic | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6.4:16776153-16776172 | MS.gene42026:intron | 25.0% |
| ! | CATATATCCAACAAGTATTA+AGG | + | chr6.4:16776759-16776778 | None:intergenic | 25.0% |
| ! | CTTCAACTCATACAATAAAT+TGG | - | chr6.4:16776479-16776498 | MS.gene42026:intron | 25.0% |
| ! | GAAAAATTGGAACTTTCTAT+GGG | - | chr6.4:16776135-16776154 | MS.gene42026:intron | 25.0% |
| ! | TACTTGAAAATAATGCGATA+AGG | - | chr6.4:16776575-16776594 | MS.gene42026:CDS | 25.0% |
| ! | TATAAAGGAAGAATATGCTT+TGG | - | chr6.4:16776179-16776198 | MS.gene42026:intron | 25.0% |
| ! | TGAAAAATTGGAACTTTCTA+TGG | - | chr6.4:16776134-16776153 | MS.gene42026:intron | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6.4:16776154-16776173 | MS.gene42026:intron | 25.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | + | chr6.4:16775650-16775669 | None:intergenic | 25.0% |
| !! | CTTAATACTTGTTGGATATA+TGG | - | chr6.4:16776757-16776776 | MS.gene42026:CDS | 25.0% |
| !! | GTTATTGGTGATAATGATAT+TGG | - | chr6.4:16776514-16776533 | MS.gene42026:intron | 25.0% |
| !! | TCCAATACATTTTCAATGTT+TGG | + | chr6.4:16776646-16776665 | None:intergenic | 25.0% |
| !! | TCTTTATTTGATGCTGAATA+AGG | - | chr6.4:16776251-16776270 | MS.gene42026:intron | 25.0% |
| !! | TTAAAGTATTCTGAGTACAA+AGG | - | chr6.4:16775762-16775781 | MS.gene42026:CDS | 25.0% |
| !!! | ATGTTTTATGATTTTGGTGT+TGG | - | chr6.4:16775959-16775978 | MS.gene42026:CDS | 25.0% |
| !!! | GTAGATTTTAACACATTGAT+TGG | - | chr6.4:16776709-16776728 | MS.gene42026:intron | 25.0% |
| ACTCATACAATAAATTGGGA+TGG | - | chr6.4:16776484-16776503 | MS.gene42026:intron | 30.0% | |
| AGAAAATCCAGAATTCATCA+GGG | + | chr6.4:16776923-16776942 | None:intergenic | 30.0% | |
| ATTGAATATCAACGAGAAGA+TGG | - | chr6.4:16776667-16776686 | MS.gene42026:intron | 30.0% | |
| CGTGTGTTGAATTTAGATAT+GGG | - | chr6.4:16775837-16775856 | MS.gene42026:CDS | 30.0% | |
| GAAATTGTTCTATCTCCATA+TGG | + | chr6.4:16776552-16776571 | None:intergenic | 30.0% | |
| GTGACAGCTACATAAAAATA+GGG | + | chr6.4:16776222-16776241 | None:intergenic | 30.0% | |
| GTGTGTTGAATTTAGATATG+GGG | - | chr6.4:16775838-16775857 | MS.gene42026:CDS | 30.0% | |
| TCGTGTGTTGAATTTAGATA+TGG | - | chr6.4:16775836-16775855 | MS.gene42026:CDS | 30.0% | |
| TGTGACAGCTACATAAAAAT+AGG | + | chr6.4:16776223-16776242 | None:intergenic | 30.0% | |
| TTAACGAAGATTAACGATGT+AGG | - | chr6.4:16776016-16776035 | MS.gene42026:CDS | 30.0% | |
| ! | ATTGTATGAGTTGAAGACAA+AGG | + | chr6.4:16776475-16776494 | None:intergenic | 30.0% |
| ! | ATTTTCAATGTTTGGTCCAT+AGG | + | chr6.4:16776638-16776657 | None:intergenic | 30.0% |
| ! | ATTTTCTCTTAAGTAGGCTT+TGG | - | chr6.4:16776803-16776822 | MS.gene42026:CDS | 30.0% |
| ! | TTTTCAATGTTTGGTCCATA+GGG | + | chr6.4:16776637-16776656 | None:intergenic | 30.0% |
| !! | CATATTTGTTATTATGCTGC+AGG | - | chr6.4:16776357-16776376 | MS.gene42026:CDS | 30.0% |
