Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42029.t1 | XP_012068916.1 | 71.4 | 84 | 22 | 2 | 147 | 230 | 175 | 256 | 9.50E-27 | 130.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42029.t1 | Q9FFF5 | 62.7 | 67 | 25 | 0 | 160 | 226 | 172 | 238 | 5.1e-21 | 102.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42029.t1 | A0A067KX82 | 73.4 | 79 | 19 | 2 | 152 | 230 | 181 | 257 | 9.9e-26 | 126.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene42029.t1 | TF | Alfin-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42029.t1 | MTR_8g019520 | 75.000 | 84 | 21 | 0 | 146 | 229 | 173 | 256 | 4.19e-31 | 115 |
| MS.gene42029.t1 | MTR_8g019520 | 75.000 | 84 | 21 | 0 | 146 | 229 | 172 | 255 | 4.51e-31 | 115 |
| MS.gene42029.t1 | MTR_2g099500 | 70.690 | 58 | 17 | 0 | 172 | 229 | 193 | 250 | 1.75e-25 | 100 |
| MS.gene42029.t1 | MTR_0024s0330 | 53.333 | 105 | 46 | 2 | 27 | 131 | 78 | 179 | 4.49e-25 | 103 |
| MS.gene42029.t1 | MTR_1g015185 | 72.222 | 54 | 14 | 1 | 176 | 229 | 210 | 262 | 1.84e-22 | 92.8 |
| MS.gene42029.t1 | MTR_6g017265 | 53.061 | 98 | 43 | 2 | 27 | 124 | 87 | 181 | 2.87e-22 | 95.1 |
| MS.gene42029.t1 | MTR_4g134510 | 67.308 | 52 | 17 | 0 | 175 | 226 | 201 | 252 | 6.35e-21 | 88.6 |
| MS.gene42029.t1 | MTR_2g040990 | 67.857 | 56 | 15 | 2 | 176 | 229 | 198 | 252 | 4.16e-20 | 86.3 |
| MS.gene42029.t1 | MTR_4g015830 | 64.815 | 54 | 18 | 1 | 176 | 229 | 187 | 239 | 5.61e-19 | 82.8 |
| MS.gene42029.t1 | MTR_7g068590 | 64.583 | 48 | 17 | 0 | 176 | 223 | 189 | 236 | 3.58e-18 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42029.t1 | AT3G42790 | 70.000 | 60 | 17 | 1 | 171 | 230 | 192 | 250 | 1.96e-24 | 97.8 |
| MS.gene42029.t1 | AT5G20510 | 67.797 | 59 | 18 | 1 | 171 | 229 | 161 | 218 | 1.15e-23 | 94.7 |
| MS.gene42029.t1 | AT5G20510 | 67.797 | 59 | 18 | 1 | 171 | 229 | 202 | 259 | 1.95e-23 | 95.1 |
| MS.gene42029.t1 | AT5G26210 | 73.684 | 57 | 14 | 1 | 174 | 230 | 200 | 255 | 4.79e-23 | 94.0 |
| MS.gene42029.t1 | AT2G02470 | 72.222 | 54 | 14 | 1 | 176 | 229 | 203 | 255 | 2.60e-22 | 92.0 |
| MS.gene42029.t1 | AT2G02470 | 72.222 | 54 | 14 | 1 | 176 | 229 | 194 | 246 | 2.95e-22 | 91.7 |
| MS.gene42029.t1 | AT1G14510 | 65.455 | 55 | 19 | 0 | 176 | 230 | 198 | 252 | 9.04e-22 | 90.5 |
| MS.gene42029.t1 | AT5G05610 | 69.231 | 52 | 16 | 0 | 171 | 222 | 183 | 234 | 1.07e-20 | 87.4 |
| MS.gene42029.t1 | AT5G05610 | 69.231 | 52 | 16 | 0 | 171 | 222 | 183 | 234 | 1.07e-20 | 87.4 |
| MS.gene42029.t1 | AT3G11200 | 39.416 | 137 | 72 | 4 | 86 | 222 | 101 | 226 | 1.83e-19 | 84.0 |
| MS.gene42029.t1 | AT3G11200 | 39.416 | 137 | 72 | 4 | 86 | 222 | 114 | 239 | 1.97e-19 | 84.3 |
| MS.gene42029.t1 | AT5G38690 | 53.731 | 67 | 31 | 0 | 27 | 93 | 64 | 130 | 7.70e-18 | 82.4 |
| MS.gene42029.t1 | AT5G38690 | 53.731 | 67 | 31 | 0 | 27 | 93 | 64 | 130 | 7.70e-18 | 82.4 |
| MS.gene42029.t1 | AT1G67780 | 55.000 | 60 | 27 | 0 | 27 | 86 | 67 | 126 | 3.09e-15 | 74.7 |
| MS.gene42029.t1 | AT1G67780 | 55.000 | 60 | 27 | 0 | 27 | 86 | 67 | 126 | 3.09e-15 | 74.7 |
| MS.gene42029.t1 | AT1G67270 | 52.632 | 57 | 27 | 0 | 30 | 86 | 62 | 118 | 2.82e-12 | 65.9 |
Find 64 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCATATTCTTCCTTTAT+AGG | 0.158707 | 6.4:+16747645 | None:intergenic |
| CAGAAAATCCAGAATTTATC+AGG | 0.261065 | 6.4:+16746855 | None:intergenic |
| TCTTCCACCTCCTCGTCTTT+AGG | 0.273338 | 6.4:+16746945 | None:intergenic |
| TACTAATGTTGGGCCTATAA+AGG | 0.359306 | 6.4:-16747658 | MS.gene42029:CDS |
| GGCACATCCAATTATTCAAA+AGG | 0.404163 | 6.4:+16747939 | None:intergenic |
| TGCAAATGCCTCTACACTTC+GGG | 0.407999 | 6.4:+16747918 | None:intergenic |
| GGCAATGGGTACCGAGGATT+GGG | 0.415248 | 6.4:-16747402 | MS.gene42029:CDS |
| ATATAAGCAGACTACGGCTT+TGG | 0.416632 | 6.4:-16746973 | MS.gene42029:intron |
| TATAAAGGAAGAATATGCTT+TGG | 0.417141 | 6.4:-16747643 | MS.gene42029:CDS |
| ATAAAGGAAGAATATGCTTT+GGG | 0.425102 | 6.4:-16747642 | MS.gene42029:CDS |
| GTTCGTATAGCCAAGGCATC+TGG | 0.430043 | 6.4:-16747747 | MS.gene42029:CDS |
| ATGGGTAATAATACTAATGT+TGG | 0.432893 | 6.4:-16747669 | MS.gene42029:CDS |
| TCGATATGCTTAGCCCTAGC+AGG | 0.441225 | 6.4:+16746786 | None:intergenic |
| CTAAAGTGTCAGCCGCCTAC+AGG | 0.448914 | 6.4:-16747777 | MS.gene42029:CDS |
| GGTGCATGCGGTGAGCAATA+TGG | 0.455947 | 6.4:-16746879 | MS.gene42029:CDS |
| TGGCAATGGGTACCGAGGAT+TGG | 0.456031 | 6.4:-16747403 | MS.gene42029:CDS |
| CTCTTGTTGTTATTGCATGA+TGG | 0.456815 | 6.4:+16746750 | None:intergenic |
| CTCAGAAATGCTTAGCAAGA+TGG | 0.474202 | 6.4:-16747712 | MS.gene42029:CDS |
| TCCTAGCAAATTTCGTCACC+AGG | 0.477021 | 6.4:-16748313 | MS.gene42029:intron |
| GTGTGAATATCACCCCTGCT+AGG | 0.500091 | 6.4:-16746800 | MS.gene42029:CDS |
| TGGGTAATAATACTAATGTT+GGG | 0.503347 | 6.4:-16747668 | MS.gene42029:CDS |
| AATATGGCCCTGATAAATTC+TGG | 0.503480 | 6.4:-16746863 | MS.gene42029:CDS |
| AACATTTCTTGCCCAATCCT+CGG | 0.505967 | 6.4:+16747391 | None:intergenic |
| AACATTAGTATTATTACCCA+TGG | 0.506224 | 6.4:+16747671 | None:intergenic |
| TAAAGTGTCAGCCGCCTACA+GGG | 0.522777 | 6.4:-16747776 | MS.gene42029:CDS |
| CCCGACTCATTGTGTGGCAA+TGG | 0.526130 | 6.4:-16747417 | MS.gene42029:CDS |
| CTTTCCAACTCGAATTCCAC+GGG | 0.526130 | 6.4:+16748347 | None:intergenic |