| !! | TCCTCAATTATTTTTCTCTC+TGG | + | chr6.4:16776601-16776620 | None:intergenic | 30.0% |
| !! | TTTTAACACATTGATTGGGA+AGG | - | chr6.4:16776714-16776733 | MS.gene42026:intron | 30.0% |
| CAAGAAACTAGAAATCAACC+TGG | + | chr6.4:16775524-16775543 | None:intergenic | 35.0% | |
| CAAGATGGAAGCTGAAAAAT+TGG | - | chr6.4:16776122-16776141 | MS.gene42026:intron | 35.0% | |
| CAGAAAATCCAGAATTCATC+AGG | + | chr6.4:16776924-16776943 | None:intergenic | 35.0% | |
| CATGCAAAAACCTGAGAAAA+AGG | - | chr6.4:16775676-16775695 | MS.gene42026:intron | 35.0% | |
| GAAGAAATTTCTCATCCCTA+TGG | - | chr6.4:16776619-16776638 | MS.gene42026:CDS | 35.0% | |
| GCCAGAGAGAAAAATAATTG+AGG | - | chr6.4:16776597-16776616 | MS.gene42026:CDS | 35.0% | |
| GGCACATCCAATTATTCAAA+AGG | + | chr6.4:16775883-16775902 | None:intergenic | 35.0% | |
| GTGACATCCTTAATACTTGT+TGG | - | chr6.4:16776749-16776768 | MS.gene42026:intron | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6.4:16776164-16776183 | MS.gene42026:intron | 35.0% | |
| TGAATTTAGATATGGGGAAG+AGG | - | chr6.4:16775844-16775863 | MS.gene42026:CDS | 35.0% | |
| TGATATTCACACATTTCCCA+TGG | + | chr6.4:16776968-16776987 | None:intergenic | 35.0% | |
| ! | AACAAGACTTCCTTTTTCTC+AGG | + | chr6.4:16775689-16775708 | None:intergenic | 35.0% |
| ! | TTTTCGTGGGGAAGAAAAAT+TGG | + | chr6.4:16775445-16775464 | None:intergenic | 35.0% |
| ! | TTTTCTGTGACATTTGTGAG+AGG | - | chr6.4:16776937-16776956 | MS.gene42026:intron | 35.0% |
| !! | AAAGGAAGTCTTGTTTCTTG+AGG | - | chr6.4:16775694-16775713 | MS.gene42026:intron | 35.0% |
| !! | ACAAAATTTGCTAGGAACAC+GGG | + | chr6.4:16775499-16775518 | None:intergenic | 35.0% |
| !! | ATTTGTTATTATGCTGCAGG+AGG | - | chr6.4:16776360-16776379 | MS.gene42026:CDS | 35.0% |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6.4:16777029-16777048 | None:intergenic | 35.0% |
| !! | GACAAAATTTGCTAGGAACA+CGG | + | chr6.4:16775500-16775519 | None:intergenic | 35.0% |
| AATATGGCCCTGATGAATTC+TGG | - | chr6.4:16776913-16776932 | MS.gene42026:intron | 40.0% | |
| CTCAGAAATGCTTAGCAAGA+TGG | - | chr6.4:16776107-16776126 | MS.gene42026:intron | 40.0% | |
| GCAAAAAATGCCTCTTAGAC+AGG | - | chr6.4:16775721-16775740 | MS.gene42026:intron | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6.4:16775928-16775947 | MS.gene42026:CDS | 40.0% | |
| TCTTTCCAACTCGAATTCCA+CGG | + | chr6.4:16775473-16775492 | None:intergenic | 40.0% | |
| TGGTAGACTGAATTCCCATA+TGG | - | chr6.4:16776534-16776553 | MS.gene42026:intron | 40.0% | |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6.4:16775905-16775924 | None:intergenic | 40.0% | |
| ! | ACCTGGTGACAAAATTTGCT+AGG | + | chr6.4:16775507-16775526 | None:intergenic | 40.0% |
| ! | TCCTAGCAAATTTTGTCACC+AGG | - | chr6.4:16775503-16775522 | MS.gene42026:CDS | 40.0% |
| ! | TGAGTTGAAGACAAAGGACT+AGG | + | chr6.4:16776469-16776488 | None:intergenic | 40.0% |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6.4:16776821-16776840 | MS.gene42026:CDS | 40.0% |