| TTGCAAATGCCTCTACACTT+CGG | 0.528376 | 6.4:+16747917 | None:intergenic |
| ATATGGGGAAGAGGCAAAAG+AGG | 0.532508 | 6.4:-16747966 | MS.gene42029:CDS |
| TGAATTTAGATATGGGGAAG+AGG | 0.541078 | 6.4:-16747975 | MS.gene42029:intron |
| ACGAAATTTGCTAGGAACAC+GGG | 0.546647 | 6.4:+16748320 | None:intergenic |
| CCGACTCATTGTGTGGCAAT+GGG | 0.547349 | 6.4:-16747416 | MS.gene42029:CDS |
| ACACGCAAAACCAGATGCCT+TGG | 0.548018 | 6.4:+16747737 | None:intergenic |
| CCATTGCCACACAATGAGTC+GGG | 0.548885 | 6.4:+16747417 | None:intergenic |
| AAATCCCGTGGAATTCGAGT+TGG | 0.550349 | 6.4:-16748351 | MS.gene42029:CDS |
| TTTGTGAAAGGTGGTTCCAT+GGG | 0.551002 | 6.4:-16746827 | MS.gene42029:CDS |
| AACAAGAGAGCTCGCTCTTG+AGG | 0.551378 | 6.4:-16746735 | None:intergenic |
| GTTACCTAAAGACGAGGAGG+TGG | 0.556937 | 6.4:-16746949 | MS.gene42029:CDS |
| GACGAAATTTGCTAGGAACA+CGG | 0.567296 | 6.4:+16748319 | None:intergenic |
| TGTGAATATCACCCCTGCTA+GGG | 0.567860 | 6.4:-16746799 | MS.gene42029:CDS |
| CCCATTGCCACACAATGAGT+CGG | 0.571139 | 6.4:+16747416 | None:intergenic |
| CGATATGCTTAGCCCTAGCA+GGG | 0.574696 | 6.4:+16746787 | None:intergenic |
| GTTTGTGAAAGGTGGTTCCA+TGG | 0.576614 | 6.4:-16746828 | MS.gene42029:CDS |
| TCTTTCCAACTCGAATTCCA+CGG | 0.576672 | 6.4:+16748346 | None:intergenic |
| TGATATTCACACATTTCCCA+TGG | 0.578749 | 6.4:+16746811 | None:intergenic |
| TCTGTGACGTTTGTGAAAGG+TGG | 0.583631 | 6.4:-16746836 | MS.gene42029:CDS |
| GGCACTTGTTCGTATAGCCA+AGG | 0.607034 | 6.4:-16747754 | MS.gene42029:CDS |
| GTGTGTTGAATTTAGATATG+GGG | 0.609714 | 6.4:-16747981 | MS.gene42029:intron |
| GGAAGAATATGCTTTGGGAA+AGG | 0.614050 | 6.4:-16747637 | MS.gene42029:intron |
| AGAAAATCCAGAATTTATCA+GGG | 0.616292 | 6.4:+16746856 | None:intergenic |
| TGGATGTGCCCGAAGTGTAG+AGG | 0.628364 | 6.4:-16747926 | MS.gene42029:CDS |
| ACCTGGTGACGAAATTTGCT+AGG | 0.628373 | 6.4:+16748312 | None:intergenic |
| AAAGTGTCAGCCGCCTACAG+GGG | 0.639872 | 6.4:-16747775 | MS.gene42029:CDS |
| GGAGGTGGAAGAACTTTGTG+AGG | 0.644067 | 6.4:-16746934 | MS.gene42029:CDS |
| CGAACAAGTGCCCCTGTAGG+CGG | 0.661590 | 6.4:+16747765 | None:intergenic |
| TTGTGTGGCAATGGGTACCG+AGG | 0.665786 | 6.4:-16747408 | MS.gene42029:CDS |
| ATATTGCCCGACTCATTGTG+TGG | 0.684429 | 6.4:-16747423 | MS.gene42029:CDS |
| TTTGGAGTTACCTAAAGACG+AGG | 0.685384 | 6.4:-16746955 | MS.gene42029:CDS |
| GGAGTTACCTAAAGACGAGG+AGG | 0.687422 | 6.4:-16746952 | MS.gene42029:CDS |
| ATACGAACAAGTGCCCCTGT+AGG | 0.687555 | 6.4:+16747762 | None:intergenic |
| GATAACTCATGTGGTGCATG+CGG | 0.701484 | 6.4:-16746891 | MS.gene42029:CDS |
| GAACACGGAGATAACTCATG+TGG | 0.715888 | 6.4:-16746900 | MS.gene42029:CDS |
| GAGGAAGATGAAGATGAACA+CGG | 0.725244 | 6.4:-16746915 | MS.gene42029:CDS |
| GATATGCTTAGCCCTAGCAG+GGG | 0.762022 | 6.4:+16746788 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAATAATTTAAAATAAAAAG+TGG | + | chr6.4:16747054-16747073 | None:intergenic | 10.0% |
| !!! | ATATTGTTTATTTTTTCACA+TGG | - | chr6.4:16746920-16746939 | MS.gene42029:CDS | 15.0% |
| !!! | TAAAACATGTTTTATGATTT+TGG | - | chr6.4:16747251-16747270 | MS.gene42029:intron | 15.0% |
| !! | ATGACAACTACATAAATATA+GGG | + | chr6.4:16747517-16747536 | None:intergenic | 20.0% |
| !! | TATGACAACTACATAAATAT+AGG | + | chr6.4:16747518-16747537 | None:intergenic | 20.0% |
| !! | TTAAATTATTCTGAGTACAA+AGG | - | chr6.4:16747063-16747082 | MS.gene42029:intron | 20.0% |
| !! | TTCAACTCACAAAATAAATT+GGG | - | chr6.4:16747774-16747793 | MS.gene42029:CDS | 20.0% |
| !!! | TAGATTTTAACACATTGATT+GGG | - | chr6.4:16748002-16748021 | MS.gene42029:intron | 20.0% |
| !!! | TTTTTATTTGATGCTGAATA+AGG | - | chr6.4:16747546-16747565 | MS.gene42029:intron | 20.0% |
| ! | AAAGCATATTCTTCCTTTAT+AGG | + | chr6.4:16747475-16747494 | None:intergenic | 25.0% |
| ! | AACATTAGTATTATTACCCA+TGG | + | chr6.4:16747449-16747468 | None:intergenic | 25.0% |
| ! | AGAAAATCCAGAATTTATCA+GGG | + | chr6.4:16748264-16748283 | None:intergenic | 25.0% |
| ! | ATAAAGGAAGAATATGCTTT+GGG | - | chr6.4:16747475-16747494 | MS.gene42029:intron | 25.0% |
| ! | ATCATTATCACCAATAACAA+TGG | + | chr6.4:16747806-16747825 | None:intergenic | 25.0% |
| ! | ATGGGTAATAATACTAATGT+TGG | - | chr6.4:16747448-16747467 | MS.gene42029:intron | 25.0% |
| ! | CTTCAACTCACAAAATAAAT+TGG | - | chr6.4:16747773-16747792 | MS.gene42029:CDS | 25.0% |
| ! | TATAAAGGAAGAATATGCTT+TGG | - | chr6.4:16747474-16747493 | MS.gene42029:intron | 25.0% |
| ! | TGGGTAATAATACTAATGTT+GGG | - | chr6.4:16747449-16747468 | MS.gene42029:intron | 25.0% |
| !! | AAGTTGATCTATCTCTATAT+GGG | + | chr6.4:16747845-16747864 | None:intergenic | 25.0% |
| !! | AGGTAAACCTTTTGAATAAT+TGG | - | chr6.4:16747171-16747190 | MS.gene42029:intron | 25.0% |
| !! | CAAAAACCTTTATTTCTTGT+CGG | + | chr6.4:16746951-16746970 | None:intergenic | 25.0% |
| !! | GTTAATACTTGTTGGATATA+TGG | - | chr6.4:16748049-16748068 | MS.gene42029:intron | 25.0% |
| !! | GTTATTGGTGATAATGATAA+TGG | - | chr6.4:16747808-16747827 | MS.gene42029:intron | 25.0% |
| !! | TACTTGATAATAGTGCTATA+AGG | - | chr6.4:16747869-16747888 | MS.gene42029:intron | 25.0% |
| !!! | ATGTTTTATGATTTTGGTGT+TGG | - | chr6.4:16747257-16747276 | MS.gene42029:intron | 25.0% |
| !!! | GTAGATTTTAACACATTGAT+TGG | - | chr6.4:16748001-16748020 | MS.gene42029:intron | 25.0% |