| !! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6.4:16776188-16776207 | MS.gene42026:intron | 40.0% |
| !! | GAAGTGCCGACAAGAAATAA+AGG | - | chr6.4:16775641-16775660 | MS.gene42026:CDS | 40.0% |
| !! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6.4:16776185-16776204 | MS.gene42026:intron | 40.0% |
| !!! | ATTCCACGGGATTTTTTTCG+TGG | + | chr6.4:16775459-16775478 | None:intergenic | 40.0% |
| !!! | TTCCACGGGATTTTTTTCGT+GGG | + | chr6.4:16775458-16775477 | None:intergenic | 40.0% |
| AAATCCCGTGGAATTCGAGT+TGG | - | chr6.4:16775465-16775484 | MS.gene42026:CDS | 45.0% | |
| AACATTTCCAGCCCAATCCT+CGG | + | chr6.4:16776434-16776453 | None:intergenic | 45.0% | |
| ACACGTAAAACCAGATGCCT+TGG | + | chr6.4:16776085-16776104 | None:intergenic | 45.0% | |
| ATATTGCCCGACTCATTGTG+TGG | - | chr6.4:16776399-16776418 | MS.gene42026:CDS | 45.0% | |
| ATTTGTGAGAGGTGGTTCCA+TGG | - | chr6.4:16776948-16776967 | MS.gene42026:intron | 45.0% | |
| CTTTCCAACTCGAATTCCAC+GGG | + | chr6.4:16775472-16775491 | None:intergenic | 45.0% | |
| GAGGCAGATGAAGATGAACA+CGG | - | chr6.4:16776861-16776880 | MS.gene42026:intron | 45.0% | |
| GGATGTGGAAGAACTTTGTG+AGG | - | chr6.4:16776842-16776861 | MS.gene42026:intron | 45.0% | |
| GTGAGTCAAACCTGTCTAAG+AGG | + | chr6.4:16775734-16775753 | None:intergenic | 45.0% | |
| GTTACCTAAAGACGAGGATG+TGG | - | chr6.4:16776827-16776846 | MS.gene42026:CDS | 45.0% | |
| TCTGTGACATTTGTGAGAGG+TGG | - | chr6.4:16776940-16776959 | MS.gene42026:intron | 45.0% | |
| TCTTCCACATCCTCGTCTTT+AGG | + | chr6.4:16776834-16776853 | None:intergenic | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6.4:16775904-16775923 | None:intergenic | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6.4:16776499-16776518 | MS.gene42026:intron | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6.4:16776977-16776996 | MS.gene42026:CDS | 45.0% | |
| TTTGTGAGAGGTGGTTCCAT+GGG | - | chr6.4:16776949-16776968 | MS.gene42026:intron | 45.0% | |
| !!! | TCCACGGGATTTTTTTCGTG+GGG | + | chr6.4:16775457-16775476 | None:intergenic | 45.0% |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6.4:16776060-16776079 | None:intergenic | 50.0% | |
| CCATTGCCACACAATGAGTC+GGG | + | chr6.4:16776408-16776427 | None:intergenic | 50.0% | |
| CCCATTGCCACACAATGAGT+CGG | + | chr6.4:16776409-16776428 | None:intergenic | 50.0% | |
| CCGACTCATTGTGTGGCAAT+GGG | - | chr6.4:16776406-16776425 | MS.gene42026:CDS | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | + | chr6.4:16776992-16777011 | None:intergenic | 50.0% | |
| GAACACGGAGAGAACTCATG+CGG | - | chr6.4:16776876-16776895 | MS.gene42026:intron | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | + | chr6.4:16776991-16777010 | None:intergenic | 50.0% | |
| GGCACTTGTTCGTATAGCCA+AGG | - | chr6.4:16776065-16776084 | MS.gene42026:CDS | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6.4:16776976-16776995 | MS.gene42026:CDS | 50.0% | |