| ACCAAACATTGAAAATGTAC+TGG | - | chr6.4:16747934-16747953 | MS.gene42029:CDS | 30.0% | |
| ACTCACAAAATAAATTGGGA+TGG | - | chr6.4:16747778-16747797 | MS.gene42029:CDS | 30.0% | |
| CAGAAAATCCAGAATTTATC+AGG | + | chr6.4:16748265-16748284 | None:intergenic | 30.0% | |
| CATCTAATATAAGCAGACTA+CGG | - | chr6.4:16748138-16748157 | MS.gene42029:intron | 30.0% | |
| CGTGTGTTGAATTTAGATAT+GGG | - | chr6.4:16747135-16747154 | MS.gene42029:intron | 30.0% | |
| GTGTGTTGAATTTAGATATG+GGG | - | chr6.4:16747136-16747155 | MS.gene42029:intron | 30.0% | |
| TCGTGTGTTGAATTTAGATA+TGG | - | chr6.4:16747134-16747153 | MS.gene42029:intron | 30.0% | |
| TTAACGAAGATTAACCATGT+AGG | - | chr6.4:16747314-16747333 | MS.gene42029:intron | 30.0% | |
| ! | GAAGTTGATCTATCTCTATA+TGG | + | chr6.4:16747846-16747865 | None:intergenic | 30.0% |
| ! | TCCAGTACATTTTCAATGTT+TGG | + | chr6.4:16747938-16747957 | None:intergenic | 30.0% |
| !! | AGTTCAATTTGTTGCTAACA+TGG | - | chr6.4:16746897-16746916 | MS.gene42029:CDS | 30.0% |
| !! | CATATTTGTTATTATGCTGC+AGG | - | chr6.4:16747652-16747671 | MS.gene42029:CDS | 30.0% |
| !! | TATTTTGTGAGTTGAAGACA+AGG | + | chr6.4:16747770-16747789 | None:intergenic | 30.0% |
| !! | TTTTAACACATTGATTGGGA+AGG | - | chr6.4:16748006-16748025 | MS.gene42029:intron | 30.0% |
| AATATGGCCCTGATAAATTC+TGG | - | chr6.4:16748254-16748273 | MS.gene42029:intron | 35.0% | |
| ACGACATCGTTAATACTTGT+TGG | - | chr6.4:16748041-16748060 | MS.gene42029:intron | 35.0% | |
| CAAGAAACTAGAAATCAACC+TGG | + | chr6.4:16746825-16746844 | None:intergenic | 35.0% | |
| CAAGATGGAAGCTGAAAAAT+TGG | - | chr6.4:16747420-16747439 | MS.gene42029:CDS | 35.0% | |
| CATGCAAAAACCTGAGAAAA+AGG | - | chr6.4:16746977-16746996 | MS.gene42029:intron | 35.0% | |
| GGCACATCCAATTATTCAAA+AGG | + | chr6.4:16747181-16747200 | None:intergenic | 35.0% | |
| TACTAATGTTGGGCCTATAA+AGG | - | chr6.4:16747459-16747478 | MS.gene42029:intron | 35.0% | |
| TGAATTTAGATATGGGGAAG+AGG | - | chr6.4:16747142-16747161 | MS.gene42029:intron | 35.0% | |
| TGATATTCACACATTTCCCA+TGG | + | chr6.4:16748309-16748328 | None:intergenic | 35.0% | |
| ! | AACAAGACTTCCTTTTTCTC+AGG | + | chr6.4:16746990-16747009 | None:intergenic | 35.0% |
| ! | AGCTGAAAAATTGGTTTCCA+TGG | - | chr6.4:16747429-16747448 | MS.gene42029:CDS | 35.0% |
| ! | ATTTTCAATGTTTGGTCCAG+AGG | + | chr6.4:16747930-16747949 | None:intergenic | 35.0% |
| ! | GCTGAAAAATTGGTTTCCAT+GGG | - | chr6.4:16747430-16747449 | MS.gene42029:CDS | 35.0% |
| ! | TTTTCAATGTTTGGTCCAGA+GGG | + | chr6.4:16747929-16747948 | None:intergenic | 35.0% |
| ! | TTTTCGTGGGGAAGAAAAAT+TGG | + | chr6.4:16746747-16746766 | None:intergenic | 35.0% |