| TCCCCACGAAAAAAATCCCG+TGG | - | chr6.4:16775453-16775472 | MS.gene42026:CDS | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | + | chr6.4:16776993-16777012 | None:intergenic | 50.0% | |
| ! | GTTCGTATAGCCAAGGCATC+TGG | - | chr6.4:16776072-16776091 | MS.gene42026:CDS | 50.0% |
| ! | TAAAGCATCAGCCGCCTACA+GGG | - | chr6.4:16776043-16776062 | MS.gene42026:CDS | 50.0% |
| CCCGACTCATTGTGTGGCAA+TGG | - | chr6.4:16776405-16776424 | MS.gene42026:CDS | 55.0% | |
| GAGAACTCATGCGGTGCTTG+CGG | - | chr6.4:16776885-16776904 | MS.gene42026:intron | 55.0% | |
| GGTGCTTGCGGTGAGCAATA+TGG | - | chr6.4:16776897-16776916 | MS.gene42026:intron | 55.0% | |
| TGGATGTGCCCGAAGTGTAG+AGG | - | chr6.4:16775893-16775912 | MS.gene42026:CDS | 55.0% | |
| ! | AAAGCATCAGCCGCCTACAG+GGG | - | chr6.4:16776044-16776063 | MS.gene42026:CDS | 55.0% |
| ! | CTAAAGCATCAGCCGCCTAC+AGG | - | chr6.4:16776042-16776061 | MS.gene42026:CDS | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6.4:16776414-16776433 | MS.gene42026:CDS | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6.4:16776420-16776439 | MS.gene42026:CDS | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6.4:16776419-16776438 | MS.gene42026:CDS | 55.0% |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6.4:16776057-16776076 | None:intergenic | 60.0% | |
| !! | ATGGGTACCGAGGATTGGGC+TGG | - | chr6.4:16776424-16776443 | MS.gene42026:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 16775435 | 16777061 | 16775435 | ID=MS.gene42026 |
| chr6.4 | mRNA | 16775435 | 16777061 | 16775435 | ID=MS.gene42026.t1;Parent=MS.gene42026 |
| chr6.4 | exon | 16776972 | 16777061 | 16776972 | ID=MS.gene42026.t1.exon1;Parent=MS.gene42026.t1 |
| chr6.4 | CDS | 16776972 | 16777061 | 16776972 | ID=cds.MS.gene42026.t1;Parent=MS.gene42026.t1 |
| chr6.4 | exon | 16776754 | 16776851 | 16776754 | ID=MS.gene42026.t1.exon2;Parent=MS.gene42026.t1 |
| chr6.4 | CDS | 16776754 | 16776851 | 16776754 | ID=cds.MS.gene42026.t1;Parent=MS.gene42026.t1 |
| chr6.4 | exon | 16776557 | 16776643 | 16776557 | ID=MS.gene42026.t1.exon3;Parent=MS.gene42026.t1 |
| chr6.4 | CDS | 16776557 | 16776643 | 16776557 | ID=cds.MS.gene42026.t1;Parent=MS.gene42026.t1 |
| chr6.4 | exon | 16776290 | 16776458 | 16776290 | ID=MS.gene42026.t1.exon4;Parent=MS.gene42026.t1 |
| chr6.4 | CDS | 16776290 | 16776458 | 16776290 | ID=cds.MS.gene42026.t1;Parent=MS.gene42026.t1 |
| chr6.4 | exon | 16775761 | 16776117 | 16775761 | ID=MS.gene42026.t1.exon5;Parent=MS.gene42026.t1 |
| chr6.4 | CDS | 16775761 | 16776117 | 16775761 | ID=cds.MS.gene42026.t1;Parent=MS.gene42026.t1 |
| chr6.4 | exon | 16775435 | 16775677 | 16775435 | ID=MS.gene42026.t1.exon6;Parent=MS.gene42026.t1 |
| chr6.4 | CDS | 16775435 | 16775677 | 16775435 | ID=cds.MS.gene42026.t1;Parent=MS.gene42026.t1 |
| Gene Sequence |
| Protein sequence |