| ! | TTTTCTGTGACGTTTGTGAA+AGG | - | chr6.4:16748278-16748297 | MS.gene42029:intron | 35.0% |
| !! | AAAGGAAGTCTTGTTTCTTG+AGG | - | chr6.4:16746995-16747014 | MS.gene42029:intron | 35.0% |
| !! | ATTTGTTATTATGCTGCAGG+AGG | - | chr6.4:16747655-16747674 | MS.gene42029:CDS | 35.0% |
| !! | CTCTTGTTGTTATTGCATGA+TGG | + | chr6.4:16748370-16748389 | None:intergenic | 35.0% |
| AACATTTCTTGCCCAATCCT+CGG | + | chr6.4:16747729-16747748 | None:intergenic | 40.0% | |
| AGGCCAGAGAGAAAAATATG+AGG | - | chr6.4:16747889-16747908 | MS.gene42029:intron | 40.0% | |
| ATATAAGCAGACTACGGCTT+TGG | - | chr6.4:16748144-16748163 | MS.gene42029:intron | 40.0% | |
| CTCAGAAATGCTTAGCAAGA+TGG | - | chr6.4:16747405-16747424 | MS.gene42029:CDS | 40.0% | |
| GAGGAAGATGAAGATGAACA+CGG | - | chr6.4:16748202-16748221 | MS.gene42029:intron | 40.0% | |
| GGCCAGAGAGAAAAATATGA+GGG | - | chr6.4:16747890-16747909 | MS.gene42029:intron | 40.0% | |
| TAGTGTGTGCATGTAAGTTG+TGG | - | chr6.4:16747226-16747245 | MS.gene42029:intron | 40.0% | |
| TCTTTCCAACTCGAATTCCA+CGG | + | chr6.4:16746774-16746793 | None:intergenic | 40.0% | |
| TGACACTTTAGTCTCCTACA+TGG | + | chr6.4:16747331-16747350 | None:intergenic | 40.0% | |
| TTGCAAATGCCTCTACACTT+CGG | + | chr6.4:16747203-16747222 | None:intergenic | 40.0% | |
| TTTGTGAAAGGTGGTTCCAT+GGG | - | chr6.4:16748290-16748309 | MS.gene42029:intron | 40.0% | |
| ! | CTCCCTCATATTTTTCTCTC+TGG | + | chr6.4:16747895-16747914 | None:intergenic | 40.0% |
| ! | TTTGGAGTTACCTAAAGACG+AGG | - | chr6.4:16748162-16748181 | MS.gene42029:intron | 40.0% |
| !! | ACGAAATTTGCTAGGAACAC+GGG | + | chr6.4:16746800-16746819 | None:intergenic | 40.0% |
| !! | AGAATATGCTTTGGGAAAGG+TGG | - | chr6.4:16747483-16747502 | MS.gene42029:intron | 40.0% |
| !! | GAAGTGCCGACAAGAAATAA+AGG | - | chr6.4:16746942-16746961 | MS.gene42029:CDS | 40.0% |
| !! | GACGAAATTTGCTAGGAACA+CGG | + | chr6.4:16746801-16746820 | None:intergenic | 40.0% |
| !! | GGAAGAATATGCTTTGGGAA+AGG | - | chr6.4:16747480-16747499 | MS.gene42029:intron | 40.0% |
| !!! | AATTCCACGGGATTTTTTCG+TGG | + | chr6.4:16746761-16746780 | None:intergenic | 40.0% |
| !!! | ACCTGTCTAAGAGGCATTTT+TGG | + | chr6.4:16747026-16747045 | None:intergenic | 40.0% |
| !!! | ATTCCACGGGATTTTTTCGT+GGG | + | chr6.4:16746760-16746779 | None:intergenic | 40.0% |
| AAATCCCGTGGAATTCGAGT+TGG | - | chr6.4:16746766-16746785 | MS.gene42029:CDS | 45.0% | |
| ATATGGGGAAGAGGCAAAAG+AGG | - | chr6.4:16747151-16747170 | MS.gene42029:intron | 45.0% | |
| ATATTGCCCGACTCATTGTG+TGG | - | chr6.4:16747694-16747713 | MS.gene42029:CDS | 45.0% | |
| CTTTCCAACTCGAATTCCAC+GGG | + | chr6.4:16746773-16746792 | None:intergenic | 45.0% | |
| GAACACGGAGATAACTCATG+TGG | - | chr6.4:16748217-16748236 | MS.gene42029:intron | 45.0% | |
| GATAACTCATGTGGTGCATG+CGG | - | chr6.4:16748226-16748245 | MS.gene42029:intron | 45.0% | |
| GCCAAAAATGCCTCTTAGAC+AGG | - | chr6.4:16747022-16747041 | MS.gene42029:intron | 45.0% | |
| GGAGAAATTTCTCATCCCTC+TGG | - | chr6.4:16747911-16747930 | MS.gene42029:CDS | 45.0% | |
| GTTTGTGAAAGGTGGTTCCA+TGG | - | chr6.4:16748289-16748308 | MS.gene42029:intron | 45.0% | |
| TCCTAGCAAATTTCGTCACC+AGG | - | chr6.4:16746804-16746823 | MS.gene42029:CDS | 45.0% | |
| TCTGTGACGTTTGTGAAAGG+TGG | - | chr6.4:16748281-16748300 | MS.gene42029:intron | 45.0% | |
| TGCAAATGCCTCTACACTTC+GGG | + | chr6.4:16747202-16747221 | None:intergenic | 45.0% | |
| TGGGATGGCACCATTGTTAT+TGG | - | chr6.4:16747793-16747812 | MS.gene42029:intron | 45.0% | |
| TGTGAATATCACCCCTGCTA+GGG | - | chr6.4:16748318-16748337 | MS.gene42029:CDS | 45.0% | |
| ! | ACCTGGTGACGAAATTTGCT+AGG | + | chr6.4:16746808-16746827 | None:intergenic | 45.0% |
| ! | GTGAGTTGAAGACAAGGACT+AGG | + | chr6.4:16747764-16747783 | None:intergenic | 45.0% |
| !!! | TTCCACGGGATTTTTTCGTG+GGG | + | chr6.4:16746759-16746778 | None:intergenic | 45.0% |
| !!! | AATAATTTAAAATAAAAAGT+GGG | + | chr6.4:16747053-16747072 | None:intergenic | 5.0% |
| ACACGCAAAACCAGATGCCT+TGG | + | chr6.4:16747383-16747402 | None:intergenic | 50.0% | |
| ATACGAACAAGTGCCCCTGT+AGG | + | chr6.4:16747358-16747377 | None:intergenic | 50.0% | |
| CCATTGCCACACAATGAGTC+GGG | + | chr6.4:16747703-16747722 | None:intergenic | 50.0% | |
| CCCATTGCCACACAATGAGT+CGG | + | chr6.4:16747704-16747723 | None:intergenic | 50.0% | |
| CCGACTCATTGTGTGGCAAT+GGG | - | chr6.4:16747701-16747720 | MS.gene42029:CDS | 50.0% | |
| CGATATGCTTAGCCCTAGCA+GGG | + | chr6.4:16748333-16748352 | None:intergenic | 50.0% | |
| GATATGCTTAGCCCTAGCAG+GGG | + | chr6.4:16748332-16748351 | None:intergenic | 50.0% | |
| GGAGGTGGAAGAACTTTGTG+AGG | - | chr6.4:16748183-16748202 | MS.gene42029:intron | 50.0% | |
| GGAGTTACCTAAAGACGAGG+AGG | - | chr6.4:16748165-16748184 | MS.gene42029:intron | 50.0% | |
| GGCACTTGTTCGTATAGCCA+AGG | - | chr6.4:16747363-16747382 | MS.gene42029:intron | 50.0% | |
| GTGGGTCAAACCTGTCTAAG+AGG | + | chr6.4:16747035-16747054 | None:intergenic | 50.0% | |
| GTGTGAATATCACCCCTGCT+AGG | - | chr6.4:16748317-16748336 | MS.gene42029:CDS | 50.0% | |
| GTTACCTAAAGACGAGGAGG+TGG | - | chr6.4:16748168-16748187 | MS.gene42029:intron | 50.0% | |
| TCGATATGCTTAGCCCTAGC+AGG | + | chr6.4:16748334-16748353 | None:intergenic | 50.0% | |
| TCTTCCACCTCCTCGTCTTT+AGG | + | chr6.4:16748175-16748194 | None:intergenic | 50.0% | |
| TTCCCCACGAAAAAATCCCG+TGG | - | chr6.4:16746754-16746773 | MS.gene42029:CDS | 50.0% | |
| ! | GTTCGTATAGCCAAGGCATC+TGG | - | chr6.4:16747370-16747389 | MS.gene42029:intron | 50.0% |
| ! | TAAAGTGTCAGCCGCCTACA+GGG | - | chr6.4:16747341-16747360 | MS.gene42029:intron | 50.0% |
| CCCGACTCATTGTGTGGCAA+TGG | - | chr6.4:16747700-16747719 | MS.gene42029:CDS | 55.0% | |
| GGTGCATGCGGTGAGCAATA+TGG | - | chr6.4:16748238-16748257 | MS.gene42029:intron | 55.0% | |
| TGGATGTGCCCGAAGTGTAG+AGG | - | chr6.4:16747191-16747210 | MS.gene42029:intron | 55.0% | |
| ! | AAAGTGTCAGCCGCCTACAG+GGG | - | chr6.4:16747342-16747361 | MS.gene42029:intron | 55.0% |
| ! | CTAAAGTGTCAGCCGCCTAC+AGG | - | chr6.4:16747340-16747359 | MS.gene42029:intron | 55.0% |
| ! | TTGTGTGGCAATGGGTACCG+AGG | - | chr6.4:16747709-16747728 | MS.gene42029:CDS | 55.0% |
| !! | GGCAATGGGTACCGAGGATT+GGG | - | chr6.4:16747715-16747734 | MS.gene42029:CDS | 55.0% |
| !! | TGGCAATGGGTACCGAGGAT+TGG | - | chr6.4:16747714-16747733 | MS.gene42029:CDS | 55.0% |
| CGAACAAGTGCCCCTGTAGG+CGG | + | chr6.4:16747355-16747374 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 16746737 | 16748402 | 16746737 | ID=MS.gene42029 |
| chr6.4 | mRNA | 16746737 | 16748402 | 16746737 | ID=MS.gene42029.t1;Parent=MS.gene42029 |
| chr6.4 | exon | 16748314 | 16748402 | 16748314 | ID=MS.gene42029.t1.exon1;Parent=MS.gene42029.t1 |
| chr6.4 | CDS | 16748314 | 16748402 | 16748314 | ID=cds.MS.gene42029.t1;Parent=MS.gene42029.t1 |
| chr6.4 | exon | 16747902 | 16747988 | 16747902 | ID=MS.gene42029.t1.exon2;Parent=MS.gene42029.t1 |
| chr6.4 | CDS | 16747902 | 16747988 | 16747902 | ID=cds.MS.gene42029.t1;Parent=MS.gene42029.t1 |
| chr6.4 | exon | 16747638 | 16747803 | 16747638 | ID=MS.gene42029.t1.exon3;Parent=MS.gene42029.t1 |
| chr6.4 | CDS | 16747638 | 16747803 | 16747638 | ID=cds.MS.gene42029.t1;Parent=MS.gene42029.t1 |
| chr6.4 | exon | 16747394 | 16747465 | 16747394 | ID=MS.gene42029.t1.exon4;Parent=MS.gene42029.t1 |
| chr6.4 | CDS | 16747394 | 16747465 | 16747394 | ID=cds.MS.gene42029.t1;Parent=MS.gene42029.t1 |
| chr6.4 | exon | 16747112 | 16747141 | 16747112 | ID=MS.gene42029.t1.exon5;Parent=MS.gene42029.t1 |
| chr6.4 | CDS | 16747112 | 16747141 | 16747112 | ID=cds.MS.gene42029.t1;Parent=MS.gene42029.t1 |
| chr6.4 | exon | 16746737 | 16746985 | 16746737 | ID=MS.gene42029.t1.exon6;Parent=MS.gene42029.t1 |
| chr6.4 | CDS | 16746737 | 16746985 | 16746737 | ID=cds.MS.gene42029.t1;Parent=MS.gene42029.t1 |
| Gene Sequence |
| Protein sequence |
